RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9356
         (155 letters)



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
           glycosyltransferase, GT-B, catalytic mechanism,; HET:
           GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
           3zy5_A* 3zy6_A*
          Length = 362

 Score =  199 bits (507), Expect = 3e-64
 Identities = 67/155 (43%), Positives = 101/155 (65%), Gaps = 8/155 (5%)

Query: 2   EGRFGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRV 61
            GRFGNQ D FLG LA AK ++RTLVLP ++E+++   ++  +PF+  FQV  + +Y RV
Sbjct: 17  MGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHP--ETKMIPFEFLFQVGTVAKYTRV 74

Query: 62  MTMEKFMQDIAPHIWPPHKRIAFCYMARGST----NESSCNAKEGNPFGPFWDTYGIDFV 117
           +TM++F + I P +WPP KR AFC+  R +      E  C++KEGNPFGP+WD   + FV
Sbjct: 75  VTMQEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFV 134

Query: 118 GSEFYG--PLHYDVHHSDIADHWKMRYPSDDWPGL 150
           G E++G  P  +D++       W  ++PS+++P L
Sbjct: 135 GDEYFGDIPGGFDLNQMGSRKKWLEKFPSEEYPVL 169


>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
           3.00A {Homo sapiens} PDB: 4ap6_A*
          Length = 408

 Score =  112 bits (280), Expect = 3e-30
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 26/165 (15%)

Query: 1   SEGRFGNQADNFLGALALAKGINRT----LVLPPWVE---YRYGEPKSIQVPFDTYFQVE 53
            EG F  + D ++   +L K + +T    LVLPPW     ++  +   +++P+  +F + 
Sbjct: 32  PEG-FNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLP 90

Query: 54  PLQEYHRVMTMEKFMQDIAPHI---------WPPHKRIAFCY--MARGSTNESSCNAKEG 102
            L +   V+  E+F+ +              +    +       +      +    +++ 
Sbjct: 91  SLNKNIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDK 150

Query: 103 NPF--GPFWD---TYGIDFVGSEFYGPLH--YDVHHSDIADHWKM 140
           + +  G FW    T G++       G       +   + +    M
Sbjct: 151 HEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVM 195


>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
          1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
          3six_A*
          Length = 330

 Score = 28.7 bits (63), Expect = 0.79
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 5  FGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTM 64
          FG+   +   A + A+   RTLV+  W    Y   +     F  +F  EP+++   V  +
Sbjct: 15 FGDCLWSLASAWSYAQRTGRTLVI-DWRGSCYV-EQPFSNAFPAFF--EPVEDIAGVPVI 70

Query: 65 EKFMQDIAPHIWPPHKRI 82
               +      P   R 
Sbjct: 71 CDDRVNQLSFPGPFFPRW 88


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 1.7
 Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 29/125 (23%)

Query: 7   NQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQ-----VEPLQEYH-- 59
                F+    L    N   ++ P  +    +P  +   +           +   +Y+  
Sbjct: 77  EMVQKFVEE-VLRI--NYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 60  R---VMTMEKFMQDIAPHIWPPHKRIAFCYMARGS-----TNESSCNAKE---GNPFGPF 108
           R    + + + + ++ P        +    +  GS       +  C + +      F  F
Sbjct: 133 RLQPYLKLRQALLELRPAKN-----VLIDGVL-GSGKTWVALDV-CLSYKVQCKMDFKIF 185

Query: 109 WDTYG 113
           W    
Sbjct: 186 WLNLK 190


>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
           N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
          Length = 526

 Score = 26.7 bits (58), Expect = 3.6
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 5   FGNQADNFLGALALAKGINRTLVL-PPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVM- 62
           +G Q  + +    +A G  RTL+L      Y  G  +++  P                  
Sbjct: 158 YGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSG 217

Query: 63  -TMEKFMQDI-APHIWPPHKRIAFCYMA 88
              +K +Q +  P +   H R  +  +A
Sbjct: 218 EVKDKNVQVVELPIVDSLHPRPPYLPLA 245


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 5.0
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 9/36 (25%)

Query: 24 RTLVLPPWVEYRYG--EPKSIQVPFDTYFQVEPLQE 57
          R L L       +G  E   + VP  ++F    LQE
Sbjct: 7  RPLTL------SHGSLEH-VLLVPTASFFIASQLQE 35


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.141    0.478 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,635,109
Number of extensions: 149717
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 17
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)