Query psy9356
Match_columns 155
No_of_seqs 69 out of 71
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 17:03:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zy2_A Putative GDP-fucose pro 100.0 3.3E-89 1.1E-93 597.1 3.8 151 1-155 16-174 (362)
2 4ap5_A GDP-fucose protein O-fu 100.0 1.2E-38 4.3E-43 271.6 4.2 151 1-154 30-201 (408)
3 2hhc_A NODZ, nodulation fucosy 93.8 0.025 8.7E-07 46.1 2.1 28 2-29 12-39 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 75.7 1 3.5E-05 40.5 1.7 26 5-30 158-183 (526)
5 1k1f_A Breakpoint cluster regi 29.8 18 0.0006 25.3 1.0 21 135-155 8-28 (72)
6 3mn8_A LP15968P; catalytic dom 11.3 74 0.0025 27.3 1.0 54 12-75 3-57 (435)
7 2jpn_A DAR protein, ATP-depend 10.4 34 0.0012 24.3 -1.2 10 63-72 16-25 (79)
8 3lnb_A N-acetyltransferase fam 10.2 49 0.0017 27.7 -0.5 39 43-89 65-103 (309)
9 3rxz_A Polysaccharide deacetyl 10.2 1.3E+02 0.0045 23.8 2.0 19 71-89 14-32 (300)
10 3d9w_A Putative acetyltransfer 9.8 65 0.0022 26.4 0.1 39 43-89 48-86 (293)
No 1
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=100.00 E-value=3.3e-89 Score=597.09 Aligned_cols=151 Identities=43% Similarity=0.948 Sum_probs=136.3
Q ss_pred CCCCccchhHhhhhHHHHHhhccceeecCCeEeeecCCCceeeccCccceecccchhhhhhhhHHHHHHHhCCCCCCCCC
Q psy9356 1 SEGRFGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHK 80 (155)
Q Consensus 1 CMGRFGNQadhFLGsLaFAK~lNRTLvlPPwieY~~~~~~~~~vPf~~yF~v~~L~~yhrvI~Me~Fm~~lAP~~WP~~~ 80 (155)
||||||||||||||||||||+|||||||||||||++++ |+||||++||+|+||++|||||||||||++|||+||||+|
T Consensus 16 CMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~--~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~lap~~WP~~~ 93 (362)
T 3zy2_A 16 CMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPE--TKMIPFEFLFQVGTVAKYTRVVTMQEFTKKIMPTVWPPEK 93 (362)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSS--CEEECHHHHBCHHHHTTTSCEECHHHHHHHTHHHHSCGGG
T ss_pred CcCccccHHHHHHHHHHHHHhhCceEecCccccccCCc--ccccchhheeecchhhhhceeeeHHHHHHHhccccCCccc
Confidence 99999999999999999999999999999999999977 7999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCC--CCCC--CCCCCCCCCCccCccccCceeccceeecC----cccccCCchhHhhhhhhCCCCCCceeee
Q psy9356 81 RIAFCYMARGS--TNES--SCNAKEGNPFGPFWDTYGIDFVGSEFYGP----LHYDVHHSDIADHWKMRYPSDDWPGLLI 152 (155)
Q Consensus 81 R~~fC~~~r~~--~~~~--~C~aKeGNPFGPFWD~~~VdF~~se~~~~----l~~d~~~~~~~~~W~~~fP~~~~PVLAf 152 (155)
|+||||++|.+ ++++ +|+||||||||||||+|||||++||+|++ |+|++ .+++++|+|+||+++||||||
T Consensus 94 R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~--~~~~~~W~~~~p~~~~pVlAf 171 (362)
T 3zy2_A 94 RKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQ--MGSRKKWLEKFPSEEYPVLAF 171 (362)
T ss_dssp CEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC---------CHHHHSCTTTCSEEEE
T ss_pred ceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccc--hhHHHHHHHhCCcccCceEee
Confidence 99999999966 4433 89999999999999999999999999998 99964 557899999999999999999
Q ss_pred ecC
Q psy9356 153 YLV 155 (155)
Q Consensus 153 ~g~ 155 (155)
+|.
