Query psy9357
Match_columns 132
No_of_seqs 101 out of 137
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:04:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3849|consensus 100.0 7.8E-52 1.7E-56 344.6 7.7 127 3-132 259-386 (386)
2 PF10250 O-FucT: GDP-fucose pr 99.9 1.1E-22 2.4E-27 166.3 7.0 111 2-113 220-345 (351)
3 PF05830 NodZ: Nodulation prot 97.2 0.00053 1.2E-08 58.5 4.5 60 44-104 214-292 (321)
4 PF01531 Glyco_transf_11: Glyc 95.9 0.054 1.2E-06 44.7 8.5 80 23-107 186-266 (298)
5 PRK07561 DNA topoisomerase I s 94.4 0.09 2E-06 49.8 6.0 94 24-120 70-207 (859)
6 PF03254 XG_FTase: Xyloglucan 90.5 0.44 9.6E-06 42.9 4.7 64 43-106 353-435 (476)
7 PRK09860 putative alcohol dehy 89.9 1.3 2.8E-05 37.9 7.0 67 29-96 17-97 (383)
8 COG2984 ABC-type uncharacteriz 88.5 2 4.3E-05 37.1 7.0 80 29-108 144-237 (322)
9 KOG3705|consensus 88.0 0.25 5.5E-06 44.4 1.4 82 24-111 381-488 (580)
10 PRK08780 DNA topoisomerase I; 87.7 1.6 3.4E-05 41.2 6.4 94 24-120 57-198 (780)
11 PRK07283 hypothetical protein; 85.9 3.1 6.7E-05 29.3 5.7 67 32-100 24-91 (98)
12 PRK06599 DNA topoisomerase I; 85.5 1.7 3.7E-05 40.1 5.4 39 23-64 56-98 (675)
13 cd06334 PBP1_ABC_ligand_bindin 85.2 8.7 0.00019 31.8 9.0 97 22-118 114-226 (351)
14 PF08821 CGGC: CGGC domain; I 84.9 2.4 5.3E-05 30.7 4.9 45 27-73 51-104 (107)
15 cd08192 Fe-ADH7 Iron-containin 84.5 4.1 8.8E-05 34.4 6.8 70 29-99 10-93 (370)
16 cd08193 HVD 5-hydroxyvalerate 84.0 4.5 9.7E-05 34.3 6.9 71 29-100 12-96 (376)
17 cd08185 Fe-ADH1 Iron-containin 83.7 4.1 8.9E-05 34.5 6.6 70 29-100 12-96 (380)
18 PRK06683 hypothetical protein; 83.7 3.3 7.1E-05 28.5 5.0 43 32-75 17-60 (82)
19 cd06382 PBP1_iGluR_Kainate N-t 82.7 8.3 0.00018 30.8 7.7 94 21-115 107-209 (327)
20 cd08181 PPD-like 1,3-propanedi 82.7 6.4 0.00014 33.2 7.3 73 29-103 12-99 (357)
21 cd06337 PBP1_ABC_ligand_bindin 82.3 7.4 0.00016 31.9 7.4 88 24-113 125-229 (357)
22 PRK10624 L-1,2-propanediol oxi 82.3 5.3 0.00011 34.0 6.7 67 29-96 16-96 (382)
23 PF02348 CTP_transf_3: Cytidyl 81.9 9.7 0.00021 28.8 7.5 41 28-73 25-65 (217)
24 COG1454 EutG Alcohol dehydroge 81.8 5.6 0.00012 34.8 6.7 70 29-99 15-98 (377)
25 cd06379 PBP1_iGluR_NMDA_NR1 N- 81.1 9.2 0.0002 31.5 7.6 92 22-114 133-240 (377)
26 cd06336 PBP1_ABC_ligand_bindin 81.0 12 0.00025 30.5 8.0 94 24-119 119-226 (347)
27 cd08191 HHD 6-hydroxyhexanoate 80.8 6.4 0.00014 33.6 6.7 67 30-98 10-90 (386)
28 cd06349 PBP1_ABC_ligand_bindin 80.8 24 0.00051 28.3 9.7 88 20-108 111-212 (340)
29 PRK15454 ethanol dehydrogenase 80.6 7.1 0.00015 33.7 6.9 76 22-98 24-117 (395)
30 PRK13600 putative ribosomal pr 80.4 3.9 8.4E-05 28.7 4.4 42 32-74 19-61 (84)
31 cd08188 Fe-ADH4 Iron-containin 80.4 7 0.00015 33.2 6.8 68 29-97 14-95 (377)
32 TIGR02638 lactal_redase lactal 80.4 6.8 0.00015 33.3 6.7 69 29-98 15-97 (379)
33 cd08189 Fe-ADH5 Iron-containin 80.2 7.3 0.00016 33.0 6.8 69 29-98 12-94 (374)
34 cd06346 PBP1_ABC_ligand_bindin 80.2 15 0.00033 29.3 8.3 94 22-117 116-222 (312)
35 cd06366 PBP1_GABAb_receptor Li 80.0 13 0.00027 30.0 7.9 92 19-112 111-217 (350)
36 cd06355 PBP1_FmdD_like Peripla 79.9 12 0.00027 30.5 7.9 83 26-109 116-211 (348)
37 PF09580 Spore_YhcN_YlaJ: Spor 79.8 2.9 6.3E-05 31.5 3.9 41 25-65 113-156 (177)
38 cd08176 LPO Lactadehyde:propan 79.6 8.2 0.00018 32.7 7.0 69 29-98 14-96 (377)
39 PF13271 DUF4062: Domain of un 79.5 3.2 6.9E-05 28.0 3.6 48 46-93 1-58 (83)
40 cd01028 TOPRIM_TopoIA TOPRIM_T 79.4 4.1 8.8E-05 30.0 4.5 41 22-65 72-116 (142)
41 cd08194 Fe-ADH6 Iron-containin 79.0 8.2 0.00018 32.7 6.8 69 29-98 9-91 (375)
42 COG3384 Aromatic ring-opening 79.0 2.6 5.7E-05 35.5 3.7 90 3-95 65-170 (268)
43 COG0683 LivK ABC-type branched 78.9 18 0.0004 30.1 8.7 97 21-119 126-235 (366)
44 cd03362 TOPRIM_TopoIA_TopoIII 78.9 3.3 7.1E-05 30.9 3.9 42 22-66 80-125 (151)
45 cd08182 HEPD Hydroxyethylphosp 78.8 7.3 0.00016 32.8 6.4 68 30-98 10-88 (367)
46 cd06342 PBP1_ABC_LIVBP_like Ty 78.7 23 0.00051 27.9 8.9 96 22-119 113-222 (334)
47 PF04577 DUF563: Protein of un 78.5 3.8 8.3E-05 30.6 4.2 61 45-105 104-170 (206)
48 cd06340 PBP1_ABC_ligand_bindin 78.1 22 0.00047 28.9 8.8 95 21-115 116-227 (347)
49 cd08551 Fe-ADH iron-containing 77.5 9.3 0.0002 32.1 6.6 70 29-99 9-92 (370)
50 PRK13602 putative ribosomal pr 77.2 7.9 0.00017 26.5 5.1 47 33-80 18-65 (82)
51 cd08190 HOT Hydroxyacid-oxoaci 76.2 9.8 0.00021 32.9 6.5 70 30-100 10-93 (414)
52 cd03361 TOPRIM_TopoIA_RevGyr T 75.9 7.8 0.00017 29.8 5.3 38 25-65 103-144 (170)
53 PRK13601 putative L7Ae-like ri 75.7 9.6 0.00021 26.4 5.2 51 32-83 14-65 (82)
54 cd06345 PBP1_ABC_ligand_bindin 75.3 40 0.00087 27.1 9.5 90 21-112 117-224 (344)
55 cd08171 GlyDH-like2 Glycerol d 75.2 8.1 0.00017 32.4 5.6 68 29-98 9-89 (345)
56 cd06348 PBP1_ABC_ligand_bindin 75.0 33 0.00071 27.5 9.0 95 23-118 115-223 (344)
57 cd06335 PBP1_ABC_ligand_bindin 74.9 29 0.00063 28.2 8.7 93 23-116 117-222 (347)
58 TIGR03609 S_layer_CsaB polysac 74.8 22 0.00048 28.5 7.9 65 27-94 190-257 (298)
59 PF01751 Toprim: Toprim domain 74.5 5.7 0.00012 27.3 3.9 28 26-56 45-72 (100)
60 PRK07714 hypothetical protein; 74.3 14 0.00031 25.8 5.9 61 32-93 24-85 (100)
61 cd08187 BDH Butanol dehydrogen 73.5 14 0.00031 31.4 6.8 68 29-98 15-97 (382)
62 cd06350 PBP1_GPCR_family_C_lik 71.8 26 0.00056 28.0 7.6 92 20-112 137-242 (348)
63 cd06338 PBP1_ABC_ligand_bindin 71.6 39 0.00085 27.0 8.6 90 22-113 118-222 (345)
64 cd06269 PBP1_glutamate_recepto 71.5 31 0.00068 25.9 7.6 91 21-112 118-220 (298)
65 cd06360 PBP1_alkylbenzenes_lik 71.4 42 0.0009 26.6 8.6 87 24-112 115-214 (336)
66 COG1861 SpsF Spore coat polysa 70.8 11 0.00025 31.3 5.4 79 26-105 27-145 (241)
67 PF00875 DNA_photolyase: DNA p 70.6 8.8 0.00019 28.4 4.4 78 30-111 76-157 (165)
68 TIGR02898 spore_YhcN_YlaJ spor 70.4 6.8 0.00015 30.4 3.8 39 27-65 96-137 (158)
69 cd06343 PBP1_ABC_ligand_bindin 70.3 34 0.00073 27.7 8.1 90 22-113 122-225 (362)
70 PTZ00106 60S ribosomal protein 70.1 17 0.00037 26.3 5.6 52 33-85 32-85 (108)
71 cd07766 DHQ_Fe-ADH Dehydroquin 69.9 19 0.0004 29.6 6.5 70 30-100 10-91 (332)
72 PRK15404 leucine ABC transport 69.5 46 0.001 27.7 8.9 92 24-117 141-246 (369)
73 PRK09423 gldA glycerol dehydro 69.4 14 0.0003 31.2 5.8 74 28-103 15-100 (366)
74 cd06367 PBP1_iGluR_NMDA N-term 68.8 34 0.00073 27.9 7.8 91 21-112 114-219 (362)
75 cd06368 PBP1_iGluR_non_NMDA_li 68.5 36 0.00078 26.9 7.7 90 22-112 106-205 (324)
76 cd08186 Fe-ADH8 Iron-containin 67.8 21 0.00046 30.4 6.6 67 30-96 10-93 (383)
77 cd01025 TOPRIM_recR TOPRIM_rec 66.7 16 0.00035 26.8 4.9 59 29-88 43-112 (112)
78 cd06393 PBP1_iGluR_Kainate_Glu 66.6 39 0.00085 28.1 7.9 94 19-113 115-218 (384)
79 PRK05583 ribosomal protein L7A 66.5 22 0.00048 25.4 5.6 60 33-93 24-84 (104)
80 PRK05282 (alpha)-aspartyl dipe 66.5 8.5 0.00018 31.3 3.8 73 17-101 14-93 (233)
81 smart00187 INB Integrin beta s 66.2 24 0.00052 31.6 6.8 63 18-87 270-335 (423)
82 cd08183 Fe-ADH2 Iron-containin 65.6 22 0.00047 30.1 6.2 67 30-98 10-86 (374)
83 PF06180 CbiK: Cobalt chelatas 64.9 8 0.00017 32.1 3.4 50 24-74 151-202 (262)
84 COG1246 ArgA N-acetylglutamate 64.5 7.9 0.00017 30.1 3.1 31 28-59 84-115 (153)
85 TIGR03863 PQQ_ABC_bind ABC tra 64.2 20 0.00044 30.1 5.8 51 22-73 107-161 (347)
86 cd03413 CbiK_C Anaerobic cobal 64.0 21 0.00045 25.3 5.0 45 28-73 15-60 (103)
87 PRK10586 putative oxidoreducta 63.9 21 0.00046 30.5 5.9 70 28-98 19-97 (362)
88 TIGR01279 DPOR_bchN light-inde 63.9 27 0.00059 30.1 6.6 28 81-114 336-364 (407)
89 cd08177 MAR Maleylacetate redu 63.8 23 0.0005 29.5 6.0 71 29-100 9-90 (337)
90 PF13155 Toprim_2: Toprim-like 63.7 18 0.00039 24.1 4.5 46 22-68 25-75 (96)
91 cd08170 GlyDH Glycerol dehydro 63.3 20 0.00044 29.9 5.6 82 30-113 10-103 (351)
92 PF06258 Mito_fiss_Elm1: Mitoc 61.9 47 0.001 27.9 7.6 67 28-98 168-239 (311)
93 PF10879 DUF2674: Protein of u 61.8 10 0.00022 25.4 2.8 25 51-76 12-37 (67)
94 cd06364 PBP1_CaSR Ligand-bindi 61.7 49 0.0011 29.2 8.0 96 21-117 165-274 (510)
95 cd06339 PBP1_YraM_LppC_lipopro 61.6 36 0.00079 27.7 6.7 84 22-106 103-220 (336)
96 TIGR01056 topB DNA topoisomera 61.3 12 0.00027 34.6 4.3 41 24-65 77-121 (660)
97 PF04013 Methyltrn_RNA_2: Puta 61.3 20 0.00042 29.0 4.9 41 45-85 147-188 (199)
98 cd08169 DHQ-like Dehydroquinat 60.9 25 0.00054 29.8 5.7 65 30-95 10-91 (344)
99 PRK14824 putative deoxyribonuc 60.9 10 0.00022 30.3 3.2 29 46-74 2-30 (201)
100 cd06370 PBP1_Speract_GC_like L 60.8 25 0.00055 29.4 5.8 51 22-73 115-169 (404)
101 cd06327 PBP1_SBP_like_1 Peripl 60.6 71 0.0015 25.5 8.1 89 22-112 114-215 (334)
102 cd03363 TOPRIM_TopoIA_TopoI TO 60.6 24 0.00052 25.6 5.0 38 25-65 57-98 (123)
103 cd08175 G1PDH Glycerol-1-phosp 60.6 30 0.00065 28.9 6.1 68 30-98 10-91 (348)
104 cd06268 PBP1_ABC_transporter_L 60.5 69 0.0015 23.9 8.8 95 24-120 115-223 (298)
105 PRK09190 hypothetical protein; 59.7 27 0.00059 28.4 5.5 72 42-113 126-208 (220)
106 cd06371 PBP1_sensory_GC_DEF_li 59.6 58 0.0013 27.2 7.7 72 22-97 114-198 (382)
107 TIGR03407 urea_ABC_UrtA urea A 59.1 55 0.0012 26.9 7.4 80 29-109 120-212 (359)
108 cd06363 PBP1_Taste_receptor Li 58.9 56 0.0012 27.4 7.5 81 22-103 155-250 (410)
109 COG0556 UvrB Helicase subunit 58.8 31 0.00067 32.4 6.3 75 27-113 432-513 (663)
110 cd06329 PBP1_SBP_like_3 Peripl 58.7 91 0.002 25.1 8.5 93 25-118 124-232 (342)
111 cd08172 GlyDH-like1 Glycerol d 58.5 29 0.00064 29.0 5.7 68 30-99 11-88 (347)
112 cd03146 GAT1_Peptidase_E Type 58.3 31 0.00066 27.0 5.5 63 43-107 31-99 (212)
113 TIGR00236 wecB UDP-N-acetylglu 58.0 81 0.0018 25.8 8.2 82 27-114 214-296 (365)
114 PRK14821 putative deoxyribonuc 57.8 13 0.00028 29.1 3.3 29 46-74 2-30 (184)
115 COG0127 Xanthosine triphosphat 57.8 13 0.00029 29.8 3.4 30 45-74 2-31 (194)
116 PF01936 NYN: NYN domain; Int 57.3 45 0.00097 23.3 5.8 49 43-92 95-143 (146)
117 cd06356 PBP1_Amide_Urea_BP_lik 57.1 82 0.0018 25.4 8.0 80 31-112 120-212 (334)
118 KOG2931|consensus 56.9 17 0.00036 31.5 4.0 85 23-112 101-214 (326)
119 PF01512 Complex1_51K: Respira 56.8 23 0.00049 26.5 4.4 48 26-74 51-106 (151)
120 KOG3916|consensus 56.4 5.8 0.00013 34.8 1.2 41 77-121 245-287 (372)
121 PRK14822 nucleoside-triphospha 56.4 14 0.00029 29.5 3.2 29 46-74 3-31 (200)
122 cd06347 PBP1_ABC_ligand_bindin 56.2 97 0.0021 24.3 8.6 89 25-114 116-218 (334)
123 cd06394 PBP1_iGluR_Kainate_KA1 56.2 67 0.0015 27.0 7.6 91 25-116 116-215 (333)
124 PRK10916 ADP-heptose:LPS hepto 56.1 39 0.00085 27.8 6.0 91 20-120 193-290 (348)
125 cd06351 PBP1_iGluR_N_LIVBP_lik 55.5 76 0.0017 24.7 7.3 84 19-103 108-202 (328)
126 PF13662 Toprim_4: Toprim doma 55.4 20 0.00043 23.6 3.5 28 44-71 46-77 (81)
127 PRK00120 dITP/XTP pyrophosphat 55.2 14 0.0003 29.3 3.1 29 46-74 2-30 (196)
128 cd08178 AAD_C C-terminal alcoh 55.1 43 0.00094 28.6 6.3 54 43-96 20-87 (398)
129 PRK01018 50S ribosomal protein 55.0 38 0.00082 23.8 5.0 51 34-85 24-76 (99)
130 TIGR01054 rgy reverse gyrase. 55.0 22 0.00047 35.4 5.0 38 25-65 704-745 (1171)
131 PF13685 Fe-ADH_2: Iron-contai 54.9 21 0.00046 29.3 4.2 76 29-105 5-93 (250)
132 PF10662 PduV-EutP: Ethanolami 54.7 30 0.00065 26.3 4.7 43 22-65 99-142 (143)
133 cd05796 Ribosomal_P0_like Ribo 54.6 39 0.00084 25.7 5.4 72 26-101 2-86 (163)
134 PF13727 CoA_binding_3: CoA-bi 54.5 25 0.00054 25.1 4.2 41 31-72 130-172 (175)
135 PRK07220 DNA topoisomerase I; 54.2 20 0.00043 33.8 4.4 29 25-56 82-110 (740)
136 PF11495 Regulator_TrmB: Archa 53.9 32 0.00069 27.2 5.0 47 25-74 6-55 (233)
137 PRK00843 egsA NAD(P)-dependent 53.7 47 0.001 28.0 6.2 66 29-95 19-95 (350)
138 smart00493 TOPRIM topoisomeras 53.6 31 0.00068 21.8 4.1 21 45-65 48-72 (76)
139 cd08550 GlyDH-like Glycerol_de 52.8 45 0.00097 27.9 6.0 67 30-98 10-88 (349)
140 cd08197 DOIS 2-deoxy-scyllo-in 52.6 44 0.00095 28.5 5.9 65 30-95 10-92 (355)
141 PRK06319 DNA topoisomerase I/S 52.5 22 0.00047 34.1 4.4 39 24-65 57-99 (860)
142 cd06358 PBP1_NHase Type I peri 52.5 1.2E+02 0.0026 24.3 9.1 87 25-113 114-213 (333)
143 cd06386 PBP1_NPR_C_like Ligand 52.3 1.3E+02 0.0029 25.1 8.7 92 20-113 114-220 (387)
144 cd06373 PBP1_NPR_like Ligand b 52.1 43 0.00094 27.7 5.7 82 20-103 119-217 (396)
145 cd08173 Gro1PDH Sn-glycerol-1- 52.1 46 0.001 27.7 5.9 67 30-96 11-87 (339)
146 PF01488 Shikimate_DH: Shikima 51.4 60 0.0013 23.4 5.8 77 29-111 22-98 (135)
147 COG4917 EutP Ethanolamine util 51.2 39 0.00084 26.2 4.8 44 21-66 99-143 (148)
148 PRK14719 bifunctional RNAse/5- 51.2 23 0.0005 30.6 4.1 56 9-73 41-100 (360)
149 COG1110 Reverse gyrase [DNA re 51.2 26 0.00056 35.1 4.7 86 30-120 323-416 (1187)
150 PRK02135 hypothetical protein; 51.0 22 0.00047 28.8 3.6 42 43-84 145-187 (201)
151 PF01725 Ham1p_like: Ham1 fami 51.0 15 0.00033 28.6 2.6 28 47-74 1-28 (189)
152 cd06326 PBP1_STKc_like Type I 50.9 1E+02 0.0023 24.3 7.5 88 24-113 117-217 (336)
153 PRK07219 DNA topoisomerase I; 50.6 23 0.0005 33.6 4.3 30 24-56 81-110 (822)
154 cd04197 eIF-2B_epsilon_N The N 48.8 37 0.0008 26.0 4.5 56 8-66 7-66 (217)
155 PF08032 SpoU_sub_bind: RNA 2' 48.6 43 0.00093 21.3 4.2 42 33-74 7-49 (76)
156 cd08556 GDPD Glycerophosphodie 48.0 87 0.0019 22.7 6.3 94 28-122 75-171 (189)
157 cd03789 GT1_LPS_heptosyltransf 47.7 95 0.0021 24.5 6.8 90 20-120 133-227 (279)
158 PRK08575 5-methyltetrahydropte 47.2 29 0.00063 29.1 4.0 32 21-54 269-300 (326)
159 cd06375 PBP1_mGluR_groupII Lig 47.2 75 0.0016 27.5 6.6 93 20-113 151-258 (458)
160 COG1212 KdsB CMP-2-keto-3-deox 47.1 43 0.00092 28.1 4.8 28 27-56 28-55 (247)
161 cd06365 PBP1_Pheromone_recepto 47.1 78 0.0017 27.4 6.7 78 19-97 148-241 (469)
162 cd06362 PBP1_mGluR Ligand bind 46.7 1.1E+02 0.0023 25.9 7.3 75 22-97 151-240 (452)
163 PF13458 Peripla_BP_6: Peripla 46.7 1.2E+02 0.0025 23.9 7.2 85 25-110 116-214 (343)
164 cd06333 PBP1_ABC-type_HAAT_lik 46.4 1.4E+02 0.0031 23.4 8.4 93 24-118 114-219 (312)
165 PF13380 CoA_binding_2: CoA bi 46.3 70 0.0015 22.8 5.4 28 43-72 79-106 (116)
166 PRK02491 putative deoxyribonuc 46.1 23 0.00049 30.7 3.2 30 45-74 128-157 (328)
167 PF01408 GFO_IDH_MocA: Oxidore 45.8 92 0.002 21.0 6.4 38 34-73 54-91 (120)
168 cd03821 GT1_Bme6_like This fam 45.8 1.3E+02 0.0029 22.8 8.2 87 26-113 217-307 (375)
169 TIGR02990 ectoine_eutA ectoine 45.7 50 0.0011 26.8 5.0 41 32-73 109-150 (239)
170 PF04900 Fcf1: Fcf1; InterPro 45.7 20 0.00043 24.8 2.4 49 18-74 39-91 (101)
171 PF01094 ANF_receptor: Recepto 45.6 42 0.00091 26.3 4.4 83 20-103 98-195 (348)
172 PRK09401 reverse gyrase; Revie 45.5 32 0.0007 34.2 4.5 38 25-65 704-745 (1176)
173 cd03364 TOPRIM_DnaG_primases T 44.9 29 0.00063 22.7 3.0 28 44-71 43-74 (79)
174 COG1412 Uncharacterized protei 44.8 28 0.0006 26.5 3.2 38 29-74 85-123 (136)
175 PRK14823 putative deoxyribonuc 44.6 26 0.00057 27.6 3.2 28 46-74 2-29 (191)
176 cd08549 G1PDH_related Glycerol 44.5 64 0.0014 26.9 5.6 64 30-95 10-88 (332)
177 PRK05582 DNA topoisomerase I; 44.5 35 0.00076 31.5 4.3 93 24-119 57-193 (650)
178 COG1901 Uncharacterized conser 44.3 28 0.0006 28.3 3.2 43 43-85 143-186 (197)
179 PF03108 DBD_Tnp_Mut: MuDR fam 44.3 44 0.00095 21.3 3.7 38 16-54 2-39 (67)
180 PRK07726 DNA topoisomerase III 44.2 28 0.0006 32.3 3.7 39 24-65 76-118 (658)
181 PF13707 RloB: RloB-like prote 44.0 86 0.0019 23.3 5.8 66 25-91 38-111 (183)
182 PF02639 DUF188: Uncharacteriz 44.0 73 0.0016 23.7 5.3 48 34-89 2-50 (130)
183 PRK12613 galactose-6-phosphate 44.0 25 0.00054 26.9 2.8 29 46-74 2-32 (141)
184 PRK05298 excinuclease ABC subu 44.0 55 0.0012 30.3 5.5 67 26-95 431-504 (652)
185 PF14201 DUF4318: Domain of un 43.8 66 0.0014 22.1 4.6 37 17-54 7-43 (74)
186 PRK00002 aroB 3-dehydroquinate 43.7 72 0.0015 26.9 5.8 42 29-71 17-61 (358)
187 TIGR02195 heptsyl_trn_II lipop 43.7 98 0.0021 25.1 6.5 35 81-120 245-280 (334)
188 KOG2872|consensus 43.4 34 0.00074 29.8 3.8 52 19-74 225-278 (359)
189 TIGR01286 nifK nitrogenase mol 43.4 1.1E+02 0.0024 27.6 7.3 54 43-96 386-446 (515)
190 PF09936 Methyltrn_RNA_4: SAM- 43.1 1E+02 0.0022 24.8 6.3 72 17-92 80-157 (185)
191 PF04392 ABC_sub_bind: ABC tra 43.0 86 0.0019 25.2 6.0 64 29-92 116-189 (294)
192 COG0550 TopA Topoisomerase IA 43.0 31 0.00067 31.8 3.7 37 27-66 63-103 (570)
193 PF00466 Ribosomal_L10: Riboso 42.8 68 0.0015 21.7 4.7 45 26-73 5-52 (100)
194 PRK09121 5-methyltetrahydropte 42.7 24 0.00052 29.9 2.8 33 21-54 279-311 (339)
195 cd00515 HAM1 NTPase/HAM1. Thi 42.5 23 0.00049 27.6 2.5 29 47-75 1-29 (183)
196 cd03008 TryX_like_RdCVF Trypar 42.2 48 0.001 25.0 4.1 25 43-69 65-89 (146)
197 PRK14826 putative deoxyribonuc 42.1 29 0.00064 28.1 3.1 31 44-74 8-40 (222)
198 COG0620 MetE Methionine syntha 41.7 35 0.00075 29.2 3.7 33 21-54 272-304 (330)
199 PF00665 rve: Integrase core d 41.3 46 0.001 22.3 3.6 51 25-76 47-101 (120)
200 cd01974 Nitrogenase_MoFe_beta 41.3 99 0.0021 26.8 6.5 16 81-96 371-386 (435)
201 COG4087 Soluble P-type ATPase 41.2 1E+02 0.0022 24.1 5.7 34 24-64 32-66 (152)
202 PF13905 Thioredoxin_8: Thiore 41.1 97 0.0021 20.0 5.1 43 30-74 19-66 (95)
203 TIGR01118 lacA galactose-6-pho 41.0 29 0.00064 26.5 2.8 29 46-74 2-32 (141)
204 KOG1482|consensus 41.0 9.6 0.00021 33.6 0.2 35 29-64 82-116 (379)
205 PF06506 PrpR_N: Propionate ca 40.8 87 0.0019 23.6 5.4 70 25-97 61-135 (176)
206 cd08174 G1PDH-like Glycerol-1- 40.6 1E+02 0.0023 25.5 6.3 66 29-96 9-84 (331)
207 PRK00121 trmB tRNA (guanine-N( 40.6 32 0.0007 26.5 3.1 43 27-72 135-177 (202)
208 PRK01207 methionine synthase; 40.0 42 0.0009 29.1 3.9 34 21-54 283-316 (343)
209 COG4822 CbiK Cobalamin biosynt 39.9 49 0.0011 27.8 4.1 53 30-83 154-214 (265)
210 PRK05222 5-methyltetrahydropte 39.7 39 0.00084 32.0 3.9 34 20-54 696-729 (758)
211 TIGR00042 non-canonical purine 39.6 32 0.0007 26.9 2.9 28 47-74 2-29 (184)
212 PRK09191 two-component respons 39.2 1.7E+02 0.0037 22.2 7.1 46 28-73 119-166 (261)
213 TIGR01283 nifE nitrogenase mol 39.2 46 0.00099 29.1 4.1 76 45-120 198-280 (456)
214 PRK08621 galactose-6-phosphate 39.2 37 0.0008 26.0 3.1 29 46-74 2-32 (142)
215 KOG2299|consensus 39.1 46 0.00099 28.5 3.9 49 25-73 120-170 (301)
216 PRK06520 5-methyltetrahydropte 39.1 26 0.00057 30.0 2.6 35 19-54 304-338 (368)
217 COG5561 Predicted metal-bindin 39.1 63 0.0014 23.5 4.1 44 28-72 42-94 (101)
218 cd00379 Ribosomal_L10_P0 Ribos 39.0 1.1E+02 0.0024 22.1 5.6 45 26-73 2-51 (155)
219 cd06361 PBP1_GPC6A_like Ligand 38.8 1.4E+02 0.0031 25.3 7.0 93 19-112 148-259 (403)
220 PTZ00240 60S ribosomal protein 38.7 74 0.0016 27.4 5.2 72 27-101 8-99 (323)
221 PRK00654 glgA glycogen synthas 38.7 1.3E+02 0.0028 25.9 6.7 85 27-113 297-382 (466)
222 TIGR01051 topA_bact DNA topois 38.2 49 0.0011 30.4 4.3 39 24-65 53-95 (610)
223 TIGR00091 tRNA (guanine-N(7)-) 38.2 42 0.00092 25.5 3.4 38 28-68 112-149 (194)
224 PHA02588 cd deoxycytidylate de 38.1 68 0.0015 24.7 4.5 33 43-75 122-154 (168)
225 COG0320 LipA Lipoate synthase 38.1 1.1E+02 0.0023 26.5 6.0 61 32-95 103-180 (306)
226 PF10941 DUF2620: Protein of u 38.0 47 0.001 24.9 3.4 29 85-113 42-70 (117)
227 cd03466 Nitrogenase_NifN_2 Nit 37.9 1.6E+02 0.0035 25.5 7.2 14 84-97 369-382 (429)
228 TIGR02159 PA_CoA_Oxy4 phenylac 37.9 72 0.0016 24.2 4.5 45 24-69 38-88 (146)
229 PRK06233 hypothetical protein; 37.7 31 0.00068 29.6 2.8 35 19-54 307-341 (372)
230 PF13344 Hydrolase_6: Haloacid 37.4 49 0.0011 22.9 3.3 43 23-71 15-58 (101)
231 PF03610 EIIA-man: PTS system 37.2 1.4E+02 0.003 20.8 5.7 49 26-74 39-90 (116)
232 PRK08178 acetolactate synthase 37.2 43 0.00093 24.1 3.0 37 28-64 59-95 (96)
233 PRK04175 rpl7ae 50S ribosomal 37.0 85 0.0018 23.0 4.7 34 43-76 46-81 (122)
234 PRK05776 DNA topoisomerase I; 36.8 49 0.0011 30.9 4.1 90 28-120 84-222 (670)
235 PRK00099 rplJ 50S ribosomal pr 36.7 1.1E+02 0.0025 23.0 5.5 45 26-73 5-54 (172)
236 PLN02846 digalactosyldiacylgly 36.2 2.3E+02 0.0049 25.4 8.0 83 27-113 243-326 (462)
237 cd06330 PBP1_Arsenic_SBP_like 36.2 2.2E+02 0.0048 22.7 7.8 88 22-109 115-218 (346)
238 PRK14973 DNA topoisomerase I; 36.1 53 0.0011 32.1 4.3 29 25-56 81-109 (936)
239 PF13531 SBP_bac_11: Bacterial 35.5 35 0.00077 25.9 2.5 50 46-95 2-55 (230)
240 cd08184 Fe-ADH3 Iron-containin 35.5 1.5E+02 0.0032 25.3 6.5 67 30-97 10-91 (347)
241 KOG1975|consensus 35.4 43 0.00093 29.7 3.3 40 23-63 209-250 (389)
242 cd03805 GT1_ALG2_like This fam 35.2 2.4E+02 0.0051 22.7 7.8 88 26-113 225-325 (392)
243 PRK12483 threonine dehydratase 35.2 49 0.0011 30.1 3.7 75 14-89 342-435 (521)
244 PRK05571 ribose-5-phosphate is 35.1 41 0.00089 25.8 2.8 29 46-74 2-32 (148)
245 TIGR02015 BchY chlorophyllide 35.1 1.3E+02 0.0029 26.2 6.3 80 34-120 300-382 (422)
246 PLN02475 5-methyltetrahydropte 35.0 55 0.0012 31.2 4.2 45 20-65 702-749 (766)
247 PTZ00215 ribose 5-phosphate is 34.9 53 0.0011 25.3 3.4 30 45-74 3-36 (151)
248 cd01980 Chlide_reductase_Y Chl 34.8 97 0.0021 26.8 5.4 28 45-73 281-308 (416)
249 COG4026 Uncharacterized protei 34.8 46 0.001 28.1 3.2 44 43-86 57-109 (290)
250 PRK14825 putative deoxyribonuc 34.7 46 0.001 26.4 3.2 30 45-74 2-31 (199)
251 cd03786 GT1_UDP-GlcNAc_2-Epime 34.6 2E+02 0.0044 22.9 6.9 64 46-114 232-299 (363)
252 TIGR01120 rpiB ribose 5-phosph 34.2 36 0.00079 25.9 2.4 29 46-74 1-31 (143)
253 PF12965 DUF3854: Domain of un 34.1 81 0.0018 23.3 4.2 45 43-87 67-125 (130)
254 PRK00124 hypothetical protein; 34.0 1.3E+02 0.0029 23.2 5.5 53 30-89 12-66 (151)
255 PF01248 Ribosomal_L7Ae: Ribos 33.7 1.4E+02 0.003 20.0 5.1 42 33-75 22-65 (95)
256 PF02350 Epimerase_2: UDP-N-ac 33.7 1.3E+02 0.0029 25.3 5.9 82 26-114 198-280 (346)
257 PRK04017 hypothetical protein; 33.6 43 0.00094 25.4 2.7 29 43-71 64-96 (132)
258 TIGR01285 nifN nitrogenase mol 33.5 1.9E+02 0.0042 25.2 7.1 64 32-97 300-383 (432)
259 cd07022 S49_Sppa_36K_type Sign 33.5 2.3E+02 0.005 22.0 7.1 91 21-112 21-127 (214)
260 PF00362 Integrin_beta: Integr 33.3 1.3E+02 0.0028 26.7 5.9 59 19-84 274-335 (426)
261 cd08179 NADPH_BDH NADPH-depend 33.2 1.5E+02 0.0032 25.2 6.1 55 44-98 23-92 (375)
262 TIGR00631 uvrb excinuclease AB 33.2 96 0.0021 28.9 5.4 45 27-74 428-472 (655)
263 cd06352 PBP1_NPR_GC_like Ligan 33.1 1.5E+02 0.0033 24.1 6.0 88 19-108 113-216 (389)
264 PF01206 TusA: Sulfurtransfera 33.1 1E+02 0.0022 19.5 4.1 42 33-74 16-57 (70)
265 PF04566 RNA_pol_Rpb2_4: RNA p 32.7 1E+02 0.0022 20.2 4.1 30 25-54 12-52 (63)
266 TIGR01119 lacB galactose-6-pho 32.7 47 0.001 26.2 2.8 29 46-74 2-32 (171)
267 smart00448 REC cheY-homologous 32.7 71 0.0015 15.9 4.2 30 46-75 2-31 (55)
268 COG4656 RnfC Predicted NADH:ub 32.6 1.3E+02 0.0028 27.9 5.9 47 27-74 180-229 (529)
269 cd00291 SirA_YedF_YeeD SirA, Y 32.5 1.3E+02 0.0027 18.7 4.9 42 33-74 15-56 (69)
270 cd06374 PBP1_mGluR_groupI Liga 32.3 1.3E+02 0.0027 26.0 5.7 51 21-72 164-218 (472)
271 TIGR01057 topA_arch DNA topois 32.2 71 0.0015 29.3 4.3 90 28-120 81-219 (618)
272 PRK08622 galactose-6-phosphate 32.2 48 0.001 26.2 2.8 29 46-74 2-32 (171)
273 cd03145 GAT1_cyanophycinase Ty 32.1 1.7E+02 0.0036 23.0 5.9 45 25-70 12-59 (217)
274 PRK14089 ipid-A-disaccharide s 32.1 1.2E+02 0.0026 26.0 5.4 41 45-85 77-133 (347)
275 TIGR00334 5S_RNA_mat_M5 ribonu 32.0 75 0.0016 25.2 3.9 35 28-66 35-69 (174)
276 cd01301 rDP_like renal dipepti 32.0 64 0.0014 27.1 3.7 30 23-53 236-265 (309)
277 TIGR01091 upp uracil phosphori 31.9 1E+02 0.0022 24.2 4.6 39 32-73 139-179 (207)
278 COG1658 Small primase-like pro 31.9 81 0.0018 23.7 3.9 40 43-88 54-95 (127)
279 PRK10124 putative UDP-glucose 31.7 1.2E+02 0.0025 26.8 5.4 44 32-76 193-238 (463)
280 TIGR03787 marine_sort_RR prote 31.6 86 0.0019 23.0 4.0 10 31-40 13-22 (227)
281 cd05797 Ribosomal_L10 Ribosoma 31.6 1.3E+02 0.0029 22.1 5.1 45 26-73 4-53 (157)
282 cd04509 PBP1_ABC_transporter_G 31.6 2.2E+02 0.0048 21.2 8.7 88 23-112 116-216 (299)
283 cd03129 GAT1_Peptidase_E_like 31.4 1.9E+02 0.004 22.2 6.0 58 43-100 29-93 (210)
284 cd03813 GT1_like_3 This family 31.4 2.5E+02 0.0054 24.2 7.4 86 26-113 307-396 (475)
285 TIGR02201 heptsyl_trn_III lipo 31.0 2.9E+02 0.0063 22.5 7.5 33 82-119 255-288 (344)
286 KOG1752|consensus 31.0 2E+02 0.0044 20.6 6.3 51 33-87 6-62 (104)
287 cd05795 Ribosomal_P0_L10e Ribo 30.9 1.2E+02 0.0025 23.3 4.8 44 27-73 3-50 (175)
288 COG1540 Uncharacterized protei 30.9 1.1E+02 0.0025 25.6 4.9 49 25-73 188-250 (252)
289 PRK02842 light-independent pro 30.8 1.7E+02 0.0036 25.4 6.2 15 81-95 353-368 (427)
290 PRK12615 galactose-6-phosphate 30.8 1.1E+02 0.0023 24.2 4.6 29 46-74 2-32 (171)
291 TIGR03471 HpnJ hopanoid biosyn 30.8 1.4E+02 0.003 26.0 5.8 44 26-69 228-275 (472)
292 KOG0053|consensus 30.7 1.1E+02 0.0024 27.3 5.2 67 43-109 162-250 (409)
293 cd07018 S49_SppA_67K_type Sign 30.7 2E+02 0.0043 22.5 6.1 89 24-113 28-132 (222)
294 cd04951 GT1_WbdM_like This fam 30.6 2.6E+02 0.0056 21.7 7.0 84 27-113 203-288 (360)
295 PF05014 Nuc_deoxyrib_tr: Nucl 30.5 68 0.0015 22.2 3.1 19 77-95 51-69 (113)
296 cd01542 PBP1_TreR_like Ligand- 30.4 1.6E+02 0.0034 22.0 5.4 29 23-52 10-38 (259)
297 COG0414 PanC Panthothenate syn 30.3 2.7E+02 0.0059 23.8 7.2 64 25-90 5-87 (285)
298 cd06109 BsCS-I_like Bacillus s 30.1 29 0.00062 29.9 1.3 26 77-104 156-181 (349)
299 cd00530 PTE Phosphotriesterase 30.1 73 0.0016 25.3 3.6 31 26-57 219-249 (293)
300 TIGR01945 rnfC electron transp 29.9 1.6E+02 0.0034 25.9 5.9 47 27-74 180-228 (435)
301 COG3581 Uncharacterized protei 29.8 1.1E+02 0.0024 27.6 4.9 76 18-93 44-138 (420)
302 PF13730 HTH_36: Helix-turn-he 29.7 41 0.00088 20.3 1.7 13 23-35 24-36 (55)
303 PF13362 Toprim_3: Toprim doma 29.7 1.2E+02 0.0026 20.3 4.2 32 43-74 40-77 (96)
304 KOG0124|consensus 29.5 1.2E+02 0.0027 27.4 5.2 56 7-67 178-234 (544)
305 TIGR03088 stp2 sugar transfera 29.4 2.3E+02 0.0051 22.7 6.5 84 27-113 209-298 (374)
306 cd01979 Pchlide_reductase_N Pc 29.2 2E+02 0.0043 24.6 6.3 30 43-73 275-304 (396)
307 PF08915 tRNA-Thr_ED: Archaea- 29.2 1.8E+02 0.0039 22.3 5.4 47 27-74 56-114 (138)
308 PF12982 DUF3866: Protein of u 29.2 1.1E+02 0.0024 26.6 4.7 32 42-73 113-149 (320)
309 cd03311 CIMS_C_terminal_like C 29.0 53 0.0011 27.1 2.7 34 20-54 277-310 (332)
310 cd04883 ACT_AcuB C-terminal AC 28.9 1.4E+02 0.0029 18.4 4.1 47 24-72 8-69 (72)
311 PF01244 Peptidase_M19: Membra 28.9 96 0.0021 26.1 4.3 46 22-68 243-300 (320)
312 COG1355 Predicted dioxygenase 28.8 75 0.0016 27.1 3.6 28 27-56 167-195 (279)
313 PTZ00135 60S acidic ribosomal 28.7 1.7E+02 0.0037 24.9 5.7 67 27-100 10-91 (310)
314 PRK05749 3-deoxy-D-manno-octul 28.7 2.4E+02 0.0052 23.6 6.6 86 27-114 246-347 (425)
315 TIGR00824 EIIA-man PTS system, 28.7 2.2E+02 0.0047 20.2 5.6 48 26-73 40-90 (116)
316 cd02974 AhpF_NTD_N Alkyl hydro 28.6 1.6E+02 0.0035 20.5 4.8 39 28-66 4-42 (94)
317 TIGR03025 EPS_sugtrans exopoly 28.6 1.2E+02 0.0026 26.0 4.9 44 32-76 178-223 (445)
318 cd01169 HMPP_kinase 4-amino-5- 28.4 2.4E+02 0.0053 21.5 6.2 69 26-95 52-136 (242)
319 TIGR00689 rpiB_lacA_lacB sugar 28.4 44 0.00096 25.5 2.0 28 47-74 1-30 (144)
320 cd03818 GT1_ExpC_like This fam 28.3 3.4E+02 0.0073 22.3 8.5 88 26-113 226-326 (396)
321 PRK13912 nuclease NucT; Provis 28.3 1.2E+02 0.0027 22.9 4.5 62 7-74 13-78 (177)
322 PRK14099 glycogen synthase; Pr 28.0 2.3E+02 0.005 24.9 6.7 81 28-112 311-394 (485)
323 COG1827 Predicted small molecu 28.0 1.5E+02 0.0032 23.4 4.9 39 15-55 104-142 (168)
324 PF01320 Colicin_Pyocin: Colic 27.9 65 0.0014 22.7 2.6 16 26-41 63-78 (85)
325 TIGR02069 cyanophycinase cyano 27.8 1.6E+02 0.0034 24.0 5.2 69 28-98 14-93 (250)
326 KOG2836|consensus 27.6 1E+02 0.0022 24.3 3.8 54 25-84 25-85 (173)
327 PF12221 HflK_N: Bacterial mem 27.6 63 0.0014 19.9 2.2 18 24-41 20-37 (42)
328 TIGR03023 WcaJ_sugtrans Undeca 27.6 1.5E+02 0.0033 25.5 5.3 44 32-76 181-226 (451)
329 cd02968 SCO SCO (an acronym fo 27.6 2.1E+02 0.0045 19.7 5.3 32 43-74 59-93 (142)
330 TIGR02133 RPI_actino ribose 5- 27.6 66 0.0014 24.6 2.8 29 46-74 2-32 (148)
331 KOG2331|consensus 27.5 2.1E+02 0.0046 26.3 6.3 85 22-106 182-286 (526)
332 PRK09545 znuA high-affinity zi 27.5 1.6E+02 0.0034 24.6 5.3 46 24-74 235-281 (311)
333 cd08195 DHQS Dehydroquinate sy 27.3 2.1E+02 0.0045 24.0 6.0 40 30-69 10-52 (345)
334 COG1737 RpiR Transcriptional r 27.3 1.5E+02 0.0033 24.1 5.1 70 37-106 123-196 (281)
335 PF11181 YflT: Heat induced st 27.1 1.4E+02 0.003 20.8 4.2 38 24-61 6-43 (103)
336 PF08543 Phos_pyr_kin: Phospho 27.1 1.9E+02 0.0042 22.8 5.6 75 20-95 38-127 (246)
337 COG1671 Uncharacterized protei 27.1 1.7E+02 0.0038 22.7 5.1 52 30-89 13-65 (150)
338 cd06167 LabA_like LabA_like pr 27.1 2.3E+02 0.005 20.0 6.4 62 28-92 86-147 (149)
339 PTZ00365 60S ribosomal protein 26.9 2.2E+02 0.0047 24.2 6.0 62 31-93 137-200 (266)
340 TIGR03677 rpl7ae 50S ribosomal 26.9 1.5E+02 0.0032 21.5 4.5 41 34-75 34-76 (117)
341 cd04882 ACT_Bt0572_2 C-termina 26.8 1.5E+02 0.0032 17.7 4.1 44 24-71 6-64 (65)
342 PRK10422 lipopolysaccharide co 26.6 3.6E+02 0.0078 22.2 7.3 35 80-119 255-290 (352)
343 PF02502 LacAB_rpiB: Ribose/Ga 26.6 68 0.0015 24.2 2.7 29 46-74 1-31 (140)
344 TIGR01096 3A0103s03R lysine-ar 26.6 1.1E+02 0.0025 23.0 4.0 36 60-96 146-182 (250)
345 PF06908 DUF1273: Protein of u 26.5 1.9E+02 0.0042 22.5 5.3 83 9-92 7-106 (177)
346 PF01177 Asp_Glu_race: Asp/Glu 26.5 2.8E+02 0.006 20.7 6.1 45 28-73 161-206 (216)
347 cd00899 b4GalT Beta-4-Galactos 26.5 46 0.00099 27.1 1.9 19 103-121 120-138 (219)
348 PRK13398 3-deoxy-7-phosphohept 26.4 2.7E+02 0.0059 22.9 6.5 65 18-83 30-107 (266)
349 cd03817 GT1_UGDG_like This fam 26.2 2.9E+02 0.0064 20.9 8.2 86 26-113 216-304 (374)
350 COG2355 Zn-dependent dipeptida 26.1 88 0.0019 26.9 3.6 30 24-54 234-263 (313)
351 COG1564 THI80 Thiamine pyropho 26.1 44 0.00096 27.1 1.7 52 43-95 41-112 (212)
352 cd06267 PBP1_LacI_sugar_bindin 25.8 1.5E+02 0.0033 21.7 4.5 35 78-113 46-80 (264)
353 PRK04019 rplP0 acidic ribosoma 25.5 2.1E+02 0.0045 24.3 5.7 70 26-100 7-87 (330)
354 PF02829 3H: 3H domain; Inter 25.4 91 0.002 22.3 3.0 58 12-69 31-96 (98)
355 PRK14098 glycogen synthase; Pr 25.2 3.3E+02 0.0073 24.0 7.2 85 27-113 322-407 (489)
356 PRK14701 reverse gyrase; Provi 25.2 1E+02 0.0022 32.1 4.3 92 25-119 685-820 (1638)
357 cd03422 YedF YedF is a bacteri 25.1 2E+02 0.0043 18.5 4.6 42 33-74 15-56 (69)
358 cd01965 Nitrogenase_MoFe_beta_ 25.1 2.6E+02 0.0057 24.0 6.4 10 87-96 371-380 (428)
359 PRK09224 threonine dehydratase 25.0 77 0.0017 28.4 3.2 76 14-89 325-418 (504)
360 PF01717 Meth_synt_2: Cobalami 25.0 57 0.0012 26.9 2.2 31 23-54 272-302 (324)
361 PRK13368 3-deoxy-manno-octulos 24.9 2E+02 0.0043 21.9 5.1 34 36-73 35-68 (238)
362 TIGR00644 recJ single-stranded 24.9 3.3E+02 0.0072 24.5 7.2 82 17-101 30-127 (539)
363 KOG3010|consensus 24.9 18 0.00039 30.5 -0.7 46 49-94 59-115 (261)
364 cd01465 vWA_subgroup VWA subgr 24.9 1.8E+02 0.0039 20.6 4.6 31 44-74 97-135 (170)
365 TIGR03730 tungstate_WtpA tungs 24.8 82 0.0018 26.0 3.1 51 46-96 4-60 (273)
366 TIGR00705 SppA_67K signal pept 24.6 2.3E+02 0.005 26.0 6.2 89 25-114 76-181 (584)
367 PRK06052 5-methyltetrahydropte 24.6 82 0.0018 27.5 3.2 32 22-54 285-316 (344)
368 COG0021 TktA Transketolase [Ca 24.1 1.6E+02 0.0035 28.0 5.2 93 27-120 161-289 (663)
369 TIGR02529 EutJ ethanolamine ut 24.1 67 0.0014 25.6 2.4 50 21-72 173-223 (239)
370 TIGR00466 kdsB 3-deoxy-D-manno 23.8 1.9E+02 0.0041 22.8 4.9 25 77-101 103-129 (238)
371 PRK00129 upp uracil phosphorib 23.5 1.8E+02 0.004 22.7 4.8 39 32-73 141-181 (209)
372 PRK13111 trpA tryptophan synth 23.4 4.1E+02 0.009 21.7 7.0 58 57-114 131-203 (258)
373 TIGR01371 met_syn_B12ind 5-met 23.3 1.1E+02 0.0025 28.9 4.1 44 21-65 692-738 (750)
374 TIGR02154 PhoB phosphate regul 23.3 1.5E+02 0.0032 21.3 4.0 13 29-41 13-25 (226)
375 COG0244 RplJ Ribosomal protein 23.3 2E+02 0.0043 22.3 4.8 46 25-73 6-56 (175)
376 PRK15427 colanic acid biosynth 23.3 4.6E+02 0.01 22.2 8.2 84 27-113 237-330 (406)
377 KOG1226|consensus 23.2 87 0.0019 30.3 3.2 63 17-86 301-366 (783)
378 cd01020 TroA_b Metal binding p 23.2 2E+02 0.0044 23.0 5.1 50 23-74 188-238 (264)
379 TIGR03551 F420_cofH 7,8-dideme 23.0 2.1E+02 0.0045 24.0 5.3 26 25-52 70-95 (343)
380 PRK14724 DNA topoisomerase III 23.0 1.2E+02 0.0027 29.7 4.3 40 25-65 82-125 (987)
381 PF04123 DUF373: Domain of unk 22.8 1.3E+02 0.0027 26.2 4.0 43 26-69 82-127 (344)
382 TIGR01921 DAP-DH diaminopimela 22.8 4E+02 0.0086 22.9 6.9 77 43-120 60-149 (324)
383 PRK08173 DNA topoisomerase III 22.7 1.2E+02 0.0026 29.3 4.1 38 27-65 81-122 (862)
384 cd06385 PBP1_NPR_A Ligand-bind 22.7 3.5E+02 0.0075 22.4 6.5 70 22-93 122-208 (405)
385 PF03096 Ndr: Ndr family; Int 22.6 62 0.0014 27.4 2.0 30 18-48 73-102 (283)
386 TIGR00615 recR recombination p 22.5 2.2E+02 0.0047 22.9 5.0 50 38-88 130-190 (195)
387 cd01968 Nitrogenase_NifE_I Nit 22.5 1.4E+02 0.0031 25.5 4.2 76 45-120 159-241 (410)
388 cd04962 GT1_like_5 This family 22.4 3.9E+02 0.0085 21.0 7.9 84 26-113 211-296 (371)
389 cd08975 BaFpgNei_N_3 Uncharact 22.4 1.3E+02 0.0028 21.7 3.4 47 23-70 2-54 (117)
390 cd03209 GST_C_Mu GST_C family, 22.4 79 0.0017 21.8 2.3 13 28-40 7-19 (121)
391 cd08976 BaFpgNei_N_4 Uncharact 22.3 1.5E+02 0.0032 20.9 3.7 45 24-69 3-49 (117)
392 cd06381 PBP1_iGluR_delta_like 22.2 1.7E+02 0.0036 24.7 4.5 46 25-72 121-169 (363)
393 PF00465 Fe-ADH: Iron-containi 22.2 1.2E+02 0.0026 25.4 3.7 78 31-111 11-102 (366)
394 PRK01066 porphobilinogen deami 22.0 1.5E+02 0.0033 24.5 4.1 51 43-93 47-120 (231)
395 PF03193 DUF258: Protein of un 22.0 2.5E+02 0.0053 21.7 5.1 34 32-66 2-35 (161)
396 PRK10703 DNA-binding transcrip 21.9 4.1E+02 0.0089 21.1 8.8 61 57-117 78-145 (341)
397 PF11735 CAP59_mtransfer: Cryp 21.9 1.5E+02 0.0032 24.4 4.1 36 33-69 22-64 (241)
398 cd01018 ZntC Metal binding pro 21.8 2.7E+02 0.0059 22.2 5.6 46 24-74 200-246 (266)
399 PF11404 Potassium_chann: Pota 21.8 32 0.00069 20.0 0.1 7 94-100 5-11 (31)
400 COG1978 Uncharacterized protei 21.7 1.2E+02 0.0026 23.6 3.2 30 26-55 10-39 (152)
401 TIGR03599 YloV DAK2 domain fus 21.7 1.8E+02 0.0039 26.6 4.9 44 24-72 346-391 (530)
402 PRK10677 modA molybdate transp 21.7 1.5E+02 0.0033 23.7 4.1 50 47-96 31-84 (257)
403 TIGR01861 ANFD nitrogenase iro 21.6 1.4E+02 0.003 27.1 4.1 76 45-120 203-285 (513)
404 cd01027 TOPRIM_RNase_M5_like T 21.5 1.8E+02 0.0039 19.6 3.8 21 44-64 45-65 (81)
405 smart00481 POLIIIAc DNA polyme 21.5 2.2E+02 0.0047 17.7 5.3 35 37-72 23-58 (67)
406 PF14528 LAGLIDADG_3: LAGLIDAD 21.4 70 0.0015 20.5 1.7 24 46-69 23-46 (77)
407 cd02971 PRX_family Peroxiredox 21.4 1.8E+02 0.0039 19.9 3.9 47 22-73 37-86 (140)
408 cd07372 2A5CPDO_B The beta sub 21.3 1.6E+02 0.0034 24.7 4.2 32 25-57 160-195 (294)
409 cd06344 PBP1_ABC_ligand_bindin 21.3 4.3E+02 0.0092 21.1 8.1 87 23-109 113-214 (332)
410 PRK10949 protease 4; Provision 21.3 3.1E+02 0.0067 25.6 6.4 93 25-118 95-204 (618)
411 PRK15138 aldehyde reductase; P 21.2 3.3E+02 0.0072 23.3 6.2 63 29-96 17-94 (387)
412 PF10264 Stork_head: Winged he 21.2 1.3E+02 0.0029 20.9 3.1 29 16-48 40-68 (80)
413 PRK13435 response regulator; P 21.2 2.3E+02 0.0051 19.4 4.5 26 46-71 7-32 (145)
414 TIGR03405 Phn_Fe-ADH phosphona 21.1 4.8E+02 0.01 21.9 7.1 54 45-98 24-91 (355)
415 cd02169 Citrate_lyase_ligase C 21.1 4E+02 0.0087 22.3 6.6 24 29-53 45-68 (297)
416 COG1411 Uncharacterized protei 21.0 1.3E+02 0.0029 24.9 3.5 51 10-65 20-79 (229)
417 cd01017 AdcA Metal binding pro 21.0 2.6E+02 0.0056 22.5 5.3 47 23-74 202-249 (282)
418 TIGR02801 tolR TolR protein. T 21.0 3.1E+02 0.0068 19.4 5.4 44 26-70 76-122 (129)
419 PF14053 DUF4248: Domain of un 20.9 1E+02 0.0022 20.7 2.4 40 14-71 10-49 (69)
420 PF04430 DUF498: Protein of un 20.8 2E+02 0.0044 20.1 4.1 43 32-74 42-86 (110)
421 PRK02910 light-independent pro 20.8 4.3E+02 0.0094 23.7 7.1 30 43-73 292-322 (519)
422 KOG0202|consensus 20.8 3.8E+02 0.0082 26.7 6.9 112 7-120 505-662 (972)
423 cd03801 GT1_YqgM_like This fam 20.8 3.6E+02 0.0079 20.0 7.0 85 26-113 213-301 (374)
424 PRK13030 2-oxoacid ferredoxin 20.8 2E+02 0.0043 29.1 5.2 42 31-73 540-599 (1159)
425 PRK11509 hydrogenase-1 operon 20.7 2.2E+02 0.0048 21.3 4.5 49 23-74 18-75 (132)
426 PRK05450 3-deoxy-manno-octulos 20.7 2.7E+02 0.0059 21.3 5.2 40 29-73 28-67 (245)
427 COG1856 Uncharacterized homolo 20.6 2.9E+02 0.0062 23.5 5.5 51 24-76 201-253 (275)
428 PRK11557 putative DNA-binding 20.5 2.7E+02 0.006 22.0 5.3 70 34-103 118-191 (278)
429 CHL00073 chlN photochlorophyll 20.5 3.6E+02 0.0079 24.2 6.5 20 75-94 378-398 (457)
430 PRK06136 uroporphyrin-III C-me 20.5 2.9E+02 0.0063 21.5 5.4 47 27-75 66-115 (249)
431 PRK15484 lipopolysaccharide 1, 20.4 5E+02 0.011 21.5 7.3 85 27-113 208-303 (380)
432 PF06598 Chlorovi_GP_rpt: Chlo 20.2 42 0.00092 19.9 0.4 6 90-95 1-6 (34)
433 COG0859 RfaF ADP-heptose:LPS h 20.2 3.3E+02 0.0072 22.5 5.9 13 83-95 247-259 (334)
434 cd00405 PRAI Phosphoribosylant 20.2 2.6E+02 0.0056 21.3 4.9 7 86-92 119-125 (203)
435 PF12804 NTP_transf_3: MobA-li 20.2 3.2E+02 0.007 19.2 5.5 40 30-74 26-65 (160)
436 PF13676 TIR_2: TIR domain; PD 20.2 1.1E+02 0.0024 20.3 2.5 35 30-66 12-49 (102)
437 PF10116 Host_attach: Protein 20.1 1.9E+02 0.0041 20.9 4.0 37 28-66 76-112 (138)
438 PRK00072 hemC porphobilinogen 20.1 1.5E+02 0.0033 25.2 3.9 64 30-94 22-110 (295)
No 1
>KOG3849|consensus
Probab=100.00 E-value=7.8e-52 Score=344.61 Aligned_cols=127 Identities=46% Similarity=0.736 Sum_probs=124.2
Q ss_pred ccCCcccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHH
Q psy9357 3 TNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVD 81 (132)
Q Consensus 3 ~~spqC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vD 81 (132)
||||||+||.++.+.+|+++|.||+++|++||+++++.++++++||||||++||++||+++|++++++|+++ ||++++|
T Consensus 259 fASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs~hmi~Eln~aL~~~~i~vh~l~pdd~y~d 338 (386)
T KOG3849|consen 259 FASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDSDHMIDELNEALKPYEIEVHRLEPDDMYTD 338 (386)
T ss_pred ccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccchhhhHHHHHhhcccceeEEecCcccchhh
Confidence 899999999999999999999999999999999999999679999999999999999999999999999999 8999999
Q ss_pred HHHHhhcCeeeecceeecchhhhhhhhcCCCCCCcccCCCCccccccccCC
Q psy9357 82 LAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPIKKTAQKVKDEL 132 (132)
Q Consensus 82 l~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps~F~g~~~~~~~~~~~~el 132 (132)
|+|+|||||||||||||||+|||||||..|+||.|||++.+. +.|+||
T Consensus 339 LaIlGqadhFiGNCvSsfsafvKRERD~~GrPS~FfG~dr~~---k~h~el 386 (386)
T KOG3849|consen 339 LAILGQADHFIGNCVSSFSAFVKRERDHAGRPSAFFGIDRPV---KRHIEL 386 (386)
T ss_pred hhhhcccchhhhhhHHHHHHHHhhhhcccCCcchhcccCCCc---cccccC
Confidence 999999999999999999999999999999999999999988 899997
No 2
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.87 E-value=1.1e-22 Score=166.27 Aligned_cols=111 Identities=28% Similarity=0.483 Sum_probs=76.9
Q ss_pred CccCCcccccccCCc-cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhcc----CCcEEE
Q psy9357 2 ETNAPQCLGYRNEYG-VATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKR----TEIRIV 72 (132)
Q Consensus 2 ~~~spqC~g~~~e~~-~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~----~~~~vv 72 (132)
.|+++||.+....+. ..+..+|+|+.++++.+|++++... +.+.||||||.. ..++.|++.|+. ..+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~-~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 298 (351)
T PF10250_consen 220 LLASPRCWGKKSINPEKKRRNGCCPSTPQEAKQILRALGKN-NTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSH 298 (351)
T ss_dssp -TTTHHHH-GGGTT-----HHHHS--HHHHHHHHHHHHHHH-T-SEEEEEESS-----------HHHHHHHHGGGT--EE
T ss_pred HHHHhHhhccccccchhhhhcCCCCChHHHHHHHHHHhccC-CCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCH
Confidence 589999998744443 7888999999999999999999998 999999999983 245666666653 222222
Q ss_pred e-C-----CCchHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC
Q psy9357 73 P-S-----DQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 73 ~-l-----~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
. + ...++||++||++|++|||||.||||++|.++|..+|+|
T Consensus 299 ~~~~~~~~~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 299 EELEPLNDDQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp --S-----S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred HHhhhccccchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence 2 2 228999999999999999999999999999999999987
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=97.17 E-value=0.00053 Score=58.52 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=41.8
Q ss_pred CcEEEEecCCcccHHHHHHhhccCCcEEEe---------C--CC-------chHHHHHHHhhcCeeee-cceeecchhhh
Q psy9357 44 IKYIFVATDNNNLNEPLKEAFKRTEIRIVP---------S--DQ-------SPHVDLAILSQANHFIG-NCISSFTAFVK 104 (132)
Q Consensus 44 lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~---------l--~~-------~~~vDl~Il~~A~~FIG-NcvSSFTa~V~ 104 (132)
-..||||||+..-++++++.|+.. +.+.+ | ++ .+-|||++|++.||.|- .--|+||.-..
