RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9356
(155 letters)
>gnl|CDD|211388 cd11302, O-FucT-1, GDP-fucose protein O-fucosyltransferase 1. The
protein O-fucosyltransferase 1 (Ofut1 or O-FucT-1) adds
O-fucose to EGF (epidermal growth factor-like) repeats.
The O-fucsosylation of the Notch receptor signaling
protein is dependent on this enzyme, which requires
GDP-fucose as a substrate. O-fucose residues added to
the target of O-FucT-1 may be further elongated by other
glycosyltransferases. On top of O-fucosylation, O-FucT-1
may have other functions such as the regulation of the
Notch receptor exit from the ER. Six highly conserved
cysteines are present in O-FucT-1, which is a soluble ER
protein, as well as a DXD-like motif (ERD), conserved in
mammals, Drosophila, and C. elegans. Both features are
characteristic of several glycosyltransferase families.
The membrane-bound pre-protein is released by
proteolysis and, as for most glycosyltransferases, is
strongly activated by manganese. O-FucT-1 is similar to
family 1 glycosyltransferases (GT1).
Length = 347
Score = 273 bits (701), Expect = 3e-93
Identities = 92/146 (63%), Positives = 113/146 (77%)
Query: 3 GRFGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVM 62
GRFGNQAD+FLG+LA AK +NRTLVLPPW+EYR+G P S+Q+PFD YF+VEPLQEYHRV+
Sbjct: 13 GRFGNQADHFLGSLAFAKALNRTLVLPPWIEYRHGPPPSVQIPFDDYFKVEPLQEYHRVI 72
Query: 63 TMEKFMQDIAPHIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFY 122
TME FM+++AP IWPP KR +CY R S + C KEGNPFGPFWD +G+DF GSE Y
Sbjct: 73 TMEDFMEELAPTIWPPGKRKGYCYSPRASPDSKDCPMKEGNPFGPFWDHFGVDFDGSELY 132
Query: 123 GPLHYDVHHSDIADHWKMRYPSDDWP 148
GPL YD + D+ + W R+P + P
Sbjct: 133 GPLSYDTFYPDVREAWNERFPPSEHP 158
>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase. This
is a family of conserved proteins representing the
enzyme responsible for adding O-fucose to EGF (epidermal
growth factor-like) repeats. Six highly conserved
cysteines are present in O-FucT-1 as well as a DXD-like
motif (ERD), conserved in mammals, Drosophila, and C.
elegans. Both features are characteristic of several
glycosyltransferase families. The enzyme is a
membrane-bound protein released by proteolysis and, as
for most glycosyltransferases, is strongly activated by
manganese.
Length = 315
Score = 91.6 bits (228), Expect = 5e-23
Identities = 38/139 (27%), Positives = 54/139 (38%), Gaps = 35/139 (25%)
Query: 3 GRFGNQADNFLGALALAKGINRTLVLPPWVE-YRYGEPKSIQVPFDTYFQVEPLQEYH-R 60
G F Q D A+A+A+ +N TLVLPPW E Y + +P F +F VE Y R
Sbjct: 8 GGFNQQRDVICDAVAVARLLNATLVLPPWDELYHWKDPSK----FSDFFDVEHFISYLSR 63
Query: 61 VMTMEKFMQDIAPHIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSE 120
V+ + KF+ P P KR+ +DT+ +DF
Sbjct: 64 VVEIVKFL----PKELPSAKRLQ-------------------------YDTFKVDFRVCV 94
Query: 121 FYGPLHYDVHHSDIADHWK 139
P +Y + K
Sbjct: 95 QSSPSYYLESVLPLLKKHK 113
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and
related proteins. O-fucosyltransferase-like proteins
are GDP-fucose dependent enzymes with similarities to
the family 1 glycosyltransferases (GT1). They are
soluble ER proteins that may be proteolytically cleaved
from a membrane-associated preprotein, and are involved
in the O-fucosylation of protein substrates, the core
fucosylation of growth factor receptors, and other
processes.