T Consensus 172 ~ga 174 (362)
T 3zy2_A 172 SSA 174 (362)
T ss_dssp SSC
T ss_pred cCC
Confidence 994
No 2
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=100.00 E-value=1.2e-38 Score=271.58 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=128.7
Q ss_pred CCCC-ccchhHhhhhHHHHHhhccce----eecCCeEeeecCCC---ceeeccCccceecccchhhhhhhhHHHHHHHhC
Q psy9356 1 SEGR-FGNQADNFLGALALAKGINRT----LVLPPWVEYRYGEP---KSIQVPFDTYFQVEPLQEYHRVMTMEKFMQDIA 72 (155)
Q Consensus 1 CMGR-FGNQadhFLGsLaFAK~lNRT----LvlPPwieY~~~~~---~~~~vPf~~yF~v~~L~~yhrvI~Me~Fm~~lA 72 (155)
|||+ |+||.|+|++++.|||.|||| ||||||+.+.|.+. ++.+|||++||+|++|++||+||+|||||+++|
T Consensus 30 ~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~~~vpVI~meeFl~~~~ 109 (408)
T 4ap5_A 30 NPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYEQFIAESG 109 (408)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHHTTSCEEEHHHHHHHSS
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHHhhCCeeEHHHHHHHhC
Confidence 7999 999999999999999999999 99999998655433 568899999999999999999999999999999
Q ss_pred CCCCC--------CCCeeeeeeecCCC-----CCCCCCCCCCCCCCccCccccCceeccceeecCcccccCCchhHhhhh
Q psy9356 73 PHIWP--------PHKRIAFCYMARGS-----TNESSCNAKEGNPFGPFWDTYGIDFVGSEFYGPLHYDVHHSDIADHWK 139 (155)
Q Consensus 73 P~~WP--------~~~R~~fC~~~r~~-----~~~~~C~aKeGNPFGPFWD~~~VdF~~se~~~~l~~d~~~~~~~~~W~ 139 (155)
|++|| .+.++..||..+.. .....|++|+|||||||||+++|++..++.. ++.......+..|.
T Consensus 110 ~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~---~~~~~~~~~~~~~~ 186 (408)
T 4ap5_A 110 GPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCL---SVQGSASIVAPLLL 186 (408)
T ss_dssp SSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEE---EECSBGGGGHHHHH
T ss_pred CCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeE---EEeecchhhhhhhh
Confidence 99998 67888888876511 1111568999999999999999999887743 34445566788999
Q ss_pred hhCCCCCCceeeeec
Q psy9356 140 MRYPSDDWPGLLIYL 154 (155)
Q Consensus 140 ~~fP~~~~PVLAf~g 154 (155)
+.+++.++||+++.+
T Consensus 187 ~~~~~~s~~v~~~e~ 201 (408)
T 4ap5_A 187 RNTSARSVMLDRAEN 201 (408)
T ss_dssp HCTTCSEEEEESGGG
T ss_pred hcCChhhhhhhhccc
Confidence 999999999998765
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=93.76 E-value=0.025 Score=46.07 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.8
Q ss_pred CCCccchhHhhhhHHHHHhhccceeecC
Q psy9356 2 EGRFGNQADNFLGALALAKGINRTLVLP 29 (155)
Q Consensus 2 MGRFGNQadhFLGsLaFAK~lNRTLvlP 29 (155)
.|.+|||+-|+.-++++|+..||+|+|-
T Consensus 12 ~gGLGNqm~~~a~a~~~A~~t~r~l~vd 39 (330)
T 2hhc_A 12 RTGFGDCLWSLASAWSYAQRTGRTLVID 39 (330)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4789999999999999999999998774
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=75.67 E-value=1 Score=40.48 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=24.6
Q ss_pred ccchhHhhhhHHHHHhhccceeecCC
Q psy9356 5 FGNQADNFLGALALAKGINRTLVLPP 30 (155)
Q Consensus 5 FGNQadhFLGsLaFAK~lNRTLvlPP 30 (155)
||+|+.|.+++|..|-.+|||||+-.
T Consensus 158 fGs~lh~l~~~L~~A~~~~Rtliidd 183 (526)
T 2de0_X 158 YGCQLHHVVYCFMIAYGTQRTLILES 183 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHHHHHHHHHHHHHhhCCEEEEEC
Confidence 89999999999999999999999865
No 5
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=29.78 E-value=18 Score=25.32 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=18.2
Q ss_pred HhhhhhhCCCCCCceeeeecC
Q psy9356 135 ADHWKMRYPSDDWPGLLIYLV 155 (155)
Q Consensus 135 ~~~W~~~fP~~~~PVLAf~g~ 155 (155)
.+.|..+||.++-|++++..|
T Consensus 8 ~eaW~aqfp~~epp~m~l~~v 28 (72)
T 1k1f_A 8 AEAWKAQFPDSEPPRMELRSV 28 (72)
T ss_dssp HHHHHHHCTTSCCCCCCCSSH
T ss_pred HHHHHHhCCCCCCcHhHHhhh
Confidence 689999999999999887653
No 6
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=11.29 E-value=74 Score=27.35 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=17.8
Q ss_pred hhhHHHHHhhccceeecCCeEeeecCCCceeecc-CccceecccchhhhhhhhHHHHHHHhCCCC
Q psy9356 12 FLGALALAKGINRTLVLPPWVEYRYGEPKSIQVP-FDTYFQVEPLQEYHRVMTMEKFMQDIAPHI 75 (155)
Q Consensus 12 FLGsLaFAK~lNRTLvlPPwieY~~~~~~~~~vP-f~~yF~v~~L~~yhrvI~Me~Fm~~lAP~~ 75 (155)
+||+|.+.-++ +++=++..+..+.. || -++++.. ..||..=.|.++|++|+-..