T Consensus 214 ~~~IFLATDSaeVid~fr~~FPdi-iti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~as 292 (321)
T PF05830_consen 214 PVRIFLATDSAEVIDQFRKKFPDI-ITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYAS 292 (321)
T ss_dssp -EEEEEEES-HHHHHHHHHHSTTE-E----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHH
T ss_pred CeeEEEecCcHHHHHHHHHHCCCe-EEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHH
Confidence 356999999999999999999741 12211 1 11 67899999999999994 77777875443
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=95.95 E-value=0.054 Score=44.70 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=56.2
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccC-CcEEEeCCCchHHHHHHHhhcCeeeecceeecch
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRT-EIRIVPSDQSPHVDLAILSQANHFIGNCISSFTA 101 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~-~~~vv~l~~~~~vDl~Il~~A~~FIGNcvSSFTa 101 (132)
-..+.+=..+.|....++. +--.+||-||..+|..+. |... +..++..+..+..||+++++++|+|+.- ||||-
T Consensus 186 ~~~~~~Yy~~Ai~~i~~~~-~~~~f~ifSDD~~w~k~~---l~~~~~~~~~~~~~~~~~Dl~lms~C~~~Iisn-STFsw 260 (298)
T PF01531_consen 186 GICDKDYYKKAIEYIREKV-KNPKFFIFSDDIEWCKEN---LKFSNGDVYFSGNNSPYEDLYLMSQCKHFIISN-STFSW 260 (298)
T ss_pred CCCCHHHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHH---HhhcCCcEEEECCCCHHHHHHHHHhCCcEEECC-ChHHH
Confidence 4556666667777776666 556788899988787642 3221 2223333568999999999999999995 99997
Q ss_pred hhhhhh
Q psy9357 102 FVKRHR 107 (132)
Q Consensus 102 ~V~reR 107 (132)
-..-.-
T Consensus 261 W~a~L~ 266 (298)
T PF01531_consen 261 WAAYLS 266 (298)
T ss_pred HHHHHC
Confidence 766554
No 5
>PRK07561 DNA topoisomerase I subunit omega; Validated
Probab=94.41 E-value=0.09 Score=49.75 Aligned_cols=94 Identities=22% Similarity=0.422 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccC--CcEEEeC-----------------CCchHH
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRT--EIRIVPS-----------------DQSPHV 80 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~--~~~vv~l-----------------~~~~~v 80 (132)
.|+.+.+++.|+++++ ++..||+|||.+.+ .-+|.+.|... .++.+.+ .+..-+
T Consensus 70 ~~~k~~~~~~lk~~~k---~ad~iilAtD~DREGE~I~~~i~~~l~~~~~~v~Ri~f~~iT~~aI~~A~~n~~~~~~~l~ 146 (859)
T PRK07561 70 LPGKEKVVSELKKAAK---DADELYLATDPDREGEAIAWHLLEVLGGDDVPVKRVVFNEITKNAIQEAFENPRELDINLV 146 (859)
T ss_pred CccHHHHHHHHHHHHh---cCCEEEECCCCCccchHHHHHHHHHhCCCCCCeEEEEEccCCHHHHHHHHhCcccCCHHHH
Confidence 4778889999999886 56899999999873 33466666522 2333321 113444
Q ss_pred HHHHHhhc-Ceeeecceee---------cch----------hhhhhhhcCCC-CCCcccCC
Q psy9357 81 DLAILSQA-NHFIGNCISS---------FTA----------FVKRHRDVKGL-PSSFWAFP 120 (132)
Q Consensus 81 Dl~Il~~A-~~FIGNcvSS---------FTa----------~V~reR~~~G~-ps~F~g~~ 120 (132)
|-..++|. |..||=-+|- +|+ -|.|||++..| |..||.+.
T Consensus 147 ~A~~aRr~lD~lvG~~lS~~l~~~~~~~lSaGRVQsp~L~lIv~Re~eI~~F~p~~yw~i~ 207 (859)
T PRK07561 147 NAQQARRFLDRLVGYMVSPLLWKKIARGLSAGRVQSVAVRLIVEREREIEAFVPEEYWDIH 207 (859)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHhhccCCCcccchhhhhHHHHHHHHHHHhcCCCccEEEE
Confidence 55555554 7777776663 222 34899999997 78999874
No 6
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=90.49 E-value=0.44 Score=42.91 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=51.3
Q ss_pred CCcEEEEecCCcccHHHHHHhhccC----C--cEEEeC--------CC-----chHHHHHHHhhcCeeeecceeecchhh
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRT----E--IRIVPS--------DQ-----SPHVDLAILSQANHFIGNCISSFTAFV 103 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~----~--~~vv~l--------~~-----~~~vDl~Il~~A~~FIGNcvSSFTa~V 103 (132)
+.++|+|++....+-++|+...-+. | |.|+.. .+ .|-+|||+|+-+|+.|=+.+|||-.-.
T Consensus 353 ~~kaVlVtSL~~~yye~lr~~Y~~~~t~tGe~V~V~QpShe~~Q~~~~~~h~~kAlaEmyLLS~sD~LVTS~~STFGYVA 432 (476)
T PF03254_consen 353 KSKAVLVTSLYSEYYEKLRNMYWEHPTVTGEVVGVHQPSHEEYQQFGDNMHNQKALAEMYLLSLSDVLVTSGWSTFGYVA 432 (476)
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhcCCCcCCcEEEEECCCCcccccccccchHHHHHHHHHHHHhccceEecCCCCchhHH
Confidence 7789999999999999999988643 2 344431 11 688999999999999999999999877
Q ss_pred hhh
Q psy9357 104 KRH 106 (132)
Q Consensus 104 ~re 106 (132)
+=.
T Consensus 433 qgL 435 (476)
T PF03254_consen 433 QGL 435 (476)
T ss_pred Hhh
Confidence 543
No 7
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=89.90 E-value=1.3 Score=37.90 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN 94 (132)
..++++...++++ +.++++|-||.. .+++++++.|++.++.++.+ |. ...++++--.++|..||=
T Consensus 17 g~~~~l~~~~~~~-g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iiai 95 (383)
T PRK09860 17 DSLTDAMNMMADY-GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISL 95 (383)
T ss_pred CHHHHHHHHHHhc-CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4667788888888 899999999863 37899999999877765543 22 345555557789999976
Q ss_pred ce
Q psy9357 95 CI 96 (132)
Q Consensus 95 cv 96 (132)
|-
T Consensus 96 GG 97 (383)
T PRK09860 96 GG 97 (383)
T ss_pred CC
Confidence 65
No 8
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=88.49 E-value=2 Score=37.09 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhCCCcEE-EE-ecCC--c-ccHHHHHHhhccCCcEEEeC-----CCchHHHHHHHhhcCeeeecc---
Q psy9357 29 TVVRQLKRVVREHGQIKYI-FV-ATDN--N-NLNEPLKEAFKRTEIRIVPS-----DQSPHVDLAILSQANHFIGNC--- 95 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~V-fI-aTD~--~-~~~~eLk~~l~~~~~~vv~l-----~~~~~vDl~Il~~A~~FIGNc--- 95 (132)
.+.+++...-+-.+++|+| ++ .++. + ..++||++.++..|++|+.. .|.+..=..+.++.|++.+.+
T Consensus 144 ~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~ 223 (322)
T COG2984 144 PVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL 223 (322)
T ss_pred hHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH
Confidence 3445554444444689998 33 4432 2 37999999999999999986 458888888889999999966
Q ss_pred -eeecchhhhhhhh
Q psy9357 96 -ISSFTAFVKRHRD 108 (132)
Q Consensus 96 -vSSFTa~V~reR~ 108 (132)
+|.+++.++.-+.
T Consensus 224 i~s~~~~l~~~a~~ 237 (322)
T COG2984 224 IVSAIESLLQVANK 237 (322)
T ss_pred HHHHHHHHHHHHHH
Confidence 6778887765543
No 9
>KOG3705|consensus
Probab=88.03 E-value=0.25 Score=44.40 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHHh-----CCCcEEEEecCCcccHHHHHHhhccCCcEEEe---------C----CC----chHHH
Q psy9357 24 FPSVETVVRQLKRVVREH-----GQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP---------S----DQ----SPHVD 81 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~-----~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~---------l----~~----~~~vD 81 (132)
+-++++-..-+..+-+-+ +..|.||+|||-+.-++|-|...+.+ +|+. + .| .-++|
T Consensus 381 fH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~kYPnY--e~igd~eia~~A~l~nRYTd~sL~GvIlD 458 (580)
T KOG3705|consen 381 FHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKNKYPNY--EVIGDTEIAKTAQLNNRYTDASLMGVILD 458 (580)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhccCCCc--EEeccHHHHHHhhccccchhhhhhheeee
Confidence 344555555555444433 36799999999999999988877653 3331 2 22 67899
Q ss_pred HHHHhhcCeeeecceeecchhh----hhhhhcCC
Q psy9357 82 LAILSQANHFIGNCISSFTAFV----KRHRDVKG 111 (132)
Q Consensus 82 l~Il~~A~~FIGNcvSSFTa~V----~reR~~~G 111 (132)
..||+++||.+. |||+.| ++.+.-.|
T Consensus 459 Ih~LS~~d~LVC----TFSSQVCRvaYEimQt~~ 488 (580)
T KOG3705|consen 459 IHILSKVDYLVC----TFSSQVCRVAYEIMQTSG 488 (580)
T ss_pred eeeecccceEEE----echHHHHHHHHHHHhccC
Confidence 999999999975 577766 44555555
No 10
>PRK08780 DNA topoisomerase I; Provisional
Probab=87.69 E-value=1.6 Score=41.24 Aligned_cols=94 Identities=18% Similarity=0.332 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhcc------CCcEEEe------------C--C---C
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKR------TEIRIVP------------S--D---Q 76 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~------~~~~vv~------------l--~---~ 76 (132)
.|+...+++.|+..++ ++..||+|||++.+ --+|-+.|.. ..++.+. + + +
T Consensus 57 ~~~k~~~~~~lk~~~k---~ad~vilAtD~DREGE~Ia~~i~~~l~~~~~~~~~~v~Ri~f~eiT~~aI~~A~~n~r~~d 133 (780)
T PRK08780 57 IDKNEKHVEAIAKAAK---SADDLYLATDPDREGEAISWHLAEILKERGLLKDKPMQRVVFTEITPRAIKEAMAKPRDIA 133 (780)
T ss_pred cCchHHHHHHHHHHHH---hCCEEEECCCCCcccHHHHHHHHHHhcccccCCCCceEEEEEccCCHHHHHHHHhCCCcCc
Confidence 4666778888888886 56899999999873 2235555631 1232222 1 1 1
Q ss_pred chHHHHHHHhh-cCeeeeccee---------ec----------chhhhhhhhcCCC-CCCcccCC
Q psy9357 77 SPHVDLAILSQ-ANHFIGNCIS---------SF----------TAFVKRHRDVKGL-PSSFWAFP 120 (132)
Q Consensus 77 ~~~vDl~Il~~-A~~FIGNcvS---------SF----------Ta~V~reR~~~G~-ps~F~g~~ 120 (132)
..-+|-..++| +|..||=-+| .+ .--|.|||++..| |..||.+.
T Consensus 134 ~~l~~A~~aRr~lD~lvG~~lSr~l~~~~~~~lSaGRVQspaL~lIveRE~eI~~F~p~~yw~i~ 198 (780)
T PRK08780 134 SDLVDAQQARRALDYLVGFNLSPLLWRKIQRGLSAGRVQSPALRMIVEREEEIEAFIAREYWSIE 198 (780)
T ss_pred HhHHHHHHHHHHHHHhcCeeecHHHHHhhCCCCcccccHHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 22233333332 3566776655 12 2245899999997 78999763
No 11
>PRK07283 hypothetical protein; Provisional
Probab=85.90 E-value=3.1 Score=29.34 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeeeecceeecc
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFT 100 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FIGNcvSSFT 100 (132)
+++.+.+++- +++-||+|+|+++ ..+.+...-...++.++...+...+.+++.. ....||=.-.-|+
T Consensus 24 ~~v~~aik~g-k~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk-~~~vvai~d~g~a 91 (98)
T PRK07283 24 ELVVKAIQSG-QAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELSAAVGK-PRKVLAVTDAGFS 91 (98)
T ss_pred HHHHHHHHcC-CccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC-CceEEEEeChhHH
Confidence 4566666665 8999999999886 4666767655567888776666777777775 3555554433343
No 12
>PRK06599 DNA topoisomerase I; Validated
Probab=85.53 E-value=1.7 Score=40.14 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=29.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhh
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAF 64 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l 64 (132)
..|+.+.+++.|+.+++ ++..|+||||++.+ ..++-+++
T Consensus 56 ~~~~~~~~~~~ik~l~~---~~d~iiiAtD~DrEGE~I~~~i~~~~ 98 (675)
T PRK06599 56 IIEGKEKVVDALKKAAK---KADAVYLATDPDREGEAIAWHIAEVL 98 (675)
T ss_pred ECCcHHHHHHHHHHHHh---hCCEEEECCCCCcchHHHHHHHHHHH
Confidence 45777888888888886 56899999999873 33466666
No 13
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=85.18 E-value=8.7 Score=31.76 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=66.8
Q ss_pred ccCCCHHHHHHHHHHHHHHhC----CCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHH
Q psy9357 22 LCFPSVETVVRQLKRVVREHG----QIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAIL 85 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~----~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il 85 (132)
+..|+.......+-+++.+.. +.++|+|..+++. ..+.++++|++.|++++.. .| .++|..+-.
T Consensus 114 r~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~ 193 (351)
T cd06334 114 PVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRR 193 (351)
T ss_pred eCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHH
Confidence 445777777777777776652 3899999985554 4677888888889988753 23 788999999
Q ss_pred hhcCeeeecceeecchhhhhhhhcCCCCCCccc
Q psy9357 86 SQANHFIGNCISSFTAFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 86 ~~A~~FIGNcvSSFTa~V~reR~~~G~ps~F~g 118 (132)
+.+|..+-......+..+.++=...|++..|.+
T Consensus 194 ~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~~~~ 226 (351)
T cd06334 194 SGPDYVILWGWGVMNPVAIKEAKRVGLDDKFIG 226 (351)
T ss_pred cCCCEEEEecccchHHHHHHHHHHcCCCceEEE
Confidence 999998766666555544443333466544443
No 14
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=84.86 E-value=2.4 Score=30.74 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEec---CCc-----ccHHHHHHhhccC-CcEEEe
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVAT---DNN-----NLNEPLKEAFKRT-EIRIVP 73 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaT---D~~-----~~~~eLk~~l~~~-~~~vv~ 73 (132)
-+.++.+++.+. +. ++..|+++| +.+ +++++|++.+++. |++||.
T Consensus 51 g~~~~~~~~~l~-~~-~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLK-KN-GADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred hhHHHHHHHHHH-HC-CCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 678888888887 44 899999999 433 5899999999876 888873
No 15
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=84.52 E-value=4.1 Score=34.38 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CCc----hHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQS----PHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~~----~~vDl~Il~~A~~FIGN 94 (132)
..++++.+.++++ +.++++|-||.. .+.+++++.|+..++++..+ |.. ..++++=-.++|..||=
T Consensus 10 g~~~~l~~~l~~~-g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIai 88 (370)
T cd08192 10 GAIKELPAECAEL-GIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAF 88 (370)
T ss_pred CHHHHHHHHHHHc-CCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3567787888887 889999999854 26899999998767655432 333 34444446778999877
Q ss_pred ceeec
Q psy9357 95 CISSF 99 (132)
Q Consensus 95 cvSSF 99 (132)
|--|-
T Consensus 89 GGGSv 93 (370)
T cd08192 89 GGGSA 93 (370)
T ss_pred CCchH
Confidence 65443
No 16
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=84.00 E-value=4.5 Score=34.27 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN 94 (132)
..++++...++++ +.++++|-||.. .++++++..|++.++++..+ |. ...++++--.++|..||=
T Consensus 12 g~l~~l~~~l~~~-~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 90 (376)
T cd08193 12 GSLARLGELLAAL-GAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGF 90 (376)
T ss_pred CHHHHHHHHHHHc-CCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567777888887 889999999864 26899999998777655432 33 345555556788999887
Q ss_pred ceeecc
Q psy9357 95 CISSFT 100 (132)
Q Consensus 95 cvSSFT 100 (132)
|-=|--
T Consensus 91 GGGs~i 96 (376)
T cd08193 91 GGGSSM 96 (376)
T ss_pred CCchHH
Confidence 655543
No 17
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=83.75 E-value=4.1 Score=34.55 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG 93 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG 93 (132)
..++++.+.+++. + ++++|-||... .++++++.|++.++++..+ |. ...++++--.++|..||
T Consensus 12 g~l~~l~~~~~~~-g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 89 (380)
T cd08185 12 GKLNELGEEALKP-G-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVG 89 (380)
T ss_pred CHHHHHHHHHHhc-C-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4566777777776 6 89999998643 6789999998877665543 23 34445555668999997
Q ss_pred cceeecc
Q psy9357 94 NCISSFT 100 (132)
Q Consensus 94 NcvSSFT 100 (132)
=|--|--
T Consensus 90 vGGGS~i 96 (380)
T cd08185 90 LGGGSSM 96 (380)
T ss_pred eCCccHH
Confidence 7664443
No 18
>PRK06683 hypothetical protein; Provisional
Probab=83.72 E-value=3.3 Score=28.55 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEeCC
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVPSD 75 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~l~ 75 (132)
+++.+.+++. +++-||||.|.++. .+.+..+=+..++.++..+
T Consensus 17 ~~v~kaik~g-kaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 17 KRTLEAIKNG-IVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHHHHcC-CeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 3444555554 89999999998875 5555555556678777654
No 19
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=82.72 E-value=8.3 Score=30.84 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=66.5
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc---EEE--eC-C--C-chHHHHHHHhhcCee
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI---RIV--PS-D--Q-SPHVDLAILSQANHF 91 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~---~vv--~l-~--~-~~~vDl~Il~~A~~F 91 (132)
-.+.|+.....+.+-++++.. +.++|+|..|.+.+...|+++|++.+. .|+ .. + | .+++..+-...+|.+
T Consensus 107 fr~~p~~~~~~~a~~~~~~~~-~w~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~d~v 185 (327)
T cd06382 107 INLYPSNADLSRAYADIVKSF-NWKSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSGDNRI 185 (327)
T ss_pred EEeCCCHHHHHHHHHHHHHhc-CCcEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhcCceEE
Confidence 456788888888888888887 899999999888898999999986553 232 23 2 2 667777777788888
Q ss_pred eecceeecchhhhhhhhcCCCCCC
Q psy9357 92 IGNCISSFTAFVKRHRDVKGLPSS 115 (132)
Q Consensus 92 IGNcvSSFTa~V~reR~~~G~ps~ 115 (132)
|-.|...=...+-++=...|+...
T Consensus 186 v~~~~~~~~~~~~~qa~~~g~~~~ 209 (327)
T cd06382 186 IIDCSADILIELLKQAQQVGMMSE 209 (327)
T ss_pred EEECCHHHHHHHHHHHHHhCcccc
Confidence 877765555555444344565443
No 20
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=82.67 E-value=6.4 Score=33.21 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG 93 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG 93 (132)
..++++.+.+++. + ++++|-||... +++++++.|+..++++..+ |. ...+|++--..+|..||
T Consensus 12 g~l~~l~~~~~~~-g-~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 89 (357)
T cd08181 12 NCVEKHGEELAAL-G-KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIG 89 (357)
T ss_pred CHHHHHHHHHHHc-C-CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 3566777777777 6 89999998653 5689999998777655432 32 35566666778899998
Q ss_pred cceeecchhh
Q psy9357 94 NCISSFTAFV 103 (132)
Q Consensus 94 NcvSSFTa~V 103 (132)
=|-=|--.-.
T Consensus 90 vGGGSviD~a 99 (357)
T cd08181 90 IGGGSPLDAA 99 (357)
T ss_pred eCCchHHHHH
Confidence 7655544333
No 21
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=82.34 E-value=7.4 Score=31.91 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHHhCC-CcEEEEecCCcccHH-------HHHHhhccCCcEEEe---C----CC-chHHHHHHHhh
Q psy9357 24 FPSVETVVRQLKRVVREHGQ-IKYIFVATDNNNLNE-------PLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQ 87 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~-lk~VfIaTD~~~~~~-------eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~ 87 (132)
.++..++.+.+-..++.. + .++|++..+++.|=. ++.++|++.|++++. + .| .++|..+.-+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~-~~~k~v~ii~~~~~~g~~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~ 203 (357)
T cd06337 125 FWGAEDVVATYVGMWKQL-ETNKKVGILYPNDPDGNAFADPVIGLPAALADAGYKLVDPGRFEPGTDDFSSQINAFKREG 203 (357)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCceEEEEeecCchhHHHHHhhhcccHHHHhCCcEEecccccCCCCCcHHHHHHHHHhcC
Confidence 345556666766666665 6 899999986665432 233556667888874 2 23 78999999999
Q ss_pred cCeeeecceeecchh-hhhhhhcCCCC
Q psy9357 88 ANHFIGNCISSFTAF-VKRHRDVKGLP 113 (132)
Q Consensus 88 A~~FIGNcvSSFTa~-V~reR~~~G~p 113 (132)
+|..++.+.....+. ++..|+ .|+.
T Consensus 204 pD~v~~~~~~~~~~~~~~~~~~-~G~~ 229 (357)
T cd06337 204 VDIVTGFAIPPDFATFWRQAAQ-AGFK 229 (357)
T ss_pred CCEEEeCCCccHHHHHHHHHHH-CCCC
Confidence 999998877765554 444455 3543
No 22
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=82.30 E-value=5.3 Score=34.03 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN 94 (132)
..+++|...++++ +.++++|-||.. .+.+++++.|++.++++..+ |. ...++++--.++|..||=
T Consensus 16 g~l~~l~~~~~~~-g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 94 (382)
T PRK10624 16 GAIGALTDEVKRR-GFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAI 94 (382)
T ss_pred CHHHHHHHHHHhc-CCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4677888888888 889999999864 27889999998777655433 32 234455556689999876
Q ss_pred ce
Q psy9357 95 CI 96 (132)
Q Consensus 95 cv 96 (132)
|-
T Consensus 95 GG 96 (382)
T PRK10624 95 GG 96 (382)
T ss_pred CC
Confidence 55
No 23
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=81.95 E-value=9.7 Score=28.80 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
.-|...|+++.+.- .+..|+||||..+..+. +++.|+.|+.
T Consensus 25 pLi~~~i~~a~~s~-~~d~IvVaTd~~~i~~~----~~~~g~~v~~ 65 (217)
T PF02348_consen 25 PLIEYVIERAKQSK-LIDEIVVATDDEEIDDI----AEEYGAKVIF 65 (217)
T ss_dssp EHHHHHHHHHHHTT-TTSEEEEEESSHHHHHH----HHHTTSEEEE
T ss_pred cHHHHHHHHHHhCC-CCCeEEEeCCCHHHHHH----HHHcCCeeEE
Confidence 34555566655554 78999999999654443 3334444444
No 24
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=81.78 E-value=5.6 Score=34.80 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC----CC------chHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS----DQ------SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l----~~------~~~vDl~Il~~A~~FIGN 94 (132)
..++.+.+.++.+ +.++++|-||.. .+++++.+.|+..++++... |+ ...+..+--.+.|..||=
T Consensus 15 g~l~~l~~~~~~~-g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIal 93 (377)
T COG1454 15 GSLKELGEEVKRL-GAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIAL 93 (377)
T ss_pred ChHHHHHHHHHhc-CCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3567788888888 999999999975 48999999999888654443 32 455566667788999886
Q ss_pred ceeec
Q psy9357 95 CISSF 99 (132)
Q Consensus 95 cvSSF 99 (132)
|-=|-
T Consensus 94 GGGS~ 98 (377)
T COG1454 94 GGGSV 98 (377)
T ss_pred CCccH
Confidence 65443
No 25
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=81.09 E-value=9.2 Score=31.53 Aligned_cols=92 Identities=8% Similarity=0.111 Sum_probs=64.7
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCc----EEEe---C-CC----chHHHHHHH
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEI----RIVP---S-DQ----SPHVDLAIL 85 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~----~vv~---l-~~----~~~vDl~Il 85 (132)
+..|+.....+.+-+.++.+ +.++|.|..+.+. ..+.+++++++.|+ +++. + +. .+.+..+--
T Consensus 133 R~~psd~~~~~a~~~~l~~~-~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~ 211 (377)
T cd06379 133 RTVPPYSHQADVWLEMLRSF-KWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKE 211 (377)
T ss_pred EecCCHHHHHHHHHHHHHHc-CCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhh
Confidence 45577777777777788888 9999999997666 57888899988887 7664 3 22 455555556
Q ss_pred hhcCeeeecceeecchhhhhhhhcCCCCC
Q psy9357 86 SQANHFIGNCISSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 86 ~~A~~FIGNcvSSFTa~V~reR~~~G~ps 114 (132)
..+|++|.-|-..=...+-++=..+|+.+
T Consensus 212 ~~~~vIvl~~~~~~~~~l~~qa~~~g~~~ 240 (377)
T cd06379 212 LTSRVILLSASEDDAAVIYRNAGMLNMTG 240 (377)
T ss_pred cCCeEEEEEcCHHHHHHHHHHHHHcCCCC
Confidence 78999998776665555544434445543
No 26
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=81.03 E-value=12 Score=30.50 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhcCee
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQANHF 91 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A~~F 91 (132)
-|+-....+.+-.++++. +.++|+|..+... ..+.++++|++.|++++.. .| .+++..+.-+.+|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~-~~~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v 197 (347)
T cd06336 119 PPIYNVYGVPFLAYAKKP-GGKKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVI 197 (347)
T ss_pred cCCchhHHHHHHHHHhhc-CCceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEE
Confidence 355555555566666655 7899999884444 4666778888888888742 23 788888888889988
Q ss_pred eecceee--cchhhhhhhhcCCCCCCcccC
Q psy9357 92 IGNCISS--FTAFVKRHRDVKGLPSSFWAF 119 (132)
Q Consensus 92 IGNcvSS--FTa~V~reR~~~G~ps~F~g~ 119 (132)
+-.+... ...+++..|. .|+...++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 226 (347)
T cd06336 198 FLGGPSPAPAALVIKQARE-LGFKGGFLSC 226 (347)
T ss_pred EEcCCCchHHHHHHHHHHH-cCCCccEEec
Confidence 7655544 4455555554 4654444443
No 27
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=80.84 E-value=6.4 Score=33.58 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC----CC------chHHHHHHHhhcCeeeecc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS----DQ------SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l----~~------~~~vDl~Il~~A~~FIGNc 95 (132)
.++++...++.+ + ++++|-||.. .+++++.+.|++.++++..+ ++ ...++++.-.++|..||=|
T Consensus 10 ~l~~l~~~~~~~-g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiG 87 (386)
T cd08191 10 QRRQLPRLAARL-G-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLG 87 (386)
T ss_pred HHHHHHHHHHHc-C-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 457777788887 7 8999999864 47889999998777665543 11 3445666667889998766
Q ss_pred eee
Q psy9357 96 ISS 98 (132)
Q Consensus 96 vSS 98 (132)
-=|
T Consensus 88 GGS 90 (386)
T cd08191 88 GGS 90 (386)
T ss_pred Cch
Confidence 544
No 28
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=80.82 E-value=24 Score=28.33 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=58.9
Q ss_pred ccccCCCHHHHHHHHHHHH-HHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHh
Q psy9357 20 EELCFPSVETVVRQLKRVV-REHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILS 86 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~-~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~ 86 (132)
.-.+-|+...-...+-+++ +.. +.++|+|..+... ..+.++++|++.|++++.. .| .+++..+...
T Consensus 111 ~f~~~~~~~~~~~~~~~~~~~~~-~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 111 IFRNSTSQAIEAPLLADYAVKDL-GFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred EEEccCCcHHHHHHHHHHHHHHc-CCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 3445666666666666664 555 7899999884444 4667778887778888741 22 6888888888
Q ss_pred hcCeeeecceee-cchhhhhhhh
Q psy9357 87 QANHFIGNCISS-FTAFVKRHRD 108 (132)
Q Consensus 87 ~A~~FIGNcvSS-FTa~V~reR~ 108 (132)
.+|++|..+... ...+++..++
T Consensus 190 ~~d~v~~~~~~~~~~~~~~~~~~ 212 (340)
T cd06349 190 NPDAIILISYYNDGAPIARQARA 212 (340)
T ss_pred CCCEEEEccccchHHHHHHHHHH
Confidence 899887666543 4445555554
No 29
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=80.57 E-value=7.1 Score=33.66 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=53.4
Q ss_pred ccCCC----HHHHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CCchHHHHH----
Q psy9357 22 LCFPS----VETVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQSPHVDLA---- 83 (132)
Q Consensus 22 ~C~Ps----~~~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~~~~vDl~---- 83 (132)
.+.|+ =...++++-..++++ +.+.++|-||.. .+++++.+.|++.+++++.+ |....|+-.
T Consensus 24 f~~P~~i~fG~g~~~~l~~~~~~~-g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~ 102 (395)
T PRK15454 24 FSVPPVTLCGPGAVSSCGQQAQTR-GLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL 102 (395)
T ss_pred eecCCeEEECcCHHHHHHHHHHhc-CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence 45565 246778888888888 899999999853 46899999999878765543 223334443
Q ss_pred HHhhcCeeeecceee
Q psy9357 84 ILSQANHFIGNCISS 98 (132)
Q Consensus 84 Il~~A~~FIGNcvSS 98 (132)
=-.++|..||=|--|
T Consensus 103 r~~~~D~IiavGGGS 117 (395)
T PRK15454 103 RESGCDGVIAFGGGS 117 (395)
T ss_pred HhcCcCEEEEeCChH
Confidence 357889998866544
No 30
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=80.43 E-value=3.9 Score=28.67 Aligned_cols=42 Identities=10% Similarity=0.190 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEeC
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~l 74 (132)
+|..+.+++. .++-||||-|.+++ +..|..+-++.++.++..
T Consensus 19 kqt~Kai~kg-~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V 61 (84)
T PRK13600 19 KETLKALKKD-QVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF 61 (84)
T ss_pred HHHHHHHhcC-CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3444555554 89999999998874 666666666667777765
No 31
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=80.42 E-value=7 Score=33.20 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CCch----HHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQSP----HVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~~~----~vDl~Il~~A~~FIGN 94 (132)
..++++...++++ +.++++|-||..- +.+++++.|+..++.+..+ |... .++++--.++|..||=
T Consensus 14 g~l~~l~~~l~~~-g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIai 92 (377)
T cd08188 14 GALKLAGRYARRL-GAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAV 92 (377)
T ss_pred CHHHHHHHHHHHc-CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567788888888 8899999998542 6889999998766655432 3333 3444446688999876
Q ss_pred cee
Q psy9357 95 CIS 97 (132)
Q Consensus 95 cvS 97 (132)
|-=
T Consensus 93 GGG 95 (377)
T cd08188 93 GGG 95 (377)
T ss_pred CCc
Confidence 543
No 32
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=80.39 E-value=6.8 Score=33.30 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CCc----hHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQS----PHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~~----~~vDl~Il~~A~~FIGN 94 (132)
..++++.+.++++ +.++++|-||..- +.+++++.|++.+++++.+ |.. ..++++--.++|..||=
T Consensus 15 g~l~~l~~~l~~~-g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iiai 93 (379)
T TIGR02638 15 GAIEDIVDEVKRR-GFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAI 93 (379)
T ss_pred CHHHHHHHHHHhc-CCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 5677788888888 8899999998642 6789999998777665543 222 34444555678999876
Q ss_pred ceee
Q psy9357 95 CISS 98 (132)
Q Consensus 95 cvSS 98 (132)
|-=|
T Consensus 94 GGGS 97 (379)
T TIGR02638 94 GGGS 97 (379)
T ss_pred CChH
Confidence 6533
No 33
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=80.21 E-value=7.3 Score=33.01 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN 94 (132)
..+++|.+.++++ +.++++|-||..- .++++++.|+..++.+..+ |. ...++++--.++|..||=
T Consensus 12 g~l~~l~~~l~~~-g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIai 90 (374)
T cd08189 12 GSLAQLPAAISQL-GVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAV 90 (374)
T ss_pred CHHHHHHHHHHhc-CCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567788888888 8899999998642 5789999998777655443 32 344555556789999876
Q ss_pred ceee
Q psy9357 95 CISS 98 (132)
Q Consensus 95 cvSS 98 (132)
|--|
T Consensus 91 GGGS 94 (374)
T cd08189 91 GGGS 94 (374)
T ss_pred CCcc
Confidence 5533
No 34
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=80.20 E-value=15 Score=29.28 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=63.6
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC---C----C-chHHHHHHHhhcC
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS---D----Q-SPHVDLAILSQAN 89 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~Il~~A~ 89 (132)
+..|+.....+.+-+++.+. +.++|.|.++.+. ..+.+++++++.|++|+.. + | .++|..+.-+.+|
T Consensus 116 r~~~~~~~~~~~l~~~~~~~-~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd 194 (312)
T cd06346 116 RTAPSDALQGQALAQLAAER-GYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPD 194 (312)
T ss_pred EecCCcHHHHHHHHHHHHHc-CCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCC
Confidence 34566666677777777776 7899999885554 3667788888889988752 1 2 6788888888899
Q ss_pred eeeecceee-cchhhhhhhhcCCCCCCcc
Q psy9357 90 HFIGNCISS-FTAFVKRHRDVKGLPSSFW 117 (132)
Q Consensus 90 ~FIGNcvSS-FTa~V~reR~~~G~ps~F~ 117 (132)
..|..+... ...+++..|+ .|++..+.
T Consensus 195 ~v~~~~~~~~~~~~~~~~~~-~G~~~~~~ 222 (312)
T cd06346 195 ALVVIGYPETGSGILRSAYE-QGLFDKFL 222 (312)
T ss_pred EEEEecccchHHHHHHHHHH-cCCCCceE
Confidence 777665544 4445555554 46543343
No 35
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=79.97 E-value=13 Score=30.04 Aligned_cols=92 Identities=9% Similarity=0.036 Sum_probs=63.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC---CC-------chHHHHHH
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS---DQ-------SPHVDLAI 84 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l---~~-------~~~vDl~I 84 (132)
|.-+..|+.....+.+.+.++.. +.++|.|.++.+. ..+.++++|++.|++|+.. +. .++|-.+-
T Consensus 111 ~~~r~~p~~~~~~~a~~~~~~~~-~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~ 189 (350)
T cd06366 111 YFFRTTPSDSSQNPAIAALLKKF-GWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLK 189 (350)
T ss_pred ceEEcccchHhHHHHHHHHHHHC-CCcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHh
Confidence 44467788888888888888887 8899999984443 4778888888888887752 21 34555555
Q ss_pred HhhcCeeeecceeecchhh-hhhhhcCCC
Q psy9357 85 LSQANHFIGNCISSFTAFV-KRHRDVKGL 112 (132)
Q Consensus 85 l~~A~~FIGNcvSSFTa~V-~reR~~~G~ 112 (132)
-..+|++|..+...-...+ +.-|+ .|+
T Consensus 190 ~~~~dvvi~~~~~~~~~~~~~~a~~-~g~ 217 (350)
T cd06366 190 EKDSRVIVVHFSPDLARRVFCEAYK-LGM 217 (350)
T ss_pred cCCCeEEEEECChHHHHHHHHHHHH-cCC
Confidence 5679999987776655544 33343 344
No 36
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=79.90 E-value=12 Score=30.48 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC---C----C-chHHHHHHHhhcCeeee
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS---D----Q-SPHVDLAILSQANHFIG 93 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~Il~~A~~FIG 93 (132)
.-.++...++.+..+. +.|+|+|..+.+. +.+.++++|++.|++||.- | | .++|.-+.-..+|..|-
T Consensus 116 ~~~~~~~~~~~~~~~~-g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~ 194 (348)
T cd06355 116 PNQQIIPAVDWLMSNK-GGKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVS 194 (348)
T ss_pred hHHhHHHHHHHHHhcc-CCCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEE
Confidence 3334444444444444 7999999985554 4566778888888888752 2 3 78898888899998654
Q ss_pred cc-eeecchhhhhhhhc
Q psy9357 94 NC-ISSFTAFVKRHRDV 109 (132)
Q Consensus 94 Nc-vSSFTa~V~reR~~ 109 (132)
-. -.....+++..|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~ 211 (348)
T cd06355 195 TVNGDSNVAFFKQLKAA 211 (348)
T ss_pred eccCCchHHHHHHHHHc
Confidence 32 23345566766655
No 37
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=79.79 E-value=2.9 Score=31.55 Aligned_cols=41 Identities=15% Similarity=0.330 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHh-CCCcEEEEecCCccc--HHHHHHhhc
Q psy9357 25 PSVETVVRQLKRVVREH-GQIKYIFVATDNNNL--NEPLKEAFK 65 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~-~~lk~VfIaTD~~~~--~~eLk~~l~ 65 (132)
-..++|.++|++.+++. +..+.|||+||.+-+ +..|...+.
T Consensus 113 ~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~~~~ri~~~~~~~~ 156 (177)
T PF09580_consen 113 FNTKKIKKKVEKAVKSADPRIYNVYVSTDPDIFDRIRNLANRIR 156 (177)
T ss_pred cchhHHHHHHHHHHHHhCCCccEEEEEcCHHHHHHHHHHHHHHH
Confidence 45678999999999985 577999999998753 666666554
No 38
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=79.58 E-value=8.2 Score=32.73 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CCc----hHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQS----PHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~~----~~vDl~Il~~A~~FIGN 94 (132)
..++++...++.+ +.++++|-||..- ..+++++.|+..++.+..+ |.. ..++++--..+|..||=
T Consensus 14 g~l~~l~~~l~~~-g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 92 (377)
T cd08176 14 GAIKEIGDELKNL-GFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISI 92 (377)
T ss_pred CHHHHHHHHHHHh-CCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4677888888888 8899999998653 5789999998777655443 222 34444445678999976
Q ss_pred ceee
Q psy9357 95 CISS 98 (132)
Q Consensus 95 cvSS 98 (132)
|-=|
T Consensus 93 GGGS 96 (377)
T cd08176 93 GGGS 96 (377)
T ss_pred CCcH
Confidence 6533
No 39
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=79.50 E-value=3.2 Score=28.03 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=27.1
Q ss_pred EEEEec---CCcccHHHHHHhhccCCcEEEe---C--CCc--hHHHHHHHhhcCeeee
Q psy9357 46 YIFVAT---DNNNLNEPLKEAFKRTEIRIVP---S--DQS--PHVDLAILSQANHFIG 93 (132)
Q Consensus 46 ~VfIaT---D~~~~~~eLk~~l~~~~~~vv~---l--~~~--~~vDl~Il~~A~~FIG 93 (132)
+|||+| |=..+.+.|.+.+.+.+...+. . .+. ..+=+--..++|+|||
T Consensus 1 rVFiSSt~~Dl~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ 58 (83)
T PF13271_consen 1 RVFISSTFRDLKEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFIL 58 (83)
T ss_pred CEEEecChhhHHHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEE
Confidence 488888 4334556677777655543332 1 222 2222334489999997
No 40
>cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA). This subgroup contains proteins similar to the Type I DNA topoisomerases: E. coli topisomerases I and III, eukaryotic topoisomerase III and, ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA. These enzymes cleave one strand of the DNA duplex, covalently link to the 5' phosphoryl end of the DNA break and allow the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general b
Probab=79.41 E-value=4.1 Score=30.04 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=30.5
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccH----HHHHHhhc
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLN----EPLKEAFK 65 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~----~eLk~~l~ 65 (132)
...++....++.|+++++ ++..|++|||++.+= .++-+.+.
T Consensus 72 ~~~~~~~~~~~~ik~l~~---~~d~iiiAtD~DrEGE~I~~~i~~~~~ 116 (142)
T cd01028 72 VVIPDKKKQLKALKKLAK---KADEIVLATDPDREGELIAWEILEVLK 116 (142)
T ss_pred EeCCcHHHHHHHHHHHHh---cCCEEEEcCCCCcchHHHHHHHHHHhC
Confidence 456778888888888886 569999999999743 34445554
No 41
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=78.99 E-value=8.2 Score=32.72 Aligned_cols=69 Identities=20% Similarity=0.128 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN 94 (132)
..++++.+.+++. +.++++|-||..- +++++.+.|++.++++..+ |. ...++++--.++|..||=
T Consensus 9 g~~~~l~~~~~~~-~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 87 (375)
T cd08194 9 GAVDETGAVLADL-GGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIAL 87 (375)
T ss_pred CHHHHHHHHHHHc-CCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3567777777776 7789999998643 6788999998777655432 33 344455556788999876
Q ss_pred ceee
Q psy9357 95 CISS 98 (132)
Q Consensus 95 cvSS 98 (132)
|-=|
T Consensus 88 GGGS 91 (375)
T cd08194 88 GGGS 91 (375)
T ss_pred CCch
Confidence 5533
No 42
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=78.95 E-value=2.6 Score=35.51 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=64.8
Q ss_pred ccCCcccccccCCccccccccCCCH--HHHHHHHHHHHHHhCCCcEEEEec---CCcccHHHHHHhhccCCcEEEeC---
Q psy9357 3 TNAPQCLGYRNEYGVATEELCFPSV--ETVVRQLKRVVREHGQIKYIFVAT---DNNNLNEPLKEAFKRTEIRIVPS--- 74 (132)
Q Consensus 3 ~~spqC~g~~~e~~~lt~~~C~Ps~--~~I~~~ik~~~~~~~~lk~VfIaT---D~~~~~~eLk~~l~~~~~~vv~l--- 74 (132)
++.|+|....++...-...+|+|.. .+++++|.+.+.+. +++... -+ |.-.|+. |+.+++..+++||++
T Consensus 65 ~e~~~~i~DfygFP~~ly~~~Y~a~G~peLa~~i~~~l~~~-~v~a~~-~~~gLDHGtwvp-L~~M~PdadipVV~iSi~ 141 (268)
T COG3384 65 SEHPETIHDFYGFPDELYDVKYPAPGSPELAQRIVELLAKL-GVPADA-PSWGLDHGTWVP-LRYMFPDADIPVVQISID 141 (268)
T ss_pred ccCcceeeccCCCCHHHHhccCCCCCCHHHHHHHHHHhccc-CccccC-CccCCCccceee-ehhhCCccCCcEEEEecC
Confidence 4568888777777788889998764 78999999999987 777665 22 4444766 788888888999987
Q ss_pred CCchHHHHHHHhhc--------Ceeeecc
Q psy9357 75 DQSPHVDLAILSQA--------NHFIGNC 95 (132)
Q Consensus 75 ~~~~~vDl~Il~~A--------~~FIGNc 95 (132)
+..+.-|++=+||| =.|||+|
T Consensus 142 ~~~~~~~h~~lG~al~~lree~vlilaSG 170 (268)
T COG3384 142 CTLSPADHYELGRALRKLREEGVLILASG 170 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCEEEEecC
Confidence 33455566655555 3467766
No 43
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=78.91 E-value=18 Score=30.09 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=67.9
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHHHHHhhc
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQA 88 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~A 88 (132)
..|..+-.++..-+..++++. +.|.|+|..+... +.+.++++|+..|.+++. + .+ .++|..+.-..+
T Consensus 126 r~~~~~~~q~~~~~~~l~~~~-~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 204 (366)
T COG0683 126 RTGPTDNQQAAAAADYLVKKG-GKKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGP 204 (366)
T ss_pred EecCChHHHHHHHHHHHHHhc-CCcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeCCCCCChHHHHHHHHhcCC
Confidence 445566666666666666665 5568888885544 688888888888886443 2 22 788999999999
Q ss_pred C-eeeecceeecchhhhhhhhcCCCCCCcccC
Q psy9357 89 N-HFIGNCISSFTAFVKRHRDVKGLPSSFWAF 119 (132)
Q Consensus 89 ~-~FIGNcvSSFTa~V~reR~~~G~ps~F~g~ 119 (132)
| +|+|....+...+++..|+. |+...+.+.
T Consensus 205 d~v~~~~~~~~~~~~~r~~~~~-G~~~~~~~~ 235 (366)
T COG0683 205 DAVLVGGYGPDAALFLRQAREQ-GLKAKLIGG 235 (366)
T ss_pred CEEEECCCCccchHHHHHHHHc-CCCCccccc
Confidence 9 78888888888888888765 444433333
No 44
>cd03362 TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=78.88 E-value=3.3 Score=30.90 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=30.4
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhcc
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKR 66 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~ 66 (132)
...++.+.+++.|+++++ ++..|++|||++.+ ..++-+.+..
T Consensus 80 ~~~~~~~~~~~~ik~l~~---~ad~ii~atD~DrEGE~I~~~i~~~~~~ 125 (151)
T cd03362 80 KVDKGKKKQFKVLKKLAK---RADEIVIATDADREGELIGREILEYAKC 125 (151)
T ss_pred EECccHHHHHHHHHHHHh---CCCeEEEccCCCccccHHHHHHHHHhCC
Confidence 345677888888888887 56999999999873 3345555543
No 45
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=78.80 E-value=7.3 Score=32.82 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeecceee
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGNCISS 98 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGNcvSS 98 (132)
.++++.+.++++ +.++++|-||... +.+.+++.|+..++.+..+ |. ...++++--.++|..||=|--|
T Consensus 10 ~l~~l~~~~~~~-g~~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 88 (367)
T cd08182 10 AIAKLPSLLKGL-GGKRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGS 88 (367)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 456777778887 8899999999776 5778888898767655543 32 2444555556789998766533
No 46
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=78.74 E-value=23 Score=27.90 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=60.5
Q ss_pred ccCCCHHHHHHHHHHHHH-HhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC---C----C-chHHHHHHHhhc
Q psy9357 22 LCFPSVETVVRQLKRVVR-EHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS---D----Q-SPHVDLAILSQA 88 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~-~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~Il~~A 88 (132)
+..|+.....+.+-.++. .. +.++|.+.++...+ .+.|+++++..|++|+.. + + .+++..+--..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~ 191 (334)
T cd06342 113 RVVARDDQQGPAAAKYAVETL-KAKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANP 191 (334)
T ss_pred eccCCcHHHHHHHHHHHHHhc-CCCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCC
Confidence 445666667777777654 44 67889888855554 456677777678887753 2 1 466777666678
Q ss_pred Ceeeeccee-ecchhhhhhhhcCCCCCCcccC
Q psy9357 89 NHFIGNCIS-SFTAFVKRHRDVKGLPSSFWAF 119 (132)
Q Consensus 89 ~~FIGNcvS-SFTa~V~reR~~~G~ps~F~g~ 119 (132)
|+.|-.+.. ....+++.-++ .|+...|.|.
T Consensus 192 ~~vi~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 222 (334)
T cd06342 192 DAVFFGGYYPEAGPLVRQMRQ-LGLKAPFMGG 222 (334)
T ss_pred CEEEEcCcchhHHHHHHHHHH-cCCCCcEEec
Confidence 988866544 34445555554 4655545443
No 47
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=78.48 E-value=3.8 Score=30.60 Aligned_cols=61 Identities=16% Similarity=0.301 Sum_probs=43.4
Q ss_pred cEEEEec-C-Cc-c--cHHHHHHhhccCCcEEEeCCC-chHHHHHHHhhcCeeeecceeecchhhhh
Q psy9357 45 KYIFVAT-D-NN-N--LNEPLKEAFKRTEIRIVPSDQ-SPHVDLAILSQANHFIGNCISSFTAFVKR 105 (132)
Q Consensus 45 k~VfIaT-D-~~-~--~~~eLk~~l~~~~~~vv~l~~-~~~vDl~Il~~A~~FIGNcvSSFTa~V~r 105 (132)
+-+||.= + .. . =.+||.+.|++.||+++...+ ...--+.+.++|+++||-.-|.++--+-.
T Consensus 104 ~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~ 170 (206)
T PF04577_consen 104 RILYISRRKSGSRRILNEDELLEILKKYGFEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNLLFM 170 (206)
T ss_pred eEEEEecCCCCCCcCcCHHHHHHHHhhCCeEEEeCCCCCHHHHHHHhcCCCEEEecCchHhheeeec
Confidence 5558876 2 22 2 366888999888998888632 33333458899999999999998876654
No 48
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=78.14 E-value=22 Score=28.89 Aligned_cols=95 Identities=11% Similarity=0.137 Sum_probs=61.4
Q ss_pred cccCCCHHHHHHHHHHHHHHh-----CCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC---C----C-chHHHHH
Q psy9357 21 ELCFPSVETVVRQLKRVVREH-----GQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS---D----Q-SPHVDLA 83 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~-----~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~ 83 (132)
-+..|+-......+-.++..+ .+.++|++.++...| .+.++.++++.|++|+.. + + .+++..+
T Consensus 116 fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l 195 (347)
T cd06340 116 FRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTSEVLKL 195 (347)
T ss_pred EecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHH
Confidence 356777666666655555432 156899999866664 455666777778888742 2 2 6788887
Q ss_pred HHhhcCeeeecceeecchhhhhhhhcCCCCCC
Q psy9357 84 ILSQANHFIGNCISSFTAFVKRHRDVKGLPSS 115 (132)
Q Consensus 84 Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps~ 115 (132)
.-..+|.+|-.+...-...+-++-...|++..
T Consensus 196 ~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~~ 227 (347)
T cd06340 196 KAANPDAILPASYTNDAILLVRTMKEQRVEPK 227 (347)
T ss_pred HhcCCCEEEEcccchhHHHHHHHHHHcCCCCc
Confidence 77889988877765554444444445676543
No 49
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=77.55 E-value=9.3 Score=32.10 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CCc----hHHHHHHHhhcCeeeec
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQS----PHVDLAILSQANHFIGN 94 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~~----~~vDl~Il~~A~~FIGN 94 (132)
..++++...++++ +.++++|-||... +.+++.+.|+..++++..+ |.. ..++++--..+|.+||=
T Consensus 9 g~l~~l~~~l~~~-~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~Iiai 87 (370)
T cd08551 9 GAIEKLGEEIKNL-GGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAV 87 (370)
T ss_pred CHHHHHHHHHHHc-CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3567777888887 8899999998653 5688999998766655432 333 34444445678999977
Q ss_pred ceeec
Q psy9357 95 CISSF 99 (132)
Q Consensus 95 cvSSF 99 (132)
|--|-
T Consensus 88 GGGs~ 92 (370)
T cd08551 88 GGGSV 92 (370)
T ss_pred CCchH
Confidence 66543
No 50
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=77.21 E-value=7.9 Score=26.51 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEeCCCchHH
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVPSDQSPHV 80 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~l~~~~~v 80 (132)
++.+.+++- +++-|+||.|.++. ...+..+=+..++.++..+....+
T Consensus 18 ~v~kai~~g-kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eL 65 (82)
T PRK13602 18 QTVKALKRG-SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKL 65 (82)
T ss_pred HHHHHHHcC-CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 344445554 89999999998874 444554445557877766443333
No 51
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=76.22 E-value=9.8 Score=32.92 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeecc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGNc 95 (132)
.++++-+.++++ +.++++|-||..- .++++.+.|+..++++..+ |. ...++++--.++|..||=|
T Consensus 10 ~~~~l~~~l~~~-g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiG 88 (414)
T cd08190 10 VTAEVGMDLKNL-GARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVG 88 (414)
T ss_pred HHHHHHHHHHHc-CCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 466777778887 8899999998653 5789999998777655443 33 3445555566789999876
Q ss_pred eeecc
Q psy9357 96 ISSFT 100 (132)
Q Consensus 96 vSSFT 100 (132)
--|--
T Consensus 89 GGSvi 93 (414)
T cd08190 89 GGSVI 93 (414)
T ss_pred CccHH
Confidence 55543
No 52
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=75.87 E-value=7.8 Score=29.80 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccH----HHHHHhhc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLN----EPLKEAFK 65 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~----~eLk~~l~ 65 (132)
|+.+.+++.|++.++ +++.|++|||++.+= .++.+.+.
