Query psy9357
Match_columns 132
No_of_seqs 101 out of 137
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:04:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zy2_A Putative GDP-fucose pro 100.0 4.8E-50 1.6E-54 339.1 8.7 117 3-120 240-360 (362)
2 4ap5_A GDP-fucose protein O-fu 100.0 2.9E-29 1E-33 210.5 7.9 113 4-121 265-392 (408)
3 2hhc_A NODZ, nodulation fucosy 98.8 2.2E-09 7.5E-14 86.8 2.7 84 20-105 192-295 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.9 4.4E-05 1.5E-09 66.9 10.1 89 21-111 311-421 (526)
5 4f11_A Gamma-aminobutyric acid 87.8 1.5 5.2E-05 34.8 7.0 91 22-113 133-232 (433)
6 3h6g_A Glutamate receptor, ion 87.2 3.1 0.00011 32.6 8.4 94 20-114 115-218 (395)
7 3bfj_A 1,3-propanediol oxidore 83.1 2.1 7.2E-05 34.9 5.8 65 30-95 20-100 (387)
8 3om0_A Glutamate receptor, ion 82.0 5.4 0.00019 31.2 7.6 91 22-113 118-217 (393)
9 3v7q_A Probable ribosomal prot 79.7 4.2 0.00014 27.5 5.5 55 32-87 25-80 (101)
10 1jdp_A NPR-C, atrial natriuret 79.2 9 0.00031 30.5 8.1 88 22-112 133-236 (441)
11 3ox4_A Alcohol dehydrogenase 2 78.6 1.5 5.1E-05 36.1 3.4 70 28-98 16-99 (383)
12 3on1_A BH2414 protein; structu 77.4 4.2 0.00014 27.4 4.9 54 32-86 24-78 (101)
13 3hl0_A Maleylacetate reductase 76.6 2.6 9E-05 34.4 4.3 69 29-98 20-98 (353)
14 1rrm_A Lactaldehyde reductase; 76.4 2.2 7.7E-05 34.7 3.8 65 30-95 18-96 (386)
15 3jzd_A Iron-containing alcohol 74.4 3.4 0.00012 33.8 4.4 69 30-99 23-101 (358)
16 1o2d_A Alcohol dehydrogenase, 73.9 2.1 7.2E-05 34.9 3.1 66 29-96 27-107 (371)
17 4f06_A Extracellular ligand-bi 73.0 20 0.00068 27.8 8.4 85 23-108 119-217 (371)
18 1vlj_A NADH-dependent butanol 72.8 7.6 0.00026 32.0 6.2 65 31-96 31-110 (407)
19 3dzc_A UDP-N-acetylglucosamine 70.8 16 0.00053 29.5 7.5 82 27-114 247-329 (396)
20 4a18_G RPL30; ribosome, eukary 69.8 8.4 0.00029 26.1 4.9 53 33-86 29-83 (104)
21 2l82_A Designed protein OR32; 69.7 10 0.00036 27.8 5.6 52 22-73 56-108 (162)
22 3j21_Z 50S ribosomal protein L 69.6 6.5 0.00022 26.3 4.3 52 32-84 21-74 (99)
23 3lkv_A Uncharacterized conserv 67.1 18 0.00063 27.7 7.0 66 30-95 126-201 (302)
24 3ot5_A UDP-N-acetylglucosamine 66.5 18 0.00061 29.3 7.1 82 27-114 241-323 (403)
25 3uhj_A Probable glycerol dehyd 65.4 3.7 0.00013 34.1 2.8 69 28-99 38-118 (387)
26 1w41_A 50S ribosomal protein L 65.4 11 0.00037 25.2 4.7 54 32-86 22-77 (101)
27 3u5e_c L32, RP73, YL38, 60S ri 64.9 11 0.00037 25.6 4.7 52 33-85 29-82 (105)
28 3nkl_A UDP-D-quinovosamine 4-d 64.6 12 0.00041 25.2 4.9 44 32-76 55-100 (141)
29 3cpq_A 50S ribosomal protein L 63.8 14 0.00049 25.2 5.2 54 33-87 28-83 (110)
30 2lbw_A H/ACA ribonucleoprotein 63.8 21 0.00071 24.8 6.1 51 34-85 28-80 (121)
31 3tqu_A Non-canonical purine NT 63.5 4.5 0.00015 31.3 2.8 31 44-74 4-34 (203)
32 3n0w_A ABC branched chain amin 63.2 30 0.001 26.6 7.5 89 23-113 122-223 (379)
33 3i45_A Twin-arginine transloca 62.7 24 0.00084 27.2 6.9 90 22-113 121-225 (387)
34 1vq8_F 50S ribosomal protein L 61.6 15 0.00051 25.4 5.0 44 43-86 45-90 (120)
35 1vgv_A UDP-N-acetylglucosamine 61.5 35 0.0012 26.0 7.6 79 28-114 223-304 (384)
36 2e4u_A Metabotropic glutamate 61.5 41 0.0014 28.0 8.5 86 22-108 165-266 (555)
37 3lop_A Substrate binding perip 61.3 17 0.00058 27.8 5.7 97 22-120 120-229 (364)
38 3ks9_A Mglur1, metabotropic gl 59.9 30 0.001 28.7 7.3 86 22-108 176-278 (496)
39 3fro_A GLGA glycogen synthase; 59.5 19 0.00064 27.7 5.7 87 26-113 266-356 (439)
40 1jq5_A Glycerol dehydrogenase; 59.4 8.2 0.00028 31.1 3.8 64 30-95 19-94 (370)
41 3eaf_A ABC transporter, substr 59.3 44 0.0015 25.8 7.9 90 22-113 119-225 (391)
42 3i09_A Periplasmic branched-ch 59.0 34 0.0012 26.1 7.1 88 23-112 120-220 (375)
43 3v7e_A Ribosome-associated pro 58.9 12 0.00042 24.3 3.9 46 33-79 18-64 (82)
44 4eyg_A Twin-arginine transloca 58.1 37 0.0013 25.6 7.1 88 23-112 119-219 (368)
45 2fc3_A 50S ribosomal protein L 57.5 16 0.00055 25.4 4.6 45 42-86 43-89 (124)
46 3o21_A Glutamate receptor 3; p 57.5 23 0.00078 28.0 6.0 84 25-113 115-211 (389)
47 3oy2_A Glycosyltransferase B73 57.3 63 0.0022 24.8 8.5 88 26-113 198-299 (413)
48 2aif_A Ribosomal protein L7A; 57.1 17 0.00059 25.8 4.8 46 42-87 56-103 (135)
49 3h5l_A Putative branched-chain 57.0 67 0.0023 25.0 8.7 96 22-118 135-251 (419)
50 2j01_J 50S ribosomal protein L 57.0 12 0.00042 27.5 4.1 72 25-100 4-83 (173)
51 2bfw_A GLGA glycogen synthase; 56.8 25 0.00085 24.2 5.5 88 25-113 50-141 (200)
52 3qek_A NMDA glutamate receptor 55.9 30 0.001 26.8 6.4 90 23-113 119-241 (384)
53 1xbi_A 50S ribosomal protein L 55.4 16 0.00054 25.4 4.3 52 34-86 37-90 (120)
54 1rlg_A 50S ribosomal protein L 54.8 15 0.00052 25.3 4.1 45 42-86 42-88 (119)
55 3lkb_A Probable branched-chain 54.5 57 0.0019 25.0 7.8 93 23-117 122-228 (392)
56 3o85_A Ribosomal protein L7AE; 53.8 22 0.00076 24.8 4.9 52 33-85 38-91 (122)
57 3iz5_f 60S ribosomal protein L 53.6 19 0.00065 25.0 4.4 51 33-84 33-85 (112)
58 1dp4_A Atrial natriuretic pept 53.4 53 0.0018 25.6 7.5 90 21-113 124-232 (435)
59 1k7k_A Hypothetical protein YG 53.2 8.6 0.00029 30.2 2.8 31 44-74 23-53 (221)
60 3ce9_A Glycerol dehydrogenase; 52.2 8.7 0.0003 30.7 2.8 64 31-95 22-96 (354)
61 4gpa_A Glutamate receptor 4; P 51.8 64 0.0022 24.4 7.6 80 33-113 120-210 (389)
62 2car_A Inosine triphosphate py 51.1 16 0.00054 28.0 4.0 32 43-74 8-40 (196)
63 3snr_A Extracellular ligand-bi 50.3 62 0.0021 24.1 7.2 86 22-108 114-212 (362)
64 3sg0_A Extracellular ligand-bi 50.1 72 0.0025 24.0 7.6 91 22-114 138-241 (386)
65 2fcj_A Small toprim domain pro 49.5 19 0.00066 25.5 3.9 31 35-66 42-72 (119)
66 2ale_A SNU13, NHP2/L7AE family 49.4 22 0.00077 25.4 4.3 43 43-85 48-92 (134)
67 1mw9_X DNA topoisomerase I; de 48.5 15 0.00053 32.2 3.9 39 24-65 86-128 (592)
68 2j48_A Two-component sensor ki 47.9 28 0.00095 21.1 4.2 28 46-73 3-30 (119)
69 3iv7_A Alcohol dehydrogenase I 47.4 37 0.0013 27.7 5.9 65 31-98 25-99 (364)
70 3l4e_A Uncharacterized peptida 47.4 19 0.00065 27.1 3.9 72 30-101 14-93 (206)
71 3t3p_B Integrin beta-3; integr 47.2 32 0.0011 29.8 5.7 62 18-86 283-347 (472)
72 3v4v_B Integrin beta-7; cell a 46.9 38 0.0013 29.6 6.1 73 6-85 290-365 (503)
73 2xzm_U Ribosomal protein L7AE 46.8 64 0.0022 22.7 6.4 48 37-85 35-84 (126)
74 1v7r_A Hypothetical protein PH 46.6 14 0.00048 28.1 3.0 29 46-74 2-30 (186)
75 3saj_A Glutamate receptor 1; r 46.2 13 0.00044 29.1 2.8 86 24-114 112-209 (384)
76 1yzh_A TRNA (guanine-N(7)-)-me 46.1 14 0.00049 26.5 2.9 44 28-74 136-179 (214)
77 1ypx_A Putative vitamin-B12 in 46.1 15 0.00051 30.2 3.3 33 20-53 302-334 (375)
78 3fcs_B Integrin beta-3; beta p 46.1 40 0.0014 30.3 6.3 60 18-84 283-345 (690)
79 3ckm_A YRAM (HI1655), LPOA; pe 46.0 12 0.00042 28.6 2.6 88 25-113 106-203 (327)
80 1oj7_A Hypothetical oxidoreduc 45.7 16 0.00053 30.0 3.4 61 30-95 39-114 (408)
81 3tov_A Glycosyl transferase fa 45.1 97 0.0033 24.4 7.9 35 81-120 255-290 (349)
82 1v4v_A UDP-N-acetylglucosamine 44.9 83 0.0028 23.9 7.3 82 26-114 213-296 (376)
83 3sm9_A Mglur3, metabotropic gl 44.8 61 0.0021 26.6 6.9 91 22-113 164-269 (479)
84 3oam_A 3-deoxy-manno-octuloson 44.2 43 0.0015 25.1 5.4 39 30-73 29-67 (252)
85 3tqd_A 3-deoxy-manno-octuloson 44.1 42 0.0014 25.8 5.4 39 30-73 36-74 (256)
86 1mb3_A Cell division response 43.7 33 0.0011 21.3 4.1 26 47-72 4-29 (124)
87 1ta9_A Glycerol dehydrogenase; 43.6 14 0.00048 31.2 2.8 66 29-95 77-153 (450)
88 3w01_A Heptaprenylglyceryl pho 42.9 32 0.0011 27.1 4.6 76 16-95 133-216 (235)
89 3grc_A Sensor protein, kinase; 41.7 44 0.0015 21.4 4.6 25 28-54 16-40 (140)
90 3hsy_A Glutamate receptor 2; l 41.0 36 0.0012 26.4 4.7 84 24-112 105-204 (376)
91 2qwv_A UPF0217 protein VC_A105 40.6 19 0.00066 28.1 3.0 41 44-84 153-194 (208)