T Consensus 3 ~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~---~~Y~~~~ei~~~l~~l~~~~ 57 (435)
T 3mn8_A 3 TLGLLFASIGI---AVLAMGVPHCRGYT----IKEDESFLQQ---PHYASQEQLEDLFAGLEKAY 57 (435)
T ss_dssp ---------------------------------CCCCGGGSS---CCCCCHHHHHHHHHHHHHHS
T ss_pred eeehhHHHHHH---HHHccccccccCCC----CCChhhccCC---CCCCCHHHHHHHHHHHHHHC
Confidence 68888887777 77778877775433 22 2223222 23888888999999998543
No 7
>2jpn_A DAR protein, ATP-dependent DNA helicase UVSW; bacteriophage helicase, hydrolase; NMR {Enterobacteria phage T4}
Probab=10.39 E-value=34 Score=24.25 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=8.8
Q ss_pred hHHHHHHHhC
Q psy9356 63 TMEKFMQDIA 72 (155)
Q Consensus 63 ~Me~Fm~~lA 72 (155)
+.++||.+|+
T Consensus 16 aIe~Fm~KI~ 25 (79)
T 2jpn_A 16 SIDEFMGKIA 25 (79)
T ss_dssp TTSSHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7789999998
No 8
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=10.23 E-value=49 Score=27.73 Aligned_cols=39 Identities=15% Similarity=0.416 Sum_probs=28.4
Q ss_pred eccCccceecccchhhhhhhhHHHHHHHhCCCCCCCCCeeeeeeecC
Q psy9356 43 QVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHKRIAFCYMAR 89 (155)
Q Consensus 43 ~vPf~~yF~v~~L~~yhrvI~Me~Fm~~lAP~~WP~~~R~~fC~~~r 89 (155)
.|||++. +.+..=+..|+.++..++|.- .+|=||||+--
T Consensus 65 ~iPFENl---d~~~g~~~~ld~~~l~~KiV~-----~~RGGyC~ElN 103 (309)
T 3lnb_A 65 ILPFENL---DIMAGTIKNISKNNLVEKLLI-----QKRGGLCYELN 103 (309)
T ss_dssp HSCEECH---HHHHTCCCCCCHHHHHHHHTT-----TCCCBCHHHHH
T ss_pred cCCccCh---hhhcCCCCCCCHHHHHHHHHH-----cCCCcchHHHH
Confidence 4999974 333333456888898899873 68999999754
No 9
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=10.15 E-value=1.3e+02 Score=23.75 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=15.8
Q ss_pred hCCCCCCCCCeeeeeeecC
Q psy9356 71 IAPHIWPPHKRIAFCYMAR 89 (155)
Q Consensus 71 lAP~~WP~~~R~~fC~~~r 89 (155)
..|-.||.++|.|.|.+-.
T Consensus 14 ~~~~~wP~g~r~av~~~~d 32 (300)
T 3rxz_A 14 AAPVSWPDGKTCAVAFTFD 32 (300)
T ss_dssp CCCCCCSTTCCEEEEEEEE
T ss_pred CCCCCCCCCCEEEEEEEEC
Confidence 4567899999999999875
No 10
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=9.83 E-value=65 Score=26.44 Aligned_cols=39 Identities=15% Similarity=0.443 Sum_probs=27.8
Q ss_pred eccCccceecccchhhhhhhhHHHHHHHhCCCCCCCCCeeeeeeecC
Q psy9356 43 QVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHKRIAFCYMAR 89 (155)
Q Consensus 43 ~vPf~~yF~v~~L~~yhrvI~Me~Fm~~lAP~~WP~~~R~~fC~~~r 89 (155)
.|||++. +.+..-.-.|..++-.+||.- .+|=||||+--
T Consensus 48 ~IPFENL---dv~~g~~i~Ld~~~l~~KiV~-----~~RGGyC~ElN 86 (293)
T 3d9w_A 48 AIPFENL---EAVLGRPVRLDLATLQDKLVH-----SRRGGYCYENA 86 (293)
T ss_dssp HSCBCCH---HHHTTCCCCCSHHHHHHHHTS-----SSCCBCHHHHH
T ss_pred cCCccCh---hhhcCCCCCCCHHHHHHHHHH-----cCCCcChHHHH
Confidence 4999985 333332345777888888884 68999999754
Done!