Query psy9356
Match_columns 155
No_of_seqs 69 out of 71
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 17:03:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9356.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9356hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 44.5 3.5 0.00026 26.9 1.0 21 135-155 8-28 (67)
2 d1w4ta1 d.3.1.5 (A:1-277) Aryl 31.2 4 0.00029 31.0 -0.4 40 42-89 38-77 (277)
3 d2ftsa1 b.85.6.1 (A:654-736) G 26.7 2.2 0.00016 27.6 -2.4 25 5-32 39-63 (83)
4 d1e2ta_ d.3.1.5 (A:) Arylamine 16.5 9.6 0.0007 29.0 -1.0 39 43-89 36-74 (274)
5 d2bsza1 d.3.1.5 (A:6-275) Aryl 16.0 12 0.00089 28.2 -0.5 39 43-89 34-72 (270)
6 d1w5ra1 d.3.1.5 (A:3-275) Aryl 13.8 15 0.0011 27.6 -0.5 39 43-89 33-72 (273)
7 d1s99a_ d.58.48.2 (A:) Putativ 12.5 51 0.0037 24.7 2.3 21 2-23 116-136 (189)
8 d1a0tp_ f.4.3.2 (P:) Sucrose-s 10.9 22 0.0016 28.5 -0.4 18 2-20 38-55 (413)
9 d3grsa3 d.87.1.1 (A:364-478) G 10.7 56 0.0041 21.1 1.8 22 5-26 73-94 (115)
10 d2nqra1 b.85.6.1 (A:327-409) M 10.7 35 0.0025 21.1 0.6 43 4-50 39-82 (83)
No 1
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.48 E-value=3.5 Score=26.94 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=18.7
Q ss_pred HhhhhhhCCCCCCceeeeecC
Q psy9356 135 ADHWKMRYPSDDWPGLLIYLV 155 (155)
Q Consensus 135 ~~~W~~~fP~~~~PVLAf~g~ 155 (155)
.+.|..+||.++-|+.+|.+|
T Consensus 8 ~eaW~aqFP~sepP~m~l~sV 28 (67)
T d1k1fa_ 8 AEAWKAQFPDSEPPRMELRSV 28 (67)
T ss_dssp HHHHHHHCTTSCCCCCCCSSH
T ss_pred HHHHHHhCCCCCCCcchhccH
Confidence 589999999999999988764
No 2
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=31.20 E-value=4 Score=31.04 Aligned_cols=40 Identities=15% Similarity=0.370 Sum_probs=30.5
Q ss_pred eeccCccceecccchhhhhhhhHHHHHHHhCCCCCCCCCeeeeeeecC
Q psy9356 42 IQVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHKRIAFCYMAR 89 (155)
Q Consensus 42 ~~vPf~~yF~v~~L~~yhrvI~Me~Fm~~lAP~~WP~~~R~~fC~~~r 89 (155)
..|||++ ++.+..-...|+.++..++|-- .+|=||||+--
T Consensus 38 ~~iPfEN---L~~~~g~~i~ld~~~l~~kiV~-----~~rGGyC~E~N 77 (277)
T d1w4ta1 38 RRVAFEN---LDVLLDRPIEIDADKVFAKVVE-----GSRGGYCFELN 77 (277)
T ss_dssp HHSCEEC---HHHHTTCCCCCSHHHHHHHHTT-----TTCCBCHHHHH
T ss_pred hcCCcCC---cchhcCCCCCCCHHHHHHHHHh-----cCCCccchhhh
Confidence 3499998 5555554566788899999974 78999999864
No 3
>d2ftsa1 b.85.6.1 (A:654-736) Gephyrin, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.75 E-value=2.2 Score=27.63 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=21.3
Q ss_pred ccchhHhhhhHHHHHhhccceeecCCeE
Q psy9356 5 FGNQADNFLGALALAKGINRTLVLPPWV 32 (155)
Q Consensus 5 FGNQadhFLGsLaFAK~lNRTLvlPPwi 32 (155)
+|||.-|-|+||+-| |=-++|||--
T Consensus 39 ~~~Q~S~~L~sl~~A---n~Li~lP~~~ 63 (83)
T d2ftsa1 39 TGNQMSSRLMSMRSA---NGLLMLPPKT 63 (83)
T ss_dssp CCSCSSSCCCCSSCC---CEEEEECCCC
T ss_pred CCCCccHHHHHHhhC---CEEEEcCCCC
Confidence 699999999999988 5558999864
No 4
>d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella typhimurium [TaxId: 90371]}
Probab=16.48 E-value=9.6 Score=29.01 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=29.3
Q ss_pred eccCccceecccchhhhhhhhHHHHHHHhCCCCCCCCCeeeeeeecC
Q psy9356 43 QVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHKRIAFCYMAR 89 (155)
Q Consensus 43 ~vPf~~yF~v~~L~~yhrvI~Me~Fm~~lAP~~WP~~~R~~fC~~~r 89 (155)
.|||++. +.+..-.-.|.+++..++|.- .+|=||||+-.