92 3i42_A Response regulator rece 40.3 43 0.0015 21.0 4.3 27 46-72 5-31 (127)
93 3cfy_A Putative LUXO repressor 40.1 56 0.0019 21.1 5.0 48 46-93 6-54 (137)
94 3vi3_B Integrin beta-1; beta p 40.0 39 0.0013 29.2 5.0 61 18-85 290-353 (454)
95 2pln_A HP1043, response regula 39.9 48 0.0016 21.2 4.6 50 43-92 17-67 (137)
96 1tmy_A CHEY protein, TMY; chem 39.1 58 0.002 20.1 4.7 23 30-53 14-36 (120)
97 3a1y_G Acidic ribosomal protei 39.1 54 0.0019 25.9 5.5 74 24-100 5-92 (284)
98 3td9_A Branched chain amino ac 39.0 1.2E+02 0.0042 22.8 7.8 94 23-118 128-235 (366)
99 3f6p_A Transcriptional regulat 38.9 47 0.0016 20.9 4.3 24 29-54 13-36 (120)
100 3lte_A Response regulator; str 38.8 40 0.0014 21.3 3.9 26 46-71 8-33 (132)
101 2jnb_A NHP2-like protein 1; sp 37.8 26 0.00089 25.5 3.2 45 42-86 65-111 (144)
102 3rpd_A Methionine synthase (B1 37.5 20 0.00068 29.4 2.8 31 23-54 296-326 (357)
103 1mio_B Nitrogenase molybdenum 37.4 1.1E+02 0.0036 25.5 7.3 11 86-96 384-394 (458)
104 1srr_A SPO0F, sporulation resp 37.3 48 0.0017 20.7 4.2 12 30-41 15-26 (124)
105 3u5i_q A0, L10E, 60S acidic ri 37.2 33 0.0011 27.9 4.1 69 25-100 6-89 (312)
106 3c48_A Predicted glycosyltrans 37.2 1.3E+02 0.0043 23.2 7.3 88 26-113 257-351 (438)
107 3vi6_A 60S ribosomal protein L 36.9 91 0.0031 21.8 5.9 54 32-86 33-88 (125)
108 2vvr_A Ribose-5-phosphate isom 36.7 32 0.0011 25.4 3.5 29 46-74 3-33 (149)
109 2hxw_A Major antigenic peptide 36.7 25 0.00085 25.1 2.9 50 47-97 5-57 (237)
110 3hut_A Putative branched-chain 36.6 1.2E+02 0.0042 22.6 7.0 96 22-119 118-226 (358)
111 3f6c_A Positive transcription 36.5 69 0.0024 20.1 4.9 32 29-61 12-43 (134)
112 2zay_A Response regulator rece 36.4 49 0.0017 21.3 4.2 48 45-92 9-57 (147)
113 3jsy_A Acidic ribosomal protei 36.3 75 0.0026 24.2 5.7 71 27-100 5-88 (213)
114 1b78_A Pyrophosphatase; struct 36.2 18 0.00061 27.6 2.1 29 46-74 10-39 (193)
115 2fca_A TRNA (guanine-N(7)-)-me 36.0 36 0.0012 24.7 3.7 44 28-74 133-176 (213)
116 2a9o_A Response regulator; ess 35.9 51 0.0018 20.2 4.1 24 47-70 4-27 (120)
117 1mvo_A PHOP response regulator 35.8 49 0.0017 20.9 4.1 12 30-41 15-26 (136)
118 2gkg_A Response regulator homo 35.7 40 0.0014 20.8 3.5 27 46-72 7-33 (127)
119 1kq3_A Glycerol dehydrogenase; 35.6 12 0.00041 30.3 1.1 64 30-95 29-102 (376)
120 2qr3_A Two-component system re 35.6 35 0.0012 21.7 3.3 27 46-72 5-31 (140)
121 1lst_A Lysine, arginine, ornit 35.5 33 0.0011 23.9 3.3 42 56-97 122-164 (239)
122 3a10_A Response regulator; pho 35.0 49 0.0017 20.3 3.8 23 30-54 13-35 (116)
123 2d59_A Hypothetical protein PH 34.6 78 0.0027 22.0 5.2 46 22-72 83-128 (144)
124 3j21_k Acidic ribosomal protei 34.6 42 0.0014 27.5 4.3 74 25-101 6-93 (339)
125 2l82_A Designed protein OR32; 34.1 70 0.0024 23.3 4.9 49 24-74 8-58 (162)
126 2gai_A DNA topoisomerase I; zi 34.0 37 0.0013 30.0 4.1 38 24-65 60-101 (633)
127 3hzh_A Chemotaxis response reg 33.8 55 0.0019 21.7 4.2 35 26-61 44-78 (157)
128 3tha_A Tryptophan synthase alp 33.7 88 0.003 24.6 5.9 17 34-51 133-149 (252)
129 1psw_A ADP-heptose LPS heptosy 33.5 1.4E+02 0.0048 22.5 6.9 34 82-120 256-290 (348)
130 2xci_A KDO-transferase, 3-deox 33.4 1.1E+02 0.0039 24.0 6.6 86 26-113 208-304 (374)
131 3kyj_B CHEY6 protein, putative 33.2 75 0.0025 20.5 4.7 29 27-55 22-50 (145)
132 4evq_A Putative ABC transporte 33.1 1.5E+02 0.0053 22.2 8.0 88 23-113 131-232 (375)
133 3gl9_A Response regulator; bet 33.1 49 0.0017 21.0 3.7 24 29-54 13-36 (122)
134 2vsy_A XCC0866; transferase, g 33.1 1.8E+02 0.0062 23.5 7.9 85 27-113 390-478 (568)
135 3r26_A Molybdate-binding perip 33.0 28 0.00097 25.6 2.8 49 47-95 11-63 (237)
136 4ddu_A Reverse gyrase; topoiso 32.9 20 0.00067 33.7 2.2 37 26-65 645-685 (1104)
137 3o9z_A Lipopolysaccaride biosy 32.8 80 0.0027 24.5 5.5 53 21-74 50-102 (312)
138 2f62_A Nucleoside 2-deoxyribos 32.7 70 0.0024 23.3 4.8 40 55-94 27-74 (161)
139 3h5i_A Response regulator/sens 32.7 44 0.0015 21.6 3.5 30 45-74 6-35 (140)
140 3aek_B Light-independent proto 32.6 1.3E+02 0.0046 25.5 7.3 65 30-95 291-357 (525)
141 3hv2_A Response regulator/HD d 32.5 77 0.0026 20.7 4.7 24 28-53 24-47 (153)
142 2duw_A Putative COA-binding pr 32.4 77 0.0026 22.1 4.9 46 22-72 76-121 (145)
143 3k8d_A 3-deoxy-manno-octuloson 32.4 81 0.0028 24.2 5.4 39 30-73 45-83 (264)
144 1zh2_A KDP operon transcriptio 32.2 64 0.0022 19.8 4.1 25 47-71 4-28 (121)
145 3smz_A Protein raver-1, ribonu 32.0 1.4E+02 0.0048 22.0 6.6 46 25-70 3-49 (284)
146 1gku_B Reverse gyrase, TOP-RG; 31.9 42 0.0014 31.1 4.2 36 26-64 608-647 (1054)
147 2rdm_A Response regulator rece 31.7 50 0.0017 20.7 3.5 13 29-41 16-28 (132)
148 3cfz_A UPF0100 protein MJ1186; 31.6 25 0.00087 26.6 2.3 50 46-95 8-63 (292)
149 1qgu_B Protein (nitrogenase mo 31.6 1.6E+02 0.0056 25.0 7.6 11 86-96 433-443 (519)
150 2q5c_A NTRC family transcripti 31.5 1.4E+02 0.0047 21.9 6.4 69 25-96 78-151 (196)
151 3t6k_A Response regulator rece 31.4 77 0.0026 20.4 4.5 25 29-55 15-39 (136)
152 2xdq_A Light-independent proto 31.2 13 0.00044 30.9 0.6 60 53-113 206-266 (460)
153 3hdv_A Response regulator; PSI 30.9 38 0.0013 21.6 2.8 24 47-70 10-33 (136)
154 3ly0_A Dipeptidase AC. metallo 30.6 51 0.0018 27.4 4.2 30 23-53 278-307 (364)
155 3u43_A Colicin-E2 immunity pro 30.6 36 0.0012 23.4 2.7 16 26-41 63-78 (94)
156 2pl1_A Transcriptional regulat 30.3 61 0.0021 19.9 3.7 25 29-55 11-35 (121)
157 2waw_A MOBA relate protein; un 30.3 93 0.0032 21.4 5.1 42 29-73 32-73 (199)
158 2khz_A C-MYC-responsive protei 30.2 81 0.0028 22.6 4.8 52 43-95 10-85 (165)
159 3zdk_A 5' exonuclease apollo; 30.1 1.2E+02 0.0043 24.2 6.4 53 21-74 153-205 (336)
160 1i7d_A DNA topoisomerase III; 30.0 49 0.0017 29.5 4.2 38 25-65 79-120 (659)
161 2qxy_A Response regulator; reg 30.0 47 0.0016 21.3 3.2 28 46-73 6-33 (142)
162 4em8_A Ribose 5-phosphate isom 29.9 46 0.0016 24.6 3.4 30 45-74 8-39 (148)
163 3nav_A Tryptophan synthase alp 29.9 2E+02 0.0069 22.5 7.6 77 43-120 125-218 (271)
164 2qzj_A Two-component response 29.7 62 0.0021 20.9 3.8 24 47-70 7-30 (136)
165 3frm_A Uncharacterized conserv 29.7 1.4E+02 0.0048 22.0 6.2 49 23-72 46-98 (254)
166 1o1x_A Ribose-5-phosphate isom 29.5 49 0.0017 24.6 3.5 31 44-74 12-44 (155)
167 3iwt_A 178AA long hypothetical 29.4 56 0.0019 23.4 3.8 43 59-101 44-95 (178)
168 3ipc_A ABC transporter, substr 29.4 1.1E+02 0.0038 22.9 5.7 95 22-118 116-224 (356)
169 2nyt_A Probable C->U-editing e 29.3 84 0.0029 23.7 4.9 44 31-74 98-145 (190)
170 3crn_A Response regulator rece 29.2 66 0.0023 20.5 3.8 24 29-54 14-37 (132)
171 1dec_A Decorsin; blood coagula 28.6 23 0.0008 20.5 1.3 21 5-25 4-24 (39)
172 1unk_A Colicin E7; immunity pr 28.5 42 0.0014 22.8 2.7 16 26-41 64-79 (87)
173 1itu_A Renal dipeptidase; glyc 28.4 66 0.0023 26.7 4.5 29 24-53 261-289 (369)
174 3cg4_A Response regulator rece 28.3 46 0.0016 21.3 2.9 26 46-71 9-34 (142)
175 2f5t_X Archaeal transcriptiona 28.2 1E+02 0.0036 23.7 5.4 47 25-74 6-55 (233)
176 4fyk_A Deoxyribonucleoside 5'- 28.2 90 0.0031 22.8 4.8 50 46-96 4-77 (152)
177 1vp2_A Putative xanthosine tri 28.0 31 0.001 26.7 2.2 31 43-74 14-44 (208)
178 1ccw_A Protein (glutamate muta 27.9 1.1E+02 0.0039 21.0 5.1 54 45-98 4-65 (137)
179 2gek_A Phosphatidylinositol ma 27.8 1.7E+02 0.006 21.9 6.6 84 26-113 223-309 (406)
180 1yg0_A COP associated protein; 27.6 50 0.0017 18.0 2.7 40 31-70 16-64 (66)
181 3gt7_A Sensor protein; structu 27.6 64 0.0022 21.3 3.6 24 28-53 17-40 (154)
182 2hl0_A Threonyl-tRNA synthetas 27.5 1.7E+02 0.0057 21.5 6.1 46 27-73 57-114 (143)
183 3jyw_G 60S ribosomal protein L 27.3 45 0.0015 23.3 2.8 52 32-84 31-84 (113)
184 1zgz_A Torcad operon transcrip 27.3 75 0.0026 19.6 3.8 12 30-41 14-25 (122)