Length = 206
Score = 36.2 bits (84), Expect = 0.003
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 3 GRFGNQADNFLGALALAKGINRTLVLPP 30
G F NQ + FL AL LA + RTLVLP
Sbjct: 9 GGFNNQRNEFLNALLLAILLGRTLVLPL 36
>gnl|CDD|211384 cd11298, O-FucT-2, GDP-fucose protein O-fucosyltransferase 2.
O-FucT-2 adds O-fucose to thrombospondin type 1 repeats
(TSRs), and appears conserved in bilateria. The
O-fucosylation of TSRs appears to play a role in
regulating secretion of metalloproteases of the ADAMTS
superfamily. O-fucosyltransferase-like proteins are
GDP-fucose dependent enzymes with similarities to the
family 1 glycosyltransferases (GT1). They are soluble
ER proteins that may be proteolytically cleaved from a
membrane-associated preprotein, and are involved in the
O-fucosylation of protein substrates, the core
fucosylation of growth factor receptors, and other
processes.
Length = 374
Score = 31.5 bits (72), Expect = 0.15
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 26 LVLPPW---VEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHI 75
LVLPPW ++ + K ++P+ +F +E L Y V+ E+F+++ P
Sbjct: 40 LVLPPWGRLYHWKSRDIKQSRLPWSLFFDLESLNRYIPVIEYEEFLKETGPVS 92
>gnl|CDD|132588 TIGR03549, TIGR03549, YcaO domain protein. This family consists of
remarkably well-conserved proteins from gamma and beta
Proteobacteria, heavily skewed towards organisms of
marine environments. Its gene neighborhood is not
conserved. This family has an OsmC-like N-terminal
domain. It shares a YcaO domain, frequently associated
with ATP-dependent cyclodehydration for peptide
modification. The function is unknown. Fifteen of the
first sixteen members of this family are from
selenouridine-positive genomes, but this correlation may
not be meaningful.
Length = 718
Score = 30.6 bits (69), Expect = 0.31
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 19/85 (22%)
Query: 69 QDIAPHIWPPHKRIAFCYM----ARGSTNESS-CNAKEGNPFGPFWDTYGID-FVGSEFY 122
++I P++W H R A M +G+T ES+ C+A G F + + F +F+
Sbjct: 182 RNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSA-----LGEFIERLNCNFFYNDQFF 236
Query: 123 GPLHYDVHHSDIADHWKMRYPSDDW 147
G DIA+ + YP++ W
Sbjct: 237 G--------EDIANSAFVHYPNEKW 253
>gnl|CDD|192680 pfam10976, DUF2790, Protein of unknown function (DUF2790). This
family of proteins with unknown function appear to be
restricted to Pseudomonadaceae.
Length = 78
Score = 26.1 bits (58), Expect = 3.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 12 FLGALALAKGINRTLVLPPWVEYRYGEP 39
L LALA+ T P +YRYG
Sbjct: 5 LLSLLALAQSAATTPAPPEVEDYRYGMK 32
>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit;
Provisional.
Length = 1054
Score = 27.3 bits (61), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 112 YGIDFVGSEFYGPLHYDVHHSDIAD 136
Y +++V EF DVH+S I+D
Sbjct: 428 YSLNYVSFEFLKEQKEDVHYSIISD 452
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 26.9 bits (60), Expect = 5.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 15 ALALAKGINRTLVLPPWVEYRYGEPKS 41
AL L + L++ P + YR G
Sbjct: 161 ALLLGLILLLLLLIIPTLFYRAGRKFG 187
>gnl|CDD|173243 PRK14782, PRK14782, lipoprotein signal peptidase; Provisional.
Length = 157
Score = 25.9 bits (57), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 22 INRTLVLPPWVEYRYGEPKSI 42
I VLPP++ +RYGE + I
Sbjct: 31 IRAIDVLPPFLNFRYGENRGI 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.478
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,217,825
Number of extensions: 722112
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 19
Length of query: 155
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 66
Effective length of database: 6,990,096
Effective search space: 461346336
Effective search space used: 461346336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)