T Consensus 103 ~~~~~~~~~l~~l~~---~~~~iiiatD~drEGe~I~~~i~~~~~ 144 (170)
T cd03361 103 DDKLETLEALRELAL---EVDEVLIATDPDTEGEKIAWDVYLALR 144 (170)
T ss_pred cchHHHHHHHHHHHh---hCCEEEEecCCCccHHHHHHHHHHHhc
Confidence 678888888988886 568999999998743 34555554
No 53
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=75.66 E-value=9.6 Score=26.38 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchHHHHH
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDLA 83 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl~ 83 (132)
+++.+.+++- +++-||||+|.++ ....|..+=+..++.++.......+-++
T Consensus 14 ~~vlkaIk~g-kakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG~A 65 (82)
T PRK13601 14 KQTLKAITNC-NVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVM 65 (82)
T ss_pred HHHHHHHHcC-CeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHHHH
Confidence 3444455554 8999999999885 3555555555567777644333333333
No 54
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=75.27 E-value=40 Score=27.10 Aligned_cols=90 Identities=10% Similarity=0.221 Sum_probs=59.3
Q ss_pred cccCCCHHHHHHHHHHHHHH-----hCCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC---C----C-chHHHHH
Q psy9357 21 ELCFPSVETVVRQLKRVVRE-----HGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS---D----Q-SPHVDLA 83 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~-----~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~ 83 (132)
-+..|+-......+-.+++. . +.++|.+..+.+.+ ...+++++++.|++|+.. + + .+++..+
T Consensus 117 fr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l 195 (344)
T cd06345 117 FRAGPTNSSYAQSVADALKETLVDKH-GFKTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQI 195 (344)
T ss_pred EecCCCcHHHHHHHHHHHHHhhcccC-CCceEEEEecCchhhhHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHH
Confidence 34556655555666555554 5 78999999876664 455566676778887752 1 2 6778887
Q ss_pred HHhhcCeeeecceeecc-hhhhhhhhcCCC
Q psy9357 84 ILSQANHFIGNCISSFT-AFVKRHRDVKGL 112 (132)
Q Consensus 84 Il~~A~~FIGNcvSSFT-a~V~reR~~~G~ 112 (132)
.-..+|..|.-+...-. .+++.-|. .|+
T Consensus 196 ~~~~~d~v~~~~~~~~~~~~~~~~~~-~g~ 224 (344)
T cd06345 196 KAADPDVIIAGFSGNVGVLFTQQWAE-QKV 224 (344)
T ss_pred HhcCCCEEEEeecCchHHHHHHHHHH-cCC
Confidence 88889998888776544 45555555 444
No 55
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.15 E-value=8.1 Score=32.39 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEe---C---CC----chHHHHHHHhhcCeeeecc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVP---S---DQ----SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~---l---~~----~~~vDl~Il~~A~~FIGNc 95 (132)
.++++|-+.++.+ + ++++|-||... ..+.+.+.|+..++++.. . |. ...++++--.++|.+||=|
T Consensus 9 g~~~~l~~~~~~~-~-~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavG 86 (345)
T cd08171 9 DAYKKIPEVCEKY-G-KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVG 86 (345)
T ss_pred CHHHHHHHHHHhc-C-CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeC
Confidence 3566777777776 6 89999999654 467788888776665432 2 33 3445555567889998766
Q ss_pred eee
Q psy9357 96 ISS 98 (132)
Q Consensus 96 vSS 98 (132)
-=|
T Consensus 87 GGs 89 (345)
T cd08171 87 GGK 89 (345)
T ss_pred CcH
Confidence 543
No 56
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=75.03 E-value=33 Score=27.55 Aligned_cols=95 Identities=12% Similarity=0.189 Sum_probs=57.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHHHHHhhcC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQAN 89 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~A~ 89 (132)
+.|+-.....-+...+++.++.++|++.. +.+. ..+.+++++++.|++++. . ++ .++|..+..+.+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d 194 (344)
T cd06348 115 SAPEAVVAPAAIAAALKLNPGIKRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPD 194 (344)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCeEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCC
Confidence 34444444444555555433789998775 3332 456777777777887774 2 22 7888888889999
Q ss_pred eeeeccee-ecchhhhhhhhcCCCCCCccc
Q psy9357 90 HFIGNCIS-SFTAFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 90 ~FIGNcvS-SFTa~V~reR~~~G~ps~F~g 118 (132)
..|-.+.. ....+++.-|+ .|....|+|
T Consensus 195 ~vi~~~~~~~~~~~~~~~~~-~g~~~~~~~ 223 (344)
T cd06348 195 LIVISALAADGGNLVRQLRE-LGYNGLIVG 223 (344)
T ss_pred EEEECCcchhHHHHHHHHHH-cCCCCceec
Confidence 85555544 44555665555 455444443
No 57
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=74.86 E-value=29 Score=28.17 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=60.6
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C-C---C-chHHHHHHHhhcCe
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S-D---Q-SPHVDLAILSQANH 90 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l-~---~-~~~vDl~Il~~A~~ 90 (132)
..|+.......+-.++.+..+.++|.|..+... +.+.++++|++.|++++. + + | .+.|..+.-..+|+
T Consensus 117 ~~~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~ 196 (347)
T cd06335 117 VSADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADA 196 (347)
T ss_pred eccChHHHHHHHHHHHHHhcCCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCE
Confidence 345555445555555444325899999984443 577888888888888764 2 2 2 68888888889998
Q ss_pred eeecceee-cchhhhhhhhcCCCCCCc
Q psy9357 91 FIGNCISS-FTAFVKRHRDVKGLPSSF 116 (132)
Q Consensus 91 FIGNcvSS-FTa~V~reR~~~G~ps~F 116 (132)
.|..+... +..+++..|. .|+...+
T Consensus 197 v~~~~~~~~~~~~~~~~~~-~g~~~~~ 222 (347)
T cd06335 197 IIIVGNGPEGAQIANGMAK-LGWKVPI 222 (347)
T ss_pred EEEEecChHHHHHHHHHHH-cCCCCcE
Confidence 88777664 4456665555 4655443
No 58
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=74.76 E-value=22 Score=28.54 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCc---ccHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeeeec
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNN---NLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGN 94 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~---~~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FIGN 94 (132)
++.+++.+..+.++. +.+-++|+.... ...++|.+.++. ..+++ .+..+.-=+.+.++|+.+||+
T Consensus 190 ~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~-~~~i~-~~~~~~e~~~~i~~~~~vI~~ 257 (298)
T TIGR03609 190 LLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLG-PAEVL-SPLDPEELLGLFASARLVIGM 257 (298)
T ss_pred HHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCC-CcEEE-ecCCHHHHHHHHhhCCEEEEe
Confidence 456777888888877 888888886422 246677777753 23444 333454456789999999996
No 59
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=74.49 E-value=5.7 Score=27.26 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCccc
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNL 56 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~ 56 (132)
.....++.|++.++ +.+.|+||||++..
T Consensus 45 ~~~~~i~~l~~~~~---~~~~iiiatD~D~E 72 (100)
T PF01751_consen 45 DKKKQIKNLKKLLK---KADEIIIATDPDRE 72 (100)
T ss_dssp TTHHHHHHHHHHHH---SCSEEEEEC-SSHH
T ss_pred cccccchhhHHHhh---hccEeeecCCCChH
Confidence 33445666666654 67999999999974
No 60
>PRK07714 hypothetical protein; Provisional
Probab=74.33 E-value=14 Score=25.84 Aligned_cols=61 Identities=10% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeeee
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIG 93 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FIG 93 (132)
+++.+.+++. +++-|+||+|.++ ..+++..+-...++.++.......+..++...-..-||
T Consensus 24 ~~v~~al~~g-~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eLG~a~Gk~~~~~va 85 (100)
T PRK07714 24 ELVLKEVRSG-KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLGHAIGKDERVVVA 85 (100)
T ss_pred HHHHHHHHhC-CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCcceEEE
Confidence 3556666665 8999999999776 46666665444567776555555666665543333343
No 61
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=73.46 E-value=14 Score=31.35 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc-----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN-----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG 93 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~-----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG 93 (132)
..++++-..++++ + ++++|.||.. .+++.+++.|+..++.+..+ |. ...++++--..+|.+||
T Consensus 15 g~~~~l~~~~~~~-~-~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 92 (382)
T cd08187 15 GTESELGKELKKY-G-KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILA 92 (382)
T ss_pred CHHHHHHHHHHHh-C-CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4456666777776 5 7888888753 35789999998777765543 22 23445555678899987
Q ss_pred cceee
Q psy9357 94 NCISS 98 (132)
Q Consensus 94 NcvSS 98 (132)
=|--|
T Consensus 93 iGGGS 97 (382)
T cd08187 93 VGGGS 97 (382)
T ss_pred eCChH
Confidence 66533
No 62
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=71.83 E-value=26 Score=27.96 Aligned_cols=92 Identities=10% Similarity=-0.029 Sum_probs=64.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CCC-------chHHHHHHH
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SDQ-------SPHVDLAIL 85 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~~-------~~~vDl~Il 85 (132)
.-+-.|+.......+-++++.. +.++|.|.++.+. ..+.+++.+++.|++|+. ++. .+++..+--
T Consensus 137 ~fr~~p~~~~~~~a~~~~~~~~-~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~ 215 (348)
T cd06350 137 FFRTVPSDTSQALAIVALLKHF-GWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKS 215 (348)
T ss_pred eeEecCCcHHHHHHHHHHHHHC-CCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHh
Confidence 3356788888888888888887 8999999885444 467788888877887764 221 466666667
Q ss_pred hhcCeeeecceeecchhhhhhhhcCCC
Q psy9357 86 SQANHFIGNCISSFTAFVKRHRDVKGL 112 (132)
Q Consensus 86 ~~A~~FIGNcvSSFTa~V~reR~~~G~ 112 (132)
..+|++|-.+-..-...+-++=...|+
T Consensus 216 ~~~~vvv~~~~~~~~~~~~~~a~~~g~ 242 (348)
T cd06350 216 STARVIVVFGDEDDALRLFCEAYKLGM 242 (348)
T ss_pred CCCcEEEEEeCcHHHHHHHHHHHHhCC
Confidence 778999887776655555554444565
No 63
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=71.60 E-value=39 Score=26.97 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=60.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhCC--CcEEEEecCCccc----HHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhh
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQ--IKYIFVATDNNNL----NEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQ 87 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~--lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~ 87 (132)
...|+.......+-.++++. + .++|.+..+++.+ .+.++++|++.|++|+. ++ | .++|..+.-..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~ 196 (345)
T cd06338 118 GTLPPASQYAKSLLEMLVAL-DPRPKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAG 196 (345)
T ss_pred EecCchHHHHHHHHHHHHhc-CCCCceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcC
Confidence 45678777777777777776 4 8899988866654 45567777777888874 22 2 56777777777
Q ss_pred cCeeeeccee-ecchhhhhhhhcCCCC
Q psy9357 88 ANHFIGNCIS-SFTAFVKRHRDVKGLP 113 (132)
Q Consensus 88 A~~FIGNcvS-SFTa~V~reR~~~G~p 113 (132)
+|..|-.+.. .+..+++..|. .|+.
T Consensus 197 ~d~i~~~~~~~~~~~~~~~~~~-~g~~ 222 (345)
T cd06338 197 PDAVVVAGHFPDAVLLVRQMKE-LGYN 222 (345)
T ss_pred CCEEEECCcchhHHHHHHHHHH-cCCC
Confidence 8988766654 34445555453 3443
No 64
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=71.49 E-value=31 Score=25.90 Aligned_cols=91 Identities=9% Similarity=0.061 Sum_probs=61.9
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHH----HHHhhccCCcEEEeC---CC-----chHHHHHHHhhc
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEP----LKEAFKRTEIRIVPS---DQ-----SPHVDLAILSQA 88 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~e----Lk~~l~~~~~~vv~l---~~-----~~~vDl~Il~~A 88 (132)
-.-.|+....++.+-++++.. +-+.|.+..+.+.+..+ +++.++..++.++.. +. ...+..+-...+
T Consensus 118 ~~~~p~~~~~~~a~~~~l~~~-~w~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~ 196 (298)
T cd06269 118 LRTVPSDSSQAQAIVDLLKHF-GWTWVGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIPDGSEDIRRLLKELKSSTA 196 (298)
T ss_pred EecCCCcHHHHHHHHHHHHHC-CCeEEEEEEecchhhHHHHHHHHHHHHHCCeeEEEEEEcCCCHHHHHHHHHHHHhcCC
Confidence 446788889999999999987 88888888866665444 444554446666654 21 567777777888
Q ss_pred CeeeecceeecchhhhhhhhcCCC
Q psy9357 89 NHFIGNCISSFTAFVKRHRDVKGL 112 (132)
Q Consensus 89 ~~FIGNcvSSFTa~V~reR~~~G~ 112 (132)
+++|--+-+.-...+-++-...|+
T Consensus 197 ~viv~~~~~~~~~~~l~~a~~~g~ 220 (298)
T cd06269 197 RVIVVFSSEEDALRLLEEAVELGM 220 (298)
T ss_pred cEEEEEechHHHHHHHHHHHHcCC
Confidence 999988874444444444444454
No 65
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=71.38 E-value=42 Score=26.57 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhcCee
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQANHF 91 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A~~F 91 (132)
.|+.......+-+.+.+. +.|+|.+.++...| .+.++++|++.|++++.. .| .+++..+.-..+|..
T Consensus 115 ~~~~~~~~~~~~~~l~~~-~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v 193 (336)
T cd06360 115 SFSNAQWAAPMGKYAADD-GYKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAV 193 (336)
T ss_pred eCchHHHHHHHHHHHHHc-CCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEE
Confidence 355556666666777776 78999998854444 556777887778877642 22 788888888888877
Q ss_pred eecc-eeecchhhhhhhhcCCC
Q psy9357 92 IGNC-ISSFTAFVKRHRDVKGL 112 (132)
Q Consensus 92 IGNc-vSSFTa~V~reR~~~G~ 112 (132)
+..+ -+....+++..| ..|+
T Consensus 194 ~~~~~~~~~~~~~~~~~-~~g~ 214 (336)
T cd06360 194 FVFFAGGDAIKFVKQYD-AAGL 214 (336)
T ss_pred EEecccccHHHHHHHHH-HcCC
Confidence 6433 333344454444 3354
No 66
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=70.78 E-value=11 Score=31.31 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEE------------------------eC-------
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIV------------------------PS------- 74 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv------------------------~l------- 74 (132)
+..-|..+|+++++.- .+.+++|||--.+.=+-|.......|+.|+ ++
T Consensus 27 ~~pmI~~~lervrks~-~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~ 105 (241)
T COG1861 27 GEPMIEYQLERVRKSK-DLDKIVVATSDKEEDDALEEVCRSHGFYVFRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFL 105 (241)
T ss_pred CCchHHHHHHHHhccc-cccceEEEecCCcchhHHHHHHHHcCeeEecCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCC
Confidence 3445677788877775 789999999444444444444444344443 33
Q ss_pred -CC--chHHHHHHHhhcCee------eecceeecchhhhh
Q psy9357 75 -DQ--SPHVDLAILSQANHF------IGNCISSFTAFVKR 105 (132)
Q Consensus 75 -~~--~~~vDl~Il~~A~~F------IGNcvSSFTa~V~r 105 (132)
|+ ..+||+..-.-|||+ +|.||==|++..-+
T Consensus 106 dp~l~d~~v~~~l~~gaDY~s~~~~p~G~~vEV~~a~~L~ 145 (241)
T COG1861 106 DPELVDAAVDRHLEKGADYVSNTGAPLGTDVEVMKARALK 145 (241)
T ss_pred CHHHHHHHHHHHHhcCCccccccCCccccceeeeehHHHH
Confidence 22 678888888899997 78888888888744
No 67
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=70.63 E-value=8.8 Score=28.37 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeeeecceeecchhhhh
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKR 105 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~r 105 (132)
..+.+..+++++ ++..||...|... +-++|++.|++.+++++...+..-++...+.. =.|....+||.|-++
T Consensus 76 ~~~~l~~l~~~~-~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~~i~~---~~~~~~~vFtpf~k~ 151 (165)
T PF00875_consen 76 PEEVLPELAKEY-GATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPDDIPK---KDGEPYKVFTPFRKK 151 (165)
T ss_dssp HHHHHHHHHHHH-TESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HHHCHS---TTSSSHSSHHHHHHH
T ss_pred hHHHHHHHHHhc-CcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEecccccc---CCCCCcccHHHHHHH
Confidence 445566777788 8999998887554 46678888887788888764433344433332 246888999999888
Q ss_pred hhhcCC
Q psy9357 106 HRDVKG 111 (132)
Q Consensus 106 eR~~~G 111 (132)
-+....
T Consensus 152 ~~~~~~ 157 (165)
T PF00875_consen 152 WEKQLL 157 (165)
T ss_dssp HHCHCS
T ss_pred HHhcCC
Confidence 776554
No 68
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=70.45 E-value=6.8 Score=30.37 Aligned_cols=39 Identities=13% Similarity=0.346 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHH-hCCCcEEEEecCCccc--HHHHHHhhc
Q psy9357 27 VETVVRQLKRVVRE-HGQIKYIFVATDNNNL--NEPLKEAFK 65 (132)
Q Consensus 27 ~~~I~~~ik~~~~~-~~~lk~VfIaTD~~~~--~~eLk~~l~ 65 (132)
.++|.++|.+.+++ .+..++|||++|.+-+ +.++...+.
T Consensus 96 ~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd~~~Ri~~~~~~i~ 137 (158)
T TIGR02898 96 TDELKEKVAETVKSTDNRIANVYVSADPDTVERIRRYGKGIK 137 (158)
T ss_pred HHHHHHHHHHHHHhhCCCcceEEEEcCHHHHHHHHHHHHHhH
Confidence 35677777777777 5789999999998754 555555554
No 69
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=70.32 E-value=34 Score=27.68 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred ccCCCHHHHHHHHHHH-HHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhc
Q psy9357 22 LCFPSVETVVRQLKRV-VREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQA 88 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~-~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A 88 (132)
.+.|+..+....+-++ +++. +.++|.+..+.+. ..+.+++.|++.|++++.. .+ .+++..+.-..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~-g~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~ 200 (362)
T cd06343 122 GWQPSYQDEARIYAKYLVEEK-PNAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGA 200 (362)
T ss_pred ecCCChHHHHHHHHHHHHHhC-CCceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCC
Confidence 4557766656666564 4455 7888888885554 4666777777778877642 22 688888888999
Q ss_pred Ceeeecceee-cchhhhhhhhcCCCC
Q psy9357 89 NHFIGNCISS-FTAFVKRHRDVKGLP 113 (132)
Q Consensus 89 ~~FIGNcvSS-FTa~V~reR~~~G~p 113 (132)
|+.|..+... ...+++..|. .|+.
T Consensus 201 d~v~~~~~~~~~~~~~~~~~~-~g~~ 225 (362)
T cd06343 201 DVVVLATTPKFAAQAIRKAAE-LGWK 225 (362)
T ss_pred CEEEEEcCcHHHHHHHHHHHH-cCCC
Confidence 9999988874 4456666655 4654
No 70
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=70.10 E-value=17 Score=26.26 Aligned_cols=52 Identities=6% Similarity=0.072 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEeC-CCchHHHHHHH
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVPS-DQSPHVDLAIL 85 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il 85 (132)
++.+.+++- +++-|+||+|.++. ..++..+-...++.++.+ .....+=.++.
T Consensus 32 ~vlkalk~g-kaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~G 85 (108)
T PTZ00106 32 STLKALRNG-KAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACG 85 (108)
T ss_pred HHHHHHHcC-CeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhC
Confidence 344444444 89999999998874 666776666668888765 44444444444
No 71
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=69.93 E-value=19 Score=29.63 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccC-CcEEEeC--C--C----chHHHHHHHhhcCeeeeccee
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRT-EIRIVPS--D--Q----SPHVDLAILSQANHFIGNCIS 97 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~-~~~vv~l--~--~----~~~vDl~Il~~A~~FIGNcvS 97 (132)
.++++.+.++.+ +.++++|-||..- +.+++++.|++. .+.+... + . ...++++--.++|..||=|--
T Consensus 10 ~l~~l~~~~~~~-g~~~~liv~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 88 (332)
T cd07766 10 AIEKIGEEIKRG-GFDRALVVSDEGVVKGVGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGG 88 (332)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeCCchhhhHHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 456677777777 7899999998653 578889999764 3333332 2 2 345555556688999876654
Q ss_pred ecc
Q psy9357 98 SFT 100 (132)
Q Consensus 98 SFT 100 (132)
|-.
T Consensus 89 s~~ 91 (332)
T cd07766 89 STL 91 (332)
T ss_pred hHH
Confidence 433
No 72
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=69.52 E-value=46 Score=27.67 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHH-HHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHHHHHhhcCe
Q psy9357 24 FPSVETVVRQLKRV-VREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQANH 90 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~-~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~A~~ 90 (132)
.|......+.+-++ .++. +.++|+|..+.+. ..+.+++.|++.|++++. + .| .++|+.+.-..+|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~-~~k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~ 219 (369)
T PRK15404 141 IGLDSDQGPTAAKYILEKV-KPKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDF 219 (369)
T ss_pred CCCcHHHHHHHHHHHHHhc-CCCEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCE
Confidence 34444444444443 4445 7899999985554 355667777778888774 2 23 78999999999999
Q ss_pred eeeccee-ecchhhhhhhhcCCCCCCcc
Q psy9357 91 FIGNCIS-SFTAFVKRHRDVKGLPSSFW 117 (132)
Q Consensus 91 FIGNcvS-SFTa~V~reR~~~G~ps~F~ 117 (132)
++-.+.+ .+..+++.-|+. |+...|.
T Consensus 220 v~~~~~~~~~~~~~k~~~~~-G~~~~~i 246 (369)
T PRK15404 220 VYYGGYHPEMGQILRQAREA-GLKTQFM 246 (369)
T ss_pred EEECCCchHHHHHHHHHHHC-CCCCeEE
Confidence 7755544 344566655544 5443343
No 73
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=69.36 E-value=14 Score=31.25 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEE--eC---CC----chHHHHHHHhhcCeeeecc
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIV--PS---DQ----SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv--~l---~~----~~~vDl~Il~~A~~FIGNc 95 (132)
...++++...++++ + ++++|-||... +.+++.+.|+..++.++ .. |. ...++++--.++|.+||=|
T Consensus 15 ~g~~~~l~~~l~~~-g-~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavG 92 (366)
T PRK09423 15 KGALARLGEYLKPL-G-KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIG 92 (366)
T ss_pred CCHHHHHHHHHHHc-C-CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 34567777778887 7 89999998653 56788888887666443 22 33 3444555566889998776
Q ss_pred eeecchhh
Q psy9357 96 ISSFTAFV 103 (132)
Q Consensus 96 vSSFTa~V 103 (132)
--|-..-.
T Consensus 93 GGsv~D~a 100 (366)
T PRK09423 93 GGKTLDTA 100 (366)
T ss_pred ChHHHHHH
Confidence 65544333
No 74
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=68.84 E-value=34 Score=27.90 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=63.1
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcE--EEeC----C----C-chHHHHHHH
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIR--IVPS----D----Q-SPHVDLAIL 85 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~--vv~l----~----~-~~~vDl~Il 85 (132)
-+..|+.....+.+..+++.. +-++|.|..+.+.+ .+.|+++|++.+++ ++.. + + ...+..+--
T Consensus 114 ~R~~p~~~~~~~ai~~ll~~~-~w~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~~l~~ 192 (362)
T cd06367 114 LQTGPSLEQQADVMLEILEEY-DWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLKK 192 (362)
T ss_pred EeecCcHHHHHHHHHHHHHHc-CCeEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeEEeccCCCcchHHHHHHHHh
Confidence 356799888899999999998 89999999977665 88899999877655 5432 1 1 233434445
Q ss_pred hhcCeeeecceeecchhhhhhhhcCCC
Q psy9357 86 SQANHFIGNCISSFTAFVKRHRDVKGL 112 (132)
Q Consensus 86 ~~A~~FIGNcvSSFTa~V~reR~~~G~ 112 (132)
..++++|..|-..-...+-++=...|.
T Consensus 193 ~~~~vivl~~~~~~~~~il~~a~~~g~ 219 (362)
T cd06367 193 LESRVILLYCSKEEAERIFEAAASLGL 219 (362)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC
Confidence 679999988865545545444334454
No 75
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=68.53 E-value=36 Score=26.93 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=58.4
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHH---hhccCCcEEEeC---CC----chHHHHHHHhhcCee
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKE---AFKRTEIRIVPS---DQ----SPHVDLAILSQANHF 91 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~---~l~~~~~~vv~l---~~----~~~vDl~Il~~A~~F 91 (132)
...|+.....+.+-..++.. +.++|.|..|.+.+...|.. .+++.+++|+.. +. .+.+..+-...+|.+
T Consensus 106 ~~~~~~~~~~~a~~~~~~~~-~w~~vaii~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~d~V 184 (324)
T cd06368 106 NLYPSMRDLSDALLDLIKYF-GWRKFVYIYDSDEGLLRLQELLDALSPKGIQVTVRRLDDDTDMYRPLLKEIKREKERRI 184 (324)
T ss_pred EecCCHHHHHHHHHHHHHhc-CCCEEEEEECCcHhHHHHHHHHHhhccCCceEEEEEecCCchHHHHHHHHHhhccCceE
Confidence 34577767777777888777 89999999977766555544 444446766542 22 456666667778898
Q ss_pred eecceeecchhhhhhhhcCCC
Q psy9357 92 IGNCISSFTAFVKRHRDVKGL 112 (132)
Q Consensus 92 IGNcvSSFTa~V~reR~~~G~ 112 (132)
|-.|...=...+-++=...|+
T Consensus 185 i~~~~~~~~~~i~~qa~~~g~ 205 (324)
T cd06368 185 ILDCSPERLKEFLEQAVEVGM 205 (324)
T ss_pred EEECCHHHHHHHHHHHHHhcc
Confidence 887766555545444334454
No 76
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=67.77 E-value=21 Score=30.35 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHh--CCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeee
Q psy9357 30 VVRQLKRVVREH--GQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFI 92 (132)
Q Consensus 30 I~~~ik~~~~~~--~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FI 92 (132)
.++++.+.++++ .+.++++|-||... +++++++.|+..++++..+ |. ...++++--.++|..|
T Consensus 10 ~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 89 (383)
T cd08186 10 AIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVI 89 (383)
T ss_pred HHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 345555555543 14689999998653 4689999998777765543 22 3455555556788888
Q ss_pred ecce
Q psy9357 93 GNCI 96 (132)
Q Consensus 93 GNcv 96 (132)
|=|-
T Consensus 90 aiGG 93 (383)
T cd08186 90 AIGG 93 (383)
T ss_pred EeCC
Confidence 6544
No 77
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=66.71 E-value=16 Score=26.84 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC----CC---chHHHHHHHhhc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS----DQ---SPHVDLAILSQA 88 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l----~~---~~~vDl~Il~~A 88 (132)
.-++++.+-+++. +++-|++|||++-+ -.=|++.|+..+++|-++ |- .-.+|..-|.+|
T Consensus 43 l~i~~L~~ri~~~-~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~GiP~G~~ley~D~~TL~~A 112 (112)
T cd01025 43 LNIDKLLERIAKG-QVKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQGIPVGGELEYADEITLSRA 112 (112)
T ss_pred cCHHHHHHHHhcC-CCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEEcCCCCcceeecCHHHHhcC
Confidence 4455566666665 89999999987752 233666676656655553 43 566777777665
No 78
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=66.56 E-value=39 Score=28.09 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=58.7
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHH---HHHHhhccCCcEEEe--CC-C----chHHHHHHHhhc
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNE---PLKEAFKRTEIRIVP--SD-Q----SPHVDLAILSQA 88 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~---eLk~~l~~~~~~vv~--l~-~----~~~vDl~Il~~A 88 (132)
+.-.+.|+.....+.+..+++.+ +.++|.|..|.+..+. +|.+.+++.+++|+. ++ . .+++..+=...+
T Consensus 115 ~~~~~~~~~~~~~~a~~~~~~~~-~wk~vaily~~~~g~~~l~~~~~~~~~~g~~v~~~~~~~~~~d~~~~L~~ik~~~~ 193 (384)
T cd06393 115 FYVNLYPDYASLSHAILDLVQYL-KWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPTDSDDARPLLKEMKRGRE 193 (384)
T ss_pred eEEEeccCHHHHHHHHHHHHHHc-CCcEEEEEEeCchhHHHHHHHHHhhhccCceEEEEECCCCchHHHHHHHHHhhcCc
Confidence 45567798877778887888888 9999999997666554 455556556776653 32 1 456666555567
Q ss_pred CeeeecceeecchhhhhhhhcCCCC
Q psy9357 89 NHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 89 ~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
+.+|-.|-+.=...+-++=..+|+.
T Consensus 194 ~~iil~~~~~~~~~il~qa~~~gm~ 218 (384)
T cd06393 194 FRIIFDCSHQMAAQILKQAMAMGMM 218 (384)
T ss_pred eEEEEECCHHHHHHHHHHHHHhccc
Confidence 7555555444444444332333443
No 79
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=66.54 E-value=22 Score=25.40 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeeee
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIG 93 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FIG 93 (132)
++.+.+++. +++-|.+|+|..+ -.+++...-+..++.++.+-....+.+++...-..-||
T Consensus 24 ~v~~aik~g-k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 24 KCEEAIKKK-KVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILG 84 (104)
T ss_pred HHHHHHHcC-CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEE
Confidence 456666665 8999999999876 46677776555677777664456666666654444444
No 80
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=66.50 E-value=8.5 Score=31.31 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=47.1
Q ss_pred cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-----cccHHHHHHhhccCCcEEEeC--CCchHHHHHHHhhcC
Q psy9357 17 VATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDN-----NNLNEPLKEAFKRTEIRIVPS--DQSPHVDLAILSQAN 89 (132)
Q Consensus 17 ~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~-----~~~~~eLk~~l~~~~~~vv~l--~~~~~vDl~Il~~A~ 89 (132)
.-|.++|.|-+++.+. ++.|-+||-|=+ +.|+++.+++|++.|.+++.+ .+.+ ...+..||
T Consensus 14 ~~~l~~~~~~~~~~~~---------~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~---~~~l~~ad 81 (233)
T PRK05282 14 TGYLEHALPLIAELLA---------GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADP---VAAIENAE 81 (233)
T ss_pred CchHHHHHHHHHHHHc---------CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhh---HHHHhcCC
Confidence 3444555554444433 267899999933 237999999999999887776 3222 35667777
Q ss_pred eeeecceeecch
Q psy9357 90 HFIGNCISSFTA 101 (132)
Q Consensus 90 ~FIGNcvSSFTa 101 (132)
..+=.+-.||.-
T Consensus 82 ~I~v~GGnt~~l 93 (233)
T PRK05282 82 AIFVGGGNTFQL 93 (233)
T ss_pred EEEECCccHHHH
Confidence 766555555543
No 81
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=66.20 E-value=24 Score=31.57 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=43.7
Q ss_pred ccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-cccHHHHHHhhccCCcEEEeC-CC-chHHHHHHHhh
Q psy9357 18 ATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDN-NNLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAILSQ 87 (132)
Q Consensus 18 lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~-~~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~Il~~ 87 (132)
....+.+||+.+|.+++. +. ++.-||-.|.. .+.-++|.++++. -.|-.| .| .-+|+|++=+.
T Consensus 270 ~s~~~DYPSi~ql~~kL~----e~-nI~~IFAVT~~~~~~Y~~Ls~lipg--s~vg~Ls~DSsNIv~LI~~aY 335 (423)
T smart00187 270 MSTTQDYPSIGQLNQKLA----EN-NINPIFAVTKKQVSLYKELSALIPG--SSVGVLSEDSSNVVELIKDAY 335 (423)
T ss_pred ccCcCCCCCHHHHHHHHH----hc-CceEEEEEcccchhHHHHHHHhcCc--ceeeecccCcchHHHHHHHHH
Confidence 445689999998877654 54 88999988854 4578899999963 344455 44 55666665443
No 82
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=65.56 E-value=22 Score=30.14 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEe--C---CCc----hHHHHHHHhhcCeeeecceee
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVP--S---DQS----PHVDLAILSQANHFIGNCISS 98 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~--l---~~~----~~vDl~Il~~A~~FIGNcvSS 98 (132)
.++++.+.++++ + ++++|-||... ..+++.+.|+..++++.. . |.. ..++++--.++|..||=|--|
T Consensus 10 ~~~~l~~~l~~~-~-~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 86 (374)
T cd08183 10 VAKELPALAAEL-G-RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGS 86 (374)
T ss_pred HHHHHHHHHHHc-C-CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCch
Confidence 456676777766 4 89999998654 678888999877765543 3 222 334444455789888766444
No 83
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=64.87 E-value=8 Score=32.09 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCCHHH-HHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEeC
Q psy9357 24 FPSVET-VVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 24 ~Ps~~~-I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~l 74 (132)
-|.... .-.++...+++. +-++|||+| +..+.++++-+.|+..+++-|.|
T Consensus 151 t~h~an~~Y~~l~~~l~~~-~~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L 202 (262)
T PF06180_consen 151 TPHPANAAYSALQAMLKKH-GYPNVFVGTVEGYPSLEDVIARLKKKGIKKVHL 202 (262)
T ss_dssp -SCHHHHHHHHHHHHHHCC-T-TTEEEEETTSSSBHHHHHHHHHHHT-SEEEE
T ss_pred CCCCccHHHHHHHHHHHhC-CCCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEE
Confidence 333333 347777888876 778899999 77777888888888777765654
No 84
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=64.49 E-value=7.9 Score=30.09 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEec-CCcccHHH
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEP 59 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~e 59 (132)
..++..+....+++ +++.||+.| ...+|+.+
T Consensus 84 ~~Ll~~~~~~Ar~~-gi~~lf~LTt~~~~~F~~ 115 (153)
T COG1246 84 ERLLERLLADAREL-GIKELFVLTTRSPEFFAE 115 (153)
T ss_pred HHHHHHHHHHHHHc-CCceeeeeecccHHHHHH
Confidence 56778888888888 999999999 89888876
No 85
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=64.19 E-value=20 Score=30.06 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=38.6
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~ 73 (132)
+..|+-....+.+-.++.+. +.|+|||.+++.. +.+.+++.+++.|++||.
T Consensus 107 r~~~~~~~~~~ala~~~~~~-g~kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~ 161 (347)
T TIGR03863 107 HTLPSRAMLADALAQYLAAK-RWRRILLIQGPLPADALYADAFRRSAKRFGAKIVA 161 (347)
T ss_pred EecCChHhHHHHHHHHHHHc-CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEE
Confidence 45667677777777777776 8999999995444 467788888888888875
No 86
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=64.04 E-value=21 Score=25.31 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEe
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~ 73 (132)
.+..+++...+++. ....|++++ .+.+-+++.-+.|...|++.|.
T Consensus 15 ~~~~~~l~~~l~~~-~~~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~ 60 (103)
T cd03413 15 NAVYAALEYVLREE-DPANVFVGTVEGYPGLDDVLAKLKKAGIKKVT 60 (103)
T ss_pred hhHHHHHHHHHHhc-CCCcEEEEEEcCCCCHHHHHHHHHHcCCCEEE
Confidence 45666677776664 337899999 8777777777667666765544
No 87
>PRK10586 putative oxidoreductase; Provisional
Probab=63.92 E-value=21 Score=30.45 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCccc---HHHHHHhhccCCcEEEeC---CCchHHHHH---HHhhcCeeeecceee
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNL---NEPLKEAFKRTEIRIVPS---DQSPHVDLA---ILSQANHFIGNCISS 98 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~---~~eLk~~l~~~~~~vv~l---~~~~~vDl~---Il~~A~~FIGNcvSS 98 (132)
+.++++|-..++++ +.+++.|-||...+ .+.+...|+..++.++.+ .....+|.. .-..+|..||=|-=|
T Consensus 19 ~ga~~~l~~~~~~~-g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~~~~d~iiavGGGs 97 (362)
T PRK10586 19 PGSIDHLHDFFTDE-QLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASGDDRQVVIGVGGGA 97 (362)
T ss_pred cCHHHHHHHHHHhc-CCCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhccCCCEEEEecCcH
Confidence 35678888899998 88899999987764 366788888777776655 224444432 223468888765433
No 88
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=63.90 E-value=27 Score=30.12 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=17.2
Q ss_pred HHHHHh-hcCeeeecceeecchhhhhhhhcCCCCC
Q psy9357 81 DLAILS-QANHFIGNCISSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 81 Dl~Il~-~A~~FIGNcvSSFTa~V~reR~~~G~ps 114 (132)
-.+|-. ++|.+|||. --.+--.| .|||.
T Consensus 336 ~~~i~~~~pDllig~~----~~~~pl~r--~GfP~ 364 (407)
T TIGR01279 336 LQRIRATRPDLVVTGL----GTANPLEA--QGFTT 364 (407)
T ss_pred HHHHHhcCCCEEecCc----cCCCcHhh--CCcce
Confidence 344555 899999997 12333333 67874
No 89
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=63.80 E-value=23 Score=29.55 Aligned_cols=71 Identities=13% Similarity=0.007 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEeC----CCchHHH----HHHHhhcCeeeeccee
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVPS----DQSPHVD----LAILSQANHFIGNCIS 97 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~l----~~~~~vD----l~Il~~A~~FIGNcvS 97 (132)
.+++++-+.++++ +.++++|-||..- +.+++++.|+..++.+..- |....|+ ++--.++|..||=|--
T Consensus 9 g~l~~l~~~l~~~-g~~~~livt~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 87 (337)
T cd08177 9 GALAALAAELERL-GASRALVLTTPSLATKLAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGG 87 (337)
T ss_pred CHHHHHHHHHHHc-CCCeEEEEcChHHHHHHHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4567777888888 8899999998653 5677888887655544432 3333344 4334688999876654
Q ss_pred ecc
Q psy9357 98 SFT 100 (132)
Q Consensus 98 SFT 100 (132)
|--
T Consensus 88 s~i 90 (337)
T cd08177 88 STI 90 (337)
T ss_pred HHH
Confidence 443
No 90
>PF13155 Toprim_2: Toprim-like
Probab=63.69 E-value=18 Score=24.08 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=34.3
Q ss_pred ccCCCHHHHH-HHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCC
Q psy9357 22 LCFPSVETVV-RQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTE 68 (132)
Q Consensus 22 ~C~Ps~~~I~-~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~ 68 (132)
.++++..... +++.+.+++. +.+.|+++.|++. ..+++++.|+..+
T Consensus 25 ~~l~~~~~~~~~~~~~~l~~~-~~~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 25 LSLAGGGTLSEKQQIKFLKEN-PYKKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred EEEECCchHHHHHHHHHHHhC-CCCcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 5677777663 5677777765 4589999999997 6788888887654
No 91
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=63.27 E-value=20 Score=29.89 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEE--eC---CCc----hHHHHHHHhhcCeeeeccee
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIV--PS---DQS----PHVDLAILSQANHFIGNCIS 97 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv--~l---~~~----~~vDl~Il~~A~~FIGNcvS 97 (132)
.++++.+.++++ + ++++|-||... +.+++.+.|+..++.+. .. |.. ..++++--.++|..||=|--
T Consensus 10 ~~~~l~~~~~~~-~-~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 87 (351)
T cd08170 10 ALDELGEYLARL-G-KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGG 87 (351)
T ss_pred HHHHHHHHHHHh-C-CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCc
Confidence 456777777776 5 89999998654 68888999987666542 22 333 44445556788999887665
Q ss_pred ecchhhhhhhhcCCCC
Q psy9357 98 SFTAFVKRHRDVKGLP 113 (132)
Q Consensus 98 SFTa~V~reR~~~G~p 113 (132)
|--.-.|---...+.|
T Consensus 88 S~iD~aK~ia~~~~~P 103 (351)
T cd08170 88 KTLDTAKAVADYLGAP 103 (351)
T ss_pred hhhHHHHHHHHHcCCC
Confidence 5444333332333443
No 92
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=61.86 E-value=47 Score=27.93 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecC-Ccc--cHHHHHHhhccC-CcEEEeC-CCchHHHHHHHhhcCeeeecceee
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATD-NNN--LNEPLKEAFKRT-EIRIVPS-DQSPHVDLAILSQANHFIGNCISS 98 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD-~~~--~~~eLk~~l~~~-~~~vv~l-~~~~~vDl~Il~~A~~FIGNcvSS 98 (132)
+.++++|..+.+.. + -+++|.|- ..+ ..+.|++.++.. ++.+..- ++++..+ .|+.||+++=++-|.
T Consensus 168 ~~l~~~l~~~~~~~-~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~--~La~ad~i~VT~DSv 239 (311)
T PF06258_consen 168 ERLLDQLAALAAAY-G-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLG--FLAAADAIVVTEDSV 239 (311)
T ss_pred HHHHHHHHHHHHhC-C-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHH--HHHhCCEEEEcCccH
Confidence 47888999999887 5 78998884 332 577788888542 3444544 6688886 789999999888773
No 93
>PF10879 DUF2674: Protein of unknown function (DUF2674); InterPro: IPR024246 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=61.85 E-value=10 Score=25.39 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=20.2
Q ss_pred cCCcccHHHHHHhhccCCcEEEeC-CC
Q psy9357 51 TDNNNLNEPLKEAFKRTEIRIVPS-DQ 76 (132)
Q Consensus 51 TD~~~~~~eLk~~l~~~~~~vv~l-~~ 76 (132)
|....-++.+|++..+ ||-+|+| |.
T Consensus 12 sehkadierikk~iee-gwaivklvpn 37 (67)
T PF10879_consen 12 SEHKADIERIKKSIEE-GWAIVKLVPN 37 (67)
T ss_pred hhhhhhHHHHHHHHhc-CeEEEEEccC
Confidence 3566679999999976 9999998 64
No 94
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=61.67 E-value=49 Score=29.22 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=62.9
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc---cHHHHHHhhccCCcEEEe---CC---C----chHHHHHHHh
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNN---LNEPLKEAFKRTEIRIVP---SD---Q----SPHVDLAILS 86 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~---~~~eLk~~l~~~~~~vv~---l~---~----~~~vDl~Il~ 86 (132)
-+..|+-...++.+.++++.. +.+.|.+.. |.+. .++.|++++++.|+.|+. .+ + .+++..+--.
T Consensus 165 fRt~psd~~q~~Ai~~l~~~f-~wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~ 243 (510)
T cd06364 165 LRTIPNDEHQATAMADIIEYF-RWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNS 243 (510)
T ss_pred eEcCCChHHHHHHHHHHHHHc-CCeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 456788888888888888888 899988775 4433 477888888888887763 22 2 2344444445
Q ss_pred hcCeeeecceeecchhhhhhhhcCCCCCCcc
Q psy9357 87 QANHFIGNCISSFTAFVKRHRDVKGLPSSFW 117 (132)
Q Consensus 87 ~A~~FIGNcvSSFTa~V~reR~~~G~ps~F~ 117 (132)
.||++|--+...=...+-++-...|.....|
T Consensus 244 ~a~vVvl~~~~~~~~~ll~qa~~~g~~~~iw 274 (510)
T cd06364 244 TAKVIVVFSSGPDLEPLIKEIVRRNITGKIW 274 (510)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhCCCCcEE
Confidence 7999887666555555544444445543344
No 95
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=61.58 E-value=36 Score=27.72 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=54.4
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC---C----C-chHHHHHHHh---
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS---D----Q-SPHVDLAILS--- 86 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~Il~--- 86 (132)
+..|+..+..+.+-+.+.+. +.++|.|.++.+.+ .+.+++++++.|.+|+.. + | .++|..+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~-g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~~~~ 181 (336)
T cd06339 103 YFGLSPEDEARRAAEYARSQ-GKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAIESYDPSPTDLSDAIRRLLGVDDS 181 (336)
T ss_pred EecCChHHHHHHHHHHHHhc-CccceEEEecCChHHHHHHHHHHHHHHHcCCceeeeEecCCCHHHHHHHHHHHhccccc
Confidence 34556667777777777776 89999999866654 444556666667777642 2 2 5666666665
Q ss_pred ------------------hcCeeeecceee-cchhhhhh
Q psy9357 87 ------------------QANHFIGNCISS-FTAFVKRH 106 (132)
Q Consensus 87 ------------------~A~~FIGNcvSS-FTa~V~re 106 (132)
.+|.++.-+.+. -..++++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~ 220 (336)
T cd06339 182 EQRIAQLKSLESEPRRRQDIDAIDAVALPDGEARLIKPQ 220 (336)
T ss_pred hhhhhhhhhcccCccccCCCCcEEEEecChhhhhhhcch
Confidence 778776555554 45556554
No 96
>TIGR01056 topB DNA topoisomerase III, bacteria and conjugative plasmid. This model describes topoisomerase III from bacteria and its equivalents encoded on plasmids. The gene is designated topB if found in the bacterial chromosome, traE on conjugative plasmid RP4, etc. These enzymes are involved in the control of DNA topology. DNA topoisomerase III belongs to the type I topoisomerases, which are ATP-independent.
Probab=61.33 E-value=12 Score=34.63 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
.|+.+.+++.|+++++.- ++..||+|||++.+ ..+|-++++
T Consensus 77 ~~~~~~~~~~ik~l~k~~-~ad~Ii~AtDpDREGE~I~~~i~~~l~ 121 (660)
T TIGR01056 77 SDKTKKQFNVIKRILKEN-KVDEVVIATDPDREGELIAREILDYLK 121 (660)
T ss_pred ccchHHHHHHHHHHhhhc-CCCEEEECCCCCcchHHHHHHHHHHhC
Confidence 466778888888888865 78999999999874 234556665
No 97
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=61.27 E-value=20 Score=29.04 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=31.5
Q ss_pred cEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHH
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAIL 85 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il 85 (132)
..+||.+|...+-+|..+.|++.+.+.|++ |..-+-|+.|.
T Consensus 147 d~~FVLgDH~g~~~eee~~L~~~~a~kiSlGP~~lhAdhcI~ 188 (199)
T PF04013_consen 147 DPVFVLGDHIGFTEEEEELLERLGAEKISLGPKSLHADHCIT 188 (199)
T ss_dssp SEEEEEE-TT-SHHHHHHHHHCTTSEEEES-SS---HHHHHH
T ss_pred CCeEEEeCCCCCCHHHHHHHHHccCceEEeCCHHHHHHHHHH
Confidence 799999999999999999999888899999 77666666653
No 98
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=60.93 E-value=25 Score=29.76 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhcc-CCcEEEeC------CC----chHHHHHH---HhhcCeee
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKR-TEIRIVPS------DQ----SPHVDLAI---LSQANHFI 92 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~-~~~~vv~l------~~----~~~vDl~I---l~~A~~FI 92 (132)
+.+++.+.++.+ +.++++|-||..- +.+++.+.|+. .+++++.+ |. ...++.+. ..|+|..|
T Consensus 10 ~l~~l~~~~~~~-~~~k~livtd~~v~~~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~II 88 (344)
T cd08169 10 VLESVESYTTRD-LFDQYFFISDSGVADLIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIV 88 (344)
T ss_pred hHHHHHHHHHhc-CCCeEEEEECccHHHHHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEE
Confidence 456666777777 7799999999653 67889999976 56655544 22 23344444 45588888
Q ss_pred ecc
Q psy9357 93 GNC 95 (132)
Q Consensus 93 GNc 95 (132)
|=|
T Consensus 89 aiG 91 (344)
T cd08169 89 AVG 91 (344)
T ss_pred EEC
Confidence 544
No 99
>PRK14824 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=60.86 E-value=10 Score=30.28 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.9
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+|++||.|.+-+.|++..|...+++|+.+
T Consensus 2 ~i~~aT~N~~K~~E~~~iL~~~~i~v~~~ 30 (201)
T PRK14824 2 KILLATTNEGKVREIKRLLSDLGIEVLSP 30 (201)
T ss_pred EEEEECCChHHHHHHHHHHhhcCCEEEEc
Confidence 48999999999999999998778888877
No 100
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=60.78 E-value=25 Score=29.41 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=37.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccH----HHHHHhhccCCcEEEe
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLN----EPLKEAFKRTEIRIVP 73 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~----~eLk~~l~~~~~~vv~ 73 (132)
+..|+-....+.+..+++.. +.++|.|.+|.+.+- +.++++|++.|++|+.
T Consensus 115 r~~~~~~~~~~a~~~~~~~~-~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~iv~ 169 (404)
T cd06370 115 RTVPPSIQVVKSVIALLKHF-NWNKFSVVYENDSKYSSVFETLKEEAELRNITISH 169 (404)
T ss_pred EcCCCHHHHHHHHHHHHHHC-CCcEEEEEEecCcccHHHHHHHHHHHHHcCCEEEE
Confidence 45666667777777888887 999999999766654 4455566566888874
No 101
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=60.61 E-value=71 Score=25.53 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=60.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhcC
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQAN 89 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A~ 89 (132)
+..|+..+..+.+-+.+.+. +.++|.+..+.+. ..+.+++++++.|++++.. .| .+++..+.-..+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d 192 (334)
T cd06327 114 HWAYDTYMLANGTAPALVKA-GGKKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGAD 192 (334)
T ss_pred EccCChHHHHHHHHHHHHHh-cCCeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCC
Confidence 45677777777777766665 6788888885444 4667777887778888753 12 6777777778888
Q ss_pred eeeecceee-cchhhhhhhhcCCC
Q psy9357 90 HFIGNCISS-FTAFVKRHRDVKGL 112 (132)
Q Consensus 90 ~FIGNcvSS-FTa~V~reR~~~G~ 112 (132)
.++-.+... ...+++..|+. |+
T Consensus 193 ~v~~~~~~~~~~~~~~~~~~~-g~ 215 (334)
T cd06327 193 VLVLANAGADTVNAIKQAAEF-GL 215 (334)
T ss_pred EEEEeccchhHHHHHHHHHHh-CC
Confidence 877665443 33455655544 55
No 102
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=60.60 E-value=24 Score=25.64 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
|+...+++.|++.++ +++.|++|||++.+ ..++.+.+.
T Consensus 57 ~~~~~~~~~ik~l~~---~~~eiiiAtD~drEGe~i~~~i~~~~~ 98 (123)
T cd03363 57 PGKKKVVKELKKLAK---KADEIYLATDPDREGEAIAWHLAEVLK 98 (123)
T ss_pred ccHHHHHHHHHHHHh---cCCEEEEcCCCCcchHHHHHHHHHHcC
Confidence 556677778887775 67899999998864 334555554
No 103
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=60.56 E-value=30 Score=28.91 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEE--EeC--C----CchHHHHHHH---hhcCeeeecc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRI--VPS--D----QSPHVDLAIL---SQANHFIGNC 95 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~v--v~l--~----~~~~vDl~Il---~~A~~FIGNc 95 (132)
.++++-+.++.+ +.++++|-||..- ..+++.+.|++.++++ +.. + ....++.++- .++|..||=|
T Consensus 10 ~l~~l~~~~~~~-~~~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~~~d~IIaIG 88 (348)
T cd08175 10 ALERLPEILKEF-GYKKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELERDTDLIIAVG 88 (348)
T ss_pred HHHHHHHHHHhc-CCCcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhccCCEEEEEC
Confidence 456777777777 7899999998653 3678889998777644 332 2 2333333321 1789988665
Q ss_pred eee
Q psy9357 96 ISS 98 (132)
Q Consensus 96 vSS 98 (132)
-=|
T Consensus 89 GGs 91 (348)
T cd08175 89 SGT 91 (348)
T ss_pred CcH
Confidence 444
No 104
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=60.53 E-value=69 Score=23.95 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHhCC-CcEEEEecCCccc----HHHHHHhhccCCcEEEeC----C---C-chHHHHHHHhhcCe
Q psy9357 24 FPSVETVVRQLKRVVREHGQ-IKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS----D---Q-SPHVDLAILSQANH 90 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~-lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l----~---~-~~~vDl~Il~~A~~ 90 (132)
.|+..+..+.+-+++... + .++|.+.++...+ .+-++++++..+++++.. . + ...+..+....++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (298)
T cd06268 115 APSDAQQAAALADYLAEK-GKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDA 193 (298)
T ss_pred ccCcHHHHHHHHHHHHHh-cCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCE
Confidence 566677777777777765 4 7788877754433 455666666667776542 1 2 45666666677788
Q ss_pred eeecce-eecchhhhhhhhcCCCCCCcccCC
Q psy9357 91 FIGNCI-SSFTAFVKRHRDVKGLPSSFWAFP 120 (132)
Q Consensus 91 FIGNcv-SSFTa~V~reR~~~G~ps~F~g~~ 120 (132)
+|..+. .....+++..+ ..|+.-.+.|++
T Consensus 194 vi~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 223 (298)
T cd06268 194 VFLAGYGGDAALFLKQAR-EAGLKVPIVGGD 223 (298)
T ss_pred EEEccccchHHHHHHHHH-HcCCCCcEEecC
Confidence 887665 33444454444 456665666665
No 105
>PRK09190 hypothetical protein; Provisional
Probab=59.72 E-value=27 Score=28.40 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=52.3
Q ss_pred CCCcEEEEecCCcc-cHHHHHHhhcc------CCcEEEeCCCchHHHHHHHhhcCeeeecceeecchhh----hhhhhcC
Q psy9357 42 GQIKYIFVATDNNN-LNEPLKEAFKR------TEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFV----KRHRDVK 110 (132)
Q Consensus 42 ~~lk~VfIaTD~~~-~~~eLk~~l~~------~~~~vv~l~~~~~vDl~Il~~A~~FIGNcvSSFTa~V----~reR~~~ 110 (132)
++++-|++|+|..+ -.+.|..+... .++.++..-+...+.++|...-..-||---.-|+..+ .|.+-..
T Consensus 126 gk~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~eLg~AlGr~~~~~vav~d~gfA~~l~~~~~rl~~~~ 205 (220)
T PRK09190 126 GEAAALIHASDGAADGKRKLDQARRALVHETGREIPVIGLFTAAELGLAFGRENVIHAALLAGGAAERVVKRAQRLAGYR 205 (220)
T ss_pred CCceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEEecCHHHHHHHhCCCceeEEEEcChHHHHHHHHHHHHHHhhh
Confidence 37899999999765 67777776655 5677877766788999999877788887777776554 4444455
Q ss_pred CCC
Q psy9357 111 GLP 113 (132)
Q Consensus 111 G~p 113 (132)
|.+
T Consensus 206 ~~~ 208 (220)
T PRK09190 206 GGD 208 (220)
T ss_pred cCC
Confidence 543
No 106
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=59.56 E-value=58 Score=27.21 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=47.8
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEe---CC-C----chHHHHHHHhh-c
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVP---SD-Q----SPHVDLAILSQ-A 88 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~---l~-~----~~~vDl~Il~~-A 88 (132)
++.|+...+ +..+++.+ +-++|.|.+|.+.+ .+.|.++|++.+++|+. .+ + .+++..+--.. +
T Consensus 114 r~~~~~~~~---~~~~~~~~-~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~ 189 (382)
T cd06371 114 RTLPSPSRV---LFTVLRYF-RWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPDEKGAREALKKVRSADRV 189 (382)
T ss_pred ecCCCcHHH---HHHHHHHC-CCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecCCHHHHHHHHHHHhcCCCc
Confidence 455665433 44567777 88999999976653 78888899887877664 22 2 45555554444 7
Q ss_pred Ceeeeccee
Q psy9357 89 NHFIGNCIS 97 (132)
Q Consensus 89 ~~FIGNcvS 97 (132)
|++|...-+
T Consensus 190 ~viv~~~~~ 198 (382)
T cd06371 190 RVVIMCMHS 198 (382)
T ss_pred EEEEEEeec
Confidence 999974444
No 107
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=59.06 E-value=55 Score=26.86 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhcCeeeecce
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A~~FIGNcv 96 (132)
+....++.+.++. +.|+|++..+... +.+-++++|++.|.+++.. +| .+++..+....+|..+.-..