185 1xhf_A DYE resistance, aerobic 27.3 78 0.0027 19.6 3.8 23 30-54 15-37 (123)
186 3gzg_A Molybdate-binding perip 27.3 30 0.001 26.3 2.1 50 46-95 26-79 (253)
187 3eod_A Protein HNR; response r 27.3 52 0.0018 20.7 3.0 26 46-71 9-34 (130)
188 4fcu_A 3-deoxy-manno-octuloson 27.1 73 0.0025 24.3 4.3 11 43-53 41-51 (253)
189 1zav_A 50S ribosomal protein L 27.1 81 0.0028 23.1 4.4 73 25-100 6-88 (180)
190 2oq9_A Minicollagen-5; disulfi 26.9 24 0.0008 18.8 1.0 10 2-11 15-24 (26)
191 2jwk_A Protein TOLR; periplasm 26.7 1.1E+02 0.0036 18.3 4.8 42 26-68 28-72 (74)
192 2xdq_B Light-independent proto 26.7 2.8E+02 0.0097 23.2 8.7 10 86-95 371-380 (511)
193 1c4o_A DNA nucleotide excision 26.3 1.3E+02 0.0043 26.3 6.1 66 27-95 425-497 (664)
194 3lno_A Putative uncharacterize 26.1 1.5E+02 0.0051 19.7 5.5 35 17-52 51-86 (108)
195 2yxb_A Coenzyme B12-dependent 25.9 78 0.0027 22.6 4.0 50 43-92 17-74 (161)
196 4dad_A Putative pilus assembly 25.9 50 0.0017 21.4 2.8 28 26-54 28-55 (146)
197 3beo_A UDP-N-acetylglucosamine 25.7 2.1E+02 0.0071 21.4 7.0 81 27-114 222-304 (375)
198 3cg0_A Response regulator rece 25.7 84 0.0029 19.8 3.8 27 46-72 11-37 (140)
199 3qhp_A Type 1 capsular polysac 25.6 1.1E+02 0.0038 20.1 4.6 84 26-113 16-101 (166)
200 2d7d_A Uvrabc system protein B 25.5 1.4E+02 0.0049 26.0 6.3 67 27-96 431-504 (661)
201 3he8_A Ribose-5-phosphate isom 25.5 56 0.0019 24.0 3.2 29 46-74 2-32 (149)
202 2rag_A Dipeptidase; aminohydro 25.5 79 0.0027 26.6 4.5 29 24-53 333-361 (417)
203 2p2w_A Citrate synthase; trans 25.2 21 0.00073 29.6 0.9 26 77-104 163-188 (367)
204 3tqg_A 2-methylcitrate synthas 25.1 22 0.00074 29.8 0.9 26 77-104 173-198 (375)
205 3jte_A Response regulator rece 24.9 81 0.0028 20.1 3.7 31 28-60 13-43 (143)
206 3qbe_A 3-dehydroquinate syntha 24.9 92 0.0032 25.6 4.8 62 31-95 33-111 (368)
207 3en0_A Cyanophycinase; serine 24.9 79 0.0027 25.2 4.3 45 29-74 43-91 (291)
208 3kts_A Glycerol uptake operon 24.9 1.1E+02 0.0038 23.2 4.9 65 32-98 20-93 (192)
209 3cnb_A DNA-binding response re 24.8 1.1E+02 0.0036 19.3 4.2 27 28-55 18-45 (143)
210 3sgf_H 50S ribosomal protein L 24.8 9 0.00031 28.2 -1.3 73 25-100 6-85 (165)
211 1va0_A Uroporphyrin-III C-meth 24.8 2.1E+02 0.0072 21.1 7.4 48 26-75 60-110 (239)
212 1nui_A DNA primase/helicase; z 24.7 78 0.0027 23.9 4.0 45 31-75 186-234 (255)
213 3c3m_A Response regulator rece 24.5 86 0.0029 20.1 3.7 30 27-58 12-41 (138)
214 2wee_A MOBA-related protein; u 24.4 1.7E+02 0.006 20.0 5.8 41 30-73 33-73 (197)
215 3ixl_A Amdase, arylmalonate de 24.4 1.2E+02 0.0041 23.0 5.0 48 24-73 99-147 (240)
216 3mxm_B Three prime repair exon 24.3 88 0.003 23.6 4.3 44 25-69 98-143 (242)
217 3cij_A UPF0100 protein AF_0094 24.2 42 0.0014 25.3 2.4 49 47-95 9-63 (295)
218 2iue_A Pactolus I-domain; memb 24.2 97 0.0033 23.7 4.5 57 21-84 147-206 (212)
219 1dz3_A Stage 0 sporulation pro 24.2 1.4E+02 0.0047 18.7 4.7 29 30-58 14-42 (130)
220 3kg2_A Glutamate receptor 2; I 24.2 1.2E+02 0.0039 26.1 5.4 71 24-98 105-190 (823)
221 3oa2_A WBPB; oxidoreductase, s 24.2 85 0.0029 24.4 4.3 52 21-74 50-103 (318)
222 3mfq_A TROA, high-affinity zin 24.0 92 0.0032 24.2 4.4 49 24-74 195-244 (282)
223 3rfq_A Pterin-4-alpha-carbinol 24.0 75 0.0026 23.7 3.7 46 57-102 51-104 (185)
224 1usg_A Leucine-specific bindin 23.9 2.1E+02 0.0073 21.0 6.3 94 23-118 117-224 (346)
225 1iuk_A Hypothetical protein TT 23.8 66 0.0023 22.3 3.2 9 22-30 59-67 (140)
226 2rb4_A ATP-dependent RNA helic 23.7 1.8E+02 0.0062 19.9 6.5 71 24-95 15-92 (175)
227 3m6m_D Sensory/regulatory prot 23.4 83 0.0028 20.5 3.5 27 46-72 16-42 (143)
228 1y81_A Conserved hypothetical 23.2 1.6E+02 0.0054 20.3 5.2 45 22-71 75-119 (138)
229 1uwd_A Hypothetical protein TM 23.1 1.6E+02 0.0055 19.2 5.7 34 17-51 49-82 (103)
230 1h7e_A 3-deoxy-manno-octuloson 23.0 1.4E+02 0.0049 21.4 5.1 39 30-73 29-68 (245)
231 3f9k_A Integrase; protein-prot 23.0 1.6E+02 0.0054 20.9 5.2 46 25-73 93-140 (210)
232 1ujp_A Tryptophan synthase alp 22.9 1.7E+02 0.0057 22.8 5.7 58 55-113 131-204 (271)
233 2xvy_A Chelatase, putative; me 22.9 1.9E+02 0.0065 21.7 5.9 46 24-74 186-243 (269)
234 2rjn_A Response regulator rece 22.8 70 0.0024 20.9 3.1 25 27-53 16-40 (154)
235 3rf7_A Iron-containing alcohol 22.7 57 0.002 26.8 3.1 67 29-96 36-118 (375)
236 3gi1_A LBP, laminin-binding pr 22.7 1.8E+02 0.006 22.6 5.8 46 24-74 211-257 (286)
237 1vgp_A 373AA long hypothetical 22.6 25 0.00084 29.3 0.8 26 77-104 167-192 (373)
238 3n0r_A Response regulator; sig 22.6 2.6E+02 0.0088 21.3 7.4 66 27-92 141-210 (286)
239 1fy2_A Aspartyl dipeptidase; s 22.5 1.4E+02 0.0047 22.4 5.0 64 31-99 21-91 (229)
240 3cq1_A Putative uncharacterize 22.4 1E+02 0.0035 20.3 3.8 39 17-56 48-87 (103)
241 2ifc_A Citrate synthase; oxalo 22.4 26 0.00089 29.3 0.9 26 77-104 175-200 (385)
242 3tml_A 2-dehydro-3-deoxyphosph 22.0 1.7E+02 0.0058 23.5 5.7 73 21-95 23-116 (288)
243 1k68_A Phytochrome response re 22.0 1.1E+02 0.0037 19.0 3.8 22 47-68 5-26 (140)
244 3ph3_A Ribose-5-phosphate isom 21.8 72 0.0025 24.0 3.2 29 46-74 22-52 (169)
245 3cfx_A UPF0100 protein MA_0280 21.7 45 0.0015 25.2 2.1 41 55-95 17-63 (296)
246 2ab1_A Hypothetical protein; H 21.7 1.5E+02 0.0053 20.5 4.8 40 33-74 53-95 (122)
247 2h12_A Citrate synthase; acido 21.7 27 0.00094 29.7 0.9 26 77-104 224-249 (436)
248 1fr2_A Colicin E9 immunity pro 21.6 72 0.0025 21.4 2.9 17 25-41 62-78 (86)
249 3cz5_A Two-component response 21.5 1.4E+02 0.0048 19.3 4.4 27 46-72 7-34 (153)
250 1dc7_A NTRC, nitrogen regulati 21.5 52 0.0018 20.2 2.1 29 46-74 5-33 (124)
251 3ia1_A THIO-disulfide isomeras 21.5 1.7E+02 0.0059 18.9 6.3 53 20-74 39-91 (154)
252 2lqo_A Putative glutaredoxin R 21.4 1.7E+02 0.0059 18.9 5.0 22 32-54 18-39 (92)
253 3tsa_A SPNG, NDP-rhamnosyltran 21.3 1.4E+02 0.0047 22.8 4.9 27 84-114 283-309 (391)
254 1w0h_A 3'-5' exonuclease ERI1; 21.2 1.2E+02 0.0041 21.6 4.3 45 24-68 82-129 (204)
255 4gnr_A ABC transporter substra 21.2 2.6E+02 0.0089 20.8 9.3 97 22-119 121-228 (353)
256 1a59_A Citrate synthase; cold- 21.1 28 0.00096 28.9 0.9 26 77-104 173-198 (378)
257 2lta_A De novo designed protei 26.6 20 0.00069 24.8 0.0 51 32-84 17-69 (110)
258 1o7x_A Citrate synthase; lyase 21.1 28 0.00096 29.0 0.9 26 77-104 170-195 (377)
259 1iom_A Citrate synthase; open 21.1 28 0.00097 29.0 0.9 26 77-104 171-196 (377)
260 5nul_A Flavodoxin; electron tr 21.1 1.3E+02 0.0045 19.8 4.2 52 18-72 55-111 (138)
261 2is8_A Molybdopterin biosynthe 21.0 1E+02 0.0035 21.9 3.8 41 60-100 26-75 (164)
262 3sz8_A 2-dehydro-3-deoxyphosph 21.0 2.1E+02 0.0072 22.9 6.0 69 21-91 26-114 (285)
263 3n0x_A Possible substrate bind 20.8 1.8E+02 0.0061 22.2 5.5 68 24-93 123-207 (374)
264 1q57_A DNA primase/helicase; d 20.8 1.5E+02 0.0052 24.4 5.3 77 43-120 135-233 (503)
265 3kto_A Response regulator rece 20.7 88 0.003 20.0 3.2 29 45-73 7-35 (136)
266 1aj8_A Citrate synthase; hyper 20.7 29 0.001 28.8 0.9 26 77-104 170-195 (371)
267 3lua_A Response regulator rece 20.5 64 0.0022 20.6 2.4 27 46-72 6-33 (140)
268 3dmb_A Putative general stress 20.5 1.3E+02 0.0046 20.6 4.3 25 24-51 2-26 (147)
269 1byr_A Protein (endonuclease); 20.4 1.1E+02 0.0037 20.5 3.7 43 29-74 14-59 (155)
270 2oqr_A Sensory transduction pr 20.4 1.5E+02 0.0053 20.6 4.7 31 28-60 14-44 (230)
271 3vdp_A Recombination protein R 20.3 2.2E+02 0.0074 22.2 5.8 55 33-88 140-205 (212)
272 2lci_A Protein OR36; structura 20.3 2.3E+02 0.008 19.9 5.8 48 26-74 59-107 (134)
273 3k7p_A Ribose 5-phosphate isom 20.2 1.1E+02 0.0039 23.2 4.0 29 46-74 24-56 (179)
274 3s5p_A Ribose 5-phosphate isom 20.2 82 0.0028 23.7 3.2 32 43-74 20-53 (166)