T Consensus 36 ~vPfENl---~v~~g~~i~ld~~~l~~kiV~-----~~rGGyC~ElN 74 (274)
T d1e2ta_ 36 AIPFENL---DVLLPREIQLDETALEEKLLY-----ARRGGYCFELN 74 (274)
T ss_dssp HSCEECH---HHHTTCCCCCSTTHHHHHHTT-----TCCCBCHHHHH
T ss_pred cCCccCc---ccccCCCccCCHHHHHHHHhh-----cCCCccchhhH
Confidence 4899983 444444567788898899974 78999999865
No 5
>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium loti [TaxId: 381]}
Probab=16.05 E-value=12 Score=28.21 Aligned_cols=39 Identities=15% Similarity=0.427 Sum_probs=29.4
Q ss_pred eccCccceecccchhhhhhhhHHHHHHHhCCCCCCCCCeeeeeeecC
Q psy9356 43 QVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHKRIAFCYMAR 89 (155)
Q Consensus 43 ~vPf~~yF~v~~L~~yhrvI~Me~Fm~~lAP~~WP~~~R~~fC~~~r 89 (155)
.|||++. +.+..-...|..++..++|-- ++|=||||+--
T Consensus 34 ~iPfENl---~~~~~~~~~ld~~~l~~kiV~-----~~rGG~C~E~N 72 (270)
T d2bsza1 34 AIPFENI---DPFLGRPVRLDLAALQDKIVL-----GGRGGYCFEHN 72 (270)
T ss_dssp HSCEECH---HHHTTCCCCCSHHHHHHHHTT-----SCCCBCHHHHH
T ss_pred cCCcccc---hhhhCCCcCCCHHHHHHHHHh-----cCCcccchhhh
Confidence 4999973 444444566788888888883 78999999865
No 6
>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase {Mycobacterium smegmatis [TaxId: 1772]}
Probab=13.79 E-value=15 Score=27.64 Aligned_cols=39 Identities=18% Similarity=0.464 Sum_probs=28.4
Q ss_pred eccCccceecccchhhhhh-hhHHHHHHHhCCCCCCCCCeeeeeeecC
Q psy9356 43 QVPFDTYFQVEPLQEYHRV-MTMEKFMQDIAPHIWPPHKRIAFCYMAR 89 (155)
Q Consensus 43 ~vPf~~yF~v~~L~~yhrv-I~Me~Fm~~lAP~~WP~~~R~~fC~~~r 89 (155)
.|||++. +.+..-+.. ++.++..++|-- .+|=||||+-.