T Consensus 120 ~~~~~~~~~~~~~-g~k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~pDav~~~~~ 198 (359)
T TIGR03407 120 QIIPAVDYLLSKK-GAKRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNTLN 198 (359)
T ss_pred HHHHHHHHHHhcc-CCceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHhCCCEEEEecc
Confidence 3333334444444 8899999884332 4555788888888887642 23 78899999999998655444
Q ss_pred eec-chhhhhhhhc
Q psy9357 97 SSF-TAFVKRHRDV 109 (132)
Q Consensus 97 SSF-Ta~V~reR~~ 109 (132)
+.- ..+++..|+.
T Consensus 199 ~~~~~~~~~~~~~~ 212 (359)
T TIGR03407 199 GDSNVAFFKQLKNA 212 (359)
T ss_pred CCCHHHHHHHHHHc
Confidence 444 4567766665
No 108
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=58.89 E-value=56 Score=27.41 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=55.8
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEe---CCC--------chHHHHHHHh
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVP---SDQ--------SPHVDLAILS 86 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~---l~~--------~~~vDl~Il~ 86 (132)
+..|+-....+.+-+.++.+ +.++|.|..+++.+ .+.++++|++.|++++. .+. .++|-.+-..
T Consensus 155 r~~~~~~~~~~al~~~l~~~-~~k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~ 233 (410)
T cd06363 155 RTVPSDKDQIEAMVQLLQEF-GWNWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQT 233 (410)
T ss_pred EecCCcHHHHHHHHHHHHHC-CCcEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcC
Confidence 34577777777788888877 89999999865553 67778888877887763 221 3566666667
Q ss_pred hcCeeeecceeecchhh
Q psy9357 87 QANHFIGNCISSFTAFV 103 (132)
Q Consensus 87 ~A~~FIGNcvSSFTa~V 103 (132)
.+|..|-.+...=...+
T Consensus 234 ~~dvIil~~~~~~~~~i 250 (410)
T cd06363 234 KVNVIVVFASRQPAEAF 250 (410)
T ss_pred CCeEEEEEcChHHHHHH
Confidence 78888776655554444
No 109
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=58.82 E-value=31 Score=32.42 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CC------chHHHHHHHhhcCeeeecceeec
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQ------SPHVDLAILSQANHFIGNCISSF 99 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~------~~~vDl~Il~~A~~FIGNcvSSF 99 (132)
+++++..|+..+++ + ..|+|-|=-..|-++|..+|.+.|++|--+ .+ +-+|--.=+|.-|+.||
T Consensus 432 vdDL~~EI~~r~~~--~-eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVG------ 502 (663)
T COG0556 432 VDDLLSEIRKRVAK--N-ERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG------ 502 (663)
T ss_pred HHHHHHHHHHHHhc--C-CeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEe------
Confidence 45666666666654 3 889999988889999999999999999877 55 66777777889999999
Q ss_pred chhhhhhhhcCCCC
Q psy9357 100 TAFVKRHRDVKGLP 113 (132)
Q Consensus 100 Ta~V~reR~~~G~p 113 (132)
|--.|+-+.+|
T Consensus 503 ---INLLREGLDiP 513 (663)
T COG0556 503 ---INLLREGLDLP 513 (663)
T ss_pred ---ehhhhccCCCc
Confidence 66788888888
No 110
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=58.73 E-value=91 Score=25.13 Aligned_cols=93 Identities=19% Similarity=0.292 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhcc--CCcEEEeC---C-----C-chHHHHHHHhhcC
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKR--TEIRIVPS---D-----Q-SPHVDLAILSQAN 89 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~--~~~~vv~l---~-----~-~~~vDl~Il~~A~ 89 (132)
|+..+....+-.++....+.|+|.|..+... ..+.++++|++ .|++|+.- + | .++|..+.-..+|
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d 203 (342)
T cd06329 124 ANTDMKMEALASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGAD 203 (342)
T ss_pred CChHHHHHHHHHHHHhcccCceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCC
Confidence 5666667777777766524899999985554 45678888887 78888742 2 2 5778887778888
Q ss_pred eeeecceeecc-hhhhhhhhcCCCCCCccc
Q psy9357 90 HFIGNCISSFT-AFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 90 ~FIGNcvSSFT-a~V~reR~~~G~ps~F~g 118 (132)
.++-...+.-. .+++..|. .|+...+.+
T Consensus 204 ~v~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 232 (342)
T cd06329 204 TVITGNWGNDLLLLVKQAAD-AGLKLPFYT 232 (342)
T ss_pred EEEEcccCchHHHHHHHHHH-cCCCceEEe
Confidence 87765555333 34444443 355443433
No 111
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=58.46 E-value=29 Score=28.99 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEeC---CC----chHHHHHHHhhcCeeeecceeec
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVPS---DQ----SPHVDLAILSQANHFIGNCISSF 99 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~l---~~----~~~vDl~Il~~A~~FIGNcvSSF 99 (132)
.++++...++++ + ++++|-||... +.+.|++.|+..++.+..+ |. ...++.+.-.++|..||=|--|-
T Consensus 11 ~l~~l~~~~~~~-~-~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~ 88 (347)
T cd08172 11 ALDELGELLKRF-G-KRPLIVTGPRSWAAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGGGKV 88 (347)
T ss_pred HHHHHHHHHHHh-C-CeEEEEECHHHHHHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 456677777776 4 88999998654 5777888886555554443 44 34555555667898887655443
No 112
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=58.33 E-value=31 Score=26.98 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=41.7
Q ss_pred CCcEEEEecCCc---ccHHHHHHhhccC-CcEEEeC--CCchHHHHHHHhhcCeeeecceeecchhhhhhh
Q psy9357 43 QIKYIFVATDNN---NLNEPLKEAFKRT-EIRIVPS--DQSPHVDLAILSQANHFIGNCISSFTAFVKRHR 107 (132)
Q Consensus 43 ~lk~VfIaTD~~---~~~~eLk~~l~~~-~~~vv~l--~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR 107 (132)
+.+-+||.|.+. +++...+++|.+. +.+++.+ .+ ..-+...+..||..+=.+- ++...++..|
T Consensus 31 ~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG-~~~~~~~~l~ 99 (212)
T cd03146 31 RPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGG-NTFNLLAQWR 99 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCc-hHHHHHHHHH
Confidence 689999999543 4788899999999 8877765 22 1222456678887776663 4444443333
No 113
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=57.96 E-value=81 Score=25.75 Aligned_cols=82 Identities=15% Similarity=0.315 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHHH-HHHhhcCeeeecceeecchhhhh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDL-AILSQANHFIGNCISSFTAFVKR 105 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vDl-~Il~~A~~FIGNcvSSFTa~V~r 105 (132)
++.+++.++++.++.++++-|++..++....+++.+.+... -+|+-+......|+ .+++.||.||++. +-+..
T Consensus 214 ~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~ 287 (365)
T TIGR00236 214 LENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDS-KRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQE 287 (365)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCC-CCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHH
Confidence 45666666666555435664444333333344455544321 12322233334444 5889999999984 33457
Q ss_pred hhhcCCCCC
Q psy9357 106 HRDVKGLPS 114 (132)
Q Consensus 106 eR~~~G~ps 114 (132)
|=...|.|.
T Consensus 288 EA~a~g~Pv 296 (365)
T TIGR00236 288 EAPSLGKPV 296 (365)
T ss_pred HHHHcCCCE
Confidence 778888883
No 114
>PRK14821 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=57.82 E-value=13 Score=29.11 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=25.6
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+|++||.|.+-+.|++..|...++.++.+
T Consensus 2 ~i~~aT~N~~K~~E~~~il~~~~i~v~~~ 30 (184)
T PRK14821 2 KIYFATGNKGKVEEAKIILKPLGIEVEQI 30 (184)
T ss_pred EEEEECCChhHHHHHHHHHhhcCcEEEEC
Confidence 48899999999999999998777888776
No 115
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=57.78 E-value=13 Score=29.77 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=26.6
Q ss_pred cEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+++++||-|.+.+.|++..|...+++|..+
T Consensus 2 ~ki~~AT~N~~K~~E~~~il~~~~~ei~~~ 31 (194)
T COG0127 2 MKIVLATGNKGKLRELKSILAPGGIEIESL 31 (194)
T ss_pred cEEEEEcCChHHHHHHHHHhcccCceEEEc
Confidence 579999999999999999998755888876
No 116
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=57.27 E-value=45 Score=23.33 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=27.5
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeee
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFI 92 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FI 92 (132)
....+.|.|+-..+.+-++.+- ..|++|+-+-........+...||+||
T Consensus 95 ~~d~ivLvSgD~Df~~~v~~l~-~~g~~V~v~~~~~~~s~~L~~~ad~f~ 143 (146)
T PF01936_consen 95 PPDTIVLVSGDSDFAPLVRKLR-ERGKRVIVVGAEDSASEALRSAADEFI 143 (146)
T ss_dssp G-SEEEEE---GGGHHHHHHHH-HH--EEEEEE-GGGS-HHHHHHSSEEE
T ss_pred CCCEEEEEECcHHHHHHHHHHH-HcCCEEEEEEeCCCCCHHHHHhcCEEE
Confidence 4588888883344555555444 447766655214567777888999987
No 117
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=57.14 E-value=82 Score=25.43 Aligned_cols=80 Identities=11% Similarity=0.133 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhcCeee-eccee
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQANHFI-GNCIS 97 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A~~FI-GNcvS 97 (132)
...+-+.+.+. +.++|+|...... +.+.++++|++.|++++.. .| .++|..+....+|..+ +..-.
T Consensus 120 ~~~~~~~~~~~-~~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~ 198 (334)
T cd06356 120 FSTLVPYMMEK-YGKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAKPDFVMSILVGA 198 (334)
T ss_pred HHHHHHHHHHc-cCCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcCCCEEEEeccCC
Confidence 34333433432 2367888774333 4556778888888888742 22 7899999999999555 34444
Q ss_pred ecchhhhhhhhcCCC
Q psy9357 98 SFTAFVKRHRDVKGL 112 (132)
Q Consensus 98 SFTa~V~reR~~~G~ 112 (132)
....+++..|+. |+
T Consensus 199 ~~~~~~~~~~~~-G~ 212 (334)
T cd06356 199 NHLSFYRQWAAA-GL 212 (334)
T ss_pred cHHHHHHHHHHc-CC
Confidence 555677766644 44
No 118
>KOG2931|consensus
Probab=56.86 E-value=17 Score=31.55 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=50.3
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccC----Cc------------------EEEe--C-CC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRT----EI------------------RIVP--S-DQ 76 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~----~~------------------~vv~--l-~~ 76 (132)
-+||.++++++|-.++... ++++|-=.- .+-.++=- +=|++.. |. |+.+ | .+
T Consensus 101 ~yPsmd~LAd~l~~VL~~f-~lk~vIg~GvGAGAyIL~-rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~K~~s~~l~~~ 178 (326)
T KOG2931|consen 101 PYPSMDDLADMLPEVLDHF-GLKSVIGMGVGAGAYILA-RFALNHPERVLGLVLINCDPCAKGWIEWAYNKVSSNLLYYY 178 (326)
T ss_pred CCCCHHHHHHHHHHHHHhc-CcceEEEecccccHHHHH-HHHhcChhheeEEEEEecCCCCchHHHHHHHHHHHHHHHhh
Confidence 4899999999999999998 888875332 33332210 1111110 11 1111 1 11
Q ss_pred ---chHHHHHHHhhcCeeeecceeecchhhhhhhhcCCC
Q psy9357 77 ---SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL 112 (132)
Q Consensus 77 ---~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ 112 (132)
...+|+.. +.||=++-.+.=+--|++.|...+.
T Consensus 179 Gmt~~~~d~ll---~H~Fg~e~~~~~~diVq~Yr~~l~~ 214 (326)
T KOG2931|consen 179 GMTQGVKDYLL---AHHFGKEELGNNSDIVQEYRQHLGE 214 (326)
T ss_pred chhhhHHHHHH---HHHhccccccccHHHHHHHHHHHHh
Confidence 34455543 3578888888877778888877663
No 119
>PF01512 Complex1_51K: Respiratory-chain NADH dehydrogenase 51 Kd subunit; InterPro: IPR011538 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Thie entry represents the 51 kDa subunit from NADH:ubiquinone oxidoreductase []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 51 kDa (in mammals), which is the second largest subunit of complex I and is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind to NAD, FMN, and a 2Fe-2S cluster. The 51 kDa subunit and the bacterial hydrogenase alpha subunit contain three regions of sequence similarities. The first one most probably corresponds to the NAD-binding site, the second to the FMN-binding site, and the third one, which contains three cysteines, to the iron-sulphur binding region.; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0051539 4 iron, 4 sulfur cluster binding; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=56.82 E-value=23 Score=26.49 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-C-CcccHHHHHHhhccCC------cEEEeC
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-D-NNNLNEPLKEAFKRTE------IRIVPS 74 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D-~~~~~~eLk~~l~~~~------~~vv~l 74 (132)
..++|++-++-+.+.. +++.++|+- + ...+++.|+++++... ++|+..
T Consensus 51 ~~~~il~G~~i~~~a~-ga~~~iI~i~~~~~~~~~~l~~al~~~~~~~~~~i~v~~~ 106 (151)
T PF01512_consen 51 HPHEILEGIKIAAKAL-GAKKIIIAIEENKPEAIEALREALAEARNAGLFDIEVVAV 106 (151)
T ss_dssp -HHHHHHHHHHHHHHT-TESEEEEEE-TT-HHHHHHHHHHHHHHHHTTSBEEEEEE-
T ss_pred hHHHHHHHHHHHHHhc-CCCEEEEEEccCcHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4577888888888888 999999999 3 3468999999998642 777776
No 120
>KOG3916|consensus
Probab=56.45 E-value=5.8 Score=34.84 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=31.4
Q ss_pred chHHH--HHHHhhcCeeeecceeecchhhhhhhhcCCCCCCcccCCC
Q psy9357 77 SPHVD--LAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFPI 121 (132)
Q Consensus 77 ~~~vD--l~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps~F~g~~~ 121 (132)
..++| .+.|-...+|= |||-.| ....|.++|||..|||+..
T Consensus 245 sva~dk~gy~LPY~~~FG--GVsalt--~~qf~kINGFsN~fWGWGG 287 (372)
T KOG3916|consen 245 SVALDKFGYRLPYKEYFG--GVSALT--KEQFRKINGFSNAFWGWGG 287 (372)
T ss_pred hhhhhhccccccchhhhC--chhhcc--HHHHHHhcCCCchhcccCC
Confidence 55666 35677778875 477776 5677999999999999964
No 121
>PRK14822 nucleoside-triphosphatase; Provisional
Probab=56.42 E-value=14 Score=29.47 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.6
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+|++||.|.+-+.|+++.|...+++++.+
T Consensus 3 ~i~~aT~N~~K~~E~~~iL~~~~~~i~~~ 31 (200)
T PRK14822 3 EIVIATKNKGKVREFKEIFEKFDIEVKSL 31 (200)
T ss_pred eEEEECCCHHHHHHHHHHHhhcCcEEEEc
Confidence 58999999999999999998767887766
No 122
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=56.23 E-value=97 Score=24.30 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHH-HHhCCCcEEEEecCCc-cc----HHHHHHhhccCCcEEEeC---C----C-chHHHHHHHhhcCe
Q psy9357 25 PSVETVVRQLKRVV-REHGQIKYIFVATDNN-NL----NEPLKEAFKRTEIRIVPS---D----Q-SPHVDLAILSQANH 90 (132)
Q Consensus 25 Ps~~~I~~~ik~~~-~~~~~lk~VfIaTD~~-~~----~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~Il~~A~~ 90 (132)
|+-......+..++ +.+ +.++|.|..+.. .+ .+.++++|++.|++++.. + + .+.+-.+.-..+|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~-~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~ 194 (334)
T cd06347 116 FIDPFQGTVMAKFATENL-KAKKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDV 194 (334)
T ss_pred CCcHHHHHHHHHHHHHhc-CCcEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCE
Confidence 43333344444444 455 678888877432 33 456677777778877642 2 2 45666666678888
Q ss_pred eeecceeecchhhhhhhhcCCCCC
Q psy9357 91 FIGNCISSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 91 FIGNcvSSFTa~V~reR~~~G~ps 114 (132)
+|.-+...-...+-++-...|++.
T Consensus 195 i~~~~~~~~~~~~~~~~~~~g~~~ 218 (334)
T cd06347 195 IFLPGYYTEVGLIAKQARELGIKV 218 (334)
T ss_pred EEEcCchhhHHHHHHHHHHcCCCC
Confidence 888776665554444434456543
No 123
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=56.21 E-value=67 Score=26.97 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCC-----cEEEeCC---C-chHHHHHHHhhcCeeeecc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTE-----IRIVPSD---Q-SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~-----~~vv~l~---~-~~~vDl~Il~~A~~FIGNc 95 (132)
|+.....+.|..+++.+ +=++|-+..|.++.+..|+++|+... +++...+ + .+++..+=-..+++||=.|
T Consensus 116 P~~~~~~~Ai~dli~~~-~W~~v~~iYe~d~~l~~L~~~l~~~~~~~~~i~~~~~~~~~d~~~~L~~ik~~~~~~iVv~~ 194 (333)
T cd06394 116 PSNEDISVAVAGILNSF-NYPTASLICAKAECLLRLEELLRQFLISKETLSVRMLDDSRDPTPLLKEIRDDKTATIIIDA 194 (333)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEEeCcHHHHHHHHHHHhhcccCCceeeEEccCcccHHHHHHHHHhcCCCEEEEEC
Confidence 89899999999999998 89999999988888999999987532 2232321 2 5677777778999999999
Q ss_pred eeecchhhhhhhhcCCCCCCc
Q psy9357 96 ISSFTAFVKRHRDVKGLPSSF 116 (132)
Q Consensus 96 vSSFTa~V~reR~~~G~ps~F 116 (132)
-+.-.+.|-++=...|.-+.+
T Consensus 195 ~~~~a~~il~qa~~lGm~~~~ 215 (333)
T cd06394 195 NASMSHTILLKASELGMTSAF 215 (333)
T ss_pred ChHHHHHHHHHHHHcCCCCCc
Confidence 888887777665555765433
No 124
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=56.14 E-value=39 Score=27.80 Aligned_cols=91 Identities=7% Similarity=0.157 Sum_probs=50.0
Q ss_pred ccccCCCH--HHHHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCc-EEEeC-CC-chHHHHHHHhhcCeeee
Q psy9357 20 EELCFPSV--ETVVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEI-RIVPS-DQ-SPHVDLAILSQANHFIG 93 (132)
Q Consensus 20 ~~~C~Ps~--~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~-~vv~l-~~-~~~vDl~Il~~A~~FIG 93 (132)
..+++|.. .++++.+. +. +.+-|.+.+..+. ..+++.+.+..... .++.+ .. .-.-=.+++++|+.|||
T Consensus 193 ~~K~Wp~e~~a~l~~~l~----~~-~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~ 267 (348)
T PRK10916 193 PAKRWPHYHYAELAQQLI----DE-GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVT 267 (348)
T ss_pred cccCCCHHHHHHHHHHHH----HC-CCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEe
Confidence 56788843 55555443 33 6666665553332 35556555543211 34445 22 33334578999999999
Q ss_pred cceeecchhhhhhhhcCCCCC-CcccCC
Q psy9357 94 NCISSFTAFVKRHRDVKGLPS-SFWAFP 120 (132)
Q Consensus 94 NcvSSFTa~V~reR~~~G~ps-~F~g~~ 120 (132)
|- |+-.. .=-+.|.|+ .+||-.
T Consensus 268 nD----TGp~H-lAaA~g~P~valfGpt 290 (348)
T PRK10916 268 ND----SGLMH-VAAALNRPLVALYGPS 290 (348)
T ss_pred cC----ChHHH-HHHHhCCCEEEEECCC
Confidence 96 22222 225667775 666643
No 125
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=55.54 E-value=76 Score=24.67 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=58.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc--EEE---eC-CC----chHHHHHHHhhc
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI--RIV---PS-DQ----SPHVDLAILSQA 88 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~--~vv---~l-~~----~~~vDl~Il~~A 88 (132)
|--...|+.....+.+-++++.+ +-++|.|.+|.+++...|+..++..+. .++ .+ +. .+.+..+-...+
T Consensus 108 ~~~~~~p~~~~~~~a~~~~l~~~-~w~~v~iiy~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~l~~~~~ 186 (328)
T cd06351 108 TTLQLYPSLEDLADALLDLLEYY-NWTKFAIIYDSDEGLSRLQELLDESGIKGIQVTVRRLDLDDDNYRQLLKELKRSES 186 (328)
T ss_pred ceEEecCCHHHHHHHHHHHHHHc-CCcEEEEEEeCchHHHHHHHHHHhhcccCceEEEEEecCCchhHHHHHHHHhhccc
Confidence 44567899999999999999988 899999999888888888888876432 222 23 22 455555566677
Q ss_pred -Ceeeecceeecchhh
Q psy9357 89 -NHFIGNCISSFTAFV 103 (132)
Q Consensus 89 -~~FIGNcvSSFTa~V 103 (132)
+++|.-+-+.-...+
T Consensus 187 ~~vil~~~~~~~~~~~ 202 (328)
T cd06351 187 RRIILDCSSEEEAKEI 202 (328)
T ss_pred ceEEEECCcHHHHHHH
Confidence 777765542333333
No 126
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=55.41 E-value=20 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=17.0
Q ss_pred CcEEEEecCCcc----cHHHHHHhhccCCcEE
Q psy9357 44 IKYIFVATDNNN----LNEPLKEAFKRTEIRI 71 (132)
Q Consensus 44 lk~VfIaTD~~~----~~~eLk~~l~~~~~~v 71 (132)
.+.|+|++|++. ...+|.+.|...+++|
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v 77 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRV 77 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhcccc
Confidence 699999999987 4666777676555544
No 127
>PRK00120 dITP/XTP pyrophosphatase; Reviewed
Probab=55.19 E-value=14 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.5
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.+++||.|.+-+.|+++.|...+++++.+
T Consensus 2 ~i~~aT~N~~K~~E~~~il~~~~~~i~~~ 30 (196)
T PRK00120 2 KIVLASHNAGKLRELKALLAPFGIEVVSQ 30 (196)
T ss_pred EEEEEcCCHHHHHHHHHHHhhcCCEEEeh
Confidence 48999999999999999998778887765
No 128
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=55.11 E-value=43 Score=28.64 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=38.4
Q ss_pred CCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeecce
Q psy9357 43 QIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 43 ~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGNcv 96 (132)
+.++++|-||.. .+.+++.+.|+..++.+..+ |. ...++++--.++|.+||=|-
T Consensus 20 ~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (398)
T cd08178 20 GKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG 87 (398)
T ss_pred CCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 568999999853 37889999998877765443 22 34555656668999987654
No 129
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=54.99 E-value=38 Score=23.81 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC-CCchHHHHHHH
Q psy9357 34 LKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS-DQSPHVDLAIL 85 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il 85 (132)
+.+.+++. +++-|+||+|.++ ..+.+..+=+..++.++.+ .....+=.++.
T Consensus 24 v~kai~~g-kaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~G 76 (99)
T PRK01018 24 TIKAIKLG-KAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCG 76 (99)
T ss_pred HHHHHHcC-CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhC
Confidence 44444454 8999999999875 3555555555567877665 44555555544
No 130
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=54.97 E-value=22 Score=35.36 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccH----HHHHHhhc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLN----EPLKEAFK 65 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~----~eLk~~l~ 65 (132)
++.+.+++.|++..+ ++..||||||++.+= -++.+.+.
T Consensus 704 ~~k~~~~~~lr~l~~---~~d~ViiATDpDrEGE~Ia~~i~~~l~ 745 (1171)
T TIGR01054 704 EDSKSIIEILRELAH---EVDEVFIGTDPDTEGEKIGWDLALLLS 745 (1171)
T ss_pred ccHHHHHHHHHHHHh---cCCEEEECCCCCccHHHHHHHHHHHhc
Confidence 788888888888885 679999999999742 24666664
No 131
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=54.88 E-value=21 Score=29.32 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCccc---HHHHHHhhccCCcEEEeC------CCchHHHHHH----HhhcCeeeecc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNNL---NEPLKEAFKRTEIRIVPS------DQSPHVDLAI----LSQANHFIGNC 95 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~~---~~eLk~~l~~~~~~vv~l------~~~~~vDl~I----l~~A~~FIGNc 95 (132)
.++.++-.+++++ +.++++|-||.+.| -+++++.|+..++++..+ ++...++.+. -..+|..||=|
T Consensus 5 ga~~~l~~~l~~~-~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vG 83 (250)
T PF13685_consen 5 GALDKLPEILSEL-GLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVG 83 (250)
T ss_dssp S-GGGHHHHHGGG-T-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEE
T ss_pred cHHHHHHHHHHhc-CCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeC
Confidence 3567788889998 88999999998875 578999998877666432 3333332222 34677888766
Q ss_pred eeecchhhhh
Q psy9357 96 ISSFTAFVKR 105 (132)
Q Consensus 96 vSSFTa~V~r 105 (132)
-=+-.-..|.
T Consensus 84 gG~i~D~~K~ 93 (250)
T PF13685_consen 84 GGTIIDIAKY 93 (250)
T ss_dssp SHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 4444444433
No 132
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=54.73 E-value=30 Score=26.34 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=33.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhc
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFK 65 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~ 65 (132)
..+|+-+.=+++.+++++.- |++.+|.-| -..+-++||+++|+
T Consensus 99 ~Dl~~~~~~i~~a~~~L~~a-G~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 99 IDLPSDDANIERAKKWLKNA-GVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ccCccchhhHHHHHHHHHHc-CCCCeEEEECCCCcCHHHHHHHHh
Confidence 45664455566788888887 899998777 56677999999986
No 133
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=54.63 E-value=39 Score=25.71 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-CCcc--cHHHHHHhhccCCcEEEe--C-----CCchHHHH---HHHhhcCeee
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-DNNN--LNEPLKEAFKRTEIRIVP--S-----DQSPHVDL---AILSQANHFI 92 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~--~~~eLk~~l~~~~~~vv~--l-----~~~~~vDl---~Il~~A~~FI 92 (132)
...+++++|++.+.++ ++|||.. ++-. .+.+|++.|+...+.|.+ + ...+ -|. -+-.-++++-
T Consensus 2 ~K~~~v~~l~e~l~~y---~~v~iv~~~gl~~~ql~~iR~~lr~~~~~v~KNtl~~~Al~~~~-~~~~~~~~~~L~~~l~ 77 (163)
T cd05796 2 LKQKLVENIREAVDKY---KYIYVFSVDNMRNNKLKDIRQEWKDSRFFFGKNKVMQVALGRTP-EDEYKPNLHKLSKYLK 77 (163)
T ss_pred hHHHHHHHHHHHHHhC---CEEEEEEecCCCHHHHHHHHHHhcCCEEEEEchHHHHHHHhhCc-cccccccHHHHHHHhC
Confidence 3567889999999987 8999988 6543 799999999864334443 1 1000 000 0334556788
Q ss_pred ecceeecch
Q psy9357 93 GNCISSFTA 101 (132)
Q Consensus 93 GNcvSSFTa 101 (132)
||+.=-||.
T Consensus 78 G~~~lift~ 86 (163)
T cd05796 78 GQVGLLFTN 86 (163)
T ss_pred CCEEEEEEC
Confidence 888666663
No 134
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=54.51 E-value=25 Score=25.07 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCc--ccHHHHHHhhccCCcEEE
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNN--NLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~--~~~~eLk~~l~~~~~~vv 72 (132)
.+++.+.+++. +++.||||-+.. +.+.++-+.+++.+++|.
T Consensus 130 ~~~l~~~~~~~-~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~ 172 (175)
T PF13727_consen 130 LDDLPELVREH-DIDEVIIALPWSEEEQIKRIIEELENHGVRVR 172 (175)
T ss_dssp GGGHHHHHHHH-T--EEEE--TTS-HHHHHHHHHHHHTTT-EEE
T ss_pred HHHHHHHHHhC-CCCEEEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence 35566667777 899999997443 357777777777777664
No 135
>PRK07220 DNA topoisomerase I; Validated
Probab=54.23 E-value=20 Score=33.76 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCccc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNL 56 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~ 56 (132)
|+.+.+++.|+++.+ ++..||||||.+.+
T Consensus 82 ~~~~~~~~~lk~l~k---~ad~viiAtD~DRE 110 (740)
T PRK07220 82 PTQKKIVTALKKLGK---EADRVTIATDYDRE 110 (740)
T ss_pred CCHHHHHHHHHHHHh---cCCEEEECCCCCcc
Confidence 566777888888775 67999999999974
No 136
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=53.85 E-value=32 Score=27.24 Aligned_cols=47 Identities=11% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc---CCcEEEeC
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR---TEIRIVPS 74 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~---~~~~vv~l 74 (132)
-+.+.|++++++++++= =+.|+|++.. +.+++|+..|++ -|++|.-+
T Consensus 6 kg~~~I~~~i~elI~~A--e~eI~is~~~-~~l~~l~~~L~~a~~rGV~V~li 55 (233)
T PF11495_consen 6 KGRETILERIRELIENA--ESEIYISIPP-EFLEELRDELEEAVDRGVKVKLI 55 (233)
T ss_dssp SSHHHHHHHHHHHHHC---SSEEEEEE-G-GGHHHHHHHHHHHHHTT-EEEEE
T ss_pred eCHHHHHHHHHHHHHHh--heEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEE
Confidence 46789999999999973 4789998864 345555555543 27766643
No 137
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=53.66 E-value=47 Score=27.96 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCC-cEEEEecCCcc---cHHHHHHhhccCC-cEEEeC--CC----chHHHHHHHhhcCeeeecc
Q psy9357 29 TVVRQLKRVVREHGQI-KYIFVATDNNN---LNEPLKEAFKRTE-IRIVPS--DQ----SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~l-k~VfIaTD~~~---~~~eLk~~l~~~~-~~vv~l--~~----~~~vDl~Il~~A~~FIGNc 95 (132)
.+.+++.+.++++ +. ++++|-||... +.++|++.|+..+ +.++.. |. ...++++.-.++|..||=|
T Consensus 19 g~l~~l~~~l~~~-~~~~~~livtd~~~~~~~~~~l~~~l~~~~~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiG 95 (350)
T PRK00843 19 GVLDDIGDVCSDL-KLTGRALIVTGPTTKKIAGDRVEENLEDAGDVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVG 95 (350)
T ss_pred CHHHHHHHHHHHh-CCCCeEEEEECCcHHHHHHHHHHHHHHhcCCeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeC
Confidence 4567777788877 65 89999998765 4678888887654 222222 33 3455565566788888433
No 138
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=53.62 E-value=31 Score=21.81 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=14.4
Q ss_pred cEEEEecCCccc----HHHHHHhhc
Q psy9357 45 KYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 45 k~VfIaTD~~~~----~~eLk~~l~ 65 (132)
+.|+|++|++.. ..++.+.|+
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~ 72 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLK 72 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhh
Confidence 789999998874 334555443
No 139
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=52.82 E-value=45 Score=27.91 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcE--EEeC---CC----chHHHHHHHhhcCeeeeccee
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIR--IVPS---DQ----SPHVDLAILSQANHFIGNCIS 97 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~--vv~l---~~----~~~vDl~Il~~A~~FIGNcvS 97 (132)
.++++.+.++.+ + ++++|-||... +.+++++.|+..++. +..+ |. ...++++--.++|..||=|-=
T Consensus 10 ~~~~l~~~~~~~-g-~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 87 (349)
T cd08550 10 AIKEIAAILSTF-G-SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGG 87 (349)
T ss_pred HHHHHHHHHHHc-C-CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 566777777777 7 78899998654 578888899876653 3334 23 234444445678988865543
Q ss_pred e
Q psy9357 98 S 98 (132)
Q Consensus 98 S 98 (132)
|
T Consensus 88 s 88 (349)
T cd08550 88 K 88 (349)
T ss_pred H
Confidence 3
No 140
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=52.60 E-value=44 Score=28.54 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcE--EEeC------CC----chHHHHHHHhhcC---ee
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIR--IVPS------DQ----SPHVDLAILSQAN---HF 91 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~--vv~l------~~----~~~vDl~Il~~A~---~F 91 (132)
+++++.+.++++ +.++++|-||..- +.++|.+.|+..+++ ++.+ |. ...++.+.-..+| ..
T Consensus 10 ~l~~l~~~l~~~-g~~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~I 88 (355)
T cd08197 10 ILDSVLGYLPEL-NADKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVI 88 (355)
T ss_pred hHHHHHHHHHhc-CCCeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEE
Confidence 456677777777 7899999999753 568899999876653 3333 22 3455566666676 77
Q ss_pred eecc
Q psy9357 92 IGNC 95 (132)
Q Consensus 92 IGNc 95 (132)
||=|
T Consensus 89 IAvG 92 (355)
T cd08197 89 VALG 92 (355)
T ss_pred EEEC
Confidence 6544
No 141
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=52.54 E-value=22 Score=34.13 Aligned_cols=39 Identities=10% Similarity=0.350 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
.|+.+.+++.|+++++ ++..||+|||++.+ ..+|-+.|.
T Consensus 57 ~~~k~~~~~~ik~~~k---~ad~iilAtDpDREGE~I~~~i~~~l~ 99 (860)
T PRK06319 57 LPDKEEVINKICKLAK---KCDVVYLSPDPDREGEAIAWHIANQLP 99 (860)
T ss_pred CccHHHHHHHHHHHHH---hCCEEEECCCCCcchHHHHHHHHHHcC
Confidence 5788889999998886 56899999999973 233555564
No 142
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=52.47 E-value=1.2e+02 Score=24.27 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcCeee
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQANHFI 92 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~~FI 92 (132)
.+-.++..-+..+.+.. +.++|+|..+...| .+-++++|++.|++|+. ++ | .+++..+.-..+|..+
T Consensus 114 ~~~~~~~~~~~~~~~~~-g~~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~ 192 (333)
T cd06358 114 TPEQQLAPAIPWLAEEK-GARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVL 192 (333)
T ss_pred CcHHHHHHHHHHHHHhc-CCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEE
Confidence 33345545555555655 78999999865543 55677788877888864 22 2 6788888888888877
Q ss_pred eccee-ecchhhhhhhhcCCCC
Q psy9357 93 GNCIS-SFTAFVKRHRDVKGLP 113 (132)
Q Consensus 93 GNcvS-SFTa~V~reR~~~G~p 113 (132)
-.... ....+++..|+ .|+.
T Consensus 193 ~~~~~~~~~~~~~~~~~-~G~~ 213 (333)
T cd06358 193 STLVGQDAVAFNRQFAA-AGLR 213 (333)
T ss_pred EeCCCCchHHHHHHHHH-cCCC
Confidence 54333 33445565564 4654
No 143
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=52.25 E-value=1.3e+02 Score=25.07 Aligned_cols=92 Identities=8% Similarity=0.065 Sum_probs=60.3
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-------cHHHHHHhhccCCcEEEeC---C----C-chHHHHHH
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN-------LNEPLKEAFKRTEIRIVPS---D----Q-SPHVDLAI 84 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-------~~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~I 84 (132)
.-+..|+...+.+.+.++++.+ +-++|.|..+.+. .++.|.++++..+++|+.. + + ..++..+
T Consensus 114 ~~R~~p~~~~~~~a~~~ll~~~-~W~~vaiiy~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~i- 191 (387)
T cd06386 114 LTRVAPSYVKMGETFSALFERF-HWRSALLVYEDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAI- 191 (387)
T ss_pred eEEecCchHHHHHHHHHHHHhC-CCeEEEEEEEcCCCCccceehHHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHH-
Confidence 3355688888888888888887 8888887774333 1778899998878766643 1 1 3444443
Q ss_pred HhhcCeeeecceeecchhhhhhhhcCCCC
Q psy9357 85 LSQANHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 85 l~~A~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
-..++++|-.|-+.-...+-++=..+|+.
T Consensus 192 k~~~rvii~~~~~~~~~~ll~~A~~~gm~ 220 (387)
T cd06386 192 QASERVVIMCAGADTIRSIMLAAHRRGLT 220 (387)
T ss_pred HhcCcEEEEecCHHHHHHHHHHHHHcCCC
Confidence 34559999876555555554444445654
No 144
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=52.14 E-value=43 Score=27.68 Aligned_cols=82 Identities=9% Similarity=-0.032 Sum_probs=54.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecC-Ccc-------cHHHHHHhhccCCcEEEeC---C-----C-chHHHH
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATD-NNN-------LNEPLKEAFKRTEIRIVPS---D-----Q-SPHVDL 82 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD-~~~-------~~~eLk~~l~~~~~~vv~l---~-----~-~~~vDl 82 (132)
.-+..|+.....+.+.++++.. +.++|+|..+ .+. ..+.|.++|++.+++|+.. + + .+.+..
T Consensus 119 ~fr~~p~~~~~~~a~~~~~~~~-~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ 197 (396)
T cd06373 119 LTRTGPSYTKLGEFVLALHEHF-NWSRAALLYHDDKNDDRPCYFTLEGVYTVLKEENITVSDFPFDEDKELDDYKELLRD 197 (396)
T ss_pred eeeccccHHHHHHHHHHHHHHc-CCeEEEEEEECCCCCcchHHHHHHHHHHHHhhcCceeeEEeecCCccccCHHHHHHH
Confidence 4467788888888888888887 8999999974 333 2577888888777766542 2 1 344444
Q ss_pred HHHhhcCeeeecceeecchhh
Q psy9357 83 AILSQANHFIGNCISSFTAFV 103 (132)
Q Consensus 83 ~Il~~A~~FIGNcvSSFTa~V 103 (132)
+- ..+|.+|..+-..=...+
T Consensus 198 ik-~~~~vii~~~~~~~~~~~ 217 (396)
T cd06373 198 IS-KKGRVVIMCASPDTVREI 217 (396)
T ss_pred HH-hcCcEEEEecCHHHHHHH
Confidence 43 456888876655433333
No 145
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=52.13 E-value=46 Score=27.72 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCC-cEEEeC--CC----chHHHHHHHhhcCeeeecce
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTE-IRIVPS--DQ----SPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~-~~vv~l--~~----~~~vDl~Il~~A~~FIGNcv 96 (132)
+++++.+.+++..+.++++|-||..- +.+++++.|++.+ +.++.. |. ...++++--.++|..||=|-
T Consensus 11 ~l~~l~~~l~~~~~~~~~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG 87 (339)
T cd08173 11 VLEKIPNVLRDLLLGGRVLVVTGPTTKSIAGKKVEALLEDEGEVDVVIVEDATYEEVEKVESSARDIGADFVIGVGG 87 (339)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCchHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCC
Confidence 45556666664215689999998764 5788888997665 222222 33 34445555568898885543
No 146
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=51.38 E-value=60 Score=23.42 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeeeecceeecchhhhhhhh
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRD 108 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~ 108 (132)
++.+.+-..+... +.+.|+|..=..+-.++|.+.+....+.++.+.+.. ..+.+||..| ||.|+=..-|.++.-
T Consensus 22 g~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~----~~~~~~DivI-~aT~~~~~~i~~~~~ 95 (135)
T PF01488_consen 22 GAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE----EALQEADIVI-NATPSGMPIITEEML 95 (135)
T ss_dssp HHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC----HHHHTESEEE-E-SSTTSTSSTHHHH
T ss_pred HHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH----HHHhhCCeEE-EecCCCCcccCHHHH
Confidence 4667777778887 999999988555557778777855567777763322 5677888655 666666555555544
Q ss_pred cCC
Q psy9357 109 VKG 111 (132)
Q Consensus 109 ~~G 111 (132)
..+
T Consensus 96 ~~~ 98 (135)
T PF01488_consen 96 KKA 98 (135)
T ss_dssp TTT
T ss_pred HHH
Confidence 433
No 147
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=51.21 E-value=39 Score=26.23 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=34.5
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc-ccHHHHHHhhcc
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN-NLNEPLKEAFKR 66 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~-~~~~eLk~~l~~ 66 (132)
...+|+.++| ..+++|+.+- |++.||+-+-.+ .-+++|...|..
T Consensus 99 K~DLaed~dI-~~~~~~L~ea-Ga~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 99 KADLAEDADI-SLVKRWLREA-GAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cccccchHhH-HHHHHHHHHc-CCcceEEEeccCcccHHHHHHHHHh
Confidence 5578885554 5688899988 899999999544 469999998853
No 148
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=51.21 E-value=23 Score=30.59 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=36.9
Q ss_pred cccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEe
Q psy9357 9 LGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 9 ~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~ 73 (132)
+|...+...++.+-|.= .-+.+-+. +++.|+|+||.++- -.++.+.|+..|++|..
T Consensus 41 lgi~g~~i~~s~~p~~~--------cad~ii~~-gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~~ 100 (360)
T PRK14719 41 LKINANFITVSNTPVFQ--------IADDLIAE-NISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNN 100 (360)
T ss_pred cCCCCcEEEEeCCchHH--------HHHHHHHc-CCCEEEEEECCCCCCCccchHHHHHHHHCCCEEEe
Confidence 45555556666666653 33333344 88999999987762 22567888888998854
No 149
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=51.19 E-value=26 Score=35.07 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCC-cccHHHHHHhhccCCcEEEeC--CCchHHHHHHHhhcCeeeecceeecchhhhhh
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDN-NNLNEPLKEAFKRTEIRIVPS--DQSPHVDLAILSQANHFIGNCISSFTAFVKRH 106 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~-~~~~~eLk~~l~~~~~~vv~l--~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~re 106 (132)
.+.++.+.+++++.=-=|||.+|- .+..+||.+.|+..|+++... +..-.+|..-=|.+|+.|| ++|+..-+.|=
T Consensus 323 ~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~GeidvLVG--vAsyYG~lVRG 400 (1187)
T COG1110 323 SLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEVDVLVG--VASYYGVLVRG 400 (1187)
T ss_pred cHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccchhhhhhhccCceeEEEE--ecccccceeec
Confidence 334444445554333459999984 568999999999999988876 5578888888999999998 67888877653
Q ss_pred hhcCCCC-----CCcccCC
Q psy9357 107 RDVKGLP-----SSFWAFP 120 (132)
Q Consensus 107 R~~~G~p-----s~F~g~~ 120 (132)
.++| .=|+|.|
T Consensus 401 ---lDLP~rirYaIF~GvP 416 (1187)
T COG1110 401 ---LDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ---CCchhheeEEEEecCC
Confidence 2345 3677776
No 150
>PRK02135 hypothetical protein; Provisional
Probab=51.00 E-value=22 Score=28.82 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=33.3
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHH
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAI 84 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~I 84 (132)
.-.-+||.+|...+-+|..+.|++.+-..+++ |..-+-|+.|
T Consensus 145 ~~~~~FvLgDH~~~~~ee~~~L~~~ga~~iSlGP~~l~AshcI 187 (201)
T PRK02135 145 PENPVFVLGDHIGFTEEEENLLKRLGAEKISLGPKMLHADHCI 187 (201)
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHhCCeEEEeCcHHHHHHHHH
Confidence 34458999999999999999998888889998 7655555555
No 151
>PF01725 Ham1p_like: Ham1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae (Baker's yeast) HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. S. cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions [].; GO: 0016787 hydrolase activity; PDB: 3TQU_A 1VP2_B 3S86_D 1B78_A 2MJP_B 2Q16_A 2PYU_A 1K7K_A 2ZTI_A 2DVP_A ....
Probab=50.96 E-value=15 Score=28.64 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=23.0
Q ss_pred EEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
|++||-|.+-+.|++..|+..+++++++
T Consensus 1 i~~aT~N~~K~~E~~~~l~~~~i~v~~~ 28 (189)
T PF01725_consen 1 IIFATGNKGKIREIQELLKPLGIEVISL 28 (189)
T ss_dssp EEEE-S-HHHHHHHHHHCTTTTEEEEEC
T ss_pred CEEEcCCHHHHHHHHHHHhhcCCcEEeH
Confidence 6889999999999999999888888764
No 152
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=50.89 E-value=1e+02 Score=24.27 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcCee
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQANHF 91 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~~F 91 (132)
.|+..+....+-+.+.+. +.++|.+..+... ..+.+++++++.|++++. .+ + .+++..+.-..+|.+
T Consensus 117 ~~~~~~~~~~~~~~l~~~-g~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav 195 (336)
T cd06326 117 RASYADEIAAIVRHLVTL-GLKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAV 195 (336)
T ss_pred CCChHHHHHHHHHHHHHh-CCceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcCCCEE
Confidence 466677777777777776 7888887774333 355667777777776544 22 2 577888777788977
Q ss_pred eeccee-ecchhhhhhhhcCCCC
Q psy9357 92 IGNCIS-SFTAFVKRHRDVKGLP 113 (132)
Q Consensus 92 IGNcvS-SFTa~V~reR~~~G~p 113 (132)
|-.+.. ....+++..|+ .|+.
T Consensus 196 ~~~~~~~~a~~~i~~~~~-~G~~ 217 (336)
T cd06326 196 IMVGAYKAAAAFIRALRK-AGGG 217 (336)
T ss_pred EEEcCcHHHHHHHHHHHh-cCCC
Confidence 766554 35566666654 4543
No 153
>PRK07219 DNA topoisomerase I; Validated
Probab=50.64 E-value=23 Score=33.64 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL 56 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~ 56 (132)
.|+.+.+++.|+.+++ ++..|+||||++.+
T Consensus 81 ~~~~~~~~~~lk~l~~---~ad~iiiAtD~DRE 110 (822)
T PRK07219 81 KITKQNYINALKKLAK---DADEIIIATDYDRE 110 (822)
T ss_pred cCCHHHHHHHHHHHHh---cCCEEEEcCCCChh
Confidence 3566788888888886 57899999999974
No 154
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=48.78 E-value=37 Score=25.98 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=38.1
Q ss_pred ccccccCCccccccccCCCHH----HHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc
Q psy9357 8 CLGYRNEYGVATEELCFPSVE----TVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66 (132)
Q Consensus 8 C~g~~~e~~~lt~~~C~Ps~~----~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~ 66 (132)
|.|+...-.++|..++-|-++ .|+..+-+.+.+. |++.|+|.|.. .-++++++|+.
T Consensus 7 a~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~--~~~~i~~~l~~ 66 (217)
T cd04197 7 ADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCS--HSDQIKEYIEK 66 (217)
T ss_pred cCCCcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCC--CHHHHHHHHhh
Confidence 345544456778777755332 4666666677776 99999999974 34677788765
No 155
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=48.56 E-value=43 Score=21.28 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCcEEEEecC-CcccHHHHHHhhccCCcEEEeC
Q psy9357 33 QLKRVVREHGQIKYIFVATD-NNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD-~~~~~~eLk~~l~~~~~~vv~l 74 (132)
-+.++++..+.++.||+..+ .+..+.+|.+.++..++++...
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v 49 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEV 49 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEe
Confidence 35555665324899999987 5667788888887777777653
No 156
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=47.95 E-value=87 Score=22.70 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHH--HHHHhhcCeeeecceeecchhhh
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVD--LAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vD--l~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
+..++++...+++++..+.|.+.|=+...+.++++..+...+-.... ......+ ...-..++.+--+..+-=...|+
T Consensus 75 ~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~ 154 (189)
T cd08556 75 PGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLLTPELVR 154 (189)
T ss_pred hhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhCCHHHHH
Confidence 45677777777776346888888855667888888876532222211 1122222 12222333222222222234566
Q ss_pred hhhhcCCCCCCcccCCCC
Q psy9357 105 RHRDVKGLPSSFWAFPIK 122 (132)
Q Consensus 105 reR~~~G~ps~F~g~~~~ 122 (132)
+.++ .|++-..|+.+.+
T Consensus 155 ~~~~-~g~~v~~wtvn~~ 171 (189)
T cd08556 155 AAHA-AGLKVYVWTVNDP 171 (189)
T ss_pred HHHH-cCCEEEEEcCCCH
Confidence 6666 6999988988743
No 157
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=47.69 E-value=95 Score=24.47 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=49.0
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc-ccHHHHHHhhccCCcEEEeC-CC--chHHHHHHHhhcCeeeecc
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN-NLNEPLKEAFKRTEIRIVPS-DQ--SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~-~~~~eLk~~l~~~~~~vv~l-~~--~~~vDl~Il~~A~~FIGNc 95 (132)
..+++| .+...+-++.+.++ +.+-|++.+..+ ...+++.+.+. ...++.+ .. ...+ .+++.+||.||||-
T Consensus 133 ~~k~w~-~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~--~~~~~~~~~~~~l~e~-~~li~~~~l~I~~D 206 (279)
T cd03789 133 PAKRWP-AERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALG--GPRVVNLAGKTSLREL-AALLARADLVVTND 206 (279)
T ss_pred ccccCC-HHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcC--CCccccCcCCCCHHHH-HHHHHhCCEEEeeC
Confidence 456666 44444444444443 566666655322 23445554442 2344444 22 2222 67889999999997
Q ss_pred eeecchhhhhhhhcCCCCC-CcccCC
Q psy9357 96 ISSFTAFVKRHRDVKGLPS-SFWAFP 120 (132)
Q Consensus 96 vSSFTa~V~reR~~~G~ps-~F~g~~ 120 (132)
|+-+... .+.|.|+ .+||-.
T Consensus 207 ----sg~~HlA-~a~~~p~i~l~g~~ 227 (279)
T cd03789 207 ----SGPMHLA-AALGTPTVALFGPT 227 (279)
T ss_pred ----CHHHHHH-HHcCCCEEEEECCC
Confidence 3333333 6778886 666644
No 158
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=47.18 E-value=29 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=28.2
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
..=+++.++|.+.|+..++ . +.+.+||.+|..
T Consensus 269 n~~vE~~eev~~~i~~~~~-~-~~~~l~v~pdcg 300 (326)
T PRK08575 269 NTKMEKISTIRRIVNKVKR-K-GVSDIIVGNNTL 300 (326)
T ss_pred CCCCCCHHHHHHHHHHHHh-c-CCCeEEEeCCCC
Confidence 3457899999999999999 6 889999999965
No 159
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=47.18 E-value=75 Score=27.51 Aligned_cols=93 Identities=9% Similarity=0.014 Sum_probs=57.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CCC-------chHHHHHHH
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SDQ-------SPHVDLAIL 85 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~~-------~~~vDl~Il 85 (132)
--+..|+-...++.+.++++.. +-+.|.|..+.+. .++.|++++++.|+.|+. .+. .++|..+.-
T Consensus 151 ffRt~psd~~qa~ai~~ll~~~-~W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~ 229 (458)
T cd06375 151 FARTVPPDFYQAKAMAEILRFF-NWTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQ 229 (458)
T ss_pred eEEecCCcHHHHHHHHHHHHHC-CCeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhc
Confidence 3456677777777787888887 8899888875444 467777888777887763 222 234444443
Q ss_pred -hhcCeeeecceeecchhhhhhhhcCCCC
Q psy9357 86 -SQANHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 86 -~~A~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
..||++|.-+-..-...+-++-...|..
T Consensus 230 ~~~a~vVvl~~~~~~~~~ll~~a~~~g~~ 258 (458)
T cd06375 230 KPNARVVVLFTRSEDARELLAAAKRLNAS 258 (458)
T ss_pred cCCCEEEEEecChHHHHHHHHHHHHcCCc
Confidence 4789777655433333343333334554
No 160
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=47.07 E-value=43 Score=28.08 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCccc
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNL 56 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~ 56 (132)
..-|++-.+++.+. ++..|+||||..+-
T Consensus 28 kpmI~rV~e~a~~s--~~~rvvVATDde~I 55 (247)
T COG1212 28 KPMIVRVAERALKS--GADRVVVATDDERI 55 (247)
T ss_pred chHHHHHHHHHHHc--CCCeEEEEcCCHHH
Confidence 34455555555554 78999999987653
No 161
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=47.06 E-value=78 Score=27.45 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=55.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEE-ecCCcc---cHHHHHHhhccCCcEEEe---CCC---------chHHHH
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFV-ATDNNN---LNEPLKEAFKRTEIRIVP---SDQ---------SPHVDL 82 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfI-aTD~~~---~~~eLk~~l~~~~~~vv~---l~~---------~~~vDl 82 (132)
|--+..|+-...++.+.++++.. +-+.|.| ..|.+. -++.|++++++.|+.|+. ++. .+++..
T Consensus 148 ~ffRt~psd~~q~~ai~~li~~f-~W~~Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~~l~~ 226 (469)
T cd06365 148 SLYQMAPKDTSLPLGMVSLMLHF-SWTWVGLVISDDDRGEQFLSDLREEMQRNGICLAFVEKIPVNMQLYLTRAEKYYNQ 226 (469)
T ss_pred cceEecCCchhHHHHHHHHHHhc-CCeEEEEEEecChhHHHHHHHHHHHHHHCCeEEEEEEEecCCchhhHHHHHHHHHH
Confidence 44478888888888888888887 8899885 445544 477888888888887764 222 234444
Q ss_pred HHHhhcCeeeeccee
Q psy9357 83 AILSQANHFIGNCIS 97 (132)
Q Consensus 83 ~Il~~A~~FIGNcvS 97 (132)
+.-..|+++|--+-.
T Consensus 227 i~~~~arvIvl~~~~ 241 (469)
T cd06365 227 IMTSSAKVIIIYGDT 241 (469)
T ss_pred hhcCCCeEEEEEcCc
Confidence 445789999987654
No 162
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=46.73 E-value=1.1e+02 Score=25.93 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=49.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CCC-------chHHHHHHH-h
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SDQ-------SPHVDLAIL-S 86 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~~-------~~~vDl~Il-~ 86 (132)
+..|+-....+.+-+.++.. +.++|.|..+.+. ..+.+++.+++.|+.|+. .+. .++|..+.- .
T Consensus 151 R~~p~d~~~~~a~~~~l~~~-~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~d~~~~l~~l~~~~ 229 (452)
T cd06362 151 RTVPPDSFQAQAMVDIVKAF-NWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSATEEEFDNIIRKLLSKP 229 (452)
T ss_pred EecCChHHHHHHHHHHHHHC-CCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCCCHHHHHHHHHHHhhcC
Confidence 45577777777777788877 8899999886554 467788888877887763 221 223333333 3
Q ss_pred hcCeeeeccee
Q psy9357 87 QANHFIGNCIS 97 (132)
Q Consensus 87 ~A~~FIGNcvS 97 (132)
.|++.|.-+-.
T Consensus 230 ~a~viil~~~~ 240 (452)
T cd06362 230 NARVVVLFCRE 240 (452)
T ss_pred CCeEEEEEcCh
Confidence 57876655533
No 163
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=46.66 E-value=1.2e+02 Score=23.94 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHH-HHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C-CC----chHHHHHHHhhcCee
Q psy9357 25 PSVETVVRQLKRV-VREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S-DQ----SPHVDLAILSQANHF 91 (132)
Q Consensus 25 Ps~~~I~~~ik~~-~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l-~~----~~~vDl~Il~~A~~F 91 (132)
|+...-++.+-+. .+.. +.++|.|....+. ..+.++++++..|.+++. + +. .+.+..+.-..+|+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~-g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v 194 (343)
T PF13458_consen 116 PSDSQQAAALAEYLAKKL-GAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVV 194 (343)
T ss_dssp --HHHHHHHHHHHHHHTT-TTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEE
T ss_pred ccccHHHHHHHHHHHHHc-CCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCEE
Confidence 5665556665555 4545 8899999884454 456677777777888762 3 22 678888888889975
Q ss_pred eec-ceeecchhhhhhhhcC
Q psy9357 92 IGN-CISSFTAFVKRHRDVK 110 (132)
Q Consensus 92 IGN-cvSSFTa~V~reR~~~ 110 (132)
+.- ..+.-..+++..|+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~ 214 (343)
T PF13458_consen 195 VLAGDPADAAAFLRQLRQLG 214 (343)
T ss_dssp EEESTHHHHHHHHHHHHHTT
T ss_pred EEeccchhHHHHHHHHHhhc
Confidence 554 4444555666665533
No 164
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=46.41 E-value=1.4e+02 Score=23.39 Aligned_cols=93 Identities=9% Similarity=0.045 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcCee
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQANHF 91 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~~F 91 (132)
.|+-......+-+.+.+. +.++|.+..+... ..+.+++++++.|++++. ++ + ..++..+....+|.+
T Consensus 114 ~~~~~~~~~~~~~~l~~~-g~~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaI 192 (312)
T cd06333 114 PQNDRLMAEAILADMKKR-GVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAV 192 (312)
T ss_pred CCCcHHHHHHHHHHHHHc-CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEE
Confidence 366677777776667776 8899988874433 355677778777877653 21 2 455555556668877
Q ss_pred eecceeecc-hhhhhhhhcCCCCCCccc
Q psy9357 92 IGNCISSFT-AFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 92 IGNcvSSFT-a~V~reR~~~G~ps~F~g 118 (132)
|-.....-. .+++..|+ .|+..-+++
T Consensus 193 i~~~~~~~~~~~~~~l~~-~g~~~p~~~ 219 (312)
T cd06333 193 LIWGSGTPAALPAKNLRE-RGYKGPIYQ 219 (312)
T ss_pred EEecCCcHHHHHHHHHHH-cCCCCCEEe
Confidence 755443333 35555554 566544443
No 165
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=46.31 E-value=70 Score=22.75 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=16.9
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
+++.|.+-++ .+-+++.++.++.+++++
T Consensus 79 g~~~v~~~~g--~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 79 GVKAVWLQPG--AESEELIEAAREAGIRVI 106 (116)
T ss_dssp T-SEEEE-TT--S--HHHHHHHHHTT-EEE
T ss_pred CCCEEEEEcc--hHHHHHHHHHHHcCCEEE
Confidence 7888888877 556777777777677665
No 166
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=46.12 E-value=23 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=26.7
Q ss_pred cEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.++++||.|.+-+.|+++.|...+++|+.+
T Consensus 128 ~kIv~AT~N~~K~~E~~~iL~~~~iev~~l 157 (328)
T PRK02491 128 DTILIATRNEGKTKEFRKLFGKLGYKVENL 157 (328)
T ss_pred CeEEEEcCChhHHHHHHHHHhhcCcEEEeh
Confidence 459999999999999999998778888876
No 167
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=45.80 E-value=92 Score=21.02 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 34 LKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
+.+++... ++.-|||+|......+-++.+|+. |..|+.