275 3c97_A Signal transduction his 20.1 1.8E+02 0.006 18.5 4.7 25 46-70 12-36 (140)
276 1cxq_A Avian sarcoma virus int 20.1 1.9E+02 0.0066 19.3 5.0 48 25-74 49-98 (162)
No 1
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=100.00 E-value=4.8e-50 Score=339.10 Aligned_cols=117 Identities=35% Similarity=0.612 Sum_probs=114.2
Q ss_pred ccCCcccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHH
Q psy9357 3 TNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVD 81 (132)
Q Consensus 3 ~~spqC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vD 81 (132)
|+||||+||+++++++|++||+||+++|+++|+++++++ ++++||||||+++|++||+++|++++++||++ |++|+||
T Consensus 240 faSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~-~lksVFIATDa~~~~~ELk~~L~~~~v~vv~~~pe~a~ID 318 (362)
T 3zy2_A 240 FASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSI-GAKSVFVASDKDHMIDEINEALKPYEIEAHRQEPDDMYTS 318 (362)
T ss_dssp TTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHH-TCSEEEEEESSCCCHHHHHHHHGGGTCCEECCSSCCHHHH
T ss_pred ccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHHhhccCceEEEeCCchhHHH
Confidence 799999999999999999999999999999999999999 99999999999999999999999889999999 8999999
Q ss_pred HHHHhhcCeeeecceeecchhhhhhhhcCC---CCCCcccCC
Q psy9357 82 LAILSQANHFIGNCISSFTAFVKRHRDVKG---LPSSFWAFP 120 (132)
Q Consensus 82 l~Il~~A~~FIGNcvSSFTa~V~reR~~~G---~ps~F~g~~ 120 (132)
|+||+|||||||||+||||+||+|||+++| +||+||||+
T Consensus 319 ~~I~~~A~~FIGN~~SSFSa~I~rERdi~G~~~~ps~Ffg~~ 360 (362)
T 3zy2_A 319 LAIMGRADLFVGNCVSTFSHIVKRERDHAGQSPRPSAFFGIR 360 (362)
T ss_dssp HHHHHHSSEEEECTTCHHHHHHHHHHHHSSSSCCCEEETTC-
T ss_pred HHHHHhCCEeecCccccccHHHHHHHHhcCCCCCCccccCCC
Confidence 999999999999999999999999999999 999999997
No 2
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.95 E-value=2.9e-29 Score=210.49 Aligned_cols=113 Identities=25% Similarity=0.356 Sum_probs=99.4
Q ss_pred cCCcccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC-C------
Q psy9357 4 NAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS-D------ 75 (132)
Q Consensus 4 ~spqC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l-~------ 75 (132)
.+.+|++.++.....+.++|+||+++|+++|+++++++ +++.||||||+.+ ++++|+++|... +.+ +
T Consensus 265 ~~y~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~~-~~~~VyiATD~~~~~~~~l~~~~~~~----~~~~~~~~~~~ 339 (408)
T 4ap5_A 265 GPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTH-RLDKVFVATDAVRKEYEELKKLLPEM----VRFEPTWEELE 339 (408)
T ss_dssp EEEEEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHHH-TCSCEEEEECCCHHHHHHHHHHCTTE----ECCCCCHHHHH
T ss_pred CCccccccccccchhhhhccCCCHHHHHHHHHHHHHhc-CCCEEEEeCCCchhHHHHHHHhCCCc----EEecCcchhhh
Confidence 34578888888888999999999999999999999999 9999999999765 689999999642 221 1
Q ss_pred ---C--chHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC--CCcccCCC
Q psy9357 76 ---Q--SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP--SSFWAFPI 121 (132)
Q Consensus 76 ---~--~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p--s~F~g~~~ 121 (132)
+ .++|||+||+||++|||||+||||++|+|||+++||| ||||+|..
T Consensus 340 ~~~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t~~~~c~ 392 (408)
T 4ap5_A 340 LYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCG 392 (408)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGTSCBCCC
T ss_pred ccCcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCccccccCC
Confidence 1 5889999999999999999999999999999999999 89999963
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=98.77 E-value=2.2e-09 Score=86.77 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=62.9
Q ss_pred ccccCCCHHHHHHHHHHHHHHhC-CCcEEEEecCCcccHHHHHHhhccCC---cEEEe------------C--CCchHHH
Q psy9357 20 EELCFPSVETVVRQLKRVVREHG-QIKYIFVATDNNNLNEPLKEAFKRTE---IRIVP------------S--DQSPHVD 81 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~-~lk~VfIaTD~~~~~~eLk~~l~~~~---~~vv~------------l--~~~~~vD 81 (132)
.++|.| ++.+.+.|++...+.+ +.++|||+||...++++|++.+...- ..++. . ...+.+|
T Consensus 192 ~~~~~~-l~~~~~~i~~~~~~~~~~~~~vfvaSDd~~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~D 270 (330)
T 2hhc_A 192 ADSELA-LHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALID 270 (330)
T ss_dssp HHHHHH-HHHHHHHHHHHHTSCCSSCEEEEEEESCHHHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHH
T ss_pred HHHhHH-HHHHHHHHHHHHhccCcCceEEEEEeCCHHHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHH
Confidence 345666 8888888888777652 35899999999999999999886410 01100 0 1158899
Q ss_pred HHHHhhcCeee--ecceeecchhhhh
Q psy9357 82 LAILSQANHFI--GNCISSFTAFVKR 105 (132)
Q Consensus 82 l~Il~~A~~FI--GNcvSSFTa~V~r 105 (132)
|++|+++||+| |+ .||||...+.
T Consensus 271 m~LLS~cd~~I~~~~-~STFs~~aa~ 295 (330)
T 2hhc_A 271 MYLLARCATVIRFPP-TSAFTRYARL 295 (330)
T ss_dssp HHHHTTCSEEEEEST-TCGGGHHHHH
T ss_pred HHHHHcCCeeEECCC-CCCHHHHHHH
Confidence 99999999999 77 9999999874
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.95 E-value=4.4e-05 Score=66.93 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=70.0
Q ss_pred cccCCCHHHHHHHHHHHHHHh-----CCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-------------C----Cch
Q psy9357 21 ELCFPSVETVVRQLKRVVREH-----GQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-------------D----QSP 78 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~-----~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-------------~----~~~ 78 (132)
++-+-++++..+.+..++..+ +....||||||.+..++++++.++ +++++.- . ..+
T Consensus 311 E~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~~ifLATDDp~v~~e~k~~~p--~~~~~~d~~~~~~a~~~~R~s~~~l~~~ 388 (526)
T 2de0_X 311 EAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDPSLLKEAKTKYP--NYEFISDNSISWSAGLHNRYTENSLRGV 388 (526)
T ss_dssp CCCSCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEEESCHHHHHHHHHHCT--TSEEECCCCSSCSSGGGGGTCCTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEcCCHHHHHHHHHhCC--CCEEecCcccccccCccccccHHHHHHH
Confidence 455566788888888777633 367999999999999999987665 3444421 1 158
Q ss_pred HHHHHHHhhcCeeeecceeecchhhhhhhhcCC
Q psy9357 79 HVDLAILSQANHFIGNCISSFTAFVKRHRDVKG 111 (132)
Q Consensus 79 ~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G 111 (132)
.+||++|+++|+|||+--|+|+..+...|...+
T Consensus 389 l~DL~lLs~cd~~Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 389 ILDIHFLSQADFLVCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp HHHHHHHHHSSEEEECTTSHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCeeecCCCCHHHHHHHHHhcCcC
Confidence 999999999999999999999999998887665
No 5
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=87.79 E-value=1.5 Score=34.83 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=64.9
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC----CC-chHHHHHHHhhcCeee
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS----DQ-SPHVDLAILSQANHFI 92 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l----~~-~~~vDl~Il~~A~~FI 92 (132)
+-.|+.....+.+-++++.. +.++|+|..+.+. ..+.++++|++.|++|+.. ++ .+++..+--..||++|
T Consensus 133 r~~~~~~~~~~~~~~~~~~~-g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~d~~~~l~~i~~~~~~vii 211 (433)
T 4f11_A 133 RTVPSDNAVNPAILKLLKHY-QWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIIL 211 (433)
T ss_dssp ESSCCGGGHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEESSCCHHHHHHHHHTTCCEEE
T ss_pred EecCchHHHHHHHHHHHHHc-CCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccCcCHHHHHHHHhhCCCeEEE
Confidence 34577777778888888887 9999999884443 4677888888888887752 34 7888888889999999
Q ss_pred ecceeecchhhhhhhhcCCCC
Q psy9357 93 GNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 93 GNcvSSFTa~V~reR~~~G~p 113 (132)
..|...-...+-++=...|+.