T Consensus 33 ~iPfENl---~~~~~~~~~~ld~~~l~~kiV~-----~~rGGyC~E~N 72 (273)
T d1w5ra1 33 SIPFENL---DPLLGIPVADLSAEALFAKLVD-----RRRGGYQYEHN 72 (273)
T ss_dssp HSCEECH---HHHTTCCCCCCSHHHHHHHHTT-----TCCCBCHHHHH
T ss_pred cCCcccc---hHHhCCCCCCCCHHHHHHHHHh-----cCCcccchhhh
Confidence 4899854 444333443 889999999984 78999999865
No 7
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=12.53 E-value=51 Score=24.67 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=18.8
Q ss_pred CCCccchhHhhhhHHHHHhhcc
Q psy9356 2 EGRFGNQADNFLGALALAKGIN 23 (155)
Q Consensus 2 MGRFGNQadhFLGsLaFAK~lN 23 (155)
||. ||-||+.-|.+-|||..-
T Consensus 116 mg~-~d~m~~Iy~~id~~k~~G 136 (189)
T d1s99a_ 116 MNE-PDYMGLIMEAVDIAKAQG 136 (189)
T ss_dssp TTC-TTHHHHHHHHHHHHHHTT
T ss_pred cCC-ccHHHHHHHHHHHHHHcC
Confidence 775 999999999999999864
No 8
>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium (Salmonella typhimurium) [TaxId: 90371]}
Probab=10.86 E-value=22 Score=28.51 Aligned_cols=18 Identities=44% Similarity=0.745 Sum_probs=12.1
Q ss_pred CCCccchhHhhhhHHHHHh
Q psy9356 2 EGRFGNQADNFLGALALAK 20 (155)
Q Consensus 2 MGRFGNQadhFLGsLaFAK 20 (155)
+||.||+.|.. +-|.|.|
T Consensus 38 ~gRLGNE~d~y-~El~l~~ 55 (413)
T d1a0tp_ 38 IGRLGNQADTY-VEMNLEH 55 (413)
T ss_dssp CCCTTCCCSEE-EEEEEEE
T ss_pred ccccccccccE-EEEEeee
Confidence 68999999854 3444444
No 9
>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.73 E-value=56 Score=21.13 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.5
Q ss_pred ccchhHhhhhHHHHHhhcccee
Q psy9356 5 FGNQADNFLGALALAKGINRTL 26 (155)
Q Consensus 5 FGNQadhFLGsLaFAK~lNRTL 26 (155)
+|++|+..+..++.|-..+-|+
T Consensus 73 vG~~A~ElI~~~~~ai~~~~t~ 94 (115)
T d3grsa3 73 QGLGCDEMLQGFAVAVKMGATK 94 (115)
T ss_dssp ESTTHHHHHHHHHHHHHTTCBH
T ss_pred eccCHHHHHHHHHHHHHcCCCH
Confidence 5899999999999998888775
No 10
>d2nqra1 b.85.6.1 (A:327-409) Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.70 E-value=35 Score=21.13 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=28.4
Q ss_pred CccchhHhhhhHHHHHhhccceeecCCeEee-ecCCCceeeccCccce
Q psy9356 4 RFGNQADNFLGALALAKGINRTLVLPPWVEY-RYGEPKSIQVPFDTYF 50 (155)
Q Consensus 4 RFGNQadhFLGsLaFAK~lNRTLvlPPwieY-~~~~~~~~~vPf~~yF 50 (155)
..|+|..+-|.+|+-|-+ =++||+=.+- ..+..-. -+||+..|
T Consensus 39 ~~~~q~S~~l~sl~~an~---li~lp~~~~~i~~G~~V~-v~~~~~l~ 82 (83)
T d2nqra1 39 TTGHQGSHIFSSFSLGNC---FIVLERDRGNVEVGEWVE-VEPFNALF 82 (83)
T ss_dssp ECSCCCTTCCTHHHHCSE---EEEECTTCCCBCTTCEEE-EEECCGGG
T ss_pred ECCCCCcHHHHHHHHCCE---EEEeCCCCCccCCCCEEE-EEEchHhc
Confidence 368899999999988754 4788976553 3222222 37777655
Done!