T Consensus 54 ~~~ll~~~-~~D~V~I~tp~~~h~~~~~~~l~~-g~~v~~ 91 (120)
T PF01408_consen 54 LEELLADE-DVDAVIIATPPSSHAEIAKKALEA-GKHVLV 91 (120)
T ss_dssp HHHHHHHT-TESEEEEESSGGGHHHHHHHHHHT-TSEEEE
T ss_pred HHHHHHhh-cCCEEEEecCCcchHHHHHHHHHc-CCEEEE
Confidence 45556655 789999999888888888888875 776665
No 168
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=45.79 E-value=1.3e+02 Score=22.82 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc-EEEeC-CCchHHHH-HHHhhcCeeeecce-eecch
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI-RIVPS-DQSPHVDL-AILSQANHFIGNCI-SSFTA 101 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~-~vv~l-~~~~~vDl-~Il~~A~~FIGNcv-SSFTa 101 (132)
.++.+++.++.+.++.++++-+++.++...+...++...+..+. ..|.+ ...+.-++ .++..||+||-... -+|.
T Consensus 217 ~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~- 295 (375)
T cd03821 217 GLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFG- 295 (375)
T ss_pred CHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCC-
Confidence 34566666666666543666666666554555555544343333 23333 33333333 25677999985433 2233
Q ss_pred hhhhhhhcCCCC
Q psy9357 102 FVKRHRDVKGLP 113 (132)
Q Consensus 102 ~V~reR~~~G~p 113 (132)
.+--|=+..|.|
T Consensus 296 ~~~~Eama~G~P 307 (375)
T cd03821 296 IVVAEALACGTP 307 (375)
T ss_pred cHHHHHHhcCCC
Confidence 333455777777
No 169
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=45.75 E-value=50 Score=26.81 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcccH-HHHHHhhccCCcEEEe
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNNLN-EPLKEAFKRTEIRIVP 73 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~~~-~eLk~~l~~~~~~vv~ 73 (132)
..+.+.++.+ ++|+|-|.|--..++ +.+++.|...|++|+.
T Consensus 109 ~A~~~AL~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~ 150 (239)
T TIGR02990 109 SAAVDGLAAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVN 150 (239)
T ss_pred HHHHHHHHHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEee
Confidence 3445566777 999999999876654 4577788888988875
No 170
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=45.69 E-value=20 Score=24.83 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=30.9
Q ss_pred ccccccCCCHH--HHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhc-cCCcEEEeC
Q psy9357 18 ATEELCFPSVE--TVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFK-RTEIRIVPS 74 (132)
Q Consensus 18 lt~~~C~Ps~~--~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~-~~~~~vv~l 74 (132)
+....|-.... ..-+-|.+.+.+. + ..+||| |. +|++.|+ ..|+.++.+
T Consensus 39 ~~~~~c~h~~~~~~addci~~~~~~~-~--~~~VaT~D~-----~Lr~~lr~~~GvPvi~l 91 (101)
T PF04900_consen 39 LERRKCNHKETPGSADDCILDLAGKN-N--KYIVATQDK-----ELRRRLRKIPGVPVIYL 91 (101)
T ss_pred hHhhcCCCCCCCcCHHHHHHHHhccC-C--eEEEEecCH-----HHHHHHhcCCCCCEEEE
Confidence 33444543332 4455566666554 2 399999 75 6888888 568888875
No 171
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=45.62 E-value=42 Score=26.25 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=55.7
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEE---e-C-C---CchHHHHHH---
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIV---P-S-D---QSPHVDLAI--- 84 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv---~-l-~---~~~~vDl~I--- 84 (132)
.-.-.|+.....+.+..+++.. +-+.|.|-.|.+.. .+.+++.++..++.++ . . . +...+...|
T Consensus 98 ~~r~~p~~~~~~~a~~~~l~~~-~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 176 (348)
T PF01094_consen 98 FFRTVPSDSSQARALVDLLKHF-GWTRVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVISSDSDAEELLKKLKEI 176 (348)
T ss_dssp EEESSB-HHHHHHHHHHHHHHT-TSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhhhcC-CCceeeeeccccccccccchhhhhhhcccccceecccccccccccchhhhhhhhhhc
Confidence 3446788888899999999998 99999999977776 8888888887543222 1 1 1 123333333
Q ss_pred HhhcCeeeecceeecchhh
Q psy9357 85 LSQANHFIGNCISSFTAFV 103 (132)
Q Consensus 85 l~~A~~FIGNcvSSFTa~V 103 (132)
-..++++|-.|-+.-...+
T Consensus 177 ~~~~rvvil~~~~~~~~~~ 195 (348)
T PF01094_consen 177 KSGARVVILCSSPEDARQF 195 (348)
T ss_dssp TTTTSEEEEESBHHHHHHH
T ss_pred cccceeeeeeccccccccc
Confidence 3789998877655544333
No 172
>PRK09401 reverse gyrase; Reviewed
Probab=45.53 E-value=32 Score=34.25 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
++.+.+++.|+++.+ ++..|+||||++.+ ..++.++++
T Consensus 704 ~~k~~~~~~Lr~l~~---~~d~IiiAtDpDrEGE~Ia~~i~~~l~ 745 (1176)
T PRK09401 704 EDKEEIIEALRELAL---EVDEVLIATDPDTEGEKIAWDLYLLLS 745 (1176)
T ss_pred CCHHHHHHHHHHHHh---cCCEEEEccCcChhHHHHHHHHHHHhc
Confidence 778888999998885 67999999999974 234666665
No 173
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=44.91 E-value=29 Score=22.69 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=21.3
Q ss_pred CcEEEEecCCcc----cHHHHHHhhccCCcEE
Q psy9357 44 IKYIFVATDNNN----LNEPLKEAFKRTEIRI 71 (132)
Q Consensus 44 lk~VfIaTD~~~----~~~eLk~~l~~~~~~v 71 (132)
.+.|+|++|++. ...++.+.|...++++
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~ 74 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNV 74 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeE
Confidence 589999999987 4667777787666543
No 174
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=44.83 E-value=28 Score=26.47 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEeC
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~l 74 (132)
..-+-|.+++.++ + .++||| |. ||++.|++.|+.|+++
T Consensus 85 ~aDe~i~~~a~~~-~--~~iVaTnD~-----eLk~rlr~~GIPvi~l 123 (136)
T COG1412 85 YADECLLEAALKH-G--RYIVATNDK-----ELKRRLRENGIPVITL 123 (136)
T ss_pred ChHHHHHHHHHHc-C--CEEEEeCCH-----HHHHHHHHcCCCEEEE
Confidence 3345566666666 3 799999 75 7999999889998886
No 175
>PRK14823 putative deoxyribonucleoside-triphosphatase; Provisional
Probab=44.60 E-value=26 Score=27.58 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.2
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.|++||.|.+-+.|+++.|.. +++|+++
T Consensus 2 ki~~aT~N~~K~~E~~~il~~-~~~v~~~ 29 (191)
T PRK14823 2 KLVFATNNKHKLEEIRSILPE-KIELLSL 29 (191)
T ss_pred EEEEECCChhHHHHHHHHhcC-CCEEEeh
Confidence 489999999999999999975 6787765
No 176
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=44.49 E-value=64 Score=26.94 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCC-CcEEEEecCCcc---cHHHHHHhhccCCcEEE--e--C---CC----chHHHHHHHhhcCeeeec
Q psy9357 30 VVRQLKRVVREHGQ-IKYIFVATDNNN---LNEPLKEAFKRTEIRIV--P--S---DQ----SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 30 I~~~ik~~~~~~~~-lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv--~--l---~~----~~~vDl~Il~~A~~FIGN 94 (132)
++.++.+.++.+ + .++++|-||... +.+++++.|++.++++. . . |. ...++.+.- ++|..||=
T Consensus 10 ~l~~l~~~~~~~-~~~~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIai 87 (332)
T cd08549 10 AINDIGPIINKI-GVNSKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGI 87 (332)
T ss_pred hHHHHHHHHHHc-CCCCcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEE
Confidence 455666667766 4 379999999765 46889999987665332 2 1 22 233444444 78888754
Q ss_pred c
Q psy9357 95 C 95 (132)
Q Consensus 95 c 95 (132)
|
T Consensus 88 G 88 (332)
T cd08549 88 G 88 (332)
T ss_pred C
Confidence 4
No 177
>PRK05582 DNA topoisomerase I; Validated
Probab=44.46 E-value=35 Score=31.50 Aligned_cols=93 Identities=16% Similarity=0.302 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccC--CcEEEe---------------C--CC----
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRT--EIRIVP---------------S--DQ---- 76 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~--~~~vv~---------------l--~~---- 76 (132)
.|+.+.+++.|+++++ ++..|++|||++.+ ..++.+.+... .++.+. + .+
T Consensus 57 ~~~~~~~~~~ik~l~~---~~d~ii~AtD~DrEGE~I~~~i~~~~~~~~~~~~R~~~s~lt~~~I~~a~~nl~~~~~~l~ 133 (650)
T PRK05582 57 IRGKGPVIKELKKAAK---KAKKVYLATDPDREGEAIAWHLAHILGLDEKEKNRIVFNEITKDAIKNAFKNPRKIDMNLV 133 (650)
T ss_pred CCcHHHHHHHHHHHHh---cCCEEEECCCCCcchHHHHHHHHHHhCCCCCCceEEEEcccCHHHHHHHHhCcccccHHHH
Confidence 4667788888888885 56899999999974 33466666421 122222 1 11
Q ss_pred -----chHHHHHHHhhc----------Ceeeecceeecchh-hhhhhhcCCC-CCCcccC
Q psy9357 77 -----SPHVDLAILSQA----------NHFIGNCISSFTAF-VKRHRDVKGL-PSSFWAF 119 (132)
Q Consensus 77 -----~~~vDl~Il~~A----------~~FIGNcvSSFTa~-V~reR~~~G~-ps~F~g~ 119 (132)
-..+|.+|+... ..=+|-|.+..-++ |.|+|++.+| |..||.+
T Consensus 134 ~a~~aR~~~D~liG~n~tr~~t~~~~~~ls~GRVQtPtL~lvv~Re~eI~~F~p~~y~~i 193 (650)
T PRK05582 134 DAQQARRILDRLVGYKLSPLLWKKVKKGLSAGRVQSVALKLIIDREKEIRAFVPEEYWTI 193 (650)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHhhcCCCccccchHhHHHHHHhHHHHHHhCCCCccEEE
Confidence 223444443322 12334444433333 4799999997 8899976
No 178
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=44.35 E-value=28 Score=28.27 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=32.5
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHH
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAIL 85 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il 85 (132)
.-.-+||.+|....-+|..+.|++.+.+.+++ |-.-+-|+.|.
T Consensus 143 ~~np~FIlGDH~g~t~e~~k~L~r~~~~~ISlGP~~lha~hcit 186 (197)
T COG1901 143 IPNPVFILGDHIGLTEEDEKLLERHAAKKISLGPLSLHADHCIT 186 (197)
T ss_pred CCCceEEeeCCCCCCHHHHHHHHHhhCceeEeCchHHHHHHHHH
Confidence 44678999998888888888888777677888 66666666554
No 179
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=44.29 E-value=44 Score=21.27 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=28.6
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 16 GVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 16 ~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
..++..+++||.++....|+...-.. +-.-.+.-+|..
T Consensus 2 ~~l~~G~~F~~~~e~k~av~~yai~~-~~~~~v~ksd~~ 39 (67)
T PF03108_consen 2 PELEVGQTFPSKEEFKEAVREYAIKN-GFEFKVKKSDKK 39 (67)
T ss_pred CccccCCEECCHHHHHHHHHHHHHhc-CcEEEEeccCCE
Confidence 46788999999999999998887765 555555555554
No 180
>PRK07726 DNA topoisomerase III; Provisional
Probab=44.24 E-value=28 Score=32.27 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
.++.+.+++.|+.+++ ++..|++|||++.+ ..++-..+.
T Consensus 76 ~~~~~~~~~~ik~l~~---~~d~Ii~AtD~DREGE~I~~~i~~~~~ 118 (658)
T PRK07726 76 KKKTAKQFNVVKKLLK---QATEIVIATDADREGELIAREILDYCG 118 (658)
T ss_pred ccchHHHHHHHHHHHh---hCCeEEEcCCCCccccHHHHHHHHHhC
Confidence 4556677888888875 67999999999873 334666665
No 181
>PF13707 RloB: RloB-like protein
Probab=44.02 E-value=86 Score=23.32 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHH----HhCCCcEEEEecCCc--c-cHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcCee
Q psy9357 25 PSVETVVRQLKRVVR----EHGQIKYIFVATDNN--N-LNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQANHF 91 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~----~~~~lk~VfIaTD~~--~-~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~~F 91 (132)
.+...+++.+.+..+ .. +-..||+.-|.+ + ..+.|+++++...=+-+.+ -.+|-.++|+|-|-...
T Consensus 38 ~~p~~lv~~a~~~~~~~~~~~-~~d~v~~V~D~D~~~~~~~~~~~~~~~a~~~~i~l~~SnPcFE~WlLlHf~~~ 111 (183)
T PF13707_consen 38 SDPSSLVEKAKKKRKKKKNDN-EYDEVWCVFDRDQNDFEHEKLEEAIKKAKRNKINLAVSNPCFELWLLLHFEDV 111 (183)
T ss_pred CCHHHHHHHHHHHHhhhcccc-CCCEEEEEEeCCCCcCcHHHHHHHHHhccccCeEEEEecCcHHHHHHHhccCc
Confidence 788999999999888 33 679999999888 3 4777888887542112222 34678999999765443
No 182
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=44.00 E-value=73 Score=23.74 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcC
Q psy9357 34 LKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQAN 89 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~ 89 (132)
|.++.+++ +++.+|||.=+ +.++. ...++++.. ...-.+|.||+.+|.
T Consensus 2 i~~~a~r~-~i~vi~Van~~-h~~~~------~~~~~~i~Vd~g~DaaD~~I~~~~~ 50 (130)
T PF02639_consen 2 IIRVAKRY-GIPVIFVANYS-HRLPR------SPYVEMIVVDSGFDAADFYIVNHAK 50 (130)
T ss_pred HHHHHHHH-CCEEEEEeCCC-ccCCC------CCCeEEEEECCCCChHHHHHHHcCC
Confidence 34566677 89999998733 22221 123566666 457788999998763
No 183
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=43.99 E-value=25 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.4
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. ++-++|+++|++.|++|+-+
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~eV~D~ 32 (141)
T PRK12613 2 AIILGADAHGNALKELIKSFLQEEGYDIIDV 32 (141)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 589999976 46888999999989999866
No 184
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=43.96 E-value=55 Score=30.25 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CC------chHHHHHHHhhcCeeeecc
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQ------SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~------~~~vDl~Il~~A~~FIGNc 95 (132)
.++.++..|+++++.. ..|.|.+......++|.+.|...|+++..+ .+ ..++...--+..++.||+.
T Consensus 431 q~~~L~~~L~~~~~~g---~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~ 504 (652)
T PRK05298 431 QVDDLLSEIRKRVAKG---ERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (652)
T ss_pred cHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC
Confidence 3556777777776643 678888888888999999998877766554 21 2233333345566665543
No 185
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=43.82 E-value=66 Score=22.08 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=31.7
Q ss_pred cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 17 VATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 17 ~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
+|-..-++||.++|...|.+...+. +.+-.||..|.+
T Consensus 7 eLdd~~~yPs~e~i~~aIE~YC~~~-~~~l~Fisr~~P 43 (74)
T PF14201_consen 7 ELDDSPKYPSKEEICEAIEKYCIKN-GESLEFISRDKP 43 (74)
T ss_pred EcccCCCCCCHHHHHHHHHHHHHHc-CCceEEEecCCc
Confidence 3445568999999999999999998 999999998775
No 186
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=43.72 E-value=72 Score=26.90 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEE
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRI 71 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~v 71 (132)
.+++++.+.+++. +.++++|-||..- +.+++.+.|+..++++
T Consensus 17 g~~~~l~~~l~~~-~~~~~livtd~~~~~~~~~~v~~~L~~~gi~~ 61 (358)
T PRK00002 17 GLLSELGELLAPL-KGKKVAIVTDETVAPLYLEKLRASLEAAGFEV 61 (358)
T ss_pred ChHHHHHHHHHhc-CCCeEEEEECCchHHHHHHHHHHHHHhcCCce
Confidence 4566777777776 6789999998653 6788888898766543
No 187
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=43.66 E-value=98 Score=25.10 Aligned_cols=35 Identities=9% Similarity=0.206 Sum_probs=21.7
Q ss_pred HHHHHhhcCeeeecceeecchhhhhhhhcCCCCC-CcccCC
Q psy9357 81 DLAILSQANHFIGNCISSFTAFVKRHRDVKGLPS-SFWAFP 120 (132)
Q Consensus 81 Dl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps-~F~g~~ 120 (132)
=.+++++||.||||- |+-... =-+.|.|+ .+||-.
T Consensus 245 l~ali~~a~l~I~~D----SGp~Hl-AaA~~~P~i~lfG~t 280 (334)
T TIGR02195 245 AVDLIALAKAVVTND----SGLMHV-AAALNRPLVALYGST 280 (334)
T ss_pred HHHHHHhCCEEEeeC----CHHHHH-HHHcCCCEEEEECCC
Confidence 346889999999996 232222 24666665 556543
No 188
>KOG2872|consensus
Probab=43.40 E-value=34 Score=29.85 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=40.5
Q ss_pred cccccCCCHHHHHHHHHHHHHHh--CCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 19 TEELCFPSVETVVRQLKRVVREH--GQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~--~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
..+-|+|=+++|++++|.-+.+. ..+--++.|.++-.-+++| ...|.+||.|
T Consensus 225 f~e~s~PYl~~I~~~Vk~rl~~~~~~~vPmi~fakG~g~~Le~l----~~tG~DVvgL 278 (359)
T KOG2872|consen 225 FEEFSLPYLRQIAEAVKKRLPELGLAPVPMILFAKGSGGALEEL----AQTGYDVVGL 278 (359)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhcCCCCceEEEEcCcchHHHHH----HhcCCcEEee
Confidence 34569999999999999888875 2345677799998888884 4568888887
No 189
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=43.38 E-value=1.1e+02 Score=27.61 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=27.4
Q ss_pred CCcEEEEecC--CcccHHHHHHhhccCCc--E-EEeC-CCchHHHHHH-HhhcCeeeecce
Q psy9357 43 QIKYIFVATD--NNNLNEPLKEAFKRTEI--R-IVPS-DQSPHVDLAI-LSQANHFIGNCI 96 (132)
Q Consensus 43 ~lk~VfIaTD--~~~~~~eLk~~l~~~~~--~-vv~l-~~~~~vDl~I-l~~A~~FIGNcv 96 (132)
|+.-|.|.|+ +..|-++|++.|....+ + .|.. +|--++..+| -..+|.+|||.-
T Consensus 386 Gmepv~v~~~~~~~~~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l~~~l~~~~~DlliG~s~ 446 (515)
T TIGR01286 386 GCEPVHILCTNGTKRWKAEMKALLAASPYGQNATVWIGKDLWHLRSLVFTEPVDFLIGNSY 446 (515)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhcCCCCCccEEEeCCCHHHHHHHHhhcCCCEEEECch
Confidence 5555555553 22355556655543211 1 1112 4444444444 337999999863
No 190
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=43.11 E-value=1e+02 Score=24.78 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=38.6
Q ss_pred cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcCe
Q psy9357 17 VATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQANH 90 (132)
Q Consensus 17 ~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~~ 90 (132)
.+..-.=.||++++++.|.+ +. |.+-+-|+||+.. -..+|++.+.+.+-.+.-+ --.--+--.++.++|+
T Consensus 80 Al~~v~~~~sle~a~~~I~~---~~-G~~P~~v~TsAr~~~~~is~~~lr~~l~~~~~P~LllFGTGwGL~~ev~~~~D~ 155 (185)
T PF09936_consen 80 ALSLVRVVDSLEEAIEDIEE---EE-GKRPLLVATSARKYPNTISYAELRRMLEEEDRPVLLLFGTGWGLAPEVMEQCDY 155 (185)
T ss_dssp HHTTEEEESSHHHHHHHHHH---HH-SS--EEEE--SS--SS-B-HHHHHHHHHH--S-EEEEE--TT---HHHHTT-SE
T ss_pred HHhHhccHhhHHHHHHHHHH---Hh-CCCCEEEEecCcCCCCCcCHHHHHHHHhccCCeEEEEecCCCCCCHHHHHhcCe
Confidence 44455567999999888875 33 6788899999773 4788999985433333332 2233344456667776
Q ss_pred ee
Q psy9357 91 FI 92 (132)
Q Consensus 91 FI 92 (132)
+.
T Consensus 156 iL 157 (185)
T PF09936_consen 156 IL 157 (185)
T ss_dssp EB
T ss_pred eE
Confidence 64
No 191
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=42.99 E-value=86 Score=25.24 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc-----ccHHHHHHhhccCCcEEEeC--CC---chHHHHHHHhhcCeee
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN-----NLNEPLKEAFKRTEIRIVPS--DQ---SPHVDLAILSQANHFI 92 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~-----~~~~eLk~~l~~~~~~vv~l--~~---~~~vDl~Il~~A~~FI 92 (132)
.+.+++....+-.|++|+|.|.-|.. ..+++++++.+..|++++.. ++ .+..-..+..+.|.++
T Consensus 116 ~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~ 189 (294)
T PF04392_consen 116 PIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALY 189 (294)
T ss_dssp -HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEE
T ss_pred CHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEE
Confidence 44455555545446789997666433 26888999988889888765 44 2222233445666444
No 192
>COG0550 TopA Topoisomerase IA [DNA replication, recombination, and repair]
Probab=42.99 E-value=31 Score=31.79 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccH----HHHHHhhcc
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLN----EPLKEAFKR 66 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~----~eLk~~l~~ 66 (132)
.+.++.+++...+ +++.||+|||.+.+= -+|.+.|+.
T Consensus 63 k~~~v~~lk~~ak---~ad~v~lAtD~DREGE~I~~~i~~~l~~ 103 (570)
T COG0550 63 KKKVVKKLKKLAK---KADEVYLATDPDREGEAIGWHILEVLKL 103 (570)
T ss_pred hHHHHHHHHHHhc---cCCEEEECCCCCcchHHHHHHHHHHhCc
Confidence 5667777776655 689999999998742 345555554
No 193
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=42.82 E-value=68 Score=21.73 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCCcEEEe
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~~~vv~ 73 (132)
..+++++++++++.+. +.|||.. .+- ..+.+|+..|+..+.++..
T Consensus 5 ~K~~~v~~~~~~l~~~---~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v 52 (100)
T PF00466_consen 5 KKEEIVEELKELLKKS---KYVIVVDYNGLSANQLQELRKELRKKGGKFKV 52 (100)
T ss_dssp HHHHHHHHHHHHHHCS---SEEEEEECTTSCHHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHHhC---CEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEE
Confidence 3578899999999965 7999987 433 3789999999886654443
No 194
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=42.70 E-value=24 Score=29.91 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=29.6
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
.--+++.++|+++|+++.+-. +++.|+|++|.-
T Consensus 279 ~~~lE~~e~I~~rI~~a~~~v-~~~~l~lspdCG 311 (339)
T PRK09121 279 SDTIETPEEVADTLRKALQFV-DADKLYPCTNCG 311 (339)
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CHHHEEECCCCC
Confidence 446899999999999999998 899999999865
No 195
>cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=42.51 E-value=23 Score=27.59 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=24.2
Q ss_pred EEEecCCcccHHHHHHhhccCCcEEEeCC
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTEIRIVPSD 75 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~~~vv~l~ 75 (132)
+++||-|.+-+.|++..|...+++++.++
T Consensus 1 i~~aT~N~~K~~E~~~il~~~~i~v~~~~ 29 (183)
T cd00515 1 IVFATGNKGKLKEFKEILAPFGIEVVSLK 29 (183)
T ss_pred CEEECCCHHHHHHHHHHHhhcCcEEEEcC
Confidence 47899999999999999987778877653
No 196
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=42.18 E-value=48 Score=25.00 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=18.4
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCc
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEI 69 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~ 69 (132)
++.-|+|+.|.+ .++.++.++++++
T Consensus 65 ~~~vV~Vs~D~~--~~~~~~f~~~~~~ 89 (146)
T cd03008 65 QLALVYVSMDQS--EQQQESFLKDMPK 89 (146)
T ss_pred CEEEEEEECCCC--HHHHHHHHHHCCC
Confidence 688999998865 3557777877663
No 197
>PRK14826 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=42.14 E-value=29 Score=28.07 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=26.5
Q ss_pred CcEEEEecCCcccHHHHHHhhccC--CcEEEeC
Q psy9357 44 IKYIFVATDNNNLNEPLKEAFKRT--EIRIVPS 74 (132)
Q Consensus 44 lk~VfIaTD~~~~~~eLk~~l~~~--~~~vv~l 74 (132)
-..|++||.|.+-+.|++..|... +++|+++
T Consensus 8 ~~~i~~aT~N~~K~~E~~~iL~~~~~~i~v~~~ 40 (222)
T PRK14826 8 TITIVLATGNRDKVRELRPLLEHISPLFSVRSL 40 (222)
T ss_pred CCEEEEEcCChhHHHHHHHHHHhcCCCeEEEeh
Confidence 467999999999999999999865 5788774
No 198
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=41.72 E-value=35 Score=29.18 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=29.7
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
.-++|+.++|...|++.++.. +...+||.+|.-
T Consensus 272 ~~~ve~~eei~~~i~k~~~~~-~~e~~~vnPDCG 304 (330)
T COG0620 272 SPKVESVEEIAARIRKALERV-PPERLYVNPDCG 304 (330)
T ss_pred CCCcCCHHHHHHHHHHHHHhC-ChheEEEcCCCC
Confidence 448999999999999999999 899999999853
No 199
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=41.31 E-value=46 Score=22.29 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCc-EEEEecCCcccH--HHHHHhhccCCcEEEeC-CC
Q psy9357 25 PSVETVVRQLKRVVREHGQIK-YIFVATDNNNLN--EPLKEAFKRTEIRIVPS-DQ 76 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk-~VfIaTD~~~~~--~eLk~~l~~~~~~vv~l-~~ 76 (132)
++.+.+++.+++.+... +.. -..|-||+.... ..++++++..+++++.. |+
T Consensus 47 ~~~~~~~~~l~~~~~~~-~~~~p~~i~tD~g~~f~~~~~~~~~~~~~i~~~~~~~~ 101 (120)
T PF00665_consen 47 ETAEAALRALKRAIEKR-GGRPPRVIRTDNGSEFTSHAFEAWCKHLGIKHVFTPPY 101 (120)
T ss_dssp SHHHHHHHHHHHHHHHH-S-SE-SEEEEESCHHHHSHHHHHHHHHHT-EEEESSTS
T ss_pred ccccccccccccccccc-ccccceecccccccccccchhhhHHHHcCceEeeCCCC
Confidence 67889999999999988 554 567789988643 47888888878887766 44
No 200
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.31 E-value=99 Score=26.84 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=10.8
Q ss_pred HHHHHhhcCeeeecce
Q psy9357 81 DLAILSQANHFIGNCI 96 (132)
Q Consensus 81 Dl~Il~~A~~FIGNcv 96 (132)
+++--.++|.+||+-.
T Consensus 371 ~~i~~~~pDliiG~s~ 386 (435)
T cd01974 371 SLLFTEPVDLLIGNTY 386 (435)
T ss_pred HHHhhcCCCEEEECcc
Confidence 4444446999999863
No 201
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=41.19 E-value=1e+02 Score=24.08 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhh
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAF 64 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l 64 (132)
+|+..+.+++++.. =.||||| |....+.+|-+..
T Consensus 32 f~ev~e~iqeL~d~-------V~i~IASgDr~gsl~~lae~~ 66 (152)
T COG4087 32 FSEVSETIQELHDM-------VDIYIASGDRKGSLVQLAEFV 66 (152)
T ss_pred cHhhHHHHHHHHHh-------heEEEecCCcchHHHHHHHHc
Confidence 56666666666544 3689999 7777777776665
No 202
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=41.08 E-value=97 Score=20.02 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhC---CCcEEEEecCCcccHHHHHHhhccC--CcEEEeC
Q psy9357 30 VVRQLKRVVREHG---QIKYIFVATDNNNLNEPLKEAFKRT--EIRIVPS 74 (132)
Q Consensus 30 I~~~ik~~~~~~~---~lk~VfIaTD~~~~~~eLk~~l~~~--~~~vv~l 74 (132)
....+++..+++. +++-|+|+.|.+ .++.++.+++. .|..+..
T Consensus 19 ~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~~~~~~~~~~~ 66 (95)
T PF13905_consen 19 ELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKKNNFPWYNVPF 66 (95)
T ss_dssp HHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHTCTTSSEEEET
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHhcCCCceEEee
Confidence 4455555555553 788999999844 56677777765 4655554
No 203
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=41.01 E-value=29 Score=26.45 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=24.4
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. +.-++|+++|+..|++|+-+
T Consensus 2 kI~IgsDh~G~~lK~~i~~~L~~~G~eV~D~ 32 (141)
T TIGR01118 2 AIIIGSDLAGKRLKDVIKNFLVDNGFEVIDV 32 (141)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 589999976 46888999999889999866
No 204
>KOG1482|consensus
Probab=40.96 E-value=9.6 Score=33.65 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhh
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l 64 (132)
=.+..+.+++.-+ ++.++-|+||+.|.+..+....
T Consensus 82 ~l~fm~~E~vGg~-~a~SLAImTDAaHlLsD~~sf~ 116 (379)
T KOG1482|consen 82 CLVFMIGEVVGGY-KANSLAIMTDAAHLLSDVASFI 116 (379)
T ss_pred HHHHHHHHHhCCe-eccchhhhhcchHHHHHHHHHH
Confidence 3445566666666 9999999999999888877644
No 205
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.84 E-value=87 Score=23.63 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCc-ccHHHHHHhhccCCcEEEeC--CC--chHHHHHHHhhcCeeeeccee
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNN-NLNEPLKEAFKRTEIRIVPS--DQ--SPHVDLAILSQANHFIGNCIS 97 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~-~~~~eLk~~l~~~~~~vv~l--~~--~~~vDl~Il~~A~~FIGNcvS 97 (132)
+|.-+|++.+..+. ++ +-+-.+|...+. ..+..+.+.|. ..++...+ ++ ...|+++...-.|++||....
T Consensus 61 ~s~~Dil~al~~a~-~~-~~~Iavv~~~~~~~~~~~~~~ll~-~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~ 135 (176)
T PF06506_consen 61 ISGFDILRALAKAK-KY-GPKIAVVGYPNIIPGLESIEELLG-VDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVV 135 (176)
T ss_dssp --HHHHHHHHHHCC-CC-TSEEEEEEESS-SCCHHHHHHHHT--EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHH
T ss_pred CCHhHHHHHHHHHH-hc-CCcEEEEecccccHHHHHHHHHhC-CceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHH
Confidence 46678888888766 33 555566666544 46899999993 24444444 22 788999999999999999854
No 206
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=40.62 E-value=1e+02 Score=25.45 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=38.8
Q ss_pred HHHHHHHHHHH--HhCCCcEEEEecCCcccHHHHHHhhccCCc-EEEeC--CC---ch-HHHHHHHh-hcCeeeecce
Q psy9357 29 TVVRQLKRVVR--EHGQIKYIFVATDNNNLNEPLKEAFKRTEI-RIVPS--DQ---SP-HVDLAILS-QANHFIGNCI 96 (132)
Q Consensus 29 ~I~~~ik~~~~--~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~-~vv~l--~~---~~-~vDl~Il~-~A~~FIGNcv 96 (132)
.+++++.+.++ .. +.++++|-||..- .+++.+.|+..++ .+... +. .. ..+.+... ++|..||=|-
T Consensus 9 g~l~~l~~~l~~~~~-~~~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG 84 (331)
T cd08174 9 GAIARLGELLSDRNP-NFGRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG 84 (331)
T ss_pred CHHHHHHHHHHHHHh-cCCceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC
Confidence 35566666666 33 4588999998765 6677777766554 33333 22 22 23333333 5888886543
No 207
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=40.55 E-value=32 Score=26.48 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
.+++++.+.++++.- -.++|+|++..++.++.+.+.+.|+++.
T Consensus 135 ~~~~l~~i~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 135 QPEFLALYARKLKPG---GEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CHHHHHHHHHHcCCC---CEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 467788888877753 5688888999999999999988777655
No 208
>PRK01207 methionine synthase; Provisional
Probab=40.04 E-value=42 Score=29.05 Aligned_cols=34 Identities=6% Similarity=0.052 Sum_probs=29.5
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
.--+|+.++|.+.|+++++.+.+...|||.+|.-
T Consensus 283 s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCG 316 (343)
T PRK01207 283 IDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCG 316 (343)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCC
Confidence 4478999999999999999872489999999965
No 209
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=39.92 E-value=49 Score=27.79 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEeC-C------CchHHHHH
Q psy9357 30 VVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVPS-D------QSPHVDLA 83 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~l-~------~~~~vDl~ 83 (132)
.-..+..++.++ +-.+|||++ .+=+.++.+-+.|++.+++-|++ | +-+..||+
T Consensus 154 ~YacLd~~~~~~-~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMa 214 (265)
T COG4822 154 AYACLDHVLDEY-GFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMA 214 (265)
T ss_pred HHHHHHHHHHhc-CCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhc
Confidence 335577788887 899999999 77788999999999888866765 3 46778887
No 210
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=39.67 E-value=39 Score=32.03 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
..-.+|+.++|+++|+++++-+ +++.|+|.+|..
T Consensus 696 ~s~~ves~eei~~rI~~a~~~v-~~e~l~v~PdCG 729 (758)
T PRK05222 696 HSPRVPSVEEIEELLRKALEVI-PAERLWVNPDCG 729 (758)
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-ChheEEEeCCCC
Confidence 3557999999999999999999 899999999964
No 211
>TIGR00042 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family. Saccharomyces cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine, which can be a natural product of monooxygenase activity on adenine. Methanococcus jannaschii MJ0226 and E. coli RdgB are also characterized as pyrophosphatases active against non-standard purines NTPs. E. coli RdgB appears to act by intercepting non-canonical deoxyribonucleotide triphosphates from replication precursor pools.
Probab=39.58 E-value=32 Score=26.87 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=23.9
Q ss_pred EEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+++||.|.+-+.|++..|...++.++.+
T Consensus 2 i~~aT~N~~K~~E~~~il~~~~~~~~~~ 29 (184)
T TIGR00042 2 IVFATGNPGKLKEVQSILSDLGDNEIEQ 29 (184)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEec
Confidence 7899999999999999998777766654
No 212
>PRK09191 two-component response regulator; Provisional
Probab=39.22 E-value=1.7e+02 Score=22.22 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhC--CCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 28 ETVVRQLKRVVREHG--QIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~--~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
..+..++.+.++.++ -...|.|..|+......|+..|+..++.++.
T Consensus 119 ~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~~l~~~L~~~~~~~~~ 166 (261)
T PRK09191 119 AEAEALLDDARAEIARQVATRVLIIEDEPIIAMDLEQLVESLGHRVTG 166 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHHhcCCCEEEE
Confidence 455555555555541 3347888888888899999999877777663
No 213
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=39.22 E-value=46 Score=29.08 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=56.0
Q ss_pred cEEEEecCCc--ccHHHHHHhhccCCcEEEeC-CC-chHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC---CCcc
Q psy9357 45 KYIFVATDNN--NLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP---SSFW 117 (132)
Q Consensus 45 k~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p---s~F~ 117 (132)
++|=|.-+.+ ..+.||++.|+.+|++++.. +. ...=|+.-+.+|..=|--|-.+.....+...+..|.| ..|+
T Consensus 198 ~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~ 277 (456)
T TIGR01283 198 HDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFY 277 (456)
T ss_pred CcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCC
Confidence 3455444322 24679999999999999875 55 4577777999999999877767667777777788877 4678
Q ss_pred cCC
Q psy9357 118 AFP 120 (132)
Q Consensus 118 g~~ 120 (132)
|+.
T Consensus 278 G~~ 280 (456)
T TIGR01283 278 GIE 280 (456)
T ss_pred cHH
Confidence 875
No 214
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=39.16 E-value=37 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=24.5
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. +.-+.|+++|+..|++|+-+
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (142)
T PRK08621 2 AIIIGADKAGFELKEVVKDYLEDNKYEVVDV 32 (142)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCCEEEEC
Confidence 589999976 46788999999889999876
No 215
>KOG2299|consensus
Probab=39.14 E-value=46 Score=28.50 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec--CCcccHHHHHHhhccCCcEEEe
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT--DNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT--D~~~~~~eLk~~l~~~~~~vv~ 73 (132)
-|.+.+..-|++++..-.++..|||=| |...+.+.|.+.|+...+.|-+
T Consensus 120 vshdsam~LI~~v~~~gvnvteiyVDTVGpp~~Yq~kLek~FP~~k~tV~k 170 (301)
T KOG2299|consen 120 VSHDSAMGLIDEVLDQGVNVTEIYVDTVGPPAKYQEKLEKRFPGIKFTVTK 170 (301)
T ss_pred hhhHHHHHHHHHHHHhCCceEEEEEecCCChHHHHHHHHhhCCCeEEEEee
Confidence 355666667777777755899999999 5667999999999754444433
No 216
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=39.05 E-value=26 Score=30.01 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=30.7
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
+..-.+++.++|+++|+++.+-. +++.|+|++|.-
T Consensus 304 ~~~~~vE~~e~I~~rI~~a~~~v-~~~~l~lspdCG 338 (368)
T PRK06520 304 TKNGELENADDVKARLAEAAKFV-PLEQLCLSPQCG 338 (368)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CHHHEeeCcccC
Confidence 34567899999999999999998 899999999854
No 217
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=39.05 E-value=63 Score=23.53 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEec----CCc--ccH--HHH-HHhhccCCcEEE
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVAT----DNN--NLN--EPL-KEAFKRTEIRIV 72 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaT----D~~--~~~--~eL-k~~l~~~~~~vv 72 (132)
..+-.+++.+...- ++..|++|| +.+ +++ +|+ |+....++++||
T Consensus 42 rlvpn~~k~lk~~e-gaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv 94 (101)
T COG5561 42 RLVPNQIKQLKGKE-GAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVV 94 (101)
T ss_pred chhHHHHHHHhhcc-ccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEE
Confidence 44556666665555 799999998 422 366 888 777777888887
No 218
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=39.05 E-value=1.1e+02 Score=22.13 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCCc--EEEe
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTEI--RIVP 73 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~~--~vv~ 73 (132)
..+++++++++++++. +.|||.. .+- ..+.+|++.|+..+. .|++
T Consensus 2 ~K~~~v~~l~~~l~~~---~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~K 51 (155)
T cd00379 2 KKEELVEELKELLKKY---KSVVVVDYRGLTVAQLTELRKELRESGAKLKVGK 51 (155)
T ss_pred chHHHHHHHHHHHHhC---CEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEe
Confidence 3578899999999976 8888888 433 478899999987654 5554
No 219
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=38.78 E-value=1.4e+02 Score=25.30 Aligned_cols=93 Identities=5% Similarity=-0.002 Sum_probs=60.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CCC----c--------hH
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SDQ----S--------PH 79 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~~----~--------~~ 79 (132)
|--+..|+-..-++.+-++++.. +-+.|-|..+.+. ..+.+++++++.|+.|+. ++. . ++
T Consensus 148 ~ffRt~p~D~~qa~ai~~li~~~-~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~ 226 (403)
T cd06361 148 SFLRTVPSDFYQTKAMAHLIKKS-GWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTT 226 (403)
T ss_pred CeeECCCchHhHHHHHHHHHHHc-CCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHH
Confidence 34456677777788888888888 8899888875444 477788888888887764 222 1 11
Q ss_pred HHHHHHhhcCeeeecceeecchhhhhhhhcCCC
Q psy9357 80 VDLAILSQANHFIGNCISSFTAFVKRHRDVKGL 112 (132)
Q Consensus 80 vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ 112 (132)
+.+.-...||++|--+-..-...+-++=..+|.
T Consensus 227 ~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~ 259 (403)
T cd06361 227 EKIIEENKVNVIVVFARQFHVFLLFNKAIERNI 259 (403)
T ss_pred HHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCC
Confidence 112233579999876665555666555444454
No 220
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=38.68 E-value=74 Score=27.38 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEec-CCcc--cHHHHHHhhccCC-cEEEe-------C---CC-c--hHHHHH---HHh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVAT-DNNN--LNEPLKEAFKRTE-IRIVP-------S---DQ-S--PHVDLA---ILS 86 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~--~~~eLk~~l~~~~-~~vv~-------l---~~-~--~~vDl~---Il~ 86 (132)
..+.+++|++.+.++ ++|||.. |+-. .+.++|+.|+... +.+-+ + .+ . ..+.-. |+.
T Consensus 8 K~~~v~~l~~~l~~y---~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~ 84 (323)
T PTZ00240 8 KREYEERLVDCLTKY---SCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCE 84 (323)
T ss_pred HHHHHHHHHHHHHhC---CEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhcc
Confidence 678899999999998 8999999 8654 7999999998532 22222 1 11 1 113322 333
Q ss_pred hcCeeeecceeecch
Q psy9357 87 QANHFIGNCISSFTA 101 (132)
Q Consensus 87 ~A~~FIGNcvSSFTa 101 (132)
-++|.-||+-==||-
T Consensus 85 ~~~~l~GnvgliFTn 99 (323)
T PTZ00240 85 EKNLLSGNTGLIFTN 99 (323)
T ss_pred ccccccCCEEEEEeC
Confidence 358999998766664
No 221
>PRK00654 glgA glycogen synthase; Provisional
Probab=38.68 E-value=1.3e+02 Score=25.92 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcCeeeecceeecchhhhh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQANHFIGNCISSFTAFVKR 105 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~r 105 (132)
++.+++.++++.++ +++-|.+..+...+.++|++.-++.+.+++.+ .....+-..+++.||+|+=....==...+..
T Consensus 297 ~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~l 374 (466)
T PRK00654 297 LDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQL 374 (466)
T ss_pred hHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHH
Confidence 44556666555443 56666665543334455555544434333322 2222222468899999985422111123455
Q ss_pred hhhcCCCC
Q psy9357 106 HRDVKGLP 113 (132)
Q Consensus 106 eR~~~G~p 113 (132)
|=+..|.|
T Consensus 375 EAma~G~p 382 (466)
T PRK00654 375 YALRYGTL 382 (466)
T ss_pred HHHHCCCC
Confidence 55666654
No 222
>TIGR01051 topA_bact DNA topoisomerase I, bacterial. This model describes DNA topoisomerase I among the members of bacteria. DNA topoisomerase I transiently cleaves one DNA strand and thus relaxes negatively supercoiled DNA during replication, transcription and recombination events.
Probab=38.25 E-value=49 Score=30.36 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
.|+..++++.|+..++ ++..|++|||++.+ ..++-++++
T Consensus 53 ~~~~~~~~~~i~~l~~---~~d~ii~AtD~DrEGE~I~~~i~~~~~ 95 (610)
T TIGR01051 53 SKGKKKVVKELKTLAK---KADEVYLATDPDREGEAIAWHLAEVLK 95 (610)
T ss_pred cccHHHHHHHHHHHHh---cCCEEEECCCCCcchhHHHHHHHHHhC
Confidence 3666777777887775 56899999999973 344666665
No 223
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=38.15 E-value=42 Score=25.53 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCC
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTE 68 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~ 68 (132)
+.+++.+.++++.- -.++++||...+.+++.++|...+
T Consensus 112 ~~~l~~~~r~Lkpg---G~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 112 PHFLKEYANVLKKG---GVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred HHHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHhCC
Confidence 56888888888864 468899999998888888887643
No 224
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=38.15 E-value=68 Score=24.75 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeCC
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSD 75 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~ 75 (132)
+++.|+++.+.+..-..-.+.|++.|++|+.++
T Consensus 122 gI~rVvy~~~~~~~~~~~~~~L~~~Gi~v~~~~ 154 (168)
T PHA02588 122 GIKKLVYCEKYDRNGPGWDDILRKSGIEVIQIP 154 (168)
T ss_pred CCCEEEEeeccCCCcHHHHHHHHHCCCEEEEeC
Confidence 899999998654443444567778899988763
No 225
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=38.13 E-value=1.1e+02 Score=26.50 Aligned_cols=61 Identities=13% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCcEEEEec-CCcc-------c----HHHHHHhhccCCcEEEeC-CC----chHHHHHHHhhcCeeeec
Q psy9357 32 RQLKRVVREHGQIKYIFVAT-DNNN-------L----NEPLKEAFKRTEIRIVPS-DQ----SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaT-D~~~-------~----~~eLk~~l~~~~~~vv~l-~~----~~~vDl~Il~~A~~FIGN 94 (132)
+++-+.++.+ +|+.|-|-+ |.+. . +.+|++.-+ +..|-.| || ..+++..+-++-|+|==|
T Consensus 103 ~rvAeaV~~m-gLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P--~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHN 179 (306)
T COG0320 103 ERVAEAVKDM-GLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNP--QTTIEVLTPDFRGNDDALEIVADAGPDVFNHN 179 (306)
T ss_pred HHHHHHHHHh-CCCeEEEEeeccccccccchHHHHHHHHHHHhhCC--CceEEEeCccccCCHHHHHHHHhcCcchhhcc
Confidence 4566777888 999999998 6654 2 344444443 3555556 66 788999999999998776
Q ss_pred c
Q psy9357 95 C 95 (132)
Q Consensus 95 c 95 (132)
-
T Consensus 180 v 180 (306)
T COG0320 180 V 180 (306)
T ss_pred c
Confidence 5
No 226
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=38.00 E-value=47 Score=24.91 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=19.4
Q ss_pred HhhcCeeeecceeecchhhhhhhhcCCCC
Q psy9357 85 LSQANHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 85 l~~A~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
-++|||+||-|-+-=-+-..+-=-++|..
T Consensus 42 ~G~aDYY~GACnTGgGgALamAIallG~~ 70 (117)
T PF10941_consen 42 SGQADYYLGACNTGGGGALAMAIALLGYG 70 (117)
T ss_pred cCCcCEeEeecCCCccHHHHHHHHHhCcc
Confidence 47899999999776544444444555543
No 227
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=37.93 E-value=1.6e+02 Score=25.53 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=9.8
Q ss_pred HHhhcCeeeeccee
Q psy9357 84 ILSQANHFIGNCIS 97 (132)
Q Consensus 84 Il~~A~~FIGNcvS 97 (132)
--..+|.+|||..-
T Consensus 369 ~~~~~dliiG~s~~ 382 (429)
T cd03466 369 KELKIDVLIGNSYG 382 (429)
T ss_pred HhcCCCEEEECchh
Confidence 33458999998643
No 228
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=37.92 E-value=72 Score=24.23 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecC-Ccc-----cHHHHHHhhccCCc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATD-NNN-----LNEPLKEAFKRTEI 69 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD-~~~-----~~~eLk~~l~~~~~ 69 (132)
-|-.+.|.++|++.++.. ++++|-|-+. ++. +-++=++.|+.+|+
T Consensus 38 cpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~Wt~d~it~~gr~~l~~~gi 88 (146)
T TIGR02159 38 CPALEVIRQDIRDAVRAL-GVEVVEVSTSLDPPWTTDWITEDAREKLREYGI 88 (146)
T ss_pred CchHHHHHHHHHHHHHhc-CCCeEEEeEeeCCCCChHHCCHHHHHHHHhcCc
Confidence 366889999999999998 8999998874 333 36677888877654
No 229
>PRK06233 hypothetical protein; Provisional
Probab=37.65 E-value=31 Score=29.57 Aligned_cols=35 Identities=3% Similarity=0.093 Sum_probs=30.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
+..-.+++.++|+++|+++.+-+ +++.|+|++|.-
T Consensus 307 ~~~~~vE~~e~I~~rI~~a~~~v-~~e~l~lspdCG 341 (372)
T PRK06233 307 SKFPELEDEDEIIARIDEATEYV-PLSNLALSTQCG 341 (372)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CHHHEEecCCCC
Confidence 34568999999999999999998 899999999854
No 230
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=37.43 E-value=49 Score=22.93 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=25.1
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc-ccHHHHHHhhccCCcEE
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNN-NLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~-~~~~eLk~~l~~~~~~v 71 (132)
.+|.-.+.+++++ +. + +.+++.|.+. .-.+++.+.|+.+|+.+
T Consensus 15 ~ipga~e~l~~L~---~~--g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 15 PIPGAVEALDALR---ER--G-KPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp E-TTHHHHHHHHH---HT--T-SEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred cCcCHHHHHHHHH---Hc--C-CCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 4566655555544 43 3 5666677555 45688888888887653
No 231
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=37.23 E-value=1.4e+02 Score=20.78 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCc---ccHHHHHHhhccCCcEEEeC
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNN---NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~---~~~~eLk~~l~~~~~~vv~l 74 (132)
++++..+++++.+++...-+.|.|.||=- ++-.-++...+...+++++-
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 67889999999998864589999999843 34444444444435677764
No 232
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=37.19 E-value=43 Score=24.11 Aligned_cols=37 Identities=5% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhh
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l 64 (132)
++.++||.+.+.++.++-.|..-||.+....||...|
T Consensus 59 ~~~i~Qi~kQL~KLidVikV~~l~~~~~v~~e~~~~~ 95 (96)
T PRK08178 59 DQRLEQMISQIEKLEDVLKVRRNQSDPTMFNKIAVFF 95 (96)
T ss_pred chHHHHHHHHHhCCcCEEEEEECCCchhHHHHHHHHh
Confidence 4566666666666556777777776666666666554
No 233
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=37.01 E-value=85 Score=22.98 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=24.6
Q ss_pred CCcEEEEecCCcc-c-HHHHHHhhccCCcEEEeCCC
Q psy9357 43 QIKYIFVATDNNN-L-NEPLKEAFKRTEIRIVPSDQ 76 (132)
Q Consensus 43 ~lk~VfIaTD~~~-~-~~eLk~~l~~~~~~vv~l~~ 76 (132)
+++-|+||.|.++ . ...+..+=+..++.++....
T Consensus 46 kakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~t 81 (122)
T PRK04175 46 IAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPS 81 (122)
T ss_pred CccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECC
Confidence 7999999999876 3 46777666666777655433
No 234
>PRK05776 DNA topoisomerase I; Provisional
Probab=36.76 E-value=49 Score=30.87 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccC-CcEEEe---------------C--CC---------
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRT-EIRIVP---------------S--DQ--------- 76 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~-~~~vv~---------------l--~~--------- 76 (132)
+.+++.|+++.+ +++.||+|||.+.+ -.++-+.+... .++.+. + .+
T Consensus 84 ~~~~~~lk~l~k---~ad~iiiAtD~DREGE~I~~~i~~~~~~~~~v~R~~fs~iT~~~I~~A~~n~~~~d~~l~~A~~a 160 (670)
T PRK05776 84 KKYYELLSSLSK---YADEFINACDYDIEGSVIGYLIIKYLGDPKKAKRMKFSALTKSDIRRAFRNLETLDYEMINAGIA 160 (670)
T ss_pred HHHHHHHHHHHh---cCCEEEECCCCChhHHHHHHHHHHHhCCCCCeeEEEEccCCHHHHHHHHhCccccchhHHHHHHH
Confidence 367777777775 67999999999973 22355555421 232222 1 11
Q ss_pred chHHHHHHHhh-----------c-----Ceeeecceeecc-hhhhhhhhcCCC-CCCcccCC
Q psy9357 77 SPHVDLAILSQ-----------A-----NHFIGNCISSFT-AFVKRHRDVKGL-PSSFWAFP 120 (132)
Q Consensus 77 ~~~vDl~Il~~-----------A-----~~FIGNcvSSFT-a~V~reR~~~G~-ps~F~g~~ 120 (132)
-..+|.+|+-. + -.=+|-|.|--- .-|.|||++..| |..||.+.
T Consensus 161 R~~lD~lvG~nlSr~lt~~~~~~~g~~~~lS~GRVQsptL~lVveRe~eI~~Fvp~~yw~i~ 222 (670)
T PRK05776 161 RHELDWLWGINVSRALMSSVRDASGKRVILSAGRVQSPTLKYVVEREIERNLFVPLPYFSVS 222 (670)
T ss_pred HHHHHHHHhHHHhHHHHHHhhhhcCCccceecceecCchhhHhHhhHHHHHcCCCCcceEEE
Confidence 23455544321 0 134555555433 345899999997 77899774
No 235
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=36.74 E-value=1.1e+02 Score=23.02 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCCc--EEEe
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTEI--RIVP 73 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~~--~vv~ 73 (132)
..+++++++++.+++. +.|||.. ++- ..+.+|++.|+..+. .|++
T Consensus 5 ~K~~~v~~l~~~l~~~---~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~K 54 (172)
T PRK00099 5 EKKEIVAELAEKLKKA---QSAVVADYRGLTVAQMTELRKKLREAGVEYKVVK 54 (172)
T ss_pred HHHHHHHHHHHHHHhC---CEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeh
Confidence 4678899999999976 8999888 433 368899999987654 5554
No 236
>PLN02846 digalactosyldiacylglycerol synthase
Probab=36.25 E-value=2.3e+02 Score=25.43 Aligned_cols=83 Identities=11% Similarity=0.186 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcCeeeecceeecchhhhh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQANHFIGNCISSFTAFVKR 105 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~r 105 (132)
++.+++.+..+.++.++++ +.|+=|. +..++|++..++.++.++.+ ... ..| .+...+|+|+=...+=--..+.-
T Consensus 243 ~~~Li~a~~~l~~~~~~~~-l~ivGdG-p~~~~L~~~a~~l~l~~~vf~G~~-~~~-~~~~~~DvFv~pS~~Et~g~v~l 318 (462)
T PLN02846 243 YKELLKLLHKHQKELSGLE-VDLYGSG-EDSDEVKAAAEKLELDVRVYPGRD-HAD-PLFHDYKVFLNPSTTDVVCTTTA 318 (462)
T ss_pred HHHHHHHHHHHHhhCCCeE-EEEECCC-ccHHHHHHHHHhcCCcEEEECCCC-CHH-HHHHhCCEEEECCCcccchHHHH
Confidence 4555666665555543544 4444443 45667777776666644334 221 122 48888899997777666677888
Q ss_pred hhhcCCCC
Q psy9357 106 HRDVKGLP 113 (132)
Q Consensus 106 eR~~~G~p 113 (132)
|=++.|.|
T Consensus 319 EAmA~G~P 326 (462)
T PLN02846 319 EALAMGKI 326 (462)
T ss_pred HHHHcCCc
Confidence 88999987
No 237
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=36.21 E-value=2.2e+02 Score=22.67 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=58.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhC-CCcEEEEecCCcc----cHHHHHHhhccC--CcEEEeC---C----C-chHHHHHHHh
Q psy9357 22 LCFPSVETVVRQLKRVVREHG-QIKYIFVATDNNN----LNEPLKEAFKRT--EIRIVPS---D----Q-SPHVDLAILS 86 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~-~lk~VfIaTD~~~----~~~eLk~~l~~~--~~~vv~l---~----~-~~~vDl~Il~ 86 (132)
...|+..+....+-++++... +.++|.+...... ..+.+++.|++. +++++.. + + .++|..+.-+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~ 194 (346)
T cd06330 115 RTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAA 194 (346)
T ss_pred EecCChHHHHHHHHHHHHHhCcCccEEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhc
Confidence 344667777777777776652 4788888884332 467788888876 4666642 1 2 6788888888
Q ss_pred hcCeeeeccee-ecchhhhhhhhc
Q psy9357 87 QANHFIGNCIS-SFTAFVKRHRDV 109 (132)
Q Consensus 87 ~A~~FIGNcvS-SFTa~V~reR~~ 109 (132)
.+|.+|-.+.. ....+++.-|..