T Consensus 212 ~~~~~~~~~~~~~~a~~~g~~ 232 (433)
T 4f11_A 212 GQFDQNMAAKVFCCAYEENMY 232 (433)
T ss_dssp EECCHHHHHHHHHHHHHTTCC
T ss_pred EeCcHHHHHHHHHHHHHcCCC
Confidence 877665544444433334543
No 6
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=87.19 E-value=3.1 Score=32.57 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=65.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEe--CC----C-chHHHHHHHhhcC
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVP--SD----Q-SPHVDLAILSQAN 89 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~--l~----~-~~~vDl~Il~~A~ 89 (132)
.-+..|+.....+.+-++++.. +.++|.|..|.+. .++.+++.+++.|++|+. ++ + .+++..+--..+|
T Consensus 115 ~~r~~~~~~~~~~~~~~~~~~~-g~~~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~~~~~~ 193 (395)
T 3h6g_A 115 YVSLYPDFSSLSRAILDLVQFF-KWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEF 193 (395)
T ss_dssp EEEEEECHHHHHHHHHHHHHHT-TCSEEEEEESSTHHHHHTHHHHTGGGTSSCEEEEEECCSSGGGGHHHHHHHHHTTCC
T ss_pred EEEecCCHHHHHHHHHHHHHHC-CCeEEEEEEEChhHHHHHHHHHHhhhcCCceEEEEEeCCCchhHHHHHHHHhhcCCe
Confidence 3455688887788888888888 9999999987553 467788888877877654 32 2 5677777778899
Q ss_pred eeeecceeecchhhhhhhhcCCCCC
Q psy9357 90 HFIGNCISSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 90 ~FIGNcvSSFTa~V~reR~~~G~ps 114 (132)
++|--|...-...+-++=...|+..
T Consensus 194 vi~~~~~~~~~~~~~~qa~~~gl~~ 218 (395)
T 3h6g_A 194 HVIFDCSHEMAAGILKQALAMGMMT 218 (395)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEECCHHHHHHHHHHHHHccccC
Confidence 8877666554444444333456543
No 7
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=83.13 E-value=2.1 Score=34.92 Aligned_cols=65 Identities=8% Similarity=-0.001 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCc---c---cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNN---N---LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG 93 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~---~---~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG 93 (132)
.++++.+.++++ +.++++|-||.. . +.+++.+.|+..+++++.+ |. ...++++.-.++|..||
T Consensus 20 ~~~~l~~~l~~~-g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 98 (387)
T 3bfj_A 20 AISVVGERCQLL-GGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVT 98 (387)
T ss_dssp GGGGHHHHHHHT-TCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHc-CCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345566666777 789999999864 2 7899999998878776543 22 45566666778899986
Q ss_pred cc
Q psy9357 94 NC 95 (132)
Q Consensus 94 Nc 95 (132)
=|
T Consensus 99 vG 100 (387)
T 3bfj_A 99 VG 100 (387)
T ss_dssp EE
T ss_pred eC
Confidence 54
No 8
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=82.02 E-value=5.4 Score=31.23 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=62.5
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc---CCcEEE--eC---CC-chHHHHHHHhhcCeee
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR---TEIRIV--PS---DQ-SPHVDLAILSQANHFI 92 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~---~~~~vv--~l---~~-~~~vDl~Il~~A~~FI 92 (132)
+..|+.....+.+-++++.. +.++|.|..+.+.+...|+++++. .++.|+ .. .| .+++..+--..+|++|
T Consensus 118 r~~p~~~~~~~~~~~~~~~~-g~~~vaii~~~~~~g~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~~vii 196 (393)
T 3om0_A 118 SLYPSNEDVSLAVSRILKSF-NYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTPLLKEIRDDKVSTII 196 (393)
T ss_dssp ESSCCHHHHHHHHHHHHHHT-TSCCEEEEESSTTHHHHTHHHHHHHHHSSSCEEEEECC-CCCSHHHHHHHHHHTCSEEE
T ss_pred EecCCHHHHHHHHHHHHHhC-CCcEEEEEEeCchHHHHHHHHHHhhhccCCeEEEEecCCCCCHHHHHHHHHhcCCeEEE
Confidence 45688887788888888887 999999999777776667666653 455443 23 23 6788888888999888
Q ss_pred ecceeecchhhhhhhhcCCCC
Q psy9357 93 GNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 93 GNcvSSFTa~V~reR~~~G~p 113 (132)
--|...-...+.++=...|+.
T Consensus 197 ~~~~~~~~~~~~~~a~~~g~~ 217 (393)
T 3om0_A 197 IDANASISHLVLRKASELGMT 217 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTTT
T ss_pred EECCHHHHHHHHHHHHHcCcc
Confidence 766655555444443345654
No 9
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=79.75 E-value=4.2 Score=27.50 Aligned_cols=55 Identities=7% Similarity=0.160 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchHHHHHHHhh
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQ 87 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~ 87 (132)
+++.+.+++- +++-|+||+|.++ ...+|..+-...++.++...+...+-.++...
T Consensus 25 ~~v~kai~~g-ka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~ 80 (101)
T 3v7q_A 25 DLVIKEIRNA-RAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLGRSIGKE 80 (101)
T ss_dssp HHHHHHHHTT-CCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTSS
T ss_pred hhhHHHHhcC-ceeEEEEeccccccchhhhcccccccCCCeeeechHHHHHhhhCcc
Confidence 3455566665 8999999999876 46666555555678777766666666665543
No 10
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=79.22 E-value=9 Score=30.45 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=58.6
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCc---c---cHHHHHHhhccCCcEEEeC---C----C-chHHHHHHHh
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNN---N---LNEPLKEAFKRTEIRIVPS---D----Q-SPHVDLAILS 86 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~---~---~~~eLk~~l~~~~~~vv~l---~----~-~~~vDl~Il~ 86 (132)
+-.|+.....+.+.++++.. +-+.|.|.. |.+ . .++.|++.|++.|+.|+.. + + .+++..+- .
T Consensus 133 r~~p~~~~~~~a~~~~~~~~-~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~-~ 210 (441)
T 1jdp_A 133 RVAPAYAKMGEMMLALFRHH-HWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQ-A 210 (441)
T ss_dssp ECSCCHHHHHHHHHHHHHHH-TCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHH-H
T ss_pred EecCcHHHHHHHHHHHHHhc-CCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcccCHHHHHHHhh-c
Confidence 45678887888888888888 889998876 433 2 5577888888778776542 3 2 45666666 8
Q ss_pred hcCeeeecceeecc-hhhhhhhhcCCC
Q psy9357 87 QANHFIGNCISSFT-AFVKRHRDVKGL 112 (132)
Q Consensus 87 ~A~~FIGNcvSSFT-a~V~reR~~~G~ 112 (132)
.||++|-.+...-. .+++.-|+ .|+
T Consensus 211 ~~~vii~~~~~~~~~~~~~~~~~-~gl 236 (441)
T 1jdp_A 211 SERVVIMCASSDTIRSIMLVAHR-HGM 236 (441)
T ss_dssp HCSEEEEESCHHHHHHHHHHHHH-TTC
T ss_pred CCcEEEEecCHHHHHHHHHHHHH-cCC
Confidence 99999876654333 34444444 454
No 11
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=78.61 E-value=1.5 Score=36.08 Aligned_cols=70 Identities=10% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCc----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNN----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG 93 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG 93 (132)
+..++++.+.++++ +.++++|-||.. .+.+++.+.|+..+++++.+ |. ...++++.-.++|..||
T Consensus 16 ~g~~~~l~~~~~~~-g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 94 (383)
T 3ox4_A 16 EGSLEKAIKDLNGS-GFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVIS 94 (383)
T ss_dssp TTHHHHHHHTTTTS-CCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 45677888888887 889999999864 26788999999877766443 33 45666777778999887
Q ss_pred cceee
Q psy9357 94 NCISS 98 (132)
Q Consensus 94 NcvSS 98 (132)
=|-=|
T Consensus 95 vGGGs 99 (383)
T 3ox4_A 95 LGGGS 99 (383)
T ss_dssp EESHH
T ss_pred eCCcH
Confidence 55433
No 12
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=77.40 E-value=4.2 Score=27.39 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchHHHHHHHh
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDLAILS 86 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~ 86 (132)
+++.+.+++- +++-|+||+|.++ ....|..+-...++.++...+...+-.++..
