BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9357
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZY2|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp (High
Resolution Dataset)
pdb|3ZY3|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp
(Crystal-Form-Iii)
pdb|3ZY3|B Chain B, Crystal Structure Of Pofut1 In Complex With Gdp
(Crystal-Form-Iii)
pdb|3ZY4|A Chain A, Crystal Structure Of Pofut1 Apo-Form (Crystal-Form-I)
pdb|3ZY5|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
(Crystal-Form-I)
pdb|3ZY6|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
(Crystal-Form-Ii)
Length = 362
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 7 QCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66
QCLG + G T+E+C PS + ++ Q+ V G K +FVA+D +++ + + EA K
Sbjct: 244 QCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGA-KSVFVASDKDHMIDEINEALKP 302
Query: 67 TEI---RIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL---PSSFWA 118
EI R P D + LAI+ +A+ F+GNC+S+F+ VKR RD G PS+F+
Sbjct: 303 YEIEAHRQEPDDM--YTSLAIMGRADLFVGNCVSTFSHIVKRERDHAGQSPRPSAFFG 358
>pdb|4AP5|A Chain A, Crystal Structure Of Human Pofut2
pdb|4AP5|B Chain B, Crystal Structure Of Human Pofut2
Length = 408
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 25 PSVETVVRQLKRVVREHGQIKYIFVATDN-----NNLNEPLKEAFK----RTEIRIVPSD 75
PS+E VR+++ +++ H ++ +FVATD L + L E + E+ +
Sbjct: 286 PSLEGAVRKIRSLMKTH-RLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 344
Query: 76 QSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL 112
+D I + A FIG +S+F+ + R++ GL
Sbjct: 345 GVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGL 381
>pdb|4AP6|A Chain A, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|B Chain B, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|C Chain C, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
pdb|4AP6|D Chain D, Crystal Structure Of Human Pofut2 E54a Mutant In Complex
With Gdp- Fucose
Length = 422
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 25 PSVETVVRQLKRVVREHGQIKYIFVATDN-----NNLNEPLKEAFK----RTEIRIVPSD 75
PS+E VR+++ +++ H ++ +FVATD L + L E + E+ +
Sbjct: 300 PSLEGAVRKIRSLMKTH-RLDKVFVATDAVRKEYEELKKLLPEMVRFEPTWEELELYKDG 358
Query: 76 QSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL 112
+D I + A FIG +S+F+ + R++ GL
Sbjct: 359 GVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGL 395
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 17 VATEELCFPSVETVVRQLKRVVREHGQIKY 46
+ TE L F S++T QLKR VR H I Y
Sbjct: 13 LGTENLYFQSMKTTQEQLKRNVRFHAFISY 42
>pdb|1LM7|A Chain A, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
pdb|1LM7|B Chain B, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
Length = 248
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 48 FVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVK 104
F+ +NL P++EA+KR + I ++ + A+ + GN IS F A K
Sbjct: 92 FIVDPVSNLRLPVEEAYKRGLVGIEFKEKLLSAERAVTGYNDPETGNIISLFQAMNK 148
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Transcription Elongation Factors Spt4-Spt5ngn Domain
Length = 200
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 4 NAPQCLGYRNEYGVATEELCFPSVETVVRQLK 35
P C G E GV+T E PS E +V K
Sbjct: 23 GCPNCQGIFEEAGVSTMECTSPSFEGLVGMCK 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,670,617
Number of Sequences: 62578
Number of extensions: 126362
Number of successful extensions: 314
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 6
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)