T Consensus 195 ~~d~ii~~~~~~~~~~~~~~~~~~ 218 (346)
T cd06330 195 KPDAIFSSLWGGDLVTFVRQANAR 218 (346)
T ss_pred CCCEEEEecccccHHHHHHHHHhc
Confidence 99998876654 444566655543
No 238
>PRK14973 DNA topoisomerase I; Provisional
Probab=36.10 E-value=53 Score=32.10 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCccc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNL 56 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~ 56 (132)
|+.+.+++.|+.+++ ++..|++|||++.+
T Consensus 81 ~~~kk~~~~Ik~l~k---~ad~IiiAtD~DRE 109 (936)
T PRK14973 81 PTEKKIVGLIQKLAK---KADRVTIATDFDTE 109 (936)
T ss_pred CchHHHHHHHHHHHH---hCCEEEECCCCCcc
Confidence 445567777887776 56899999999974
No 239
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=35.52 E-value=35 Score=25.87 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=33.4
Q ss_pred EEEEecCCcccHHHHHHhhcc-CCcEEEeC--CCchHHHHHHHh-hcCeeeecc
Q psy9357 46 YIFVATDNNNLNEPLKEAFKR-TEIRIVPS--DQSPHVDLAILS-QANHFIGNC 95 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~-~~~~vv~l--~~~~~vDl~Il~-~A~~FIGNc 95 (132)
+||.+++-..++++|.+.|++ .|++|.-. +....++++.-+ ++|+||+.-
T Consensus 2 ~V~~~~~~~~~~~~l~~~f~~~~g~~v~v~~~~s~~~~~~l~~g~~~Dv~~~~~ 55 (230)
T PF13531_consen 2 TVYAASGLAPALEELAEAFEKQPGIKVEVSFGGSGELVRRLQAGKKPDVFIPAS 55 (230)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHCEEEEEEEECHHHHHHHHHTT-S-SEEEESS
T ss_pred EEEEcccHHHHHHHHHHHHHhccCCeEEEEECChHHHHHHHhcCCCceEEEECC
Confidence 466666767788889888864 35655433 556667766644 789999865
No 240
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=35.51 E-value=1.5e+02 Score=25.27 Aligned_cols=67 Identities=9% Similarity=0.033 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCC--cEEEEecCCcccHHHHHHhhccCCcEEEeC------CCchHHHHHH--H--h---hcCeeeec
Q psy9357 30 VVRQLKRVVREHGQI--KYIFVATDNNNLNEPLKEAFKRTEIRIVPS------DQSPHVDLAI--L--S---QANHFIGN 94 (132)
Q Consensus 30 I~~~ik~~~~~~~~l--k~VfIaTD~~~~~~eLk~~l~~~~~~vv~l------~~~~~vDl~I--l--~---~A~~FIGN 94 (132)
.+++|.+.++.. +. +.+.|-||..-+-+.+.+.|+..++++..+ |....||.++ + . .+|..||=
T Consensus 10 ~l~~l~~~~~~~-g~~~~~~lvvtd~~~~~~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIai 88 (347)
T cd08184 10 SFDQLNDLLAPK-RKNKDPAVFFVDDVFQGKDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGI 88 (347)
T ss_pred HHHHHHHHHHHc-CCCCCeEEEEECcchhhhHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEe
Confidence 456777777766 43 567776786655567777787655543322 3344444432 2 2 67988876
Q ss_pred cee
Q psy9357 95 CIS 97 (132)
Q Consensus 95 cvS 97 (132)
|--
T Consensus 89 GGG 91 (347)
T cd08184 89 GGG 91 (347)
T ss_pred CCc
Confidence 553
No 241
>KOG1975|consensus
Probab=35.45 E-value=43 Score=29.68 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=35.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEec--CCcccHHHHHHh
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVAT--DNNNLNEPLKEA 63 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT--D~~~~~~eLk~~ 63 (132)
|+-|.+.+-..++.+.+-+ +.--|||+| |++.-+..|+++
T Consensus 209 aFetee~ar~~l~Nva~~L-kpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 209 AFETEESARIALRNVAKCL-KPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred eeccHHHHHHHHHHHHhhc-CCCcEEEEecCcHHHHHHHHHhc
Confidence 7888999999999999999 888999999 777778888877
No 242
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=35.23 E-value=2.4e+02 Score=22.67 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHHh---CCCcEEEEecCCc------ccHHHHHHhhcc-CCc-EEEeC-CCchHHH-HHHHhhcCeee
Q psy9357 26 SVETVVRQLKRVVREH---GQIKYIFVATDNN------NLNEPLKEAFKR-TEI-RIVPS-DQSPHVD-LAILSQANHFI 92 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~---~~lk~VfIaTD~~------~~~~eLk~~l~~-~~~-~vv~l-~~~~~vD-l~Il~~A~~FI 92 (132)
.++.+++.++++.++. ++++-+++..+.. .+.++|++..++ .+. +-|.+ ...+.-+ -.++..||+|+
T Consensus 225 g~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l 304 (392)
T cd03805 225 NIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALL 304 (392)
T ss_pred ChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEE
Confidence 4566677777766553 3666666665322 245778887766 444 23333 3333333 35789999998
Q ss_pred ecceeecchhhhhhhhcCCCC
Q psy9357 93 GNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 93 GNcvSSFTa~V~reR~~~G~p 113 (132)
=....---..+--|=++.|.|
T Consensus 305 ~~s~~E~~g~~~lEAma~G~P 325 (392)
T cd03805 305 YTPSNEHFGIVPLEAMYAGKP 325 (392)
T ss_pred ECCCcCCCCchHHHHHHcCCC
Confidence 432221112344566677776
No 243
>PRK12483 threonine dehydratase; Reviewed
Probab=35.21 E-value=49 Score=30.06 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCccccccccCCCHHHHHHHHHHHHHHhCCCcE------------EE--Eec-CCcccHHHHHHhhccCCcEEEeC-CC-
Q psy9357 14 EYGVATEELCFPSVETVVRQLKRVVREHGQIKY------------IF--VAT-DNNNLNEPLKEAFKRTEIRIVPS-DQ- 76 (132)
Q Consensus 14 e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~------------Vf--IaT-D~~~~~~eLk~~l~~~~~~vv~l-~~- 76 (132)
+....+....+|+....++++...+... ++.. |+ |-| |.++.+++|.+.|++.|+++..+ ++
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~-ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g~~~~dlsdne 420 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR-QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQGFPVLDLTDDE 420 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc-CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCCCCeEECCCCH
Confidence 4557778889999999999988888764 3332 23 344 44445599999999989999888 33
Q ss_pred --chHHHHHHHhhcC
Q psy9357 77 --SPHVDLAILSQAN 89 (132)
Q Consensus 77 --~~~vDl~Il~~A~ 89 (132)
.-|+.-.|.||+.
T Consensus 421 ~~k~h~r~~~g~~~~ 435 (521)
T PRK12483 421 LAKLHIRHMVGGRAP 435 (521)
T ss_pred HHHHHHHhccCCCCC
Confidence 5677777777774
No 244
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=35.11 E-value=41 Score=25.75 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.0
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. +.-+.|+++|++.|++|+-+
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~eV~D~ 32 (148)
T PRK05571 2 KIAIGSDHAGFELKEEIIEHLEELGHEVIDL 32 (148)
T ss_pred EEEEEeCCchHHHHHHHHHHHHHCCCEEEEc
Confidence 589999976 46778999999888988876
No 245
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=35.11 E-value=1.3e+02 Score=26.25 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCcEEEEec--CCcccHHHHHHhhccCCcEEEeCCCc-hHHHHHHHhhcCeeeecceeecchhhhhhhhcC
Q psy9357 34 LKRVVREHGQIKYIFVAT--DNNNLNEPLKEAFKRTEIRIVPSDQS-PHVDLAILSQANHFIGNCISSFTAFVKRHRDVK 110 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaT--D~~~~~~eLk~~l~~~~~~vv~l~~~-~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~ 110 (132)
+-+.+.++ |++-|.++| ++..|.+++.+.+...+..+....+- .+++..-=-++|.+|||.- ..++.+. .
T Consensus 300 l~~~l~el-Gmevv~~~t~~~~~~~~~~~~~~~~~~~~~v~~~~dl~~~~~~l~~~~pDllig~s~---~~~~A~k---~ 372 (422)
T TIGR02015 300 VVRLLLES-GADVPYVGTAIPRTAWGAEDKRWLEMLGVEVKYRASLEDDMEAVLEFEPDLAIGTTP---LVQFAKE---H 372 (422)
T ss_pred HHHHHHHC-CCEEEEEecCCCCccccHHHHHHHHhcCCCceeccCHHHHHHHHhhCCCCEEEcCCc---chHHHHH---c
Confidence 33344445 666666666 33345555555554332222211221 2333332227999999932 3333332 5
Q ss_pred CCCCCcccCC
Q psy9357 111 GLPSSFWAFP 120 (132)
Q Consensus 111 G~ps~F~g~~ 120 (132)
|.|.-..||+
T Consensus 373 gIP~vr~g~p 382 (422)
T TIGR02015 373 GIPALYFTNL 382 (422)
T ss_pred CCCEEEecch
Confidence 7776555554
No 246
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=34.99 E-value=55 Score=31.19 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=35.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc---ccHHHHHHhhc
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN---NLNEPLKEAFK 65 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~---~~~~eLk~~l~ 65 (132)
..-.+|+.++|++.|+++.+-+ +++.|+|.+|.- .--++....|+
T Consensus 702 ~s~~ves~Eei~~rI~~a~~~v-~~e~l~vnPDCGl~tr~~~~~~~kL~ 749 (766)
T PLN02475 702 HSPRIPSTEEIADRINKMLAVL-ESNILWVNPDCGLKTRKYPEVKPALK 749 (766)
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CcceEEEcCCCCcccCCHHHHHHHHH
Confidence 3458999999999999999999 899999999964 22334444444
No 247
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=34.93 E-value=53 Score=25.29 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=25.0
Q ss_pred cEEEEecCCc--ccHHHHHHhhcc--CCcEEEeC
Q psy9357 45 KYIFVATDNN--NLNEPLKEAFKR--TEIRIVPS 74 (132)
Q Consensus 45 k~VfIaTD~~--~~~~eLk~~l~~--~~~~vv~l 74 (132)
.+|+|++|.. +.-++|+++|++ .|++|+-+
T Consensus 3 mkI~igsDhaG~~lK~~l~~~L~~~~~g~eV~D~ 36 (151)
T PTZ00215 3 KKVAIGSDHAGFDLKNEIIDYIKNKGKEYKIEDM 36 (151)
T ss_pred cEEEEEeCCchHHHHHHHHHHHHhccCCCEEEEc
Confidence 3699999976 467889999999 89999876
No 248
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=34.83 E-value=97 Score=26.78 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=16.5
Q ss_pred cEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
++++|+.|.+.-+. |-+.|.+.|.+++.
T Consensus 281 gkv~v~g~~~~~~~-la~~L~elGmevv~ 308 (416)
T cd01980 281 GRVLVSGYEGNELL-VARLLIESGAEVPY 308 (416)
T ss_pred ceEEEECCCchhHH-HHHHHHHcCCEEEE
Confidence 35777776665333 66666666665553
No 249
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.82 E-value=46 Score=28.05 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCcEEEEecCCccc----HHHHHHhhccC-C-cEEEeCC---CchHHHHHHHh
Q psy9357 43 QIKYIFVATDNNNL----NEPLKEAFKRT-E-IRIVPSD---QSPHVDLAILS 86 (132)
Q Consensus 43 ~lk~VfIaTD~~~~----~~eLk~~l~~~-~-~~vv~l~---~~~~vDl~Il~ 86 (132)
|+.-|.||||++.- -+.+.+.|+.+ | +..+++| |+-++|.-+..
T Consensus 57 GADlvlIATDaD~~GReLA~kf~eeLrg~VGhiERmK~PiGHDvEhiD~elvr 109 (290)
T COG4026 57 GADLVLIATDADRVGRELAEKFFEELRGMVGHIERMKIPIGHDVEHIDVELVR 109 (290)
T ss_pred cCCEEEEeecCcchhHHHHHHHHHHHHHhhhhhheeccCCCCCccccCHHHHH
Confidence 89999999999874 34445555543 2 5666664 48888887754
No 250
>PRK14825 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=34.69 E-value=46 Score=26.39 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=23.8
Q ss_pred cEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+.|++||.|.+-+.|++..|...+++|+.+
T Consensus 2 ~~i~~aT~N~~K~~E~~~il~~~~~~i~~~ 31 (199)
T PRK14825 2 KTLFFATTNINKINEVKQILDIPNIKIEIP 31 (199)
T ss_pred CeEEEECCChhHHHHHHHHHhhcCceEeec
Confidence 368999999999999999997545555443
No 251
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=34.61 E-value=2e+02 Score=22.94 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=34.2
Q ss_pred EEEEecCCcccHHHHHHhhccCC--cEEEeC-CCchHHHHH-HHhhcCeeeecceeecchhhhhhhhcCCCCC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTE--IRIVPS-DQSPHVDLA-ILSQANHFIGNCISSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~--~~vv~l-~~~~~vDl~-Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps 114 (132)
-++|....+...++|++.+.+.+ -+.+.+ ......|+. ++..||.||++. + -+.+|=...|.|.
T Consensus 232 ~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~S--g---gi~~Ea~~~g~Pv 299 (363)
T cd03786 232 VPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDS--G---GIQEEASFLGVPV 299 (363)
T ss_pred CEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcC--c---cHHhhhhhcCCCE
Confidence 34444433443445555444322 122222 222234553 467799999985 2 2667777788885
No 252
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=34.25 E-value=36 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=23.6
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. +.-++|+++|+..|++|+-+
T Consensus 1 kI~igsDhaG~~lK~~l~~~L~~~g~eV~D~ 31 (143)
T TIGR01120 1 KIAIGSDHAGFILKEEIKAFLVERGVKVIDK 31 (143)
T ss_pred CEEEEeCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 378999866 46778999999889988865
No 253
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=34.11 E-value=81 Score=23.33 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCcEEEEecCCcc----------cHHHHHHhhccCC--cEEEeCC--CchHHHHHHHhh
Q psy9357 43 QIKYIFVATDNNN----------LNEPLKEAFKRTE--IRIVPSD--QSPHVDLAILSQ 87 (132)
Q Consensus 43 ~lk~VfIaTD~~~----------~~~eLk~~l~~~~--~~vv~l~--~~~~vDl~Il~~ 87 (132)
.-|.|||+=|++. -+.+|..+|++.| +++++++ ..--||=+|+.+
T Consensus 67 ~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~KGiDD~l~~~ 125 (130)
T PF12965_consen 67 PGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGKGIDDLLAAK 125 (130)
T ss_pred CCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCCHhHHHHhc
Confidence 3489999999883 3567788888766 4556664 366677766654
No 254
>PRK00124 hypothetical protein; Validated
Probab=33.97 E-value=1.3e+02 Score=23.17 Aligned_cols=53 Identities=25% Similarity=0.139 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcC
Q psy9357 30 VVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQAN 89 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~ 89 (132)
+...|.++.+++ ++..++||+ .....++. ...++.+.. ......|.+|+.++.
T Consensus 12 Vk~~i~r~a~r~-~i~v~~Vas~n~~~~~~~------~~~v~~v~V~~g~D~AD~~Iv~~~~ 66 (151)
T PRK00124 12 VKDIIIRVAERH-GIPVTLVASFNHFLRVPY------SPFIRTVYVDAGFDAADNEIVQLAE 66 (151)
T ss_pred HHHHHHHHHHHH-CCeEEEEEeCCcccCCCC------CCceEEEEeCCCCChHHHHHHHhCC
Confidence 555666677787 999999996 33211110 012344444 335677888877653
No 255
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=33.68 E-value=1.4e+02 Score=19.96 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCcEEEEecCCcc-cHHH-HHHhhccCCcEEEeCC
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNN-LNEP-LKEAFKRTEIRIVPSD 75 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~-~~~e-Lk~~l~~~~~~vv~l~ 75 (132)
++.+.+++- .++-|++|.|.++ ...+ |...=++.++.++..+
T Consensus 22 ~v~k~l~~~-~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 22 EVLKALKKG-KAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHTT-CESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred HHHHHHHcC-CCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 444555554 8999999999776 4555 5554455577776653
No 256
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=33.65 E-value=1.3e+02 Score=25.31 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHH-HHHHhhcCeeeecceeecchhhh
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVD-LAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vD-l~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
.+.+|.+-|+.+.+.. ++.-||...-++..-..+.+.+++.. ++.-.+.....| +.++.+|++-|||. +=|+
T Consensus 198 ~~~~i~~~l~~L~~~~-~~~vi~~~hn~p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-----sGI~ 270 (346)
T PF02350_consen 198 RLEQILEALKALAERQ-NVPVIFPLHNNPRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDS-----SGIQ 270 (346)
T ss_dssp -HHHHHHHHHHHHHHT-TEEEEEE--S-HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESS-----HHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEecCCchHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcC-----ccHH
Confidence 4567777777777774 78899998877776777777776542 333333333333 45779999999995 2577
Q ss_pred hhhhcCCCCC
Q psy9357 105 RHRDVKGLPS 114 (132)
Q Consensus 105 reR~~~G~ps 114 (132)
+|=-..|.|.
T Consensus 271 eEa~~lg~P~ 280 (346)
T PF02350_consen 271 EEAPSLGKPV 280 (346)
T ss_dssp HHGGGGT--E
T ss_pred HHHHHhCCeE
Confidence 7777777775
No 257
>PRK04017 hypothetical protein; Provisional
Probab=33.63 E-value=43 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=20.1
Q ss_pred CCcEEEEecCCcccHHHH----HHhhccCCcEE
Q psy9357 43 QIKYIFVATDNNNLNEPL----KEAFKRTEIRI 71 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eL----k~~l~~~~~~v 71 (132)
+-+.|+|.||.+.-=++| +++|+..|+++
T Consensus 64 ~~r~VIILTD~D~~GekIr~~l~~~l~~~G~~v 96 (132)
T PRK04017 64 RGKEVIILTDFDRKGEELAKKLSEYLQGYGIKV 96 (132)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhCCCCc
Confidence 568999999999755554 45555555554
No 258
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=33.55 E-value=1.9e+02 Score=25.23 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC--C-----------------CchHHHHHHH-hhcCee
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS--D-----------------QSPHVDLAIL-SQANHF 91 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l--~-----------------~~~~vDl~Il-~~A~~F 91 (132)
+.+.+....+ +=++|.|.+|++ ..-.|-++|.+.|++++.. . |.-.+..+|- ..+|.+
T Consensus 300 ~~l~~~~~~l-~Gkrvai~~~~~-~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~dli 377 (432)
T TIGR01285 300 DAMLDTHFFL-GGKKVAIAAEPD-LLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGADLL 377 (432)
T ss_pred HHHHHHHHhh-CCCEEEEEcCHH-HHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCCCEE
Confidence 3334434444 447788998875 3344555677778766542 1 2223333332 458999
Q ss_pred eeccee
Q psy9357 92 IGNCIS 97 (132)
Q Consensus 92 IGNcvS 97 (132)
|||..-
T Consensus 378 ig~s~~ 383 (432)
T TIGR01285 378 ITNSHG 383 (432)
T ss_pred EECcch
Confidence 998644
No 259
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=33.45 E-value=2.3e+02 Score=22.00 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=59.5
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccC--CcEEEeC-C-CchHHHHHHHhhcCeee
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRT--EIRIVPS-D-QSPHVDLAILSQANHFI 92 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~--~~~vv~l-~-~~~~vDl~Il~~A~~FI 92 (132)
..+.++..++++.++++...- .++.|.+--+... -.++|..+|... +-.|+.. . ....-..+++.-||..+
T Consensus 21 ~~~~~~~~~l~~~l~~a~~d~-~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~ 99 (214)
T cd07022 21 SSGLTSYEGIAAAIRAALADP-DVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAADRIV 99 (214)
T ss_pred CCCcccHHHHHHHHHHHhhCC-CCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEE
Confidence 356788999999999988885 8999988544332 356677777543 3556665 3 34566667777777666
Q ss_pred ecce--------eecchhhhhhhhcCCC
Q psy9357 93 GNCI--------SSFTAFVKRHRDVKGL 112 (132)
Q Consensus 93 GNcv--------SSFTa~V~reR~~~G~ 112 (132)
.+-- +.-..+.++.=+-.|.
T Consensus 100 a~~~a~~g~iG~~~~~~~~~~ll~k~Gi 127 (214)
T cd07022 100 VTPTAGVGSIGVVASHVDQSKALEKAGL 127 (214)
T ss_pred EcCCCeEEeeeEEEecCCHHHHHHhCCC
Confidence 5543 4444556665555554
No 260
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=33.29 E-value=1.3e+02 Score=26.72 Aligned_cols=59 Identities=31% Similarity=0.369 Sum_probs=37.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEeC-CC-chHHHHHH
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAI 84 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~I 84 (132)
...+.+||+.+|.+++. +. ++.-||--| +..++-++|.++|. +-.|..| .| .-.|+++.
T Consensus 274 ~~~~DYPSv~ql~~~l~----e~-~i~~IFAVt~~~~~~Y~~L~~~i~--~s~vg~L~~dSsNIv~LI~ 335 (426)
T PF00362_consen 274 STEQDYPSVGQLVRKLS----EN-NINPIFAVTKDVYSIYEELSNLIP--GSSVGELSSDSSNIVQLIK 335 (426)
T ss_dssp GGCS----HHHHHHHHH----HT-TEEEEEEEEGGGHHHHHHHHHHST--TEEEEEESTTSHTHHHHHH
T ss_pred cccccCCCHHHHHHHHH----Hc-CCEEEEEEchhhhhHHHHHhhcCC--CceecccccCchhHHHHHH
Confidence 45689999988776654 55 889999888 45567889999995 4466667 55 33445443
No 261
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=33.24 E-value=1.5e+02 Score=25.16 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=37.6
Q ss_pred CcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeecceee
Q psy9357 44 IKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGNCISS 98 (132)
Q Consensus 44 lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGNcvSS 98 (132)
.++++|-||... +.+++.+.|+..++++..+ |. ...++++--.++|..||=|-=|
T Consensus 23 ~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS 92 (375)
T cd08179 23 GKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGS 92 (375)
T ss_pred CCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 378888898643 6789999998777766543 22 3445555567889998765433
No 262
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=33.19 E-value=96 Score=28.91 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
++.+++.|++++++. ..|.|.+......++|.+.|...++++..+
T Consensus 428 i~~Ll~eI~~~~~~g---~~vLIf~~tk~~ae~L~~~L~~~gi~~~~l 472 (655)
T TIGR00631 428 VDDLLSEIRQRVARN---ERVLVTTLTKKMAEDLTDYLKELGIKVRYL 472 (655)
T ss_pred HHHHHHHHHHHHcCC---CEEEEEECCHHHHHHHHHHHhhhccceeee
Confidence 356666676666543 678888888888999999998777765544
No 263
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=33.13 E-value=1.5e+02 Score=24.15 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=54.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEe---CCC-------chHHHHH
Q psy9357 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVP---SDQ-------SPHVDLA 83 (132)
Q Consensus 19 t~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~---l~~-------~~~vDl~ 83 (132)
|.-+..|+-......+-+.++.. +.+.|+|..|.+. .++.+++++++.|++|+. ++. .+++..+
T Consensus 113 ~~fr~~~~~~~~~~a~~~~l~~~-~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i 191 (389)
T cd06352 113 TLTRTLPPARKLGEAVLALLRWF-NWHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDI 191 (389)
T ss_pred ceeecCCcHHHHHHHHHHHHHHc-CceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHh
Confidence 34456778777777777777777 7889998774332 366788888777887764 221 2344433
Q ss_pred HHhhcCeeeecce-eecchhhhhhhh
Q psy9357 84 ILSQANHFIGNCI-SSFTAFVKRHRD 108 (132)
Q Consensus 84 Il~~A~~FIGNcv-SSFTa~V~reR~ 108 (132)
-..+|++|..+. .....+++.-|+
T Consensus 192 -~~~~~vii~~~~~~~~~~~l~q~~~ 216 (389)
T cd06352 192 -KRRSRIIIMCGSSEDVRELLLAAHD 216 (389)
T ss_pred -hhcceEEEEECCHHHHHHHHHHHHH
Confidence 333477776554 334455555444
No 264
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=33.07 E-value=1e+02 Score=19.49 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.+++.+++++.=..+-|-+|...-...|..+++..|.+++..
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 456666665222566688888888899999999888887765
No 265
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=32.70 E-value=1e+02 Score=20.16 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHh-----------CCCcEEEEecCCc
Q psy9357 25 PSVETVVRQLKRVVREH-----------GQIKYIFVATDNN 54 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~-----------~~lk~VfIaTD~~ 54 (132)
-+.+.+++.++..+++. ..-+.|+|.||+-
T Consensus 12 ~~p~~l~~~lr~~RR~g~i~~~vsi~~~~~~~ei~I~tD~G 52 (63)
T PF04566_consen 12 SDPEELVKTLRNLRRSGKISKEVSIVYDIREKEIRINTDAG 52 (63)
T ss_dssp SSHHHHHHHHHHHHHTTSS-TTSEEEEETTTTEEEEE-SSC
T ss_pred cCHHHHHHHHHHHhhccCCcceeEEEEeccCCEEEEEccCC
Confidence 35688999999998874 2568899999875
No 266
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=32.70 E-value=47 Score=26.20 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=24.3
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. ++-++|+++|+..|++|+-+
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (171)
T TIGR01119 2 KIAIGCDHIVTDVKMEVSEFLKSKGYEVLDV 32 (171)
T ss_pred EEEEEeCCchHHHHHHHHHHHHHCCCEEEEe
Confidence 489999976 46788999999889999875
No 267
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=32.67 E-value=71 Score=15.88 Aligned_cols=30 Identities=27% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeCC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPSD 75 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~ 75 (132)
++++..|.......+.+.|...++.+....
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 31 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEAT 31 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeC
Confidence 467777777777777788876677655443
No 268
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=32.56 E-value=1.3e+02 Score=27.90 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEec-CCcc-cHHHHHHhhcc-CCcEEEeC
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVAT-DNNN-LNEPLKEAFKR-TEIRIVPS 74 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~-~~~eLk~~l~~-~~~~vv~l 74 (132)
.++|++-++-+++-. +.+.|+||. |+.. -++-|+.++.. ..++++.+
T Consensus 180 a~eI~~Gi~il~~i~-~~~~vvIaied~kp~ai~~l~~a~~~~~~i~I~~l 229 (529)
T COG4656 180 AEEIVKGIQILRKIL-KPKEVVIAIEDNKPEAIAALRAALFGDRDIKIHVL 229 (529)
T ss_pred HHHHHHHHHHHHHhc-ccceeEEEEecCCHHHHHHHHHHhccCCceEEEEc
Confidence 467777777777777 899999999 6665 69999999987 45788877
No 269
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=32.52 E-value=1.3e+02 Score=18.74 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
++++.+++...=..+-|-+|...-...+..+++..|.+++..
T Consensus 15 ~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 15 KTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred HHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEE
Confidence 344455555234567777888888999999999888877654
No 270
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=32.28 E-value=1.3e+02 Score=25.99 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=39.5
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEE
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv 72 (132)
-+..|+-....+.+..+++.. +-+.|.|..+.+. ..+.+++.+++.|+.|+
T Consensus 164 fRt~p~d~~~~~al~~l~~~~-~W~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~ 218 (472)
T cd06374 164 LRVVPSDTLQARAMLDIVKRY-NWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIA 218 (472)
T ss_pred EEcCCChHHHHHHHHHHHHHC-CCcEEEEEEecchHHHHHHHHHHHHHHHCCeeEE
Confidence 356788888888888888887 8899998885544 46778888887788776
No 271
>TIGR01057 topA_arch DNA topoisomerase I, archaeal. This model describes topoisomerase I from archaea. These enzymes are involved in the control of DNA topology. DNA topoisomerase I belongs to the type I topoisomerases, which are ATP-independent.
Probab=32.20 E-value=71 Score=29.32 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccC-CcEEEeC-----------------CC---------
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRT-EIRIVPS-----------------DQ--------- 76 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~-~~~vv~l-----------------~~--------- 76 (132)
+.+++.|++.++ ++..|++|||++.+ ..++-++++.. .++.+.+ .+
T Consensus 81 ~~~~~~ik~l~~---~~d~ii~AtD~DREGE~I~~~i~~~~~~~~~v~Rl~~~~lt~~~I~~a~~nl~~~~~~l~~a~~a 157 (618)
T TIGR01057 81 SKYIKALSKLAK---GADEYINACDYDIEGEVIGFKALKYFCGVERAKRMKFSTLTKQDIRRAYANPEEIDYGMVDAGMA 157 (618)
T ss_pred HHHHHHHHHHHh---cCCEEEECCCCCccHHHHHHHHHHHhccCCCceEEEEccCCHHHHHHHHhCcccCCHhHHHHHHH
Confidence 356666666664 67899999999973 33466666432 2333321 11
Q ss_pred chHHHHHHHhhcC----------------eeeecceeecch-hhhhhhhcCCC-CCCcccCC
Q psy9357 77 SPHVDLAILSQAN----------------HFIGNCISSFTA-FVKRHRDVKGL-PSSFWAFP 120 (132)
Q Consensus 77 ~~~vDl~Il~~A~----------------~FIGNcvSSFTa-~V~reR~~~G~-ps~F~g~~ 120 (132)
-+..|.+|+-..- .=+|-|.|---+ -|.|+|++.+| |..||.+.
T Consensus 158 R~~~D~liG~n~Sr~~t~~~~~~~~~~~~lS~GRVQtPtL~lvv~Re~eI~~F~p~~y~~i~ 219 (618)
T TIGR01057 158 RHILDWYWGINLSRALMEAIRAAAGRWVILSAGRVQGPTLAFLVEREREINLFVPKPYWVIK 219 (618)
T ss_pred HHHHHHHHhhhhhHHHHHHhhccCCCcccccccccchhHHHHHHHhHHHHHcCcCCccEEEE
Confidence 2455665543111 234555544333 45899999997 78999874
No 272
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=32.19 E-value=48 Score=26.16 Aligned_cols=29 Identities=10% Similarity=0.160 Sum_probs=24.5
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. ++-++|+++|+..|++|+-+
T Consensus 2 kI~IgsDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (171)
T PRK08622 2 KIAIGCDHIVTDEKMAVSDYLKSKGHEVIDV 32 (171)
T ss_pred EEEEEeCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 489999976 46888999999889999876
No 273
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=32.13 E-value=1.7e+02 Score=22.97 Aligned_cols=45 Identities=9% Similarity=0.258 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec---CCcccHHHHHHhhccCCcE
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT---DNNNLNEPLKEAFKRTEIR 70 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT---D~~~~~~eLk~~l~~~~~~ 70 (132)
+...+|.+++-+....- +.+-+||.| |..+..+++.++|.+.+++
T Consensus 12 ~~~~~i~~~~~~~ag~~-~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~ 59 (217)
T cd03145 12 YDNRAILQRFVARAGGA-GARIVVIPAASEEPAEVGEEYRDVFERLGAR 59 (217)
T ss_pred cCHHHHHHHHHHHcCCC-CCcEEEEeCCCcChhHHHHHHHHHHHHcCCc
Confidence 45667777776655443 678899988 3456788999999888874
No 274
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=32.07 E-value=1.2e+02 Score=25.95 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=29.3
Q ss_pred cEEEEecCCcccHHHHHHhhccC--CcEEEeC--CC------------chHHHHHHH
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRT--EIRIVPS--DQ------------SPHVDLAIL 85 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~--~~~vv~l--~~------------~~~vDl~Il 85 (132)
-.++|.-|.+.+-=.|-+.+++. +++++.+ |. ...+|...+
T Consensus 77 pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~PqvWAWr~~R~~~i~k~~d~vl~ 133 (347)
T PRK14089 77 ADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQVWAWKKGRAKILEKYCDFLAS 133 (347)
T ss_pred CCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceeeCcchHHHHHHHHhhhhc
Confidence 56788899998766677777766 6888764 22 567787777
No 275
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=32.05 E-value=75 Score=25.20 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~ 66 (132)
++.+++|+.+.+ -+-|+|.||++.-=+.|++.+.+
T Consensus 35 ~~~i~~i~~~~~----~rgVIIfTDpD~~GekIRk~i~~ 69 (174)
T TIGR00334 35 DETINLIKKAQK----KQGVIILTDPDFPGEKIRKKIEQ 69 (174)
T ss_pred HHHHHHHHHHhh----cCCEEEEeCCCCchHHHHHHHHH
Confidence 345555555443 37788888888766666665544
No 276
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=32.04 E-value=64 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=27.7
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
+-|++++++++|..+++.. +.+.|-|.||=
T Consensus 236 ~~~~~~~~~~hi~~i~~l~-G~dhVgiGsDf 265 (309)
T cd01301 236 ADATLDDVVRHIDYIVDLI-GIDHVGLGSDF 265 (309)
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCeEEECccc
Confidence 4689999999999999998 99999999984
No 277
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=31.92 E-value=1e+02 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCcEEEEec--CCcccHHHHHHhhccCCcEEEe
Q psy9357 32 RQLKRVVREHGQIKYIFVAT--DNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaT--D~~~~~~eLk~~l~~~~~~vv~ 73 (132)
..+.+.+++. ++++|.+++ ++.+-++.|.++++. ++++.
T Consensus 139 ~~ai~~L~~~-G~~~I~v~~ll~~~~gl~~l~~~~p~--v~i~~ 179 (207)
T TIGR01091 139 IAALDLLKKR-GAKKIKVLSIVAAPEGIEAVEKAHPD--VDIYT 179 (207)
T ss_pred HHHHHHHHHc-CCCEEEEEEEecCHHHHHHHHHHCCC--CEEEE
Confidence 3444455565 899999999 888889999999974 56665
No 278
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=31.88 E-value=81 Score=23.69 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeCC--CchHHHHHHHhhc
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSD--QSPHVDLAILSQA 88 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~--~~~~vDl~Il~~A 88 (132)
.-+-|+|.||.+.-=++|++.|.+. ++ ..+.||+.++..+
T Consensus 54 ~~k~VIILTD~D~~Ge~Irk~l~~~------l~~~~~~~id~~~~~~~ 95 (127)
T COG1658 54 KYKGVIILTDPDRKGERIRKKLKEY------LPGAKGAFIDREIRNKL 95 (127)
T ss_pred ccCCEEEEeCCCcchHHHHHHHHHH------hcccccccccHHHhhhc
Confidence 4588999999999888888888652 33 2777888887763
No 279
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=31.72 E-value=1.2e+02 Score=26.82 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCC
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQ 76 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~ 76 (132)
+++.+.++++ +++.|+||.+..+ .+.+|-+.++..+++|...|+
T Consensus 193 ~dL~~~v~~~-~IdeViIAip~~~~~~l~ell~~~~~~~v~V~ivP~ 238 (463)
T PRK10124 193 QQLVEDAKAG-KIHNVYIAMSMCDGARVKKLVRQLADTTCSVLLIPD 238 (463)
T ss_pred HHHHHHHHhC-CCCEEEEeCCCcchHHHHHHHHHHHHcCCeEEEecc
Confidence 3455677787 9999999996443 466666667667777766554
No 280
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=31.60 E-value=86 Score=23.00 Aligned_cols=10 Identities=0% Similarity=0.115 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy9357 31 VRQLKRVVRE 40 (132)
Q Consensus 31 ~~~ik~~~~~ 40 (132)
...++..++.
T Consensus 13 ~~~l~~~L~~ 22 (227)
T TIGR03787 13 RENYADALKR 22 (227)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 281
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=31.58 E-value=1.3e+02 Score=22.14 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCCc--EEEe
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTEI--RIVP 73 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~~--~vv~ 73 (132)
..+++++++++.+++. +.|||.. ++- ..+.+|+..|+..+. .|++
T Consensus 4 ~K~~~v~~l~~~l~~~---~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~K 53 (157)
T cd05797 4 KKEEIVAELKEKLKEA---KSVVVADYRGLTVAQLTELRKELREAGVKLKVVK 53 (157)
T ss_pred HHHHHHHHHHHHHHhC---CEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEeh
Confidence 3578899999999976 7888887 433 378899999997654 5554
No 282
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=31.56 E-value=2.2e+02 Score=21.19 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=55.0
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC---CC-----chHHHHHHHhhcCe
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS---DQ-----SPHVDLAILSQANH 90 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l---~~-----~~~vDl~Il~~A~~ 90 (132)
-.|+.......+-+++... +.++|.|..+...+ .+-+++++++.+++++.. +. ...+..+.-..+|.
T Consensus 116 ~~~~~~~~~~~~~~~l~~~-~~~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 194 (299)
T cd04509 116 TGPSDEQQAEALADYIKEY-NWKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDV 194 (299)
T ss_pred ecCCcHHHHHHHHHHHHHc-CCcEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCE
Confidence 4577777777787888877 78888877754443 445666666667776542 21 35555555555788
Q ss_pred eeecce-eecchhhhhhhhcCCC
Q psy9357 91 FIGNCI-SSFTAFVKRHRDVKGL 112 (132)
Q Consensus 91 FIGNcv-SSFTa~V~reR~~~G~ 112 (132)
.|..+. +....+++.-|+ .|+
T Consensus 195 v~~~~~~~~~~~~~~~~~~-~g~ 216 (299)
T cd04509 195 IVLCGSGEDAATILKQAAE-AGL 216 (299)
T ss_pred EEEcccchHHHHHHHHHHH-cCC
Confidence 877666 455555555554 455
No 283
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=31.39 E-value=1.9e+02 Score=22.24 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCcEEEEecCC---cccHHHHHHhhccCCcEEEeC--CC--chHHHHHHHhhcCeeeecceeecc
Q psy9357 43 QIKYIFVATDN---NNLNEPLKEAFKRTEIRIVPS--DQ--SPHVDLAILSQANHFIGNCISSFT 100 (132)
Q Consensus 43 ~lk~VfIaTD~---~~~~~eLk~~l~~~~~~vv~l--~~--~~~vDl~Il~~A~~FIGNcvSSFT 100 (132)
+.+-+||.|.+ ..+.++.+++|.+.|.+++.+ .+ ........+..||..+=.+-+++.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~ 93 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLR 93 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHH
Confidence 68899999954 357889999999988877765 21 223344566677765555555543
No 284
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=31.38 E-value=2.5e+02 Score=24.23 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecC--CcccHHHHHHhhccCCc-EEEeC-CCchHHHHHHHhhcCeeeecceeecch
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATD--NNNLNEPLKEAFKRTEI-RIVPS-DQSPHVDLAILSQANHFIGNCISSFTA 101 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD--~~~~~~eLk~~l~~~~~-~vv~l-~~~~~vDl~Il~~A~~FIGNcvSSFTa 101 (132)
.++.+++.++.+.++.++++-+.+... ...+.+++++..++.+. +-|.+ ... .+. .+++.||+|+-...|-=-.
T Consensus 307 g~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~-~v~-~~l~~aDv~vlpS~~Eg~p 384 (475)
T cd03813 307 DIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQ-NVK-EYLPKLDVLVLTSISEGQP 384 (475)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCc-cHH-HHHHhCCEEEeCchhhcCC
Confidence 457778888777776546665555543 23467888888776665 34444 422 222 3467999998655443224
Q ss_pred hhhhhhhcCCCC
Q psy9357 102 FVKRHRDVKGLP 113 (132)
Q Consensus 102 ~V~reR~~~G~p 113 (132)
.+.-|=++.|.|
T Consensus 385 ~~vlEAma~G~P 396 (475)
T cd03813 385 LVILEAMAAGIP 396 (475)
T ss_pred hHHHHHHHcCCC
Confidence 455666777777
No 285
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=31.05 E-value=2.9e+02 Score=22.47 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=21.5
Q ss_pred HHHHhhcCeeeecceeecchhhhhhhhcCCCCC-CcccC
Q psy9357 82 LAILSQANHFIGNCISSFTAFVKRHRDVKGLPS-SFWAF 119 (132)
Q Consensus 82 l~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps-~F~g~ 119 (132)
.+++++|+.||||- |+ .-+.=.+.|.|+ .+||-
T Consensus 255 ~ali~~a~l~Vs~D----SG-p~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 255 AALIDHARLFIGVD----SV-PMHMAAALGTPLVALFGP 288 (344)
T ss_pred HHHHHhCCEEEecC----CH-HHHHHHHcCCCEEEEECC
Confidence 46889999999994 11 333345667775 56664
No 286
>KOG1752|consensus
Probab=31.04 E-value=2e+02 Score=20.61 Aligned_cols=51 Identities=10% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCc--EEEeC---CCchHHHHHHHhh
Q psy9357 33 QLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEI--RIVPS---DQSPHVDLAILSQ 87 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~--~vv~l---~~~~~vDl~Il~~ 87 (132)
++++.+.+ +.|.|-| ..=.|-..+|+.|...++ +|+.+ ++...++-++..-
T Consensus 6 ~v~~~i~~----~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~ 62 (104)
T KOG1752|consen 6 KVRKMISE----NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKL 62 (104)
T ss_pred HHHHHhhc----CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHh
Confidence 45555554 4566666 344576778888887653 77777 4566777777733
No 287
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=30.94 E-value=1.2e+02 Score=23.34 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccC-CcEEEe
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRT-EIRIVP 73 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~-~~~vv~ 73 (132)
.++++++|++.+.++ ++|||.. ++- ..+.+|++.|+.. .+.|++
T Consensus 3 K~~~v~el~e~l~~~---~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~K 50 (175)
T cd05795 3 KKEYVEKLTELLKSY---PKVLIVDADNVGSKQLQKIRRSLRGKAEILMGK 50 (175)
T ss_pred HHHHHHHHHHHHHhC---CEEEEEEecCCChHHHHHHHHHhhCCCEEEEec
Confidence 567889999999976 8999988 644 3799999999863 234443
No 288
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=30.91 E-value=1.1e+02 Score=25.64 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHh-----------CCCcEEEEecCCcc---cHHHHHHhhccCCcEEEe
Q psy9357 25 PSVETVVRQLKRVVREH-----------GQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~-----------~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~ 73 (132)
=+.+++++|+...++.. -.+.+|-|=.|+++ ....|++.|...|++|..
T Consensus 188 ~d~~~a~~qvl~m~~~g~v~a~dG~~v~v~adsiCvHGD~p~Al~~~~riR~~l~~~gi~v~~ 250 (252)
T COG1540 188 HDEEEALAQVLQMVREGKVTAIDGEWVAVEADSICVHGDNPHALAFARRIRAALEAEGIKVAA 250 (252)
T ss_pred cCHHHHHHHHHHHHhcCceEeeCCcEEeeecceEEEcCCCHHHHHHHHHHHHHHHHcCCeeec
Confidence 37899999999999874 16788888889887 688999999988988864
No 289
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=30.82 E-value=1.7e+02 Score=25.44 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=10.9
Q ss_pred HHHHHh-hcCeeeecc
Q psy9357 81 DLAILS-QANHFIGNC 95 (132)
Q Consensus 81 Dl~Il~-~A~~FIGNc 95 (132)
..+|-. ++|.+|||-
T Consensus 353 ~~~i~~~~pDllig~~ 368 (427)
T PRK02842 353 LDRIRALRPDLVVCGL 368 (427)
T ss_pred HHHHHHcCCCEEEccC
Confidence 344555 899999994
No 290
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=30.78 E-value=1.1e+02 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.2
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. ++-+.|+++|+..|++|+-+
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~G~eV~D~ 32 (171)
T PRK12615 2 KIAIGCDHIVTNEKMAVSDFLKSKGYDVIDC 32 (171)
T ss_pred EEEEEeCchhHHHHHHHHHHHHHCCCEEEEc
Confidence 589999976 46788999999889999875
No 291
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=30.77 E-value=1.4e+02 Score=26.01 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCc
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEI 69 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~ 69 (132)
+++.|++.|+...+.+++++.+|+.-|+- .++.+|-+.|++.++
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i 275 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGV 275 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCc
Confidence 78999999999888754789999876532 366777777765553
No 292
>KOG0053|consensus
Probab=30.69 E-value=1.1e+02 Score=27.29 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=48.0
Q ss_pred CCcEEEEecCCcc-----cHHHHHHhhccCCcEEEe---C--CC-chHHH-----------HHHHhhcCeeeecceeecc
Q psy9357 43 QIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVP---S--DQ-SPHVD-----------LAILSQANHFIGNCISSFT 100 (132)
Q Consensus 43 ~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~---l--~~-~~~vD-----------l~Il~~A~~FIGNcvSSFT 100 (132)
+.+-||+=|-.++ -+++|++.-++.|+.||. . |+ .-.+. -||.||+|+..|--+.++-
T Consensus 162 ~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~ 241 (409)
T KOG0053|consen 162 NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSE 241 (409)
T ss_pred CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcH
Confidence 5789999997665 477888877777876653 2 32 22233 4899999999999999877
Q ss_pred hhhhhhhhc
Q psy9357 101 AFVKRHRDV 109 (132)
Q Consensus 101 a~V~reR~~ 109 (132)
.++++.|..
T Consensus 242 ~~~~~l~~~ 250 (409)
T KOG0053|consen 242 ELASRLKFL 250 (409)
T ss_pred HHHHHHHHH
Confidence 777666543
No 293
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=30.69 E-value=2e+02 Score=22.55 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhcc---CCcEEEeC-CCchHHHHHHHhhcCeeeecc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKR---TEIRIVPS-DQSPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~---~~~~vv~l-~~~~~vDl~Il~~A~~FIGNc 95 (132)
-++..++++.|+++.+.- .++.|.+--|... -++||.++++. .+-.|+.. .....--.+|+..||..+-+-
T Consensus 28 ~~~~~~l~~~l~~a~~d~-~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~~sggy~lasaad~I~a~p 106 (222)
T cd07018 28 ELSLRDLLEALEKAAEDD-RIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADGYSQGQYYLASAADEIYLNP 106 (222)
T ss_pred CccHHHHHHHHHHHhcCC-CeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCCchhhhhhhhCCEEEECC
Confidence 478899999999999886 8999998776654 47788877753 34566665 434556677888888777665
Q ss_pred eeecch--------hhhhhhhcCCCC
Q psy9357 96 ISSFTA--------FVKRHRDVKGLP 113 (132)
Q Consensus 96 vSSFTa--------~V~reR~~~G~p 113 (132)
-++|.. +++..=+-.|..
T Consensus 107 ~~~vg~iGv~~~~~~~~~ll~klGv~ 132 (222)
T cd07018 107 SGSVELTGLSAETLFFKGLLDKLGVE 132 (222)
T ss_pred CceEEeeccchhhhhHHHHHHHcCCc
Confidence 555544 445444555543
No 294
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=30.58 E-value=2.6e+02 Score=21.69 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc--EEEeCCCchHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI--RIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~--~vv~l~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
++.+++.++.+.++.++++-+++..+ ...+++++.++..++ .|.-+.....+ ..+++.||.||....+-=...+-
T Consensus 203 ~~~li~a~~~l~~~~~~~~l~i~G~g--~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~~~~ad~~v~~s~~e~~~~~~ 279 (360)
T cd04951 203 YPNLLKAFAKLLSDYLDIKLLIAGDG--PLRATLERLIKALGLSNRVKLLGLRDDI-AAYYNAADLFVLSSAWEGFGLVV 279 (360)
T ss_pred cHHHHHHHHHHHhhCCCeEEEEEcCC--CcHHHHHHHHHhcCCCCcEEEecccccH-HHHHHhhceEEecccccCCChHH
Confidence 34566666665554435555555432 234666666655443 23333222122 24689999999753321113344
Q ss_pred hhhhcCCCC
Q psy9357 105 RHRDVKGLP 113 (132)
Q Consensus 105 reR~~~G~p 113 (132)
-|=...|.|
T Consensus 280 ~Ea~a~G~P 288 (360)
T cd04951 280 AEAMACELP 288 (360)
T ss_pred HHHHHcCCC
Confidence 455667777
No 295
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=30.49 E-value=68 Score=22.25 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=16.0
Q ss_pred chHHHHHHHhhcCeeeecc
Q psy9357 77 SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNc 95 (132)
.-.-|+.-+.+||.+|.+.
T Consensus 51 i~~~d~~~i~~~D~via~l 69 (113)
T PF05014_consen 51 IFERDLEGIRECDIVIANL 69 (113)
T ss_dssp HHHHHHHHHHHSSEEEEEE
T ss_pred HHHHHHHHHHHCCEEEEEC
Confidence 5667899999999999874
No 296
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=30.38 E-value=1.6e+02 Score=22.05 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=18.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATD 52 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD 52 (132)
.-|-..++++.+++..++. +.+-++..++
T Consensus 10 ~~~~~~~~~~gi~~~~~~~-g~~~~~~~~~ 38 (259)
T cd01542 10 DSFSTSRTVKGILAALYEN-GYQMLLMNTN 38 (259)
T ss_pred ccchHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 3455567777777777776 6666555443
No 297
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=30.26 E-value=2.7e+02 Score=23.84 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc--cHHHHHHhhccCCcEEEeC----------------CCchHHHHHHH
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT-DNNN--LNEPLKEAFKRTEIRIVPS----------------DQSPHVDLAIL 85 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~--~~~eLk~~l~~~~~~vv~l----------------~~~~~vDl~Il 85 (132)
=+++++.++++.|++. +.+-.||-| ++-| .+.-++.|-++.+..||+. |-...=|+..|
T Consensus 5 ~ti~~lr~~~~~~r~~--gk~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~l 82 (285)
T COG0414 5 TTIAELRQAIKALRKE--GKRVGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELL 82 (285)
T ss_pred ehHHHHHHHHHHHHHc--CCEEEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHH
Confidence 3567777888866664 678899999 8777 5888888888777777762 22666888999
Q ss_pred hhcCe
Q psy9357 86 SQANH 90 (132)
Q Consensus 86 ~~A~~ 90 (132)
..+.+
T Consensus 83 e~~gv 87 (285)
T COG0414 83 EKEGV 87 (285)
T ss_pred HhcCC
Confidence 88775
No 298
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=30.15 E-value=29 Score=29.89 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.9
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+||| |=..|||+++|.
T Consensus 156 ~~~l~~~Lvl~ADH--g~n~ST~aaRv~ 181 (349)
T cd06109 156 VRALDAYLVTVADH--GMNASTFTARVI 181 (349)
T ss_pred HHHHHHHHhHhccc--CCCchhhHHHHH
Confidence 68899999999999 777999999773
No 299
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=30.08 E-value=73 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccH
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLN 57 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~ 57 (132)
+.+.-++.++++++.. .+..+.|.||++...
T Consensus 219 ~~~~~~~~l~~~~~~~-~~d~ill~TD~p~~~ 249 (293)
T cd00530 219 SDETRADAVKALIDEG-YGDRLLLSHDVFRKS 249 (293)
T ss_pred CHHHHHHHHHHHHHCC-CcCCEEEeCCcCchh
Confidence 3456677888888887 788999999987643
No 300
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=29.91 E-value=1.6e+02 Score=25.88 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecC--CcccHHHHHHhhccCCcEEEeC
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATD--NNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD--~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.+++++=++-+.+.. +++.+||+-. ....++.|++++...+++|+.+
T Consensus 180 ~~~i~~G~~~~~~~~-~a~~~~i~i~~~~~~~i~~l~~~~~~~~i~v~~~ 228 (435)
T TIGR01945 180 AEEIIGGIRILLKIL-GVKKVVIGIEDNKPEAIAALKKALGGYNIKVRVL 228 (435)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEEeCCCHHHHHHHHHHHhhCCeEEEEC
Confidence 556777777777777 8999999983 3357888999988777888876
No 301
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.80 E-value=1.1e+02 Score=27.56 Aligned_cols=76 Identities=16% Similarity=0.342 Sum_probs=48.3
Q ss_pred ccccccCCCHHHHHHHHHHHHHHhC--CCcEEEEec-CC----cccHHHHHHhhccCC---cEEEeC-CC----chH---
Q psy9357 18 ATEELCFPSVETVVRQLKRVVREHG--QIKYIFVAT-DN----NNLNEPLKEAFKRTE---IRIVPS-DQ----SPH--- 79 (132)
Q Consensus 18 lt~~~C~Ps~~~I~~~ik~~~~~~~--~lk~VfIaT-D~----~~~~~eLk~~l~~~~---~~vv~l-~~----~~~--- 79 (132)
....+|+|.+=.|-..+....+.-. +..+|||-. .. ..++..|++||+..| ++|+++ .+ .+-
T Consensus 44 ~~~d~C~P~~ltiG~lid~~~~g~~d~~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e~~~k~~G~~~ 123 (420)
T COG3581 44 SNNDICLPAILTIGQLIDAIESGEYDIENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSENLEKEPGFKF 123 (420)
T ss_pred CCccccchhhhhHHHHHHHHHhCCccccccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeeccccccCCCccc
Confidence 3457899999998877776655411 355666543 22 248999999999876 688886 11 222
Q ss_pred -HHHHHHhhcCeeee
Q psy9357 80 -VDLAILSQANHFIG 93 (132)
Q Consensus 80 -vDl~Il~~A~~FIG 93 (132)
++..|.....+..|
T Consensus 124 ~~~~~i~~~~ail~G 138 (420)
T COG3581 124 TVKFLIRLMLAILYG 138 (420)
T ss_pred chhHHHHHHHHHHHh
Confidence 55555554444444
No 302
>PF13730 HTH_36: Helix-turn-helix domain
Probab=29.70 E-value=41 Score=20.27 Aligned_cols=13 Identities=54% Similarity=1.058 Sum_probs=11.2
Q ss_pred cCCCHHHHHHHHH
Q psy9357 23 CFPSVETVVRQLK 35 (132)
Q Consensus 23 C~Ps~~~I~~~ik 35 (132)
|+||.+.|++.+.
T Consensus 24 ~~pS~~~la~~~g 36 (55)
T PF13730_consen 24 CFPSQETLAKDLG 36 (55)
T ss_pred CCcCHHHHHHHHC
Confidence 9999999998754
No 303
>PF13362 Toprim_3: Toprim domain
Probab=29.68 E-value=1.2e+02 Score=20.29 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=25.3
Q ss_pred CCcEEEEecCCccc------HHHHHHhhccCCcEEEeC
Q psy9357 43 QIKYIFVATDNNNL------NEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 43 ~lk~VfIaTD~~~~------~~eLk~~l~~~~~~vv~l 74 (132)
..+.|+|+.|++.- ..++.+.|+..|+.+..+
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~ 77 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIV 77 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEE
Confidence 67999999998876 777888887777766655
No 304
>KOG0124|consensus
Probab=29.54 E-value=1.2e+02 Score=27.40 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=41.6
Q ss_pred cccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccC
Q psy9357 7 QCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRT 67 (132)
Q Consensus 7 qC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~ 67 (132)
|-+|.+ +.++-+.--+|--..|+.++.+-.+++ ..|||||=.+. --+.||.-|...
T Consensus 178 ~mlGGR--NiKVgrPsNmpQAQpiID~vqeeAk~f---nRiYVaSvHpDLSe~DiKSVFEAF 234 (544)
T KOG0124|consen 178 QMLGGR--NIKVGRPSNMPQAQPIIDMVQEEAKKF---NRIYVASVHPDLSETDIKSVFEAF 234 (544)
T ss_pred ccccCc--cccccCCCCCcccchHHHHHHHHHHhh---heEEeeecCCCccHHHHHHHHHhh
Confidence 445555 466777788899999999999999877 89999994443 356677776543
No 305
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=29.45 E-value=2.3e+02 Score=22.71 Aligned_cols=84 Identities=15% Similarity=0.229 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhC----CCcEEEEecCCcccHHHHHHhhccCCc-EEEeC-CCchHHHHHHHhhcCeeeecceeecc
Q psy9357 27 VETVVRQLKRVVREHG----QIKYIFVATDNNNLNEPLKEAFKRTEI-RIVPS-DQSPHVDLAILSQANHFIGNCISSFT 100 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~----~lk~VfIaTD~~~~~~eLk~~l~~~~~-~vv~l-~~~~~vDl~Il~~A~~FIGNcvSSFT 100 (132)
.+.+++.++.+.++.+ +++-+++..+ +..+++++.++..++ ..+.+ .....+ ..+++.||+||.-...-=.
T Consensus 209 ~~~li~a~~~l~~~~~~~~~~~~l~i~G~g--~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~~~~adi~v~pS~~Eg~ 285 (374)
T TIGR03088 209 QPTLVRAFALLVRQLPEGAERLRLVIVGDG--PARGACEQMVRAAGLAHLVWLPGERDDV-PALMQALDLFVLPSLAEGI 285 (374)
T ss_pred HHHHHHHHHHHHHhCcccccceEEEEecCC--chHHHHHHHHHHcCCcceEEEcCCcCCH-HHHHHhcCEEEeccccccC
Confidence 4455566666655542 2344444432 344677777766665 34444 222223 3567889999853221112
Q ss_pred hhhhhhhhcCCCC
Q psy9357 101 AFVKRHRDVKGLP 113 (132)
Q Consensus 101 a~V~reR~~~G~p 113 (132)
..+.-|=+..|.|
T Consensus 286 ~~~~lEAma~G~P 298 (374)
T TIGR03088 286 SNTILEAMASGLP 298 (374)
T ss_pred chHHHHHHHcCCC
Confidence 3456666888887
No 306
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=29.17 E-value=2e+02 Score=24.59 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
.=|+|+|..|.+. .--|.++|.+.|++++.