T Consensus 24 ~~v~kai~~g-ka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk 78 (101)
T 3on1_A 24 EQVVKAVQNG-QVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLGRAIGK 78 (101)
T ss_dssp HHHHHHHHTT-CCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTTS
T ss_pred HHHHHHHHcC-CCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC
Confidence 3455555664 8999999999886 3555555545557777765666666666554
No 13
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=76.60 E-value=2.6 Score=34.39 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeC----CC----chHHHHHHHhhcCeeeecceee
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPS----DQ----SPHVDLAILSQANHFIGNCISS 98 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l----~~----~~~vDl~Il~~A~~FIGNcvSS 98 (132)
..++++.+.++++ +.++++|-||... ..+++.+.|+..++.+..- |. ...++++.-.++|..||=|-=|
T Consensus 20 g~~~~l~~~l~~~-g~~r~liVtd~~~~~~~~~v~~~L~~~~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 98 (353)
T 3hl0_A 20 GSSADVAEEIRRL-GLSRALVLSTPQQKGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGS 98 (353)
T ss_dssp TGGGGHHHHHHHT-TCCCEEEECCGGGHHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred CHHHHHHHHHHHh-CCCEEEEEecCchhhHHHHHHHHHhhCCcEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcH
Confidence 3456677777887 8899999999764 5788899998755555432 22 3445566667889888755433
No 14
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=76.42 E-value=2.2 Score=34.69 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeecc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGNc 95 (132)
.++++.+.++++ +.++++|-||..- +.+++.+.|+..+++++.+ |. ...++++.-..+|..||=|
T Consensus 18 ~~~~l~~~l~~~-g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 96 (386)
T 1rrm_A 18 AVGALTDEVKRR-GYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIG 96 (386)
T ss_dssp GGGGHHHHHHHH-TCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHHc-CCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 345566666667 7899999998642 6899999998777766543 22 4556666677889998654
No 15
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=74.38 E-value=3.4 Score=33.85 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeC--C--C----chHHHHHHHhhcCeeeecceeec
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPS--D--Q----SPHVDLAILSQANHFIGNCISSF 99 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l--~--~----~~~vDl~Il~~A~~FIGNcvSSF 99 (132)
.++++.+.++++ +.++++|-||... ..+++.+.|+..++.+..- + . ...++++.-.++|..||=|-=|-
T Consensus 23 ~~~~l~~~l~~~-g~~r~liVtd~~~~~~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 101 (358)
T 3jzd_A 23 SSSQVAAEVERL-GAKRALVLCTPNQQAEAERIADLLGPLSAGVYAGAVMHVPIESARDATARAREAGADCAVAVGGGST 101 (358)
T ss_dssp GGGGHHHHHHHT-TCSCEEEECCGGGHHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHHHHh-CCCeEEEEeCCcHHHHHHHHHHHhccCCEEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHH
Confidence 456677778887 8899999999764 4788888898655544432 2 2 34556666678999987654443
No 16
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=73.92 E-value=2.1 Score=34.90 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeee
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIG 93 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIG 93 (132)
..++++.+.++++ + ++++|-||... +.+++.+.|+..+++++.+ |. ...++++.-.++|..||
T Consensus 27 g~~~~l~~~l~~~-g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIa 104 (371)
T 1o2d_A 27 KILEKRGNIIDLL-G-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVG 104 (371)
T ss_dssp THHHHHGGGGGGT-C-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEE
T ss_pred CHHHHHHHHHHHc-C-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3556677777777 6 89999998633 5799999998777765443 33 34455555567899986
Q ss_pred cce
Q psy9357 94 NCI 96 (132)
Q Consensus 94 Ncv 96 (132)
=|-
T Consensus 105 vGG 107 (371)
T 1o2d_A 105 LGG 107 (371)
T ss_dssp EES
T ss_pred eCC
Confidence 543
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=73.02 E-value=20 Score=27.82 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=58.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhcCe
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQANH 90 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A~~ 90 (132)
..|+...-...+-++++.. +.++|+|..+... ..+.++++|++.|.+||.. .| .+++..+--..+|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~-g~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~pd~ 197 (371)
T 4f06_A 119 TSFTMFQNTVPAAKVAKQK-GATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLSTTDFGPIMQRIKNSGADM 197 (371)
T ss_dssp SSCCHHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHTCSE
T ss_pred cccchhhhhhhhhhhhhhc-CceEEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecCcccccHHHHHHHHHhcCCCE
Confidence 4466666667777788887 8999998884443 4566788888888887752 23 78899999999997
Q ss_pred eeecce--eecchhhhhhhh
Q psy9357 91 FIGNCI--SSFTAFVKRHRD 108 (132)
Q Consensus 91 FIGNcv--SSFTa~V~reR~ 108 (132)
.+.... .....+++..|+
T Consensus 198 v~~~~~~~~~~~~~~~~~~~ 217 (371)
T 4f06_A 198 IFTFLPAGPPTLGFVKAYID 217 (371)
T ss_dssp EEEECCTTHHHHHHHHHHHH
T ss_pred EEEEeccCchhhHHHHHHHH
Confidence 654433 233445555544
No 18
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=72.76 E-value=7.6 Score=31.95 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCc-----ccHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeecc
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNN-----NLNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~-----~~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGNc 95 (132)
++++.+.++++ +.++++|-||.. .+.+++.+.|++.+++++.+ |. ...++.+.-..+|..||=|
T Consensus 31 l~~l~~~l~~~-g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavG 109 (407)
T 1vlj_A 31 IPKIGEEIKNA-GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVG 109 (407)
T ss_dssp GGGHHHHHHHT-TCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHc-CCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 45566666777 789999999843 26889999998777766544 22 3455566667889998654
Q ss_pred e
Q psy9357 96 I 96 (132)
Q Consensus 96 v 96 (132)
-
T Consensus 110 G 110 (407)
T 1vlj_A 110 G 110 (407)
T ss_dssp S
T ss_pred C
Confidence 3
No 19
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=70.78 E-value=16 Score=29.47 Aligned_cols=82 Identities=16% Similarity=0.288 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHH-HHHHhhcCeeeecceeecchhhhh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVD-LAILSQANHFIGNCISSFTAFVKR 105 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vD-l~Il~~A~~FIGNcvSSFTa~V~r 105 (132)
++.+++.++.+.++.++++-|++.-+++...+.|++.+... -+|.-.+.....| ..+++.||.||++. +-+..
T Consensus 247 ~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~-~~v~~~~~lg~~~~~~l~~~ad~vv~~S-----Gg~~~ 320 (396)
T 3dzc_A 247 FERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGV-SNIVLIEPQQYLPFVYLMDRAHIILTDS-----GGIQE 320 (396)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTC-TTEEEECCCCHHHHHHHHHHCSEEEESC-----SGGGT
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCC-CCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHH
Confidence 56788888877766546665654444443455566654321 1222223322223 37899999999984 25668
Q ss_pred hhhcCCCCC
Q psy9357 106 HRDVKGLPS 114 (132)
Q Consensus 106 eR~~~G~ps 114 (132)
|=.+.|.|.
T Consensus 321 EA~a~G~Pv 329 (396)
T 3dzc_A 321 EAPSLGKPV 329 (396)
T ss_dssp TGGGGTCCE
T ss_pred HHHHcCCCE
Confidence 888999995
No 20
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=69.84 E-value=8.4 Score=26.11 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC-CCchHHHHHHHh
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS-DQSPHVDLAILS 86 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~ 86 (132)
++.+.+++- .++-|+||+|.++ ...+|..+=...++.++.+ .+...+-.++..
T Consensus 29 ~v~kai~~g-kaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk 83 (104)
T 4a18_G 29 STIKAIRNG-TAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVELGTACGK 83 (104)
T ss_dssp HHHHHHHHT-CCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTC
T ss_pred HHHHHHHcC-CceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCC
Confidence 445555564 8999999999886 3455544333447888864 666777766653
No 21
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=69.72 E-value=10 Score=27.80 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=41.9
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEe
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~ 73 (132)
..+-+.++....|++....+|.|..|-|.| |..+|+..+-+.-+.-|++|..
T Consensus 56 rtvedkedfrenireiwerypqldvvvivttddkewikdfieeakergvevfv 108 (162)
T 2l82_A 56 RTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFV 108 (162)
T ss_dssp EECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEE
Confidence 356788999999999999998999888877 8888988876666666876654
No 22
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.61 E-value=6.5 Score=26.32 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC-CCchHHHHHH
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS-DQSPHVDLAI 84 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l-~~~~~vDl~I 84 (132)
+++.+.+++- +++-|+||+|.++ ...+|..+-...++.++.+ .+...+-.++
T Consensus 21 ~~v~kai~~g-ka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~ 74 (99)
T 3j21_Z 21 NETIRLAKTG-GAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLL 74 (99)
T ss_dssp HHHHHHHHHT-CCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCGGGGTT
T ss_pred HHHHHHHHcC-CccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHH
Confidence 3455556665 8999999999764 3555555445567777655 4444444443
No 23
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=67.07 E-value=18 Score=27.71 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC--CC---chHHHHHHHhhcCeeeecc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS--DQ---SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l--~~---~~~vDl~Il~~A~~FIGNc 95 (132)
+.++++...+-+|++++|.|..|..+ ..+.++++++..|++++.. .. ..+.=..+..+.|.+....
T Consensus 126 ~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~ 201 (302)
T 3lkv_A 126 VEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALI 201 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeC
Confidence 34455555555568999998876543 4778899998889988865 22 3444445567778776544
No 24
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=66.50 E-value=18 Score=29.33 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHHH-HHHhhcCeeeecceeecchhhhh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDL-AILSQANHFIGNCISSFTAFVKR 105 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vDl-~Il~~A~~FIGNcvSSFTa~V~r 105 (132)
++.+++.++++.++.++++-|++.-+++...+.+++.+... -.|.-++.....|+ .+++.||.+||+. +-+..
T Consensus 241 l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~ 314 (403)
T 3ot5_A 241 MQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGH-ERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQE 314 (403)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHH
Confidence 56777777777776556665555434433345555555321 12222244334455 5789999999884 44568
Q ss_pred hhhcCCCCC
Q psy9357 106 HRDVKGLPS 114 (132)
Q Consensus 106 eR~~~G~ps 114 (132)
|=...|.|.
T Consensus 315 EA~a~g~Pv 323 (403)
T 3ot5_A 315 EAPGMGVPV 323 (403)
T ss_dssp HGGGTTCCE
T ss_pred HHHHhCCCE
Confidence 888999985
No 25
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=65.42 E-value=3.7 Score=34.06 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEe--C---CC----chHHHHHHHhhcCeeeecc
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVP--S---DQ----SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~--l---~~----~~~vDl~Il~~A~~FIGNc 95 (132)
..+++++.+.++++ + ++++|-||..- +.+++.+.|+. +++++. . |. ...++++.-.++|..||=|
T Consensus 38 ~g~l~~l~~~l~~~-g-~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 114 (387)
T 3uhj_A 38 AGEIDKLAAYLAPL-G-KRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVG 114 (387)
T ss_dssp TTTTTTTHHHHGGG-C-SEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHHHc-C-CEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeC
Confidence 34556677778888 7 99999999765 57888888988 876532 2 32 4555666667889998766
Q ss_pred eeec
Q psy9357 96 ISSF 99 (132)
Q Consensus 96 vSSF 99 (132)
-=|-
T Consensus 115 GGs~ 118 (387)
T 3uhj_A 115 GGKT 118 (387)
T ss_dssp SHHH
T ss_pred CcHH
Confidence 5443
No 26
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=65.38 E-value=11 Score=25.25 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC-CCchHHHHHHHh
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS-DQSPHVDLAILS 86 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~ 86 (132)
+++.+.+++- +++-|+||+|.+. ....|..+-...++.++.+ ++...+-.++..
