RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9356
         (155 letters)



>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment)
           {Bacillus stearothermophilus, newly identified strain as
           yet unnamed [TaxId: 1422]}
          Length = 408

 Score = 26.4 bits (57), Expect = 1.8
 Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 4/114 (3%)

Query: 18  LAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTMEKF----MQDIAP 73
           L   +   L LP   + + G   S  V        E ++       + K     ++ +  
Sbjct: 66  LGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLK 125

Query: 74  HIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFYGPLHY 127
            + P  K++   +    +      + +      P     G     +       +
Sbjct: 126 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDW 179


>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor
           ectodomain, protease-like domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 294

 Score = 24.0 bits (51), Expect = 9.8
 Identities = 9/70 (12%), Positives = 16/70 (22%), Gaps = 2/70 (2%)

Query: 63  TMEKFMQDIAPHIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFY 122
            +   ++    ++  P            +           N   PF    GI  V   F 
Sbjct: 187 LLYTLIEKTMQNVKHPVTGQFLYQ--DSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFC 244

Query: 123 GPLHYDVHHS 132
               Y    +
Sbjct: 245 EDTDYPYLGT 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.478 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 664,606
Number of extensions: 30485
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 11
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)