T Consensus 275 ~Gkrv~i~g~~~~-~~~la~~L~elGm~vv~ 304 (396)
T cd01979 275 RGKSIFFMGDNLL-EIPLARFLTRCGMIVVE 304 (396)
T ss_pred cCCEEEEECCchH-HHHHHHHHHHCCCEEEe
Confidence 3356777777643 33344555555665553
No 307
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=29.17 E-value=1.8e+02 Score=22.30 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEe------cC-Ccc-----cHHHHHHhhccCCcEEEeC
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVA------TD-NNN-----LNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIa------TD-~~~-----~~~eLk~~l~~~~~~vv~l 74 (132)
++.+++.|+.+.++. ++++|.|= +| +++ .+.+|.+.|+..|++|.+.
T Consensus 56 v~~av~eI~~~a~kv-~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~g~eV~ra 114 (138)
T PF08915_consen 56 VEKAVEEIKWVAKKV-KAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSRGFEVYRA 114 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHTT-EEEE-
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 566777888999998 99999872 23 222 6888999998777877763
No 308
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=29.16 E-value=1.1e+02 Score=26.60 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=23.0
Q ss_pred CCCcEEEEecCCcc---cHHHHHHhhccCCc--EEEe
Q psy9357 42 GQIKYIFVATDNNN---LNEPLKEAFKRTEI--RIVP 73 (132)
Q Consensus 42 ~~lk~VfIaTD~~~---~~~eLk~~l~~~~~--~vv~ 73 (132)
+++|-+|||||.-. |+...=..|++.+| ..|+
T Consensus 113 p~~riaYIMtDggALP~~fS~~v~~Lk~~g~l~~tIT 149 (320)
T PF12982_consen 113 PDARIAYIMTDGGALPLAFSRTVAELKEKGLLDATIT 149 (320)
T ss_pred CCCeEEEEEeCCcCccHHHHHHHHHHHhCCceeeeEE
Confidence 58999999999654 66666667776665 4444
No 309
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=28.95 E-value=53 Score=27.06 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=29.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
...-+++.++|+++|++.++.. +.+.++|++|..
T Consensus 277 ~~~~~e~~e~v~~ri~~~~~~~-~~~~l~lsp~CG 310 (332)
T cd03311 277 KSPEVESPEEVKDRIEEAAKYV-PLEQLWVSPDCG 310 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHhhC-CHHHEEECCCCC
Confidence 4457889999999999999988 778899999854
No 310
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.90 E-value=1.4e+02 Score=18.42 Aligned_cols=47 Identities=9% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCc---------------EEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 24 FPSVETVVRQLKRVVREHGQIK---------------YIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk---------------~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
+|+-...+.++...+.+. +++ .++|-+|.+ -.+++.+.|++.||+|.
T Consensus 8 ~~d~pG~l~~i~~~l~~~-~inI~~i~~~~~~~~~~~~v~i~v~~~-~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 8 VPDRPGQLADIAAIFKDR-GVNIVSVLVYPSKEEDNKILVFRVQTM-NPRPIIEDLRRAGYEVL 69 (72)
T ss_pred ECCCCCHHHHHHHHHHHc-CCCEEEEEEeccCCCCeEEEEEEEecC-CHHHHHHHHHHCCCeee
Confidence 455555666666666664 222 233333321 23478888887788765
No 311
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=28.87 E-value=96 Score=26.13 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=33.3
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc------------ccHHHHHHhhccCC
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNN------------NLNEPLKEAFKRTE 68 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~------------~~~~eLk~~l~~~~ 68 (132)
.+-|++++++++|..+++.. |..+|=|.||=+ ..+..|.++|.+.|
T Consensus 243 ~~~~~~~~~~~Hi~y~~~l~-G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG 300 (320)
T PF01244_consen 243 DPRASLDDLVDHIDYIVDLV-GIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRG 300 (320)
T ss_dssp SSG-BHHHHHHHHHHHHHHH--GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHhc-CCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHHHCC
Confidence 38899999999999999999 999999999832 13566777775543
No 312
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=28.77 E-value=75 Score=27.06 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEec-CCccc
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVAT-DNNNL 56 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~ 56 (132)
..+|.+.|-+++++. + +.++||| |=.||
T Consensus 167 a~~ig~~i~k~i~e~-~-~~liIaSSDf~HY 195 (279)
T COG1355 167 ARDIGRAIAKVIKEL-G-DALIIASSDFTHY 195 (279)
T ss_pred HHHHHHHHHHHHhhc-C-CeEEEEecCcccc
Confidence 457888888999988 7 9999999 98887
No 313
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=28.74 E-value=1.7e+02 Score=24.88 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEec-CCcc--cHHHHHHhhccCC-cEEEe-------CC----CchHHHHHHHhhcCee
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVAT-DNNN--LNEPLKEAFKRTE-IRIVP-------SD----QSPHVDLAILSQANHF 91 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~--~~~eLk~~l~~~~-~~vv~-------l~----~~~~vDl~Il~~A~~F 91 (132)
..+++++|++.++++ ++|||.. |+-. .+.+||+.|+... +.+.+ +. +.+. +-.-.+++
T Consensus 10 K~~~v~~l~e~l~~y---~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~----l~~L~~~L 82 (310)
T PTZ00135 10 KKAYFEKLYELLEKY---KKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPE----LEKLLPHV 82 (310)
T ss_pred HHHHHHHHHHHHHhC---CEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccC----hHHHHhhc
Confidence 678889999999987 8999998 7654 7999999998632 34443 11 1111 22344778
Q ss_pred eecceeecc
Q psy9357 92 IGNCISSFT 100 (132)
Q Consensus 92 IGNcvSSFT 100 (132)
-||+-=-||
T Consensus 83 kG~~gliFT 91 (310)
T PTZ00135 83 KGNVGFVFT 91 (310)
T ss_pred cCCEEEEEE
Confidence 888865565
No 314
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=28.66 E-value=2.4e+02 Score=23.59 Aligned_cols=86 Identities=14% Similarity=0.240 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-C-Cch-----------HHH-HHHHhhcCe-e
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-D-QSP-----------HVD-LAILSQANH-F 91 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~-~~~-----------~vD-l~Il~~A~~-F 91 (132)
.+.+++.++.+.++.++++-|. +=|.+...++|++.+++.+++.+.+ . +.+ .=| ..+.+.||+ |
T Consensus 246 ~~~ll~A~~~l~~~~~~~~lii-vG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~ 324 (425)
T PRK05749 246 EELVLDAHRALLKQFPNLLLIL-VPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAF 324 (425)
T ss_pred HHHHHHHHHHHHHhCCCcEEEE-cCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEE
Confidence 4455666666665544554333 3344444567888877767755443 1 100 012 357799998 7
Q ss_pred eecce-eecchhhhhhhhcCCCCC
Q psy9357 92 IGNCI-SSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 92 IGNcv-SSFTa~V~reR~~~G~ps 114 (132)
+|-.. ..| ..+--|=++.|.|-
T Consensus 325 v~~S~~e~~-g~~~lEAma~G~PV 347 (425)
T PRK05749 325 VGGSLVKRG-GHNPLEPAAFGVPV 347 (425)
T ss_pred ECCCcCCCC-CCCHHHHHHhCCCE
Confidence 75332 333 33456778888873
No 315
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=28.66 E-value=2.2e+02 Score=20.23 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecC---CcccHHHHHHhhccCCcEEEe
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATD---NNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD---~~~~~~eLk~~l~~~~~~vv~ 73 (132)
+++++.+++++++++.+.=+.|.|.|| ..+.-.-.+...+...+.+++
T Consensus 40 ~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~~~~~~vIs 90 (116)
T TIGR00824 40 NAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARIIVDKPHMDVIA 90 (116)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhhcCCEEEEE
Confidence 478899999999988733367899998 334322222223334567766
No 316
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=28.60 E-value=1.6e+02 Score=20.48 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~ 66 (132)
+++.+|++....++.+-=.+-+.+|.+++-+|+++.|+.
T Consensus 4 ~~~~~qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e 42 (94)
T cd02974 4 ANLKQQLKAYLERLENPVELVASLDDSEKSAELLELLEE 42 (94)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHH
Confidence 568899999998872111233455655778888888864
No 317
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=28.55 E-value=1.2e+02 Score=26.05 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCC
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQ 76 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~ 76 (132)
+++.++++++ +++.|+||.+..+ .+.++-+.++..+++|..+|+
T Consensus 178 ~~l~~~i~~~-~id~ViIa~p~~~~~~~~~ll~~~~~~gv~V~~vP~ 223 (445)
T TIGR03025 178 DDLVELVRAH-RVDEVIIALPLSEEARILELLLQLRDLGVDVRLVPD 223 (445)
T ss_pred HHHHHHHHhC-CCCEEEEecCcccHHHHHHHHHHHHhcCCEEEEeCc
Confidence 4567777887 9999999985433 356666667667777776654
No 318
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=28.40 E-value=2.4e+02 Score=21.49 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccC-CcEEEeCCC-----------c---hHHHHHHHhhcC
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRT-EIRIVPSDQ-----------S---PHVDLAILSQAN 89 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~-~~~vv~l~~-----------~---~~vDl~Il~~A~ 89 (132)
+.+.+.++++.+.... ..+.|.+.- .+.+.++.+.+.+++. +..++-=|- . ..+-..++.+||
T Consensus 52 ~~~~~~~~l~~~~~~~-~~~~i~~G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~d 130 (242)
T cd01169 52 PPEFVAAQLDAVLEDI-PVDAIKIGMLGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLAT 130 (242)
T ss_pred CHHHHHHHHHHHHhCC-CCCEEEECCCCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCe
Confidence 4577889999888876 789999877 5566788888888764 444442110 0 112234568899
Q ss_pred eeeecc
Q psy9357 90 HFIGNC 95 (132)
Q Consensus 90 ~FIGNc 95 (132)
+++.|-
T Consensus 131 vitpN~ 136 (242)
T cd01169 131 LITPNL 136 (242)
T ss_pred EEeCCH
Confidence 998874
No 319
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=28.40 E-value=44 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=22.7
Q ss_pred EEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 47 IFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 47 VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
|+|++|.. ++-+.|+++|++.|++|+-+
T Consensus 1 I~igsDhaG~~lK~~l~~~L~~~g~eV~D~ 30 (144)
T TIGR00689 1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDC 30 (144)
T ss_pred CEEeeCcchHHHHHHHHHHHHHCCCEEEEc
Confidence 57888866 46788999999889988875
No 320
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=28.33 E-value=3.4e+02 Score=22.32 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCc----------ccHHHHHHhhcc-CCcEEEeC-CCchHHHH-HHHhhcCeee
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNN----------NLNEPLKEAFKR-TEIRIVPS-DQSPHVDL-AILSQANHFI 92 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~----------~~~~eLk~~l~~-~~~~vv~l-~~~~~vDl-~Il~~A~~FI 92 (132)
.++.+++.+..+.++.++++-++|..|.. .+.+++.+.+.. .+...|.+ ...+.-|+ .+++.||.||
T Consensus 226 g~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v 305 (396)
T cd03818 226 GFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHV 305 (396)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEE
Confidence 45566777776666555788788776431 144444444432 12333444 44444454 4778999999
Q ss_pred ecceeecchhhhhhhhcCCCC
Q psy9357 93 GNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 93 GNcvSSFTa~V~reR~~~G~p 113 (132)
--...--.+.+--|=++.|.|
T Consensus 306 ~~s~~e~~~~~llEAmA~G~P 326 (396)
T cd03818 306 YLTYPFVLSWSLLEAMACGCL 326 (396)
T ss_pred EcCcccccchHHHHHHHCCCC
Confidence 543321112355677888888
No 321
>PRK13912 nuclease NucT; Provisional
Probab=28.31 E-value=1.2e+02 Score=22.87 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=33.5
Q ss_pred cccccccCCccccccccCCCH-HHHHHHHHHHHHHhCCCcEEEEec---CCcccHHHHHHhhccCCcEEEeC
Q psy9357 7 QCLGYRNEYGVATEELCFPSV-ETVVRQLKRVVREHGQIKYIFVAT---DNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 7 qC~g~~~e~~~lt~~~C~Ps~-~~I~~~ik~~~~~~~~lk~VfIaT---D~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.|+|...+...++. .|.- .++...+.+.+++- -++|+|++ .....++.|.+|-++ |++|.-+
T Consensus 13 ~~~~~~~~~~~~~~---~P~~~~~~~~~l~~~I~~A--k~sI~i~~Y~~~~~~i~~aL~~Aa~R-GV~VrIl 78 (177)
T PRK13912 13 GCLGVLQAKSSLYF---LPYEQKDALNKLVSLISNA--RSSIKIAIYSFTHKDIAKALKSAAKR-GVKISII 78 (177)
T ss_pred HhhhhhhccceEEE---CCCChHHHHHHHHHHHHhc--ccEEEEEEEEEchHHHHHHHHHHHHC-CCEEEEE
Confidence 58888544444442 3422 24444455555442 24566655 234467777777765 8766654
No 322
>PRK14099 glycogen synthase; Provisional
Probab=28.02 E-value=2.3e+02 Score=24.92 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcCeeeecceeecc--hhhh
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQANHFIGNCISSFT--AFVK 104 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~~FIGNcvSSFT--a~V~ 104 (132)
+.+++.+..+.+. +++-|.+.++.....++|++..++.+-+++.+ .....+-.++.+.||.|+=- |.|- ..++
T Consensus 311 d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~P--S~~E~fGl~~ 386 (485)
T PRK14099 311 DLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVP--SRFEPCGLTQ 386 (485)
T ss_pred HHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEEC--CccCCCcHHH
Confidence 4455555544432 56666666543333444444433322233333 33344444555678888753 2233 3356
Q ss_pred hhhhcCCC
Q psy9357 105 RHRDVKGL 112 (132)
Q Consensus 105 reR~~~G~ 112 (132)
.|=+..|.
T Consensus 387 lEAma~G~ 394 (485)
T PRK14099 387 LCALRYGA 394 (485)
T ss_pred HHHHHCCC
Confidence 66666664
No 323
>COG1827 Predicted small molecule binding protein (contains 3H domain) [General function prediction only]
Probab=27.95 E-value=1.5e+02 Score=23.40 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=29.8
Q ss_pred CccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc
Q psy9357 15 YGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN 55 (132)
Q Consensus 15 ~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~ 55 (132)
.|+.+...-+|+.++.-+-++++-.. +++.+...||..|
T Consensus 104 yG~i~~~l~v~~~edve~fv~~Le~s--~~~~l~~ltdg~h 142 (168)
T COG1827 104 YGEITASLDVKDREDVERFVEKLEES--GAKPLSELTDGVH 142 (168)
T ss_pred ecccccccccCCHHHHHHHHHHHHHc--CCceeeecCCcee
Confidence 45666677799999988866655543 8899999999876
No 324
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=27.87 E-value=65 Score=22.69 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHh
Q psy9357 26 SVETVVRQLKRVVREH 41 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~ 41 (132)
|.+.|++.||+|+++-
T Consensus 63 sPegIv~~vKeWRa~n 78 (85)
T PF01320_consen 63 SPEGIVKEVKEWRASN 78 (85)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 6899999999999985
No 325
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=27.79 E-value=1.6e+02 Score=23.97 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEec---CCcccHHHHHHhhccCCcEEE-e--CC--C---chHHHHHHHhhcCeeeecce
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVAT---DNNNLNEPLKEAFKRTEIRIV-P--SD--Q---SPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaT---D~~~~~~eLk~~l~~~~~~vv-~--l~--~---~~~vDl~Il~~A~~FIGNcv 96 (132)
..|.+++-+....- +.|-+||.| |...+.++-+++|++.|++.+ . +. + .+.+ ...+..||...=++-
T Consensus 14 ~~i~~~~~~lag~~-~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~-~~~l~~ad~I~~~GG 91 (250)
T TIGR02069 14 REILREFVSRAGGE-DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENA-IALLSNATGIFFTGG 91 (250)
T ss_pred HHHHHHHHHHhCCC-CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHH-HHHHhhCCEEEEeCC
Confidence 44777776666554 779999988 333467888899998887433 2 22 2 2333 345667776544444
Q ss_pred ee
Q psy9357 97 SS 98 (132)
Q Consensus 97 SS 98 (132)
.+
T Consensus 92 nq 93 (250)
T TIGR02069 92 DQ 93 (250)
T ss_pred CH
Confidence 43
No 326
>KOG2836|consensus
Probab=27.63 E-value=1e+02 Score=24.29 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-------CCchHHHHHH
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-------DQSPHVDLAI 84 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-------~~~~~vDl~I 84 (132)
|+-..|-+-|.+ ++++ |+++|-=--|+..--.. |++.|+.|..+ |..+.||-|.
T Consensus 25 PtnaTln~fieE-LkKy-gvttvVRVCe~TYdt~~----lek~GI~Vldw~f~dg~ppp~qvv~~w~ 85 (173)
T KOG2836|consen 25 PTNATLNKFIEE-LKKY-GVTTVVRVCEPTYDTTP----LEKEGITVLDWPFDDGAPPPNQVVDDWL 85 (173)
T ss_pred CCchhHHHHHHH-HHhc-CCeEEEEecccccCCch----hhhcCceEeecccccCCCCchHHHHHHH
Confidence 554444444443 3444 66666544444433222 45568888875 2266777664
No 327
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=27.63 E-value=63 Score=19.90 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy9357 24 FPSVETVVRQLKRVVREH 41 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~ 41 (132)
=|++++|.+++.+.+..+
T Consensus 20 PPDLdel~r~l~~kl~~~ 37 (42)
T PF12221_consen 20 PPDLDELFRKLQDKLGGL 37 (42)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 699999999998877653
No 328
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=27.61 E-value=1.5e+02 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCC
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQ 76 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~ 76 (132)
+++.+.++++ +++.|+||....+ .+.++-+.++..+++|...|+
T Consensus 181 ~dl~~~i~~~-~vd~ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP~ 226 (451)
T TIGR03023 181 DDLEELIREG-EVDEVYIALPLAAEDRILELLDALEDLTVDVRLVPD 226 (451)
T ss_pred HHHHHHHHhc-CCCEEEEeeCcccHHHHHHHHHHHHhcCCEEEEeCc
Confidence 4566677777 9999999995433 356666666666777766554
No 329
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=27.58 E-value=2.1e+02 Score=19.71 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=21.7
Q ss_pred CCcEEEEecCCc-ccHHHHHHhhccCC--cEEEeC
Q psy9357 43 QIKYIFVATDNN-NLNEPLKEAFKRTE--IRIVPS 74 (132)
Q Consensus 43 ~lk~VfIaTD~~-~~~~eLk~~l~~~~--~~vv~l 74 (132)
+++-|+|+.|.. .-.+++++.++..+ |.++.-
T Consensus 59 ~v~~v~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~ 93 (142)
T cd02968 59 DVQVVFISVDPERDTPEVLKAYAKAFGPGWIGLTG 93 (142)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEEC
Confidence 389999999875 44667777776654 554443
No 330
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=27.57 E-value=66 Score=24.57 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=23.7
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. +.-++|+++|++.|++|+-+
T Consensus 2 kI~igsDhaG~~lK~~l~~~L~~~g~eV~D~ 32 (148)
T TIGR02133 2 RVVLGHDHAGFEYKEALWLDLAAHEPEVCDV 32 (148)
T ss_pred EEEEEeCchhHHHHHHHHHHHHHCCCEEEEC
Confidence 589999866 46788999999888888865
No 331
>KOG2331|consensus
Probab=27.48 E-value=2.1e+02 Score=26.31 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=55.1
Q ss_pred ccCCCHHHHHHHHHHHHHHh-CCCcEEEEec--CC--cccHHHHHHhhccC-----CcEEE-eCCC---chHHHHHHHhh
Q psy9357 22 LCFPSVETVVRQLKRVVREH-GQIKYIFVAT--DN--NNLNEPLKEAFKRT-----EIRIV-PSDQ---SPHVDLAILSQ 87 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~-~~lk~VfIaT--D~--~~~~~eLk~~l~~~-----~~~vv-~l~~---~~~vDl~Il~~ 87 (132)
--+|.+.+.++++.+++++. ++-+.++.-| |. -+|.+||++.=+.. |+-.- ..++ .....++-..|
T Consensus 182 ~~i~~l~~F~~~Lt~~~~~~~p~~~ViWYDSV~~~G~L~WQ~eLne~N~~Ffd~cdg~~~NY~Wke~~l~rsa~~~~~~r 261 (526)
T KOG2331|consen 182 AKIPNLIQFVSHLTKVLHSSVPGGLVIWYDSVTDDGQLHWQNELNEMNRKFFDACDGIFMNYNWKEKHLERSAEQAGDRR 261 (526)
T ss_pred hhCccHHHHHHHHHHHHhhcCCCceEEEEeeeeecCeeehhhhhhhhcchhhhhcceeeeecccccchHHHHHHhhhhhh
Confidence 45799999999999998874 5667777655 43 36999988765532 22111 1132 45566777779
Q ss_pred cCeeeec------ceeecchhhhhh
Q psy9357 88 ANHFIGN------CISSFTAFVKRH 106 (132)
Q Consensus 88 A~~FIGN------cvSSFTa~V~re 106 (132)
+|+|+|= |+--|+.....+
T Consensus 262 ~~v~~GiDVf~Rg~~ggf~~~~s~~ 286 (526)
T KOG2331|consen 262 HRVFMGIDVFGRGCVGGFHCDQSLE 286 (526)
T ss_pred hceEEEeEEEecccccccchhHHHH
Confidence 9999984 344465555444
No 332
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=27.47 E-value=1.6e+02 Score=24.57 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecC-CcccHHHHHHhhccCCcEEEeC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATD-NNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD-~~~~~~eLk~~l~~~~~~vv~l 74 (132)
-||..+|.+-++ .+++. +++.||+-.- ++...+.|.+.+ |++++.+
T Consensus 235 eps~~~l~~l~~-~ik~~-~v~~If~e~~~~~~~~~~la~e~---g~~v~~l 281 (311)
T PRK09545 235 QPGAQRLHEIRT-QLVEQ-KATCVFAEPQFRPAVIESVAKGT---SVRMGTL 281 (311)
T ss_pred CCCHHHHHHHHH-HHHHc-CCCEEEecCCCChHHHHHHHHhc---CCeEEEe
Confidence 478777765544 44554 8999999884 334555555444 7787776
No 333
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=27.33 E-value=2.1e+02 Score=23.95 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEI 69 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~ 69 (132)
+++++.+.+....+.++++|-||..- +.+++++.|+..++
T Consensus 10 ~~~~l~~~~~~~~~~~~~livtd~~~~~~~~~~l~~~L~~~g~ 52 (345)
T cd08195 10 LLKELGELLAKLPKGSKILIVTDENVAPLYLEKLKAALEAAGF 52 (345)
T ss_pred hHhHHHHHHHhccCCCeEEEEECCchHHHHHHHHHHHHHhcCC
Confidence 34555554443324588999998654 67889999987653
No 334
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=27.28 E-value=1.5e+02 Score=24.10 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=51.1
Q ss_pred HHHHhCCCcEEEEec-CCcc-cHHHHHHhhccCCcEEEeCCC--chHHHHHHHhhcCeeeecceeecchhhhhh
Q psy9357 37 VVREHGQIKYIFVAT-DNNN-LNEPLKEAFKRTEIRIVPSDQ--SPHVDLAILSQANHFIGNCISSFTAFVKRH 106 (132)
Q Consensus 37 ~~~~~~~lk~VfIaT-D~~~-~~~eLk~~l~~~~~~vv~l~~--~~~vDl~Il~~A~~FIGNcvSSFTa~V~re 106 (132)
++..+.+++.||+.- .+.. --.++...|.+.|..++.+.| .+..-+..++.-|++|+=.+|-.|.-+.+-
T Consensus 123 av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~ 196 (281)
T COG1737 123 AVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEA 196 (281)
T ss_pred HHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHH
Confidence 333334889888887 4444 467788999888999888844 333367788999999999888888766543
No 335
>PF11181 YflT: Heat induced stress protein YflT
Probab=27.14 E-value=1.4e+02 Score=20.76 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHH
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLK 61 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk 61 (132)
+.+.++++.+|..+..+...-+.+||.|-....++.|.
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI~Vva~d~~~~~~l~ 43 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDIYVVAKDKDRTERLA 43 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccEEEEEcCchHHHHHH
Confidence 46788999999999998558899999993333334333
No 336
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=27.13 E-value=1.9e+02 Score=22.85 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=49.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEe---C---------CC--chHHHHHH
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVP---S---------DQ--SPHVDLAI 84 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~---l---------~~--~~~vDl~I 84 (132)
.....-+.+.+.+|+..+.... +.+.|+|.- .+.+.++.+.+.|+..+..+|. + .+ ...+=..+
T Consensus 38 ~~~~~~~~~~~~~ql~~~~~~~-~~~aikiG~l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~L 116 (246)
T PF08543_consen 38 FDIEPVDSEMIKAQLDALLEDM-KFDAIKIGYLGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREEL 116 (246)
T ss_dssp EEEEE--HHHHHHHHHHHHHTS-C-SEEEE-S-SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHC
T ss_pred EEEEECCHHHHHHHHHHhcccc-cccEEEEcccCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhcc
Confidence 3455667789999999999887 899999987 7777888899999766666553 1 11 22222236
Q ss_pred HhhcCeeeecc
Q psy9357 85 LSQANHFIGNC 95 (132)
Q Consensus 85 l~~A~~FIGNc 95 (132)
+.+||+.+-|.
T Consensus 117 lp~AdiitPN~ 127 (246)
T PF08543_consen 117 LPLADIITPNL 127 (246)
T ss_dssp GGG-SEEE-BH
T ss_pred CCcCeEEeCCH
Confidence 78999998885
No 337
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.13 E-value=1.7e+02 Score=22.72 Aligned_cols=52 Identities=27% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcC
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQAN 89 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~ 89 (132)
|...|.++..++ +++-.|||.-+-. . .....++.+.. +-.-.+|.||..+|+
T Consensus 13 Vk~~i~r~A~r~-~~~v~~Van~~~~-~------~~~~~i~~v~V~~g~DaaD~~Iv~~a~ 65 (150)
T COG1671 13 VKDEIYRVAERM-GLKVTFVANFPHR-V------PPSPEIRTVVVDAGFDAADDWIVNLAE 65 (150)
T ss_pred hHHHHHHHHHHh-CCeEEEEeCCCcc-C------CCCCceeEEEecCCcchHHHHHHHhCC
Confidence 667777788888 9999999874311 0 01123333333 446678999998874
No 338
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=27.06 E-value=2.3e+02 Score=20.02 Aligned_cols=62 Identities=11% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHHHHHHhhcCeee
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFI 92 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FI 92 (132)
.-++.-++ ..... +...+.+.|.-..+.+-++.+- +.|++|+-+-........+-..||.||
T Consensus 86 ~l~~d~~~-~~~~~-~~d~ivLvSgD~Df~~~i~~lr-~~G~~V~v~~~~~~~s~~L~~~~d~f~ 147 (149)
T cd06167 86 ALAIDALE-LAYKR-RIDTIVLVSGDSDFVPLVERLR-ELGKRVIVVGFEAKTSRELRKAADRFI 147 (149)
T ss_pred HHHHHHHH-Hhhhc-CCCEEEEEECCccHHHHHHHHH-HcCCEEEEEccCccChHHHHHhCCccc
Confidence 33344343 33333 6788888884334554444433 348888877222566666667777665
No 339
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=26.93 E-value=2.2e+02 Score=24.18 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCccc-HHH-HHHhhccCCcEEEeCCCchHHHHHHHhhcCeeee
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNNNL-NEP-LKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIG 93 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~~~-~~e-Lk~~l~~~~~~vv~l~~~~~vDl~Il~~A~~FIG 93 (132)
+..+-..+++- +++=|+||+|.++- +.. |-.+-+.++|..+..+....+-.+|.......||
T Consensus 137 in~VtklIekk-KAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~eLG~AIGkktraVVA 200 (266)
T PTZ00365 137 LNHVTDLVEYK-KAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLGKLVHQKTAAVVA 200 (266)
T ss_pred hHHHHHHHHhC-CccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHHHHHHhCCCCceEEE
Confidence 34444555554 89999999998763 222 2233345577776666666677777665444444
No 340
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=26.86 E-value=1.5e+02 Score=21.46 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCC
Q psy9357 34 LKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSD 75 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~ 75 (132)
+.+.+++. .++-|+||.|.++ ....+..+=+..++..+...
T Consensus 34 v~kaikkg-ka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~ 76 (117)
T TIGR03677 34 VTKAVERG-IAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVK 76 (117)
T ss_pred HHHHHHcC-CccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeC
Confidence 33444443 7899999999865 35777766666677655443
No 341
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.82 E-value=1.5e+02 Score=17.66 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCc---------------EEEEecCCcccHHHHHHhhccCCcEE
Q psy9357 24 FPSVETVVRQLKRVVREHGQIK---------------YIFVATDNNNLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk---------------~VfIaTD~~~~~~eLk~~l~~~~~~v 71 (132)
+|+....+.++-..+.+. +++ .+++-.|. .+.+.+.|++.||++
T Consensus 6 ~~d~pG~L~~i~~~l~~~-~~nI~~i~~~~~~~~~~~~v~~~ve~---~~~~~~~L~~~G~~v 64 (65)
T cd04882 6 VPDKPGGLHEILQILSEE-GINIEYMYAFVEKKGGKALLIFRTED---IEKAIEVLQERGVEL 64 (65)
T ss_pred eCCCCcHHHHHHHHHHHC-CCChhheEEEccCCCCeEEEEEEeCC---HHHHHHHHHHCCceE
Confidence 466666677777777665 222 22222232 677888888777765
No 342
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=26.64 E-value=3.6e+02 Score=22.18 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=22.2
Q ss_pred HHHHHHhhcCeeeecceeecchhhhhhhhcCCCCC-CcccC
Q psy9357 80 VDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPS-SFWAF 119 (132)
Q Consensus 80 vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps-~F~g~ 119 (132)
-=.+++++|+.||||= |+-.. .=.+.|.|+ .+||-
T Consensus 255 el~ali~~a~l~v~nD----SGp~H-lAaA~g~P~v~lfGp 290 (352)
T PRK10422 255 ELGALIDHAQLFIGVD----SAPAH-IAAAVNTPLICLFGA 290 (352)
T ss_pred HHHHHHHhCCEEEecC----CHHHH-HHHHcCCCEEEEECC
Confidence 3457889999999996 22222 224667775 66663
No 343
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=26.62 E-value=68 Score=24.19 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=23.0
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|+|++|.. +.-++|+++|++.|++|+-+
T Consensus 1 KI~igsDh~g~~lK~~i~~~L~~~g~eV~D~ 31 (140)
T PF02502_consen 1 KIAIGSDHAGFELKEAIKEYLEEKGYEVIDF 31 (140)
T ss_dssp EEEEEE-GGGHHHHHHHHHHHHHTTEEEEEE
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 588999866 36788999999889998876
No 344
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=26.60 E-value=1.1e+02 Score=22.95 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=25.8
Q ss_pred HHHhhccCCcEEEeC-CCchHHHHHHHhhcCeeeecce
Q psy9357 60 LKEAFKRTEIRIVPS-DQSPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 60 Lk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~~FIGNcv 96 (132)
|++.++. +.+++.. .....+++..-+++|.+|++..
T Consensus 146 l~~~~~~-~~~~~~~~s~~~~~~~L~~g~vD~~v~~~~ 182 (250)
T TIGR01096 146 LKDYFKP-GVDIVEYDSYDNANMDLKAGRIDAVFTDAS 182 (250)
T ss_pred HHHhccC-CcEEEEcCCHHHHHHHHHcCCCCEEEeCHH
Confidence 4444432 4555555 3478899999999999999875
No 345
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=26.51 E-value=1.9e+02 Score=22.49 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=40.7
Q ss_pred cccccCCccccccccCCCHHHHHHHHHHHHHHh--CCCcEEEEec--CCcccHHHHHHhhccC--CcEEEeC-CC-----
Q psy9357 9 LGYRNEYGVATEELCFPSVETVVRQLKRVVREH--GQIKYIFVAT--DNNNLNEPLKEAFKRT--EIRIVPS-DQ----- 76 (132)
Q Consensus 9 ~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~--~~lk~VfIaT--D~~~~~~eLk~~l~~~--~~~vv~l-~~----- 76 (132)
.||++.....+.+. =|.+.-|.+.|++.+.++ .|++.++..- +-+-|-.|.=-.|++. +++.+.. |.
T Consensus 7 TGyR~~eL~~f~~~-~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~ 85 (177)
T PF06908_consen 7 TGYRPYELGIFNEK-DPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPFENQGN 85 (177)
T ss_dssp EE--GGGGT--SS---HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESSB-TTT
T ss_pred EecChhhcCCCCCC-chhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcccchhh
Confidence 38877766665443 566777777777766654 4766544322 3334655555555542 4555543 32
Q ss_pred -----chHHHHHHHhhcCeee
Q psy9357 77 -----SPHVDLAILSQANHFI 92 (132)
Q Consensus 77 -----~~~vDl~Il~~A~~FI 92 (132)
...-=..|+.+||+.+
T Consensus 86 ~W~~~~q~~y~~il~~aD~v~ 106 (177)
T PF06908_consen 86 NWNEANQERYQSILEQADFVV 106 (177)
T ss_dssp TS-HHHHHHHHHHHHH-SEEE
T ss_pred cCCHHHHHHHHHHHHhCCEEE
Confidence 2233356888999775
No 346
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=26.51 E-value=2.8e+02 Score=20.73 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccH-HHHHHhhccCCcEEEe
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLN-EPLKEAFKRTEIRIVP 73 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~-~eLk~~l~~~~~~vv~ 73 (132)
+.+++.+++.++.. ++..|+++--.-+.+ +.++.+.++.++.|+.
T Consensus 161 ~~~~~~~~~l~~~~-~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid 206 (216)
T PF01177_consen 161 EILAEAARELIKED-GADAIILGCTHLPLLLGAIEALEEELGIPVID 206 (216)
T ss_dssp HHHHHHHHHHHHCT-TSSEEEEESTTGGGGHHHHHHHHHTCSSEEEE
T ss_pred HHHHHHHHHHhccC-CCCEEEECCCchHHHHHHHHhhcccCCCEEEc
Confidence 34555555554455 999999997555555 6666666655777774
No 347
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=26.51 E-value=46 Score=27.09 Aligned_cols=19 Identities=21% Similarity=0.672 Sum_probs=15.6
Q ss_pred hhhhhhcCCCCCCcccCCC
Q psy9357 103 VKRHRDVKGLPSSFWAFPI 121 (132)
Q Consensus 103 V~reR~~~G~ps~F~g~~~ 121 (132)
-.--+.+.|++..|||+..
T Consensus 120 k~~f~~VNGf~n~f~GWGg 138 (219)
T cd00899 120 REQFRKVNGFSNAYWGWGG 138 (219)
T ss_pred HHHHHHhCCcCCcCccCCc
Confidence 3556789999999999963
No 348
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.43 E-value=2.7e+02 Score=22.95 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=45.6
Q ss_pred ccccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CC-----------cccHHHHHHhhccCCcEEEeC-CCchHHHHH
Q psy9357 18 ATEELCFPSVETVVRQLKRVVREHGQIKYIFVAT-DN-----------NNLNEPLKEAFKRTEIRIVPS-DQSPHVDLA 83 (132)
Q Consensus 18 lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~-----------~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~ 83 (132)
+----|...-++.+.++-+.+++. +.+-++..+ |+ .+++.+|+++.++.|+.+++- -+..++|.+
T Consensus 30 ~iaGPCsie~~~~~~~~A~~lk~~-g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 30 IIAGPCAVESEEQMVKVAEKLKEL-GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred EEEeCCcCCCHHHHHHHHHHHHHc-CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 444668887666666666777777 899999884 21 226788888888889988875 445555554
No 349
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=26.19 E-value=2.9e+02 Score=20.95 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc-EEEe-CCCchHHHH-HHHhhcCeeeecceeecchh
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI-RIVP-SDQSPHVDL-AILSQANHFIGNCISSFTAF 102 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~-~vv~-l~~~~~vDl-~Il~~A~~FIGNcvSSFTa~ 102 (132)
.++.+++.++...++.++++-+++.. .+..+++++..++.+. ..+. ++..+.-|+ .++++||++|....+.-...
T Consensus 216 ~~~~l~~~~~~~~~~~~~~~l~i~G~--~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~ 293 (374)
T cd03817 216 NIDFLIRAFARLLKEEPDVKLVIVGD--GPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGL 293 (374)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEeC--CchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcCh
Confidence 35666666666655532455444433 2334555555443332 2233 244433342 56778999997665422234
Q ss_pred hhhhhhcCCCC
Q psy9357 103 VKRHRDVKGLP 113 (132)
Q Consensus 103 V~reR~~~G~p 113 (132)
..-|=...|.|
T Consensus 294 ~~~Ea~~~g~P 304 (374)
T cd03817 294 VLLEAMAAGLP 304 (374)
T ss_pred HHHHHHHcCCc
Confidence 45566777877
No 350
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=26.12 E-value=88 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
-||+++++++|...++.. +.++|=|.||=+
T Consensus 234 ~atldd~v~hI~h~v~~~-G~dhVglGsDf~ 263 (313)
T COG2355 234 RATLDDLVRHIDHFVELV-GIDHVGLGSDFD 263 (313)
T ss_pred CCCHHHHHHHHHHHHHhc-CcceeEeccccc
Confidence 469999999999999998 999999999743
No 351
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=26.11 E-value=44 Score=27.11 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeC---CC----chHHHHH-------------HHhhcCeeeecc
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS---DQ----SPHVDLA-------------ILSQANHFIGNC 95 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l---~~----~~~vDl~-------------Il~~A~~FIGNc 95 (132)
++.=-|+-=|-++--+|+++++++..++ +.. +| .-+++.+ ..||+||+++|-
T Consensus 41 gl~P~~~vGDfDSv~~e~~~~~~~~~~~-~~f~~eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl 112 (212)
T COG1564 41 GLVPDLAVGDFDSVSEELLAYYKEKTVT-IKFPAEKDSTDLELALDEALERGADEIVILGALGGRLDHALANL 112 (212)
T ss_pred CCCccEEEecccccCHHHHHHHhhcCcc-eecChhhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHH
Confidence 5565666667777777777777765555 443 22 3444443 346777777774
No 352
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=25.78 E-value=1.5e+02 Score=21.70 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=17.5
Q ss_pred hHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC
Q psy9357 78 PHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 78 ~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
..++.+|-++.|..|.+..++-... .++-...|.|
T Consensus 46 ~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ip 80 (264)
T cd06267 46 EALELLLSRRVDGIILAPSRLDDEL-LEELAALGIP 80 (264)
T ss_pred HHHHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCC
Confidence 4455555566666666555544433 2222334444
No 353
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=25.51 E-value=2.1e+02 Score=24.32 Aligned_cols=70 Identities=10% Similarity=0.189 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccC-CcEEEe--C-----CCchHHHHHHHhhcCeeeec
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRT-EIRIVP--S-----DQSPHVDLAILSQANHFIGN 94 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~-~~~vv~--l-----~~~~~vDl~Il~~A~~FIGN 94 (132)
...+++++|++.++++ ++|||.. ++- ..+.+||+.|+.. .+.|++ + .....- -+-.-.+++-|+
T Consensus 7 ~K~~~v~el~~~l~~~---~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~--~~~~L~~~l~G~ 81 (330)
T PRK04019 7 WKKEEVEELKELIKSY---PVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEE--DLEKLEDYLEGQ 81 (330)
T ss_pred HHHHHHHHHHHHHHhC---CEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcc--cHHHHHhhccCC
Confidence 3678899999999977 8999988 644 3799999999863 245554 1 111100 022345778888
Q ss_pred ceeecc
Q psy9357 95 CISSFT 100 (132)
Q Consensus 95 cvSSFT 100 (132)
+-=-||
T Consensus 82 ~alift 87 (330)
T PRK04019 82 VALIFT 87 (330)
T ss_pred EEEEEE
Confidence 866666
No 354
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=25.37 E-value=91 Score=22.29 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=40.4
Q ss_pred ccCCccccccccCCCHHHHHHHHHHHHHHh--------CCCcEEEEecCCcccHHHHHHhhccCCc
Q psy9357 12 RNEYGVATEELCFPSVETVVRQLKRVVREH--------GQIKYIFVATDNNNLNEPLKEAFKRTEI 69 (132)
Q Consensus 12 ~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~--------~~lk~VfIaTD~~~~~~eLk~~l~~~~~ 69 (132)
.+-.|+++..+.+-|..++-+-++++-+.- .|+..=-|..++.+.+++++++|++.|+
T Consensus 31 Hp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~~~~~Ls~LT~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 31 HPVYGEITGNLNISSRRDVDKFIEKLEKSKAKPLSSLTGGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp ETTTEEEEEEEEE-SHHHHHHHHHHHHH--S--STTGGGGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHHHhccCCcchHHhcCCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 455678888999999999888888776642 2455555666666788889999887664
No 355
>PRK14098 glycogen synthase; Provisional
Probab=25.25 E-value=3.3e+02 Score=23.97 Aligned_cols=85 Identities=6% Similarity=0.086 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcCeeeecceeecchhhhh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQANHFIGNCISSFTAFVKR 105 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~r 105 (132)
++.+++.+.++.+ . +++=|.+.++...+.++|++..++.+-+|.-+ ......=..|.+.||+|+=-..+-=-..++.
T Consensus 322 ~d~li~a~~~l~~-~-~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~l 399 (489)
T PRK14098 322 AELLAESLEKLVE-L-DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQM 399 (489)
T ss_pred HHHHHHHHHHHHh-c-CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHH
Confidence 4556666666554 2 67777777654334455655554333223222 1111111357789999983211100123455
Q ss_pred hhhcCCCC
Q psy9357 106 HRDVKGLP 113 (132)
Q Consensus 106 eR~~~G~p 113 (132)
|=+..|.|
T Consensus 400 EAma~G~p 407 (489)
T PRK14098 400 FAMSYGTI 407 (489)
T ss_pred HHHhCCCC
Confidence 55566653
No 356
>PRK14701 reverse gyrase; Provisional
Probab=25.21 E-value=1e+02 Score=32.13 Aligned_cols=92 Identities=11% Similarity=0.188 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccH----HHHHHhhccC--CcEEEe---------------C--CC-----
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLN----EPLKEAFKRT--EIRIVP---------------S--DQ----- 76 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~----~eLk~~l~~~--~~~vv~---------------l--~~----- 76 (132)
++.+.+++.|+++.+ ++..|+||||++.+= .++.+++... .++.+. + .+
T Consensus 685 ~~~~~~~~~lr~l~~---~ad~viiatD~DrEGE~I~~~i~~~~~~~~~~i~R~~fs~lT~~aI~~A~~nlr~~d~~l~~ 761 (1638)
T PRK14701 685 DDAKENIKAMRELAH---EVDEILIGTDPDTEGEKIAWDIRNVLAPYGPNIKRIEFHEVTRRAILKAIKEARDIDENRVK 761 (1638)
T ss_pred ccHHHHHHHHHHHHH---hCCeEEECCCCChhhHHHHHHHHHHhccCCCCeeEEEEccCCHHHHHHHHhCCCCCchhHHH
Confidence 455667777777765 679999999999742 2355555322 232222 1 11
Q ss_pred ----chHHHHHHHhh-----------cCeeeecceeecch-hhhhhhhcCCCCCCcccC
Q psy9357 77 ----SPHVDLAILSQ-----------ANHFIGNCISSFTA-FVKRHRDVKGLPSSFWAF 119 (132)
Q Consensus 77 ----~~~vDl~Il~~-----------A~~FIGNcvSSFTa-~V~reR~~~G~ps~F~g~ 119 (132)
-...|.+|+-. ...=+|-|.|-.=+ -|.|++++..+|..||..
T Consensus 762 A~~aRr~~D~~iG~nlSr~l~~~~~~~~lS~GRVQTPtL~~Iv~Re~ei~~~~~~~~~i 820 (1638)
T PRK14701 762 AQIVRRIEDRWIGFELSQKLWEVFEDRNLSAGRVQTPVLGWIIQRYKEFTESKVPFLGI 820 (1638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCceeecccccchhhhhHhhHHHHhcCCCceEEE
Confidence 24567666541 12456666664444 458899987789999964
No 357
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.13 E-value=2e+02 Score=18.55 Aligned_cols=42 Identities=5% Similarity=-0.031 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
++++.+++...=..+-|-+|.+.....+.++.+..|.+++..
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEE
Confidence 456666666223557788888888999999999888888754
No 358
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.11 E-value=2.6e+02 Score=24.01 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=8.3
Q ss_pred hcCeeeecce
Q psy9357 87 QANHFIGNCI 96 (132)
Q Consensus 87 ~A~~FIGNcv 96 (132)
+.|.+|||..
T Consensus 371 ~pdliig~~~ 380 (428)
T cd01965 371 PVDLLIGNSH 380 (428)
T ss_pred CCCEEEECch
Confidence 5999999863
No 359
>PRK09224 threonine dehydratase; Reviewed
Probab=25.05 E-value=77 Score=28.36 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCccccccccCCCHHHHHHHHHHHHHHh-------C----CCcEEEEe--c-CCcccHHHHHHhhccCCcEEEeC-CC--
Q psy9357 14 EYGVATEELCFPSVETVVRQLKRVVREH-------G----QIKYIFVA--T-DNNNLNEPLKEAFKRTEIRIVPS-DQ-- 76 (132)
Q Consensus 14 e~~~lt~~~C~Ps~~~I~~~ik~~~~~~-------~----~lk~VfIa--T-D~~~~~~eLk~~l~~~~~~vv~l-~~-- 76 (132)
+....+....+|+.....+++.+.+... + +--.|+|. + |..+.+++|.+.|+..|+++..+ .+
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~gy~~~~ls~ne~ 404 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLGGRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHGYPVVDLSDDEL 404 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhccCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcCCCeEECCCCHH
Confidence 3456777888999888888888877742 0 12235544 4 34456999999999989999988 33
Q ss_pred -chHHHHHHHhhcC
Q psy9357 77 -SPHVDLAILSQAN 89 (132)
Q Consensus 77 -~~~vDl~Il~~A~ 89 (132)
.-|+--.|.||+.
T Consensus 405 ~k~h~r~~~g~~~~ 418 (504)
T PRK09224 405 AKLHVRYMVGGRPP 418 (504)
T ss_pred HHHHHHhccCCCCC
Confidence 6778777777773
No 360
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=24.98 E-value=57 Score=26.87 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=25.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
-+++.++|+++|+++.+-. .++.++|++|.-
T Consensus 272 ~vE~~e~v~~ri~~a~~~~-~~~~l~~sPdCG 302 (324)
T PF01717_consen 272 EVESPEEVADRIEEALEYV-PLEQLWLSPDCG 302 (324)
T ss_dssp S--THHHHHHHHHHHHTTS--GGGEEEEESST
T ss_pred CcCCHHHHHHHHHHHHhcC-ccccEEEcCCCC
Confidence 6789999999999999998 899999999843
No 361
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=24.90 E-value=2e+02 Score=21.94 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=20.1
Q ss_pred HHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 36 RVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 36 ~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
+.+.+.++++.|+|+|+. +++++.++..+++++.
T Consensus 35 ~~l~~~~~~~~ivv~t~~----~~i~~~~~~~~~~v~~ 68 (238)
T PRK13368 35 ERAAQAAGVEEVYVATDD----QRIEDAVEAFGGKVVM 68 (238)
T ss_pred HHHHhcCCCCeEEEECCh----HHHHHHHHHcCCeEEe
Confidence 333332268899999975 3455555555665543
No 362
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=24.90 E-value=3.3e+02 Score=24.50 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=50.6
Q ss_pred cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc--c--cHHHHHHhhccCCcEEEeC-C----C-----chHHHH
Q psy9357 17 VATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNN--N--LNEPLKEAFKRTEIRIVPS-D----Q-----SPHVDL 82 (132)
Q Consensus 17 ~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~--~--~~~eLk~~l~~~~~~vv~l-~----~-----~~~vDl 82 (132)
.++....+|.++.+++.|.+.+++. ++|.|.+|.+ - -.--|..+|+..|.++... | + ...++.
T Consensus 30 ~l~~p~~l~~~~~a~~~i~~~i~~~---~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~ 106 (539)
T TIGR00644 30 DLPDPFLLKDMEKAVERIIEAIENN---EKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALRE 106 (539)
T ss_pred hcCChhhcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHH
Confidence 3455567899999999999888864 8999998543 3 2445777777777655432 2 2 123444
Q ss_pred HHHhhcCeee--ecceeecch
Q psy9357 83 AILSQANHFI--GNCISSFTA 101 (132)
Q Consensus 83 ~Il~~A~~FI--GNcvSSFTa 101 (132)
.+....+.+| .++.+++-.
T Consensus 107 ~~~~~~~LiI~vD~G~~~~~~ 127 (539)
T TIGR00644 107 AIENGVSLIITVDNGISAHEE 127 (539)
T ss_pred HHhcCCCEEEEeCCCcccHHH
Confidence 4333446555 555554433
No 363
>KOG3010|consensus
Probab=24.88 E-value=18 Score=30.47 Aligned_cols=46 Identities=26% Similarity=0.218 Sum_probs=29.1
Q ss_pred EecCCc-ccHHHHHHhhccC----Cc-----EEEeC-CCchHHHHHHHhhcCeeeec
Q psy9357 49 VATDNN-NLNEPLKEAFKRT----EI-----RIVPS-DQSPHVDLAILSQANHFIGN 94 (132)
Q Consensus 49 IaTD~~-~~~~eLk~~l~~~----~~-----~vv~l-~~~~~vDl~Il~~A~~FIGN 94 (132)
||||-+ .|++-+++..+.. +. +.+.| --..-|||+++++|=|.--+
T Consensus 59 IatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdl 115 (261)
T KOG3010|consen 59 IATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDL 115 (261)
T ss_pred eeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhch
Confidence 799955 5788777666531 11 11222 11567999999999887544
No 364
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=24.85 E-value=1.8e+02 Score=20.62 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=19.6
Q ss_pred CcEEEEecCCcc-----cHHHHHHhhc---cCCcEEEeC
Q psy9357 44 IKYIFVATDNNN-----LNEPLKEAFK---RTEIRIVPS 74 (132)
Q Consensus 44 lk~VfIaTD~~~-----~~~eLk~~l~---~~~~~vv~l 74 (132)
.+.|++.||..+ -.++++++++ +.++.|+.+
T Consensus 97 ~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i 135 (170)
T cd01465 97 VNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTL 135 (170)
T ss_pred eeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 377999998653 2455555553 356777665
No 365
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=24.78 E-value=82 Score=26.00 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=33.4
Q ss_pred EEEEecCCcccHHHHHHhhccC--CcEEEeC--CCchHHHHHH--HhhcCeeeecce
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRT--EIRIVPS--DQSPHVDLAI--LSQANHFIGNCI 96 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~--~~~vv~l--~~~~~vDl~I--l~~A~~FIGNcv 96 (132)
+||.|..=..-++||.+.|.+. +++|.-- ...+..-|++ .+.+|+||.--.
T Consensus 4 ~V~aAasL~~~~~ei~~~Fe~~~~gvkv~~~~~gSg~L~~Qi~e~Gap~DVfisAd~ 60 (273)
T TIGR03730 4 KIFHAGSLSVPFEEMEKEFEAKHPNVDVQREAAGSVAAVRKITELGKPADILASADY 60 (273)
T ss_pred EEEEccCcHHHHHHHHHHHHhhCCCceEEEEeCcHHHHHHHHHHcCCCeeEEEeCCH
Confidence 4666666666778888888743 5665543 3356667775 677888876553
No 366
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=24.64 E-value=2.3e+02 Score=25.98 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhcc---CCcEEEeC-CCchHHHHHHHhhcCeeeecc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKR---TEIRIVPS-DQSPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~---~~~~vv~l-~~~~~vDl~Il~~A~~FIGNc 95 (132)
.++.+++++|+++.+.- .++.|++=-|... -++||.+++.+ .|-.|+.+ ..-.+=.-||++.||..+=|-
T Consensus 76 ~~l~~i~~~i~~A~~D~-~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s~~YylAs~AD~I~~~p 154 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDR-RIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNP 154 (584)
T ss_pred cCHHHHHHHHHHHhcCC-CceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccccchhhhhhhhCCEEEECC
Confidence 47899999999999996 9999999876431 47889998864 35566666 434567888999999876554
Q ss_pred --------eeecchhhhhhhhcCCCCC
Q psy9357 96 --------ISSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 96 --------vSSFTa~V~reR~~~G~ps 114 (132)
+++-..+.+..=+-.|...
T Consensus 155 ~G~v~~~G~~~~~~~~k~~ldKlGV~~ 181 (584)
T TIGR00705 155 MGSVDLHGFYTETLFYKGMLDKLGVRW 181 (584)
T ss_pred CceEEeeceecccccHHHHHHHcCCeE
Confidence 4444445555555566443
No 367
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=24.63 E-value=82 Score=27.55 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=29.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
.-++|.++|.+.|++.++.+ +.+.+||..|.-
T Consensus 285 ~~VEsveEI~~rI~~ale~i-~~e~lwVNPDCG 316 (344)
T PRK06052 285 TELETPEVIKKRLEKAYSIF-GDRIKYVGPDCG 316 (344)
T ss_pred CCCCCHHHHHHHHHHHHHhC-ChhhEEECCCCC
Confidence 46889999999999999999 999999999954
No 368
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=24.09 E-value=1.6e+02 Score=27.98 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcc----------cHHHHHHhhccCCcEEEeC---CCchHHHHHHHh-h-----
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNN----------LNEPLKEAFKRTEIRIVPS---DQSPHVDLAILS-Q----- 87 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----------~~~eLk~~l~~~~~~vv~l---~~~~~vDl~Il~-~----- 87 (132)
.|.|......+...+ +|.++-|--|.+. +.+..++.|+.+||.|+.. -|...|+.+|-. +
T Consensus 161 mEGvs~EA~slAG~l-~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dk 239 (663)
T COG0021 161 MEGVSHEAASLAGHL-KLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDK 239 (663)
T ss_pred hcccHHHHHHHHhhc-CCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 466777778888888 8999888777654 6888999999999999965 456777777743 2
Q ss_pred -----cCeeeecceeecc------------hhhhhhhhcCCCCCCcccCC
Q psy9357 88 -----ANHFIGNCISSFT------------AFVKRHRDVKGLPSSFWAFP 120 (132)
Q Consensus 88 -----A~~FIGNcvSSFT------------a~V~reR~~~G~ps~F~g~~ 120 (132)
+.--||-+..+-- .-|+.-|+..|.+..-|-.+
T Consensus 240 PtlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp 289 (663)
T COG0021 240 PTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVP 289 (663)
T ss_pred CeEEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecC
Confidence 3456787765522 23456666666664444433
No 369
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=24.07 E-value=67 Score=25.64 Aligned_cols=50 Identities=10% Similarity=0.268 Sum_probs=36.2
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc-CCcEEE
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR-TEIRIV 72 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~-~~~~vv 72 (132)
+.|-|-+++|++.|++.+.+. +++.|+ .|+....++-|.++|++ .+.+|.
T Consensus 173 ~~i~~~~~~i~~~i~~~l~~~-~~~~v~-LtGG~a~ipgl~e~l~~~lg~~v~ 223 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIEGQ-GVKDLY-LVGGACSFSGFADVFEKQLGLNVI 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCEEE-EECchhcchhHHHHHHHHhCCCcc
Confidence 467788899999999999887 788876 67766666666666654 244443
No 370
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=23.81 E-value=1.9e+02 Score=22.85 Aligned_cols=25 Identities=4% Similarity=-0.121 Sum_probs=12.8
Q ss_pred chHHHHHHHhh--cCeeeecceeecch
Q psy9357 77 SPHVDLAILSQ--ANHFIGNCISSFTA 101 (132)
Q Consensus 77 ~~~vDl~Il~~--A~~FIGNcvSSFTa 101 (132)
...|+..|-.. .++-+.+.....+.
T Consensus 103 ~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 103 KEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 34555555432 33555666555544
No 371
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=23.51 E-value=1.8e+02 Score=22.70 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCcEEEEec--CCcccHHHHHHhhccCCcEEEe
Q psy9357 32 RQLKRVVREHGQIKYIFVAT--DNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaT--D~~~~~~eLk~~l~~~~~~vv~ 73 (132)
..+.+.+++. +.++|++++ .+.+-++.|.+++++ ++++.