T Consensus 22 ~~v~kai~~g-ka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~ 77 (101)
T 1w41_A 22 RKSIQYAKMG-GAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGR 77 (101)
T ss_dssp HHHHHHHHHT-CCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTC
T ss_pred HHHHHHHHcC-CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCC
Confidence 3455555564 8999999999764 3444555444457887776 667777777664
No 27
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=64.85 E-value=11 Score=25.60 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC-CCchHHHHHHH
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS-DQSPHVDLAIL 85 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il 85 (132)
++.+.+++. .++-|+||+|.++ ...+|..+=...++.++.+ .+...+-.++.
T Consensus 29 ~v~kai~~g-kaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~G 82 (105)
T 3u5e_c 29 STVKSLRQG-KSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVG 82 (105)
T ss_dssp HHHHHHHTT-CCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTT
T ss_pred HHHHHHHcC-CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhC
Confidence 444555554 8999999999875 3455544444457888865 66666666664
No 28
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=64.60 E-value=12 Score=25.17 Aligned_cols=44 Identities=14% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCcEEEEecCCc--ccHHHHHHhhccCCcEEEeCCC
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNN--NLNEPLKEAFKRTEIRIVPSDQ 76 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l~~ 76 (132)
..+.+++++. ++..|+||.... ..+.+|-..+...++++..+|+
T Consensus 55 ~~l~~~~~~~-~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKH-CISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPN 100 (141)
T ss_dssp GGHHHHHHHH-TCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHC-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCC
Confidence 3466667777 899999999543 3567777777778899887765
No 29
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=63.84 E-value=14 Score=25.17 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC-CCchHHHHHHHhh
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQ 87 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~ 87 (132)
++.+.+++- .++-|+||+|.+. ....|..+-...++.++.+ ++...+-.++...
T Consensus 28 ~v~kai~~g-ka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~ 83 (110)
T 3cpq_A 28 RTIKFVKHG-EGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKP 83 (110)
T ss_dssp HHHHHHHTT-CCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCS
T ss_pred HHHHHHHcC-CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCc
Confidence 344445554 8999999999864 4555666555668888887 7777777776653
No 30
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=63.76 E-value=21 Score=24.83 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCCchHHHHHHH
Q psy9357 34 LKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQSPHVDLAIL 85 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il 85 (132)
+.+.+++- .++-|+||.|.++ ....|..+-...++.++..++...+=.++.
T Consensus 28 v~kai~~g-kakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g 80 (121)
T 2lbw_A 28 VVKALRKG-EKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGA 80 (121)
T ss_dssp HHHHHHHS-CCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHT
T ss_pred HHHHHHcC-CceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhC
Confidence 33444454 8999999999887 377788777777888887766555555544
No 31
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase; HET: MSE; 1.90A {Coxiella burnetii}
Probab=63.53 E-value=4.5 Score=31.29 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=27.7
Q ss_pred CcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 44 IKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 44 lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.+.|++||.|.+-+.|+++.|...+++|+++
T Consensus 4 M~~iv~aT~N~~K~~E~~~iL~~~~i~v~~~ 34 (203)
T 3tqu_A 4 MLEIVLASQNSSKLAEMQELLRDLEIKFIPQ 34 (203)
T ss_dssp CEEEEECCCCHHHHHHHHHHTTTSSEEEEEG
T ss_pred CCEEEEEECCHHHHHHHHHHhhhcCcEEEEh
Confidence 3679999999999999999998888999875
No 32
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=63.23 E-value=30 Score=26.62 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=59.9
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcCe
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQANH 90 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~~ 90 (132)
-.|+.....+.+-+++.+. +.++|.|.++... ..+.++++|++.|++++. .+ + .+++..+.-..+|.
T Consensus 122 ~~~~~~~~~~~~~~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~ 200 (379)
T 3n0w_A 122 FLYNFTSIVKTVVQAQLAK-GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKASGAQL 200 (379)
T ss_dssp CSCCHHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHHHHHTCSE
T ss_pred EeCChHHHHHHHHHHHHHc-CCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHHHHCCCCE
Confidence 3467777777777777777 8899998884443 466778888877887764 22 2 67788888888997
Q ss_pred eeecce-eecchhhhhhhhcCCCC
Q psy9357 91 FIGNCI-SSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 91 FIGNcv-SSFTa~V~reR~~~G~p 113 (132)
.+-.+. .....+++..|+ .|+.
T Consensus 201 v~~~~~~~~~~~~~~~~~~-~g~~ 223 (379)
T 3n0w_A 201 IVSTSGGAANINIMKQARE-FGLP 223 (379)
T ss_dssp EEECCCHHHHHHHHHHHHH-TTCS
T ss_pred EEEecccchHHHHHHHHHH-cCCC
Confidence 665444 444455665554 4543
No 33
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=62.68 E-value=24 Score=27.19 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=59.5
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccC--CcEEEeC---C----C-chHHHHHHHhh
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRT--EIRIVPS---D----Q-SPHVDLAILSQ 87 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~--~~~vv~l---~----~-~~~vDl~Il~~ 87 (132)
.-.|+.....+.+-+++.+. +.++|.|..+.+. ..+.++++|++. +++++.. + + .+.+..+.-..
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~ 199 (387)
T 3i45_A 121 RLRPSTYMQAAMLAAEAAKL-PITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAE 199 (387)
T ss_dssp ECSCCHHHHHHHHHHHHTTS-SCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTC
T ss_pred EeCCChHHHHHHHHHHHHHc-CCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCC
Confidence 34588888888888888887 8899999885444 466677888776 7877642 2 2 57777777778
Q ss_pred cCeeeecce-eecchhhhhhhhcCCCC
Q psy9357 88 ANHFIGNCI-SSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 88 A~~FIGNcv-SSFTa~V~reR~~~G~p 113 (132)
+|..|-.+. .....+++..|+ .|++
T Consensus 200 ~d~v~~~~~~~~~~~~~~~~~~-~g~~ 225 (387)
T 3i45_A 200 PEGLFNVLFGADLPKFVREGRV-RGLF 225 (387)
T ss_dssp CSEEEECCCTTHHHHHHHHHHH-HTSS
T ss_pred CCEEEEcCccHHHHHHHHHHHH-cCCC
Confidence 887664433 233444444443 3543
No 34
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=61.58 E-value=15 Score=25.42 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=31.2
Q ss_pred CCcEEEEecCCcc-c-HHHHHHhhccCCcEEEeCCCchHHHHHHHh
Q psy9357 43 QIKYIFVATDNNN-L-NEPLKEAFKRTEIRIVPSDQSPHVDLAILS 86 (132)
Q Consensus 43 ~lk~VfIaTD~~~-~-~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~ 86 (132)
.++-|+||+|.++ . ...|..+-...++.++..++...+-.++..
T Consensus 45 ka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~ 90 (120)
T 1vq8_F 45 SAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGL 90 (120)
T ss_dssp CCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTTC
T ss_pred CceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCC
Confidence 8999999999876 3 677777666667776655666666665544
No 35
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=61.52 E-value=35 Score=25.98 Aligned_cols=79 Identities=15% Similarity=0.349 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecC-CcccHHHHHHhhccC-CcEEEeCCCchHHHH-HHHhhcCeeeecceeecchhhh
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATD-NNNLNEPLKEAFKRT-EIRIVPSDQSPHVDL-AILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD-~~~~~~eLk~~l~~~-~~~vv~l~~~~~vDl-~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
+.+++.++.+.++.++++-++ ..+ .....++|++.+... .+.++ .....-|+ .+++.||.||+.. +-+.
T Consensus 223 ~~li~a~~~l~~~~~~~~l~i-~~g~~~~~~~~l~~~~~~~~~v~~~--g~~~~~~~~~~~~~ad~~v~~S-----g~~~ 294 (384)
T 1vgv_A 223 EEICHALADIATTHQDIQIVY-PVHLNPNVREPVNRILGHVKNVILI--DPQEYLPFVWLMNHAWLILTDS-----GGIQ 294 (384)
T ss_dssp HHHHHHHHHHHHHCTTEEEEE-ECCBCHHHHHHHHHHHTTCTTEEEE--CCCCHHHHHHHHHHCSEEEESS-----STGG
T ss_pred HHHHHHHHHHHhhCCCeEEEE-EcCCCHHHHHHHHHHhhcCCCEEEe--CCCCHHHHHHHHHhCcEEEECC-----cchH
Confidence 667777777666653454343 343 333566777765431 23332 22222354 5789999999875 3346
Q ss_pred hhhhcCCCCC
Q psy9357 105 RHRDVKGLPS 114 (132)
Q Consensus 105 reR~~~G~ps 114 (132)
-|=++.|.|.