T Consensus 141 ~~ai~~L~~~-G~~~I~~~~ll~~~~gl~~l~~~~p~--v~i~~ 181 (209)
T PRK00129 141 IAAIDLLKKR-GAKNIKVLCLVAAPEGIKALEEAHPD--VEIYT 181 (209)
T ss_pred HHHHHHHHHc-CCCEEEEEEEecCHHHHHHHHHHCCC--cEEEE
Confidence 3444555565 899999998 888889999999974 55554
No 372
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.44 E-value=4.1e+02 Score=21.73 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=30.0
Q ss_pred HHHHHHhhccCCcEEEeC--CCchHHH-HHHHhhcCeee------e-ccee-----ecchhhhhhhhcCCCCC
Q psy9357 57 NEPLKEAFKRTEIRIVPS--DQSPHVD-LAILSQANHFI------G-NCIS-----SFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 57 ~~eLk~~l~~~~~~vv~l--~~~~~vD-l~Il~~A~~FI------G-NcvS-----SFTa~V~reR~~~G~ps 114 (132)
.+++.+++++.|+..|.+ |..+.-. ..|+..+.-|| | ++.+ .....|++-|...+.|-
T Consensus 131 ~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv 203 (258)
T PRK13111 131 AEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPV 203 (258)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcE
Confidence 444455555556655554 3322111 23666666666 3 4442 24456677777666553
No 373
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=23.33 E-value=1.1e+02 Score=28.90 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=33.8
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhc
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFK 65 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~ 65 (132)
.--+|+.++|++.|+++++.+ +.+.++|++|..= -.++-..+|+
T Consensus 692 s~~ve~~eei~~~i~~a~~~i-~~erl~vsPdCGL~tr~~~~~~~~L~ 738 (750)
T TIGR01371 692 SPRVPSVEEMADLIEKALQVL-PAERLWVNPDCGLKTRNWEEVIASLK 738 (750)
T ss_pred CCCcCCHHHHHHHHHHHHHhc-CcceEEEeCCCCCCcCCHHHHHHHHH
Confidence 345899999999999999988 7899999999652 2344444444
No 374
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=23.33 E-value=1.5e+02 Score=21.32 Aligned_cols=13 Identities=0% Similarity=0.041 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q psy9357 29 TVVRQLKRVVREH 41 (132)
Q Consensus 29 ~I~~~ik~~~~~~ 41 (132)
.+...++..+...
T Consensus 13 ~~~~~l~~~L~~~ 25 (226)
T TIGR02154 13 AIRELIAYNLEKA 25 (226)
T ss_pred HHHHHHHHHHHHC
Confidence 3344455555443
No 375
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=23.29 E-value=2e+02 Score=22.29 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCC--cEEEe
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTE--IRIVP 73 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~--~~vv~ 73 (132)
+...+++..+++.+++. ++++|+- ..- ..+.+|++.|+..| ++|++
T Consensus 6 e~K~~~v~el~e~~~~s---~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~K 56 (175)
T COG0244 6 EWKKELVAELKELIKES---PSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVK 56 (175)
T ss_pred HHHHHHHHHHHHHHhhC---CEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEh
Confidence 56788999999999976 7888776 433 47999999999755 56665
No 376
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=23.28 E-value=4.6e+02 Score=22.16 Aligned_cols=84 Identities=12% Similarity=0.273 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc-EEEeC-CCchHHH-HHHHhhcCeeeeccee------
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI-RIVPS-DQSPHVD-LAILSQANHFIGNCIS------ 97 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~-~vv~l-~~~~~vD-l~Il~~A~~FIGNcvS------ 97 (132)
++.+++.++.+.++.++++-+.|..+ ++.++|++..++.+. +.|.+ ...++-| ..+++.||.||--+.+
T Consensus 237 ~~~ll~a~~~l~~~~~~~~l~ivG~G--~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~ 314 (406)
T PRK15427 237 LHVAIEACRQLKEQGVAFRYRILGIG--PWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDM 314 (406)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEECc--hhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCc
Confidence 45566666655554324554544433 345778887776665 44554 3333333 3688999999965432
Q ss_pred -ecchhhhhhhhcCCCC
Q psy9357 98 -SFTAFVKRHRDVKGLP 113 (132)
Q Consensus 98 -SFTa~V~reR~~~G~p 113 (132)
.| ..+-.|=++.|.|
T Consensus 315 Eg~-p~~llEAma~G~P 330 (406)
T PRK15427 315 EGI-PVALMEAMAVGIP 330 (406)
T ss_pred cCc-cHHHHHHHhCCCC
Confidence 12 3456677888888
No 377
>KOG1226|consensus
Probab=23.19 E-value=87 Score=30.29 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=42.3
Q ss_pred cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecC-CcccHHHHHHhhccCCcEEEeC-CC-chHHHHHHHh
Q psy9357 17 VATEELCFPSVETVVRQLKRVVREHGQIKYIFVATD-NNNLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAILS 86 (132)
Q Consensus 17 ~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD-~~~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~Il~ 86 (132)
..+-.+++||+.+++++|. .. +++.+|-.|- .-++..+|..+++.. .|-.+ .| .-++.|++-+
T Consensus 301 t~S~~qdyPSia~l~~kl~----~~-ni~~IFAVt~~~~~~Y~~l~~lip~s--~vg~l~~DSsNi~qLI~~a 366 (783)
T KOG1226|consen 301 TQSTTQDYPSIAQLAQKLA----DN-NINTIFAVTKNSQSLYEELSNLIPGS--AVGVLSEDSSNIVQLIIEA 366 (783)
T ss_pred ceecCCCCCcHHHHHHHHh----hh-cchhHHHHhhhhhhHHHhhhhhCCcc--cccccccchhhHHHHHHHH
Confidence 4566899999999988765 33 6788888884 446788888888632 22234 33 5555565554
No 378
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.18 E-value=2e+02 Score=23.03 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=30.8
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc-ccHHHHHHhhccCCcEEEeC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNN-NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~-~~~~eLk~~l~~~~~~vv~l 74 (132)
--||..++.+ |.+.+++. +++.||+-.-.+ ...+.|...-++.+++++.+
T Consensus 188 ~~ps~~~l~~-l~~~ik~~-~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 188 TEPSPADIAA-FQNAIKNR-QIDALIVNPQQASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred CCCCHHHHHH-HHHHHHhC-CCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEee
Confidence 3467666554 44444554 899999887433 45565555445557777765
No 379
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=23.02 E-value=2.1e+02 Score=23.95 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecC
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATD 52 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD 52 (132)
-|+++|++.++.... . +++.|++..|
T Consensus 70 ls~eeI~e~~~~~~~-~-G~~~i~l~gG 95 (343)
T TIGR03551 70 LSLEEIAERAAEAWK-A-GATEVCIQGG 95 (343)
T ss_pred CCHHHHHHHHHHHHH-C-CCCEEEEEeC
Confidence 399999999997766 4 8999999975
No 380
>PRK14724 DNA topoisomerase III; Provisional
Probab=23.01 E-value=1.2e+02 Score=29.73 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
+..+..++.|++++++- ++..|++|||++.+ ..++-+++.
T Consensus 82 ~~~k~q~~~Ik~l~k~~-~~~~II~AtD~DREGElI~~~I~~~~~ 125 (987)
T PRK14724 82 DKTKTRLNAVVKLAKRK-DVTELVNACDAGREGELIFRLIEQYAG 125 (987)
T ss_pred cchHHHHHHHHHHHhhC-CCCeEEECCCCCcchhHHHHHHHHHhC
Confidence 34445677777777765 78899999999874 233555554
No 381
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=22.80 E-value=1.3e+02 Score=26.22 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCc
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEI 69 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~ 69 (132)
+-..|.+|+.++++++ +.+++++-||..+ -++=+++.++=.++
T Consensus 82 ad~~I~~qld~vl~~~-~~~~~i~VsDGaeDE~vlPiIqSr~~V~sV 127 (344)
T PF04123_consen 82 ADRKIAEQLDEVLSKF-DPDSAIVVSDGAEDERVLPIIQSRVPVDSV 127 (344)
T ss_pred hHHHHHHHHHHHHHhC-CCCEEEEEecChhhhhhhHhhhccCceEEE
Confidence 4567999999999999 9999999998664 36666666654445
No 382
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=22.78 E-value=4e+02 Score=22.91 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=49.0
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeC--C-----C-chHHHHHHHhhcCe-eeecceeecchhhhhhhhcC---
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS--D-----Q-SPHVDLAILSQANH-FIGNCISSFTAFVKRHRDVK--- 110 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l--~-----~-~~~vDl~Il~~A~~-FIGNcvSSFTa~V~reR~~~--- 110 (132)
++.-|+|+|.+....+.+..+|+. |+.||.- + + ...||-+=-..-.+ +||++|-==.+-|+|.-...
T Consensus 60 ~iDVViIctPs~th~~~~~~~L~a-G~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp 138 (324)
T TIGR01921 60 DVDVLILCMGSATDIPEQAPYFAQ-FANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLP 138 (324)
T ss_pred CCCEEEEcCCCccCHHHHHHHHHc-CCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCC
Confidence 789999999777678999999975 8888874 2 1 44555422211233 44777765444455554443
Q ss_pred -CCCCCcccCC
Q psy9357 111 -GLPSSFWAFP 120 (132)
Q Consensus 111 -G~ps~F~g~~ 120 (132)
|..-+|||=.
T Consensus 139 ~g~~yt~wG~g 149 (324)
T TIGR01921 139 KGQTYTFWGPG 149 (324)
T ss_pred CCcceeccCCC
Confidence 4556999843
No 383
>PRK08173 DNA topoisomerase III; Validated
Probab=22.74 E-value=1.2e+02 Score=29.33 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
.+..++.|++++++. ++..|++|||++.+ ..++-+++.
T Consensus 81 ~~~q~~~ik~l~k~~-~~d~Ii~AtD~dREGElI~~~I~~~~~ 122 (862)
T PRK08173 81 TESRLKVLTKLIKRK-DVTRLINACDAGREGELIFRLIAQHAK 122 (862)
T ss_pred HHHHHHHHHHHHhhC-CCCEEEECCCCChhHHHHHHHHHHHhC
Confidence 345566677777654 78999999999874 233555554
No 384
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=22.71 E-value=3.5e+02 Score=22.45 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=44.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEE-Ee-cCCcc-------cHHHHHHhhccCCcEEEeC--C-C-----chHHHHHH
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIF-VA-TDNNN-------LNEPLKEAFKRTEIRIVPS--D-Q-----SPHVDLAI 84 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~Vf-Ia-TD~~~-------~~~eLk~~l~~~~~~vv~l--~-~-----~~~vDl~I 84 (132)
+..|+-....+.+-+.++.+ +-++|. |. .|.+. -.+.|.+.|++.+++|+.. . . ..++..+
T Consensus 122 R~~p~~~~~~~a~~~~~~~~-~w~~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~i- 199 (405)
T cd06385 122 RTGPTHKKLGEFVLHIHQHF-GWRSHAMLIYSDNKVDDRPCYFAMEGLYMELKKNNITVVDLVFEEDDLINYTTLLQDI- 199 (405)
T ss_pred EecCchHHHHHHHHHHHHhC-CCeEEEEEEEecCcccccchHHHHHHHHHHHHhCCeEEEEeeccCCchhhHHHHHHHH-
Confidence 55666666677777778877 787754 33 33321 2577888998778877653 2 1 3455543
Q ss_pred HhhcCeeee
Q psy9357 85 LSQANHFIG 93 (132)
Q Consensus 85 l~~A~~FIG 93 (132)
-..++.+|.
T Consensus 200 k~~~~iii~ 208 (405)
T cd06385 200 KQKGRVIYV 208 (405)
T ss_pred hhcceEEEE
Confidence 456788876
No 385
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=22.59 E-value=62 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=17.4
Q ss_pred ccccccCCCHHHHHHHHHHHHHHhCCCcEEE
Q psy9357 18 ATEELCFPSVETVVRQLKRVVREHGQIKYIF 48 (132)
Q Consensus 18 lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~Vf 48 (132)
+-..-.+||+++++++|-.++... ++|+|-
T Consensus 73 ~p~~y~yPsmd~LAe~l~~Vl~~f-~lk~vI 102 (283)
T PF03096_consen 73 LPEGYQYPSMDQLAEMLPEVLDHF-GLKSVI 102 (283)
T ss_dssp --TT-----HHHHHCTHHHHHHHH-T---EE
T ss_pred ccccccccCHHHHHHHHHHHHHhC-CccEEE
Confidence 333447999999999999999998 888764
No 386
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.47 E-value=2.2e+02 Score=22.90 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=30.6
Q ss_pred HHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC----CC---chHHHHHHHhhc
Q psy9357 38 VREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS----DQ---SPHVDLAILSQA 88 (132)
Q Consensus 38 ~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l----~~---~~~vDl~Il~~A 88 (132)
+++. +++-|-+||+++-+ -.=|++.|+..+++|-++ |- .-.+|..-+++|
T Consensus 130 i~~~-~v~EVIlAt~~tvEGe~Ta~yi~~~lk~~~ikvtRlA~GiP~G~~ley~D~~TL~~A 190 (195)
T TIGR00615 130 LQEE-SVKEVILATNPTVEGEATALYIARLLQPFGVKVTRIASGLPVGGDLEYADEVTLARA 190 (195)
T ss_pred HhcC-CCcEEEEeCCCCchHHHHHHHHHHHhhhcCCcEEeeeecCCCCcceeecCHHHHHHH
Confidence 3444 78999999976642 233556666656766664 32 455666666655
No 387
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.47 E-value=1.4e+02 Score=25.49 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=50.3
Q ss_pred cEEEEecCCc--ccHHHHHHhhccCCcEEEeC-CC-chHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC---CCcc
Q psy9357 45 KYIFVATDNN--NLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP---SSFW 117 (132)
Q Consensus 45 k~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p---s~F~ 117 (132)
++|=|-.+.. ..+.||++.|+.+|++++.. +. ...=|+-=+++|..-|--|-.+-....+...+..|.| ..|+
T Consensus 159 ~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~ 238 (410)
T cd01968 159 YDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFY 238 (410)
T ss_pred CcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcC
Confidence 4565555322 25789999999999999875 54 4666778889999888655333333445555556876 3466
Q ss_pred cCC
Q psy9357 118 AFP 120 (132)
Q Consensus 118 g~~ 120 (132)
|+.
T Consensus 239 G~~ 241 (410)
T cd01968 239 GIR 241 (410)
T ss_pred cHH
Confidence 664
No 388
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.41 E-value=3.9e+02 Score=21.02 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc-EEEeC-CCchHHHHHHHhhcCeeeecceeecchhh
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI-RIVPS-DQSPHVDLAILSQANHFIGNCISSFTAFV 103 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~-~vv~l-~~~~~vDl~Il~~A~~FIGNcvSSFTa~V 103 (132)
.++.+++.++.+.++. +.+-+.+.++ ...+++++..+..+. ..+.+ .....+. .+++.||.||.-..+-=...+
T Consensus 211 ~~~~li~a~~~l~~~~-~~~l~i~G~g--~~~~~~~~~~~~~~~~~~v~~~g~~~~~~-~~~~~~d~~v~ps~~E~~~~~ 286 (371)
T cd04962 211 RIDDVIRIFAKVRKEV-PARLLLVGDG--PERSPAERLARELGLQDDVLFLGKQDHVE-ELLSIADLFLLPSEKESFGLA 286 (371)
T ss_pred CHHHHHHHHHHHHhcC-CceEEEEcCC--cCHHHHHHHHHHcCCCceEEEecCcccHH-HHHHhcCEEEeCCCcCCCccH
Confidence 5566777776665554 5554444443 334566666655443 22333 3333343 457889999965432112345
Q ss_pred hhhhhcCCCC
Q psy9357 104 KRHRDVKGLP 113 (132)
Q Consensus 104 ~reR~~~G~p 113 (132)
.-|=+..|.|
T Consensus 287 ~~EAma~g~P 296 (371)
T cd04962 287 ALEAMACGVP 296 (371)
T ss_pred HHHHHHcCCC
Confidence 6677888887
No 389
>cd08975 BaFpgNei_N_3 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. One exception is mouse Nei-like glycosylase 3 (Neil3) which forms a Schiff base int
Probab=22.38 E-value=1.3e+02 Score=21.66 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=35.7
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCC--cc----cHHHHHHhhccCCcE
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDN--NN----LNEPLKEAFKRTEIR 70 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~--~~----~~~eLk~~l~~~~~~ 70 (132)
-+|..+.+.+.|+..+..- .+.+|.|..+. .- .-+++.++|....+.
T Consensus 2 ELPEVEtv~r~L~~~l~G~-~I~~v~v~~~~~~~~~~~~~~~~~~~~L~G~~i~ 54 (117)
T cd08975 2 ELPESATLSKQLNETLKGK-RITDVFPATSPHKFTWYNGDPNEYDELLVGKRIT 54 (117)
T ss_pred CchhHHHHHHHHHHHcCCC-EEeEEEECCCcccceeccCChHHHHHhCCCCEEE
Confidence 3799999999999888765 78999988773 22 257888888765453
No 390
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=22.37 E-value=79 Score=21.76 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q psy9357 28 ETVVRQLKRVVRE 40 (132)
Q Consensus 28 ~~I~~~ik~~~~~ 40 (132)
++++..+.+....
T Consensus 7 d~~~~~~~d~~~~ 19 (121)
T cd03209 7 DMLEQQAMDLRMG 19 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 391
>cd08976 BaFpgNei_N_4 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. This N-terminal proline is conserved in this family. Escherichia coli Fpg prefers 8
Probab=22.27 E-value=1.5e+02 Score=20.88 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEI 69 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~ 69 (132)
+|..+.|++.|+..+..- .+.+|.|..+..- -.+++.++|....+
T Consensus 3 LPEVe~~~~~l~~~~~g~-~I~~v~~~~~~~~~~~~~~~~~~L~G~~i 49 (117)
T cd08976 3 LPEVEVQKQYLERTSLHR-KIVEVEVGDDKILGEPKATLREVLEGRTF 49 (117)
T ss_pred CcchHHHHHHHHHHhCCC-EEEEEEECCCCEeccCHHHHHhhcCCCEE
Confidence 799999999999877764 7888988765421 15678888865444
No 392
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=22.24 E-value=1.7e+02 Score=24.70 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHH---HHhhccCCcEEE
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPL---KEAFKRTEIRIV 72 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eL---k~~l~~~~~~vv 72 (132)
|+ .++.+.+..+++.+ +.++|.|..|++.+...| .++++..++.++
T Consensus 121 p~-~~~~~ai~~lv~~~-~wkkvavly~~d~g~~~l~~~~~~~~~~g~~v~ 169 (363)
T cd06381 121 PP-VRLNDVMLRLVTEW-RWQKFVYFYDNDYDIRGLQEFLDQLSRQGIDVL 169 (363)
T ss_pred cc-HHHHHHHHHHHHhC-CCeEEEEEEECCchHHHHHHHHHHHHhcCceEE
Confidence 66 46778888888888 999999999888765544 455555566444
No 393
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=22.20 E-value=1.2e+02 Score=25.35 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeecce
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGNcv 96 (132)
++++.+.++.+ + +++|-||.. ...+++.+.|++.++++..+ |+ ...++++==..+|..||=|-
T Consensus 11 l~~l~~~l~~~-g--r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (366)
T PF00465_consen 11 LEELGEELKRL-G--RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG 87 (366)
T ss_dssp GGGHHHHHHCT-T--EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred HHHHHHHHHhc-C--CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45666777776 6 777778752 25789999998777665442 33 45555555668999999887
Q ss_pred eecchhhhhhhhcCC
Q psy9357 97 SSFTAFVKRHRDVKG 111 (132)
Q Consensus 97 SSFTa~V~reR~~~G 111 (132)
.|--...|--....+
T Consensus 88 GS~~D~aK~va~~~~ 102 (366)
T PF00465_consen 88 GSVMDAAKAVALLLA 102 (366)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHhhcc
Confidence 776555554444333
No 394
>PRK01066 porphobilinogen deaminase; Provisional
Probab=21.96 E-value=1.5e+02 Score=24.49 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCcEEEEec--CCcc------------cHHHHHHhhccC--CcEEEeCCCchH---HHH-HHHhhc---Ceeee
Q psy9357 43 QIKYIFVAT--DNNN------------LNEPLKEAFKRT--EIRIVPSDQSPH---VDL-AILSQA---NHFIG 93 (132)
Q Consensus 43 ~lk~VfIaT--D~~~------------~~~eLk~~l~~~--~~~vv~l~~~~~---vDl-~Il~~A---~~FIG 93 (132)
...-+.|-| |... +..||.++|-.- ++-||+++|.|. +.+ +|+.|+ |+||.
T Consensus 47 ~~ei~~i~T~GD~~~~~~L~~iGgkGlFtkele~aLl~g~iDiAVHSlKDlPt~~gl~l~av~~RedprDvLv~ 120 (231)
T PRK01066 47 WFQISTTTTQGDLDQKTPLHLVENTGFFTDDVDFLVLSGQCDLAIHSAKDLPEPPKLTVVAITAGLDPRDLLVY 120 (231)
T ss_pred cEEEEEEeccCcccccccHHHcCCceeeHHHHHHHHHcCCCCEEEecCCcCCCCCCCEEEEEcCCCCCceEEEE
Confidence 567788888 6432 477999999753 467888866443 222 355563 45664
No 395
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=21.96 E-value=2.5e+02 Score=21.66 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~ 66 (132)
+++....+++ +.+.++|+.....-+++|++.|+.
T Consensus 2 ~~~~~~y~~~-gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 2 EELLEQYEKL-GYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHHHHT-TSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCcEEEEeCCCCcCHHHHHHHhcC
Confidence 3455666777 888888887777889999999986
No 396
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=21.89 E-value=4.1e+02 Score=21.07 Aligned_cols=61 Identities=5% Similarity=0.095 Sum_probs=37.3
Q ss_pred HHHHHHhhccCCcEEEeC--C-C----chHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCCCCcc
Q psy9357 57 NEPLKEAFKRTEIRIVPS--D-Q----SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFW 117 (132)
Q Consensus 57 ~~eLk~~l~~~~~~vv~l--~-~----~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps~F~ 117 (132)
++.+.+++++.|+.+... . + ...+|+++..++|-+|-.+.......+.+..+..|+|--++
T Consensus 78 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~ 145 (341)
T PRK10703 78 IEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM 145 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEE
Confidence 455566666668776654 1 1 56788888889998886654333344454444357775444
No 397
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=21.86 E-value=1.5e+02 Score=24.35 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCcEEEEec------CCc-ccHHHHHHhhccCCc
Q psy9357 33 QLKRVVREHGQIKYIFVAT------DNN-NLNEPLKEAFKRTEI 69 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaT------D~~-~~~~eLk~~l~~~~~ 69 (132)
.|.++++.+ |-.+|||+- |.. .++++|+..|...|+
T Consensus 22 ~ll~li~~L-Gp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv 64 (241)
T PF11735_consen 22 ALLELIRFL-GPENVFVSIYESGSWDGTKEALRALDAELDALGV 64 (241)
T ss_pred HHHHHHHHh-CcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCC
Confidence 666677777 778888764 222 267777777776665
No 398
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.83 E-value=2.7e+02 Score=22.23 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCc-ccHHHHHHhhccCCcEEEeC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNN-NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~-~~~~eLk~~l~~~~~~vv~l 74 (132)
-||..+|.+-++. +++. +++.||+-+-.+ ..++.|.+ ..|++++.+
T Consensus 200 eps~~~l~~l~~~-ik~~-~v~~if~e~~~~~~~~~~la~---~~g~~v~~l 246 (266)
T cd01018 200 EPSPADLKRLIDL-AKEK-GVRVVFVQPQFSTKSAEAIAR---EIGAKVVTI 246 (266)
T ss_pred CCCHHHHHHHHHH-HHHc-CCCEEEEcCCCCcHHHHHHHH---HcCCeEEEe
Confidence 4777777655554 5555 899999877433 34444433 347888877
No 399
>PF11404 Potassium_chann: Potassium voltage-gated channel; InterPro: IPR021105 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. A voltage-dependent potassium channel gene designated Shaw was initially isolated from Drosophila melanogaster (Fruit fly). Subsequently, several vetebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster channel, now constitute the Kv3 family. These channels are thought to play a role in shortening of action potential durations and modulating pre-synaptic neurotransmitter release. In mammals, the family consists of 4 genes (Kv3.1, Kv3.2, Kv3.3 and Kv3.4). Each gene product has its own subcellular location and function. Fast inactivation of voltage-dependent potassium channels controls membrane excitability and signal propagation in central neurons. This occurs by a 'ball-and-chain'-type mechanism where an N-terminal protein inactivation domain occludes the pore from the cytoplasmic side. In Kv3 channels this process is regulated by protein phosphorylation, where phosphorylation of serine residues leads to a reduction or removal of the fast inactivation []. ; PDB: 1ZTN_A 1B4G_A 1B4I_A.
Probab=21.81 E-value=32 Score=20.01 Aligned_cols=7 Identities=57% Similarity=1.203 Sum_probs=4.9
Q ss_pred cceeecc
Q psy9357 94 NCISSFT 100 (132)
Q Consensus 94 NcvSSFT 100 (132)
-||||||
T Consensus 5 vcvss~s 11 (31)
T PF11404_consen 5 VCVSSFS 11 (31)
T ss_dssp SBSSSS-
T ss_pred hhhHhHh
Confidence 3899985
No 400
>COG1978 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.75 E-value=1.2e+02 Score=23.65 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcc
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNN 55 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~ 55 (132)
+...++..||+.+++.+.--+|||.||+.-
T Consensus 10 ~~~~v~eriKeFi~k~~~~ysi~vGtDSqv 39 (152)
T COG1978 10 PKFRVIERIKEFIKKTDKEYSIYVGTDSQV 39 (152)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEEeccchh
Confidence 356788899999877545668999999853
No 401
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=21.72 E-value=1.8e+02 Score=26.57 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCC--cEEE
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTE--IRIV 72 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~--~~vv 72 (132)
-||.++|++.|+ +. +++.|||...+...+-..+++-+..+ +.|+
T Consensus 346 nPS~~dll~ai~----~~-~a~~V~iLPNn~nii~aA~qa~~~~~~~v~vv 391 (530)
T TIGR03599 346 NPSTEDILKAIE----KV-NAKNVFVLPNNKNIILAAEQAAELADKNVVVI 391 (530)
T ss_pred CCCHHHHHHHHH----hC-CCCeEEEecCCccHHHHHHHHHHHhCCcEEEE
Confidence 488888877765 45 88999999977665555555544333 4444
No 402
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=21.72 E-value=1.5e+02 Score=23.67 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=31.5
Q ss_pred EEEecCCcccHHHHHHhhccC-CcEEEeC--CCchHHHHHHHhh-cCeeeecce
Q psy9357 47 IFVATDNNNLNEPLKEAFKRT-EIRIVPS--DQSPHVDLAILSQ-ANHFIGNCI 96 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~-~~~vv~l--~~~~~vDl~Il~~-A~~FIGNcv 96 (132)
||.+..-.+.+++|-++|++. |++|.-. .....+.++.-+. +|+|+.--.
T Consensus 31 v~~a~~~~~~~~~l~~~Fe~~~g~~v~~~~~~Sg~l~~qi~~g~~~Dv~~~a~~ 84 (257)
T PRK10677 31 VFAAASLTNALQDIAAQYKKEKGVDVVSSFASSSTLARQIEQGAPADLFISADQ 84 (257)
T ss_pred EEEecChHHHHHHHHHHHHhhhCCeEEEEecccHHHHHHHHcCCCCCEEEECCH
Confidence 555544456788888888753 5666543 4445555555444 899988754
No 403
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=21.64 E-value=1.4e+02 Score=27.14 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=55.8
Q ss_pred cEEEEecCCc--ccHHHHHHhhccCCcEEEeC--CCchHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCCC---Ccc
Q psy9357 45 KYIFVATDNN--NLNEPLKEAFKRTEIRIVPS--DQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPS---SFW 117 (132)
Q Consensus 45 k~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l--~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps---~F~ 117 (132)
..|=|..+.+ -.+.+|+.+|..+|++|+.. .+...-|+.-+++|..=|=-|-.+...-....++.-|.|- +|+
T Consensus 203 ~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~ 282 (513)
T TIGR01861 203 HVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGF 282 (513)
T ss_pred CeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcC
Confidence 3455555433 35889999999999999976 4577788888999999887776555556666777778773 466
Q ss_pred cCC
Q psy9357 118 AFP 120 (132)
Q Consensus 118 g~~ 120 (132)
|+.
T Consensus 283 Gi~ 285 (513)
T TIGR01861 283 GFE 285 (513)
T ss_pred CHH
Confidence 764
No 404
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=21.50 E-value=1.8e+02 Score=19.61 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=15.2
Q ss_pred CcEEEEecCCcccHHHHHHhh
Q psy9357 44 IKYIFVATDNNNLNEPLKEAF 64 (132)
Q Consensus 44 lk~VfIaTD~~~~~~eLk~~l 64 (132)
.+.|+|+||++..=+++...+
T Consensus 45 ~~~VIiltD~D~aG~~i~~~~ 65 (81)
T cd01027 45 YRGVIILTDPDRKGEKIRKKL 65 (81)
T ss_pred CCEEEEEECCCHHHHHHHHHH
Confidence 488999999998555554444
No 405
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.46 E-value=2.2e+02 Score=17.68 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=21.5
Q ss_pred HHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEE
Q psy9357 37 VVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 37 ~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv 72 (132)
..++. |++.|.|.= ++-....++.++.+..+++++
T Consensus 23 ~a~~~-g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 23 RAKEL-GLKAIAITDHGNLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred HHHHc-CCCEEEEeeCCcccCHHHHHHHHHHcCCeEE
Confidence 34444 888888643 333456777777766666554
No 406
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=21.43 E-value=70 Score=20.48 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=18.1
Q ss_pred EEEEecCCcccHHHHHHhhccCCc
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEI 69 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~ 69 (132)
.|.++|.+.+.+++++.+|.+.|+
T Consensus 23 ~i~~~~~s~~ll~~v~~lL~~lGi 46 (77)
T PF14528_consen 23 RISISSKSKELLEDVQKLLLRLGI 46 (77)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEEEEECCHHHHHHHHHHHHHCCC
Confidence 577788888888888888887776
No 407
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=21.42 E-value=1.8e+02 Score=19.95 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=25.5
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccC---CcEEEe
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRT---EIRIVP 73 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~---~~~vv~ 73 (132)
.|...+.++.+...++ +.- ++.-|.|++|.. ++++++.+.. .|.++.
T Consensus 37 ~C~~~~~~l~~~~~~~-~~~-~~~~i~is~d~~---~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd02971 37 VCTTELCAFRDLAEEF-AKG-GAEVLGVSVDSP---FSHKAWAEKEGGLNFPLLS 86 (140)
T ss_pred cCHHHHHHHHHHHHHH-HHC-CCEEEEEeCCCH---HHHHHHHhcccCCCceEEE
Confidence 4554444444433333 333 788899988764 3455555443 345443
No 408
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=21.34 E-value=1.6e+02 Score=24.65 Aligned_cols=32 Identities=6% Similarity=0.209 Sum_probs=25.5
Q ss_pred CCHHH---HHHHHHHHHHHhCCCcEEEEec-CCcccH
Q psy9357 25 PSVET---VVRQLKRVVREHGQIKYIFVAT-DNNNLN 57 (132)
Q Consensus 25 Ps~~~---I~~~ik~~~~~~~~lk~VfIaT-D~~~~~ 57 (132)
|+.++ +-+.|.+++++. +-|.++|+| |=+|++
T Consensus 160 ~~~~~~~~lG~ai~~al~~~-~~RV~vIaSG~LSH~l 195 (294)
T cd07372 160 EGLGEMDVLGKATREAIRKT-GRRAVLLASNTLSHWH 195 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhc-CCeEEEEEeCcccccC
Confidence 44565 678888888888 899999999 777774
No 409
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.33 E-value=4.3e+02 Score=21.05 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=55.0
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCccc----HHHHHHhhcc-CCcEEEeC-----CC---chHHHHHHHhhc
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNL----NEPLKEAFKR-TEIRIVPS-----DQ---SPHVDLAILSQA 88 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~----~~eLk~~l~~-~~~~vv~l-----~~---~~~vDl~Il~~A 88 (132)
..|+-.+..+.+-+++++..+.++|+|.. |...| .+.++++|++ .+.+++.- ++ .+.|-.+.-..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~v~~i~~~~~ 192 (332)
T cd06344 113 TVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGGGIVVTPCDLSSPDFNANTAVSQAINNGA 192 (332)
T ss_pred eCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHHHHHhcCCeeeeeccCCCCCCCHHHHHHHHHhcCC
Confidence 45777777788888877652389998776 43334 4456667766 36666542 12 345666777788
Q ss_pred Ceeeeccee-ecchhhhhhhhc
Q psy9357 89 NHFIGNCIS-SFTAFVKRHRDV 109 (132)
Q Consensus 89 ~~FIGNcvS-SFTa~V~reR~~ 109 (132)
|+++-.+.. ....+++..|+.
T Consensus 193 d~v~~~~~~~~~~~~~~~~~~~ 214 (332)
T cd06344 193 TVLVLFPDTDTLDKALEVAKAN 214 (332)
T ss_pred CEEEEeCChhHHHHHHHHHHhc
Confidence 888877655 555555655653
No 410
>PRK10949 protease 4; Provisional
Probab=21.28 E-value=3.1e+02 Score=25.55 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCc---c--cHHHHHHhhccC---CcEEEeC-CCchHHHHHHHhhcCeeeec-
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNN---N--LNEPLKEAFKRT---EIRIVPS-DQSPHVDLAILSQANHFIGN- 94 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~---~--~~~eLk~~l~~~---~~~vv~l-~~~~~vDl~Il~~A~~FIGN- 94 (132)
.++.++++.|+++...- .++.|++=-|+. . -++||.++|.+. |-.|+.. ..-.+-..||++.||..+=|
T Consensus 95 ~~l~div~~i~~Aa~D~-rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~~~~~s~~YyLASaAD~I~l~P 173 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDR-NITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVGDSYSQGQYYLASFANKIYLSP 173 (618)
T ss_pred ccHHHHHHHHHHHhcCC-CceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecCccchhhhhhhhCCEEEECC
Confidence 56789999999999886 999999988764 2 368999988643 5567766 33456688889999987655
Q ss_pred -------ceeecchhhhhhhhcCCCCCCccc
Q psy9357 95 -------CISSFTAFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 95 -------cvSSFTa~V~reR~~~G~ps~F~g 118 (132)
++++-+.|.+..=|-.|....++.
T Consensus 174 ~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r 204 (618)
T PRK10949 174 QGVVDLHGFATNGLYYKSLLDKLKVSTHVFR 204 (618)
T ss_pred CceEEEeeeecchhhHHHHHHHcCCeEEEEE
Confidence 555556667766677776554443
No 411
>PRK15138 aldehyde reductase; Provisional
Probab=21.22 E-value=3.3e+02 Score=23.32 Aligned_cols=63 Identities=8% Similarity=0.143 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc-----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN-----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG 93 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~-----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG 93 (132)
..++++-..++. + +++.|-||.. ..++++++.|+ +++++.+ |. ...++++--.++|..||
T Consensus 17 g~~~~l~~~l~~--~-~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 91 (387)
T PRK15138 17 GAIAGLREQIPA--D-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLA 91 (387)
T ss_pred CHHHHHHHHHhc--C-CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 445666666664 3 7888888632 36789999996 4444332 22 34455555668999997
Q ss_pred cce
Q psy9357 94 NCI 96 (132)
Q Consensus 94 Ncv 96 (132)
=|-
T Consensus 92 iGG 94 (387)
T PRK15138 92 VGG 94 (387)
T ss_pred eCC
Confidence 665
No 412
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=21.21 E-value=1.3e+02 Score=20.93 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=23.7
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHhCCCcEEE
Q psy9357 16 GVATEELCFPSVETVVRQLKRVVREHGQIKYIF 48 (132)
Q Consensus 16 ~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~Vf 48 (132)
.+.|+.|+.||.+-+-..|-.++++ ++||
T Consensus 40 ~~~yp~i~~Ps~e~l~~~L~~Li~e----rkIY 68 (80)
T PF10264_consen 40 RKHYPGIAIPSQEVLYNTLGTLIKE----RKIY 68 (80)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHc----Ccee
Confidence 4678889999999999999888886 4555
No 413
>PRK13435 response regulator; Provisional
Probab=21.17 E-value=2.3e+02 Score=19.35 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=11.1
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~v 71 (132)
+|.|..|.......|+..|+..++.+
T Consensus 7 ~iliid~~~~~~~~l~~~l~~~~~~~ 32 (145)
T PRK13435 7 KVLIVEDEALIALELEKLVEEAGHEV 32 (145)
T ss_pred eEEEEcCcHHHHHHHHHHHHhcCCeE
Confidence 34444444444444444444334443
No 414
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=21.11 E-value=4.8e+02 Score=21.93 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=33.3
Q ss_pred cEEEEecCCc----ccHHHHHHhhccCCcEEEeC----CC----chHHHHHHHhh--cCeeeecceee
Q psy9357 45 KYIFVATDNN----NLNEPLKEAFKRTEIRIVPS----DQ----SPHVDLAILSQ--ANHFIGNCISS 98 (132)
Q Consensus 45 k~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l----~~----~~~vDl~Il~~--A~~FIGNcvSS 98 (132)
++++|-||.. .++++|++.|+...+.++.- |. ...++.+--.. +|..||=|-=|
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGS 91 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGRLAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGS 91 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Confidence 8899999864 36888999997544444332 22 23334444434 89888765433
No 415
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=21.06 E-value=4e+02 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.276 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
.+++.+.+..++. +++.+|+-|..
T Consensus 45 ~Ll~~l~~~a~~~-g~~~i~L~t~~ 68 (297)
T cd02169 45 KIVSELINKAYEE-GIFHLFLFTKP 68 (297)
T ss_pred HHHHHHHHHHHHC-CCCEEEEEEcc
Confidence 4667777777776 88888888753
No 416
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=21.03 E-value=1.3e+02 Score=24.88 Aligned_cols=51 Identities=25% Similarity=0.480 Sum_probs=32.9
Q ss_pred ccccCCccccccccCCCHH-HHHHHHHHHHHHhCCCcEEEEec-C-------CcccHHHHHHhhc
Q psy9357 10 GYRNEYGVATEELCFPSVE-TVVRQLKRVVREHGQIKYIFVAT-D-------NNNLNEPLKEAFK 65 (132)
Q Consensus 10 g~~~e~~~lt~~~C~Ps~~-~I~~~ik~~~~~~~~lk~VfIaT-D-------~~~~~~eLk~~l~ 65 (132)
|.+-+..|++...|.|+-. +|+..+ +. +++|.||||- | +-+-+.+|....+
T Consensus 20 g~re~Y~Pis~~~~~s~dP~eia~~l----r~-rgar~vYiADLdaI~g~g~n~d~i~~l~~~~~ 79 (229)
T COG1411 20 GEREEYRPISSRYCLSDDPLEIAEAL----RE-RGARFVYIADLDAILGGGDNADTIRELSSLEK 79 (229)
T ss_pred CCcccccCcceeecCCCChHHHHHHH----hh-ccCceEEeeehHHHhcCCCcHHHHHHHHhhhh
Confidence 4566778999999998754 343333 33 3799999996 4 3334556555443
No 417
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=20.99 E-value=2.6e+02 Score=22.55 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=29.9
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc-ccHHHHHHhhccCCcEEEeC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNN-NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~-~~~~eLk~~l~~~~~~vv~l 74 (132)
--||..+|.+-++ .+++. +++.||+-.-.+ ..++.|.+. .|++++.+
T Consensus 202 ~eps~~~l~~l~~-~ik~~-~v~~if~e~~~~~~~~~~la~~---~g~~v~~l 249 (282)
T cd01017 202 VEPSPKQLAELVE-FVKKS-DVKYIFFEENASSKIAETLAKE---TGAKLLVL 249 (282)
T ss_pred CCCCHHHHHHHHH-HHHHc-CCCEEEEeCCCChHHHHHHHHH---cCCcEEEe
Confidence 3488777655444 46665 899999988533 345554433 36777766
No 418
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=20.98 E-value=3.1e+02 Score=19.38 Aligned_cols=44 Identities=7% Similarity=0.146 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcE
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIR 70 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~ 70 (132)
+.++...+++...++. +-..|+|..|.+- .+-++-.++++.|++
T Consensus 76 ~~~~L~~~L~~~~~~~-~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~ 122 (129)
T TIGR02801 76 DADELLAEIAAALAAN-PDTPVLIRADKTVPYGEVIKVMALLKQAGIE 122 (129)
T ss_pred CHHHHHHHHHHHHhhC-CCceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 4566778888877765 5567999998664 355666666766763
No 419
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=20.93 E-value=1e+02 Score=20.66 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=28.2
Q ss_pred CCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEE
Q psy9357 14 EYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 14 e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~v 71 (132)
|-.-+|-..+ +.+.+++++++|++.. .+|.+.|...|+..
T Consensus 10 ELA~lYfP~~--~~~sA~r~L~rwI~~~----------------~~L~~~L~~~Gy~~ 49 (69)
T PF14053_consen 10 ELAQLYFPDL--TPSSAVRKLRRWIRRN----------------PELLEELEATGYHP 49 (69)
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHHC----------------HHHHHHHHHcCCCC
Confidence 3334454444 7788999999999986 57788887776633
No 420
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.81 E-value=2e+02 Score=20.12 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCcEEEEecCCccc--HHHHHHhhccCCcEEEeC
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNNL--NEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~~--~~eLk~~l~~~~~~vv~l 74 (132)
..+..+....++..-|.|.|+...+ -++++++|++.|+.+...
T Consensus 42 ~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 42 EDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVM 86 (110)
T ss_dssp HHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEE
Confidence 3444455544688999999976653 789999999888877664
No 421
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=20.78 E-value=4.3e+02 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=18.0
Q ss_pred CCcEEEEecCCcccHHHHHHhhc-cCCcEEEe
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFK-RTEIRIVP 73 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~-~~~~~vv~ 73 (132)
.=|+|+|..|+.+.+. |.+.|. ++|.+++.
T Consensus 292 ~Gkrv~I~gd~~~a~~-l~~~L~~ElGm~vv~ 322 (519)
T PRK02910 292 TGKRVFVFGDATHAVA-AARILSDELGFEVVG 322 (519)
T ss_pred cCCEEEEEcCcHHHHH-HHHHHHHhcCCeEEE
Confidence 3367888888766443 444454 46766653
No 422
>KOG0202|consensus
Probab=20.78 E-value=3.8e+02 Score=26.73 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=70.7
Q ss_pred cccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc------------------------------
Q psy9357 7 QCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNN------------------------------ 55 (132)
Q Consensus 7 qC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~------------------------------ 55 (132)
+|..|+...+.-+.++.-++.+.|.++.+++-.+ +||-+-.|| |...
T Consensus 505 rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~--gLRvLalA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~ 582 (972)
T KOG0202|consen 505 RCSTYYGSDGQTKVPLTQASRETILANVYEMGSE--GLRVLALASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGIL 582 (972)
T ss_pred hhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhc--cceEEEEEccCCcccChhhhhhcccccccccccceEEEEEeecc
Confidence 5755544444444566677889999998888765 799998888 5542
Q ss_pred --cHHHHHH---hhccCCcEEEeC-CCchHHHHHHHhhcCeeeecc---eeecchhh------hhhhhcCCCCCCcccCC
Q psy9357 56 --LNEPLKE---AFKRTEIRIVPS-DQSPHVDLAILSQANHFIGNC---ISSFTAFV------KRHRDVKGLPSSFWAFP 120 (132)
Q Consensus 56 --~~~eLk~---~l~~~~~~vv~l-~~~~~vDl~Il~~A~~FIGNc---vSSFTa~V------~reR~~~G~ps~F~g~~ 120 (132)
=.+|.+. .+...|++|+-+ -|....=.+||++--.|=.+- .+++|+.= .+.|++..+..=|.+..
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~ 662 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAE 662 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecC
Confidence 1123333 333458888887 788888889999988554433 15566542 34445555555555544
No 423
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=20.78 E-value=3.6e+02 Score=20.03 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCc--EEEeCCCc--hHHHHHHHhhcCeeeecceeecch
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEI--RIVPSDQS--PHVDLAILSQANHFIGNCISSFTA 101 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~--~vv~l~~~--~~vDl~Il~~A~~FIGNcvSSFTa 101 (132)
.++.+++.++...+..++++-+++. .....+.+++..++.+. .|.-.... ..+. .++.+||.+|....+.-..
T Consensus 213 ~~~~~i~~~~~~~~~~~~~~l~i~G--~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~-~~~~~~di~i~~~~~~~~~ 289 (374)
T cd03801 213 GVDLLLEALAKLRKEYPDVRLVIVG--DGPLREELEALAAELGLGDRVTFLGFVPDEDLP-ALYAAADVFVLPSLYEGFG 289 (374)
T ss_pred CHHHHHHHHHHHhhhcCCeEEEEEe--CcHHHHHHHHHHHHhCCCcceEEEeccChhhHH-HHHHhcCEEEecchhcccc
Confidence 4566666666665553234433333 44455556555433221 22222222 2222 3557799999665443333
Q ss_pred hhhhhhhcCCCC
Q psy9357 102 FVKRHRDVKGLP 113 (132)
Q Consensus 102 ~V~reR~~~G~p 113 (132)
..-.|=...|.|
T Consensus 290 ~~~~Ea~~~g~p 301 (374)
T cd03801 290 LVLLEAMAAGLP 301 (374)
T ss_pred chHHHHHHcCCc
Confidence 445555777777
No 424
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=20.78 E-value=2e+02 Score=29.10 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcc-----------------cHHHHHHhhc-cCCcEEEe
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNNN-----------------LNEPLKEAFK-RTEIRIVP 73 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~~-----------------~~~eLk~~l~-~~~~~vv~ 73 (132)
+.+|-.+++.. +++.|.|-||.+. .++.++++|+ ..|++|+-
T Consensus 540 v~~i~~~~~a~-Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI 599 (1159)
T PRK13030 540 VPQIARQVEAE-GVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLI 599 (1159)
T ss_pred HHHHHHHHHhC-CCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEE
Confidence 44555566777 9999999996533 3678889994 45787764
No 425
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=20.69 E-value=2.2e+02 Score=21.34 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=33.1
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc---------cHHHHHHhhccCCcEEEeC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNN---------LNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---------~~~eLk~~l~~~~~~vv~l 74 (132)
=+|-.++ ..+..+.... +..-||++.|... .++||.+.+....+++.+.
T Consensus 18 g~~~~~~--~~~~~~~~~~-~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akV 75 (132)
T PRK11509 18 GWTPVSE--SRLDDWLTQA-PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIA 75 (132)
T ss_pred CCCcccc--ccHHHHHhCC-CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEE
Confidence 3444444 5566777776 7888999988654 5788888885434666665
No 426
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=20.67 E-value=2.7e+02 Score=21.27 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
.++..+-+.+.+. ++..|+|.|+. +++.+++...+++++.
T Consensus 28 pll~~~l~~l~~~-~i~~ivvv~~~----~~i~~~~~~~~~~v~~ 67 (245)
T PRK05450 28 PMIVRVYERASKA-GADRVVVATDD----ERIADAVEAFGGEVVM 67 (245)
T ss_pred CHHHHHHHHHHhc-CCCeEEEECCc----HHHHHHHHHcCCEEEE
Confidence 4455555555556 78999999975 4455566555666654
No 427
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=20.63 E-value=2.9e+02 Score=23.46 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEec--CCcccHHHHHHhhccCCcEEEeCCC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVAT--DNNNLNEPLKEAFKRTEIRIVPSDQ 76 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaT--D~~~~~~eLk~~l~~~~~~vv~l~~ 76 (132)
=|+.+++++-++.++++.++ -|-|.- -.-+|.-+|.+.....|++.++.|.
T Consensus 201 pp~~eE~i~v~~~AR~~f~~--pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~P~ 253 (275)
T COG1856 201 PPPVEEAIKVVKYARKKFPN--PVSIGCMRPRGEWRVKLDKEAVLAGVDRITFPP 253 (275)
T ss_pred CcCHHHHHHHHHHHHHhCCC--CeeEeecCcCchhHHHHHHHHHHcCCceeecCC
Confidence 48999999999999998754 455554 5557888898888878899988744
No 428
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.55 E-value=2.7e+02 Score=22.03 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=45.5
Q ss_pred HHHHHHHhCCCcEEEEec-CCcc-cHHHHHHhhccCCcEEEeCCC--chHHHHHHHhhcCeeeecceeecchhh
Q psy9357 34 LKRVVREHGQIKYIFVAT-DNNN-LNEPLKEAFKRTEIRIVPSDQ--SPHVDLAILSQANHFIGNCISSFTAFV 103 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaT-D~~~-~~~eLk~~l~~~~~~vv~l~~--~~~vDl~Il~~A~~FIGNcvSSFTa~V 103 (132)
+.++++.+.+++.|||.- +... .-..+...|...|..++...+ .....+..++.-|++|.=..|-.+..+
T Consensus 118 l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~ 191 (278)
T PRK11557 118 LHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERREL 191 (278)
T ss_pred HHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHH
Confidence 333344434789999887 5444 466677778777887776543 333445567889999977666666543
No 429
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=20.49 E-value=3.6e+02 Score=24.24 Aligned_cols=20 Identities=15% Similarity=-0.031 Sum_probs=11.9
Q ss_pred CCchHHHHHHHh-hcCeeeec
Q psy9357 75 DQSPHVDLAILS-QANHFIGN 94 (132)
Q Consensus 75 ~~~~~vDl~Il~-~A~~FIGN 94 (132)
+|.-.+-.+|-. ++|.+||+
T Consensus 378 ~D~~el~~~i~~~~pDLlIgG 398 (457)
T CHL00073 378 PDNYNQIQRIRELQPDLAITG 398 (457)
T ss_pred CCHHHHHHHHhhCCCCEEEcc
Confidence 443333334444 89999999
No 430
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.46 E-value=2.9e+02 Score=21.55 Aligned_cols=47 Identities=17% Similarity=0.024 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEec-CCcc--cHHHHHHhhccCCcEEEeCC
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVAT-DNNN--LNEPLKEAFKRTEIRIVPSD 75 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~--~~~eLk~~l~~~~~~vv~l~ 75 (132)
.+++++.+.+.+++ +-+-+++.+ |..- ....|-++|++.++++...|
T Consensus 66 ~~~~~~~i~~~~~~--g~~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviP 115 (249)
T PRK06136 66 QEEINRLLVDYARK--GKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVP 115 (249)
T ss_pred HHHHHHHHHHHHHC--CCeEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEc
Confidence 34555666555444 345555555 4432 24445555655455444444
No 431
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=20.37 E-value=5e+02 Score=21.51 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCc-------ccHHHHHHhhccCCcEEEeCCCchHHH-HHHHhhcCeeeecceee
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNN-------NLNEPLKEAFKRTEIRIVPSDQSPHVD-LAILSQANHFIGNCISS 98 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~-------~~~~eLk~~l~~~~~~vv~l~~~~~vD-l~Il~~A~~FIGNcvSS 98 (132)
++.+++.++.+.++.++++-+.|..+.. .+.++|++..+..+-.++-+...+.-| ..+++.||+||-. |.
T Consensus 208 ~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~p--S~ 285 (380)
T PRK15484 208 ILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVP--SQ 285 (380)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeC--CC
Confidence 3455666666655554666666554321 234455555444343443332222112 3567899999843 22
Q ss_pred cc---hhhhhhhhcCCCC
Q psy9357 99 FT---AFVKRHRDVKGLP 113 (132)
Q Consensus 99 FT---a~V~reR~~~G~p 113 (132)
+. ..+.-|=++.|.|
T Consensus 286 ~~E~f~~~~lEAma~G~P 303 (380)
T PRK15484 286 VEEAFCMVAVEAMAAGKP 303 (380)
T ss_pred CccccccHHHHHHHcCCC
Confidence 21 2455677888888
No 432
>PF06598 Chlorovi_GP_rpt: Chlorovirus glycoprotein repeat; InterPro: IPR010568 This entry contains a number of repeats found in Chlorovirus glycoproteins. The function of these proteins is unknown.
Probab=20.24 E-value=42 Score=19.92 Aligned_cols=6 Identities=67% Similarity=0.955 Sum_probs=5.0
Q ss_pred eeeecc
Q psy9357 90 HFIGNC 95 (132)
Q Consensus 90 ~FIGNc 95 (132)
|||||+
T Consensus 1 yf~GnG 6 (34)
T PF06598_consen 1 YFIGNG 6 (34)
T ss_pred CeEccc
Confidence 688887
No 433
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.23 E-value=3.3e+02 Score=22.48 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=10.5
Q ss_pred HHHhhcCeeeecc
Q psy9357 83 AILSQANHFIGNC 95 (132)
Q Consensus 83 ~Il~~A~~FIGNc 95 (132)
+++.+||.||||=
T Consensus 247 ~li~~a~l~I~~D 259 (334)
T COG0859 247 ALIAGADLVIGND 259 (334)
T ss_pred HHHhcCCEEEccC
Confidence 3457999999995
No 434
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=20.20 E-value=2.6e+02 Score=21.30 Aligned_cols=7 Identities=0% Similarity=0.354 Sum_probs=3.2
Q ss_pred hhcCeee
Q psy9357 86 SQANHFI 92 (132)
Q Consensus 86 ~~A~~FI 92 (132)
..||||+
T Consensus 119 ~~aD~il 125 (203)
T cd00405 119 GEVDAIL 125 (203)
T ss_pred ccCCEEE
Confidence 3445543
No 435
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=20.18 E-value=3.2e+02 Score=19.22 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
++..+-+.+++. +.+.|+|.+.. +++...+...++++|.-
T Consensus 26 li~~~l~~l~~~-~~~~Ivvv~~~----~~~~~~~~~~~~~~v~~ 65 (160)
T PF12804_consen 26 LIERVLEALREA-GVDDIVVVTGE----EEIYEYLERYGIKVVVD 65 (160)
T ss_dssp HHHHHHHHHHHH-TESEEEEEEST----HHHHHHHTTTTSEEEE-
T ss_pred HHHHHHHHhhcc-CCceEEEecCh----HHHHHHHhccCceEEEe
Confidence 344444555565 68999999966 46666777667888765
No 436
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=20.18 E-value=1.1e+02 Score=20.26 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEecC---CcccHHHHHHhhcc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATD---NNNLNEPLKEAFKR 66 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD---~~~~~~eLk~~l~~ 66 (132)
+++.|++.++.. |+ .||+..| ...+.+++.+++.+
T Consensus 12 ~a~~l~~~L~~~-g~-~v~~d~~~~~g~~~~~~i~~~i~~ 49 (102)
T PF13676_consen 12 FAERLAERLESA-GI-RVFLDRDIPPGEDWREEIERAIER 49 (102)
T ss_dssp CHHHHHHHHHHT-T---EE-GGEE-TTS-HHCCCHHCCTT
T ss_pred HHHHHHHHHhhc-CC-EEEEEEeCCCCCCHHHHHHHHHHh
Confidence 556666666665 66 4555332 22355666666644
No 437
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=20.10 E-value=1.9e+02 Score=20.89 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~ 66 (132)
.+|++.|.+.+.+. +.+.++|+-+. +++-.|++.|..
T Consensus 76 ~~vA~~L~~~~~~~-~~~~LvlvA~p-~~LG~LR~~L~~ 112 (138)
T PF10116_consen 76 REVADRLEKARRAG-KFDRLVLVAPP-RFLGLLREHLSK 112 (138)
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEECH-HHHHHHHHHhCH
Confidence 34555555555565 88999988754 688888888864
No 438
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=20.08 E-value=1.5e+02 Score=25.20 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEec--CCc------------ccHHHHHHhhccC--CcEEEeCCCch-----HHHH-HHHhh
Q psy9357 30 VVRQLKRVVREHGQIKYIFVAT--DNN------------NLNEPLKEAFKRT--EIRIVPSDQSP-----HVDL-AILSQ 87 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaT--D~~------------~~~~eLk~~l~~~--~~~vv~l~~~~-----~vDl-~Il~~ 87 (132)
++++|++....+ ...-|.|.| |.. -|..||.++|-.- ++-||++||.| .+.+ +|+.|
T Consensus 22 V~~~L~~~~p~~-~~ei~~i~T~GD~~~~~~L~~iggkG~Ftkele~aLl~g~iDiAVHSlKDlP~~l~~gl~i~avl~R 100 (295)
T PRK00072 22 VKDRLKAAHPGL-EVELVPIKTKGDKILDVPLAKIGGKGLFVKELEEALLEGEIDIAVHSLKDVPTELPEGLVLAAIPER 100 (295)
T ss_pred HHHHHHHHCCCC-eEEEEEeeccCcccccccHHHcCCcceeHHHHHHHHHcCCCCEEEeccCcCCCCCCCCcEEEEEecC
Confidence 334444333233 567788888 632 1788998888653 45777775522 2222 35555
Q ss_pred c---Ceeeec
Q psy9357 88 A---NHFIGN 94 (132)
Q Consensus 88 A---~~FIGN 94 (132)
. |+||+.
T Consensus 101 ~dprDvlv~~ 110 (295)
T PRK00072 101 EDPRDALVSR 110 (295)
T ss_pred CCCceEEEEC
Confidence 3 577753
Done!