T Consensus 295 lEA~a~G~Pv 304 (384)
T 1vgv_A 295 EEAPSLGKPV 304 (384)
T ss_dssp GTGGGGTCCE
T ss_pred HHHHHcCCCE
Confidence 7778889983
No 36
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=61.49 E-value=41 Score=27.98 Aligned_cols=86 Identities=9% Similarity=0.071 Sum_probs=57.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc---cHHHHHHhhccCCcEEEe---CC---C----chHHHHHHH-h
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNN---LNEPLKEAFKRTEIRIVP---SD---Q----SPHVDLAIL-S 86 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~---~~~eLk~~l~~~~~~vv~---l~---~----~~~vDl~Il-~ 86 (132)
+-.|+.....+.+.++++.. +-+.|.|.. |.+. ..+.|++.+++.|+.|+. ++ . .+++..++- +
T Consensus 165 r~~p~d~~~~~a~~~ll~~f-gw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s 243 (555)
T 2e4u_A 165 RTVPPDFYQAKAMAEILRFF-NWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKP 243 (555)
T ss_dssp ESSCCHHHHHHHHHHHHHHT-TCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCT
T ss_pred eeCCChHHHHHHHHHHHHHc-CCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccC
Confidence 45688888888888888887 888888776 4433 467788888888887753 23 2 234555554 6
Q ss_pred hcCeeeecceee-cchhhhhhhh
Q psy9357 87 QANHFIGNCISS-FTAFVKRHRD 108 (132)
Q Consensus 87 ~A~~FIGNcvSS-FTa~V~reR~ 108 (132)
.||+.|--+-.. ...+++..|+
T Consensus 244 ~a~vIi~~~~~~~~~~~~~~~~~ 266 (555)
T 2e4u_A 244 NARVVVLFMRSDDSRELIAAANR 266 (555)
T ss_dssp TCCEEEEECCHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCHHHHHHHHHHHHH
Confidence 899988765433 3334444444
No 37
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=61.32 E-value=17 Score=27.78 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=61.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHHHHHhhcC
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQAN 89 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~A~ 89 (132)
.-.|+.....+.+-+.+.+. +.|+|.|..+.+. ..+.++++|++.|++++. . .+ .+++..+.-..+|
T Consensus 120 ~~~~~~~~~~~~~~~~l~~~-g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d 198 (364)
T 3lop_A 120 PIKASYQQEIDKMITALVTI-GVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQ 198 (364)
T ss_dssp CCSCCHHHHHHHHHHHHHHT-TCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCS
T ss_pred EeCCChHHHHHHHHHHHHHc-CCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCC
Confidence 44677777777877778777 8888888874444 456678888877766542 2 22 5777777777888
Q ss_pred eeeecc-eeecchhhhhhhhcCCCCCCcccCC
Q psy9357 90 HFIGNC-ISSFTAFVKRHRDVKGLPSSFWAFP 120 (132)
Q Consensus 90 ~FIGNc-vSSFTa~V~reR~~~G~ps~F~g~~ 120 (132)
..|-.+ -.....+++..|+ .|+...+.|++
T Consensus 199 ~v~~~~~~~~a~~~~~~~~~-~g~~~~~i~~~ 229 (364)
T 3lop_A 199 AIFLGATAEPAAQFVRQYRA-RGGEAQLLGLS 229 (364)
T ss_dssp EEEEESCHHHHHHHHHHHHH-TTCCCEEEECT
T ss_pred EEEEecCcHHHHHHHHHHHH-cCCCCeEEEec
Confidence 766533 2334445555554 35543344443
No 38
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=59.85 E-value=30 Score=28.65 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=56.4
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc---cHHHHHHhhccCCcEEEe---CCC-------chHHHHHHH--
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNN---LNEPLKEAFKRTEIRIVP---SDQ-------SPHVDLAIL-- 85 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~---~~~eLk~~l~~~~~~vv~---l~~-------~~~vDl~Il-- 85 (132)
+-.|+.....+.+-++++.. +.+.|.|.. |.+. .++.|++++++.|+.|+- ++. .+++..+--
T Consensus 176 rt~psd~~~~~ai~~ll~~f-gw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~ 254 (496)
T 3ks9_A 176 RVVPSDTLQARAMLDIVKRY-NWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERL 254 (496)
T ss_dssp ESSCCTHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTT
T ss_pred EecCChHHHHHHHHHHHHHc-CCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhcc
Confidence 35577777778888888887 889988877 5443 578888899888887763 231 334444333
Q ss_pred hhcCeeeeccee-ecchhhhhhhh
Q psy9357 86 SQANHFIGNCIS-SFTAFVKRHRD 108 (132)
Q Consensus 86 ~~A~~FIGNcvS-SFTa~V~reR~ 108 (132)
..|++.|+-|.. +...+++..|+
T Consensus 255 ~~a~vii~~~~~~~~~~l~~~~~~ 278 (496)
T 3ks9_A 255 PKARVVVCFCEGMTVRGLLSAMRR 278 (496)
T ss_dssp TTTCEEEEECCHHHHHHHHHHHHH
T ss_pred CceEEEEEecChHHHHHHHHHHHH
Confidence 378988886653 34445554443
No 39
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=59.51 E-value=19 Score=27.71 Aligned_cols=87 Identities=7% Similarity=0.106 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHh--CCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHH-HHHhhcCeeeecceeecch
Q psy9357 26 SVETVVRQLKRVVREH--GQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDL-AILSQANHFIGNCISSFTA 101 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~--~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl-~Il~~A~~FIGNcvSSFTa 101 (132)
.++.+++.++.+.++. ++++=+++..+...+.++|++..++.+ +++.+ ...+.-|+ .+++.||+||-...+-=..
T Consensus 266 g~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~ 344 (439)
T 3fro_A 266 GVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFG 344 (439)
T ss_dssp CHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSC
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCcc
Confidence 4677777777766653 366666665555445577777766666 66655 43445444 4778999999554332223
Q ss_pred hhhhhhhcCCCC
Q psy9357 102 FVKRHRDVKGLP 113 (132)
Q Consensus 102 ~V~reR~~~G~p 113 (132)
.+.-|=++.|.|
T Consensus 345 ~~~~EAma~G~P 356 (439)
T 3fro_A 345 LVALEAMCLGAI 356 (439)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHCCCC
Confidence 344555666666
No 40
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=59.39 E-value=8.2 Score=31.11 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEE--eC---CC----chHHHHHHHhhcCeeeecc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIV--PS---DQ----SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv--~l---~~----~~~vDl~Il~~A~~FIGNc 95 (132)
.++++.+.++++ + ++++|-||... +.+++.+.|+..+++++ .. |. ...++++.-.++|..||=|
T Consensus 19 ~~~~l~~~l~~~-g-~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavG 94 (370)
T 1jq5_A 19 VITKIANYLEGI-G-NKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVG 94 (370)
T ss_dssp GGGGHHHHHTTT-C-SEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHc-C-CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 344566666666 6 99999999653 68899999987777653 23 22 3444555556789988553
No 41
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=59.33 E-value=44 Score=25.79 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=57.1
Q ss_pred ccCCCHHHHHHHHHHHHHH-hCCCcEEEEecC-Ccc----cHHHHHHhhccCCcEEEe---CC-C----chHHHH--HHH
Q psy9357 22 LCFPSVETVVRQLKRVVRE-HGQIKYIFVATD-NNN----LNEPLKEAFKRTEIRIVP---SD-Q----SPHVDL--AIL 85 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~-~~~lk~VfIaTD-~~~----~~~eLk~~l~~~~~~vv~---l~-~----~~~vDl--~Il 85 (132)
...|+.......+-+.+.+ + +.++|.|.++ .+. ..+.++++|++.|++++. ++ . .+++.. +.-
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~-g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~ 197 (391)
T 3eaf_A 119 YPAPDYSTQACSGLAFLASEF-GQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLA 197 (391)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH-CSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred EeCCCHHHHHHHHHHHHHHhc-CCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHH
Confidence 4556666655555565554 6 8899998887 443 577788899888888764 22 1 456666 666
Q ss_pred hhcCeeeecce-eecchhhhhhhhcCCCC
Q psy9357 86 SQANHFIGNCI-SSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 86 ~~A~~FIGNcv-SSFTa~V~reR~~~G~p 113 (132)
..+|..+-.+. .....+++..|+ .|+.
T Consensus 198 ~~~dav~~~~~~~~~~~~~~~~~~-~g~~ 225 (391)
T 3eaf_A 198 ADPDYVWCGNTISSCSLLGRAMAK-VGLD 225 (391)
T ss_dssp TCCSEEEECSCHHHHHHHHHHHHH-HTCC
T ss_pred cCCCEEEEecCcHHHHHHHHHHHH-CCCC
Confidence 67887766554 444455554544 3543
No 42
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=58.99 E-value=34 Score=26.14 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=58.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcCe
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQANH 90 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~~ 90 (132)
-.|+.....+.+-+.+.+. +.++|.|.++... ..+.++++|++.|++++. .+ + .+++..+.-..+|.
T Consensus 120 ~~~~~~~~~~~~~~~l~~~-g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~ 198 (375)
T 3i09_A 120 YAYDTMALAKGTGSAVVKQ-GGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQI 198 (375)
T ss_dssp CSCCHHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSE
T ss_pred eeCChHHHHHHHHHHHHHc-CCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCE
Confidence 4467777777777777777 8899998884443 466778888888888764 22 2 67777777778886
Q ss_pred ee-ecceeecchhhhhhhhcCCC
Q psy9357 91 FI-GNCISSFTAFVKRHRDVKGL 112 (132)
Q Consensus 91 FI-GNcvSSFTa~V~reR~~~G~ 112 (132)
.+ .+.......+++..|+ .|+
T Consensus 199 v~~~~~~~~~~~~~~~~~~-~g~ 220 (375)
T 3i09_A 199 LGLANAGGDTVNAIKAAKE-FGI 220 (375)
T ss_dssp EEEECCHHHHHHHHHHHHH-TTG
T ss_pred EEEecCchhHHHHHHHHHH-cCC
Confidence 64 4433344455655554 344
No 43
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=58.92 E-value=12 Score=24.27 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchH
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPH 79 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~ 79 (132)
++.+.+++- +++-|+||.|.++ ....|..+=...++.++..+....
T Consensus 18 ~v~kai~~g-kaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~e 64 (82)
T 3v7e_A 18 QTVKALKRG-SVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKK 64 (82)
T ss_dssp HHHHHHTTT-CEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHcC-CeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 444455554 8999999999886 244444443445777776544333
No 44
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=58.12 E-value=37 Score=25.65 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=58.4
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhhcCe
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQANH 90 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~A~~ 90 (132)
-.|+..+..+.+-+++.+. +.++|.|.++... ..+.++++|++.|++++.. .+ .+++..+.-..+|.
T Consensus 119 ~~~~~~~~~~~~~~~l~~~-g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~ 197 (368)
T 4eyg_A 119 TSFTLAQSSIIIGDWAAKN-GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDA 197 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSE
T ss_pred ecCChHHHHHHHHHHHHHc-CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCE
Confidence 4578888888888888887 8899888774333 3667888888888877641 22 67777777778887
Q ss_pred eeeccee-ecchhhhhhhhcCCC
Q psy9357 91 FIGNCIS-SFTAFVKRHRDVKGL 112 (132)
Q Consensus 91 FIGNcvS-SFTa~V~reR~~~G~ 112 (132)
.+-.+-. ....+++..|+ .|+
T Consensus 198 v~~~~~~~~a~~~~~~~~~-~g~ 219 (368)
T 4eyg_A 198 MFVFVPAGQGGNFMKQFAE-RGL 219 (368)
T ss_dssp EEEECCTTCHHHHHHHHHH-TTG
T ss_pred EEEeccchHHHHHHHHHHH-cCC
Confidence 7752222 33445554543 344
No 45
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=57.54 E-value=16 Score=25.43 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=31.8
Q ss_pred CCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCCchHHHHHHHh
Q psy9357 42 GQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQSPHVDLAILS 86 (132)
Q Consensus 42 ~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~ 86 (132)
+.++-|+||+|.++ ....|..+-...++.++..++...+-.++..
T Consensus 43 gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G~ 89 (124)
T 2fc3_A 43 GLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGI 89 (124)
T ss_dssp TCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHTTC
T ss_pred CCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCC
Confidence 38999999999865 3677777666667776655666666666554
No 46
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=57.52 E-value=23 Score=27.95 Aligned_cols=84 Identities=8% Similarity=0.133 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEeC---C--C----chHHHHHHHhhcCeee
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVPS---D--Q----SPHVDLAILSQANHFI 92 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~l---~--~----~~~vDl~Il~~A~~FI 92 (132)
|+ ..+.+.++++.. +.++|.|..|.+. .++++++++++.|++|+.. + + .+++..+--..+|++|
T Consensus 115 p~---~~~a~~~~~~~~-gw~~vaii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii 190 (389)
T 3o21_A 115 PA---LKGAILSLLSYY-KWEKFVYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYL 190 (389)
T ss_dssp CC---SHHHHHHHHHHH-TCCEEEEEECSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEE
T ss_pred cC---HHHHHHHHHHhC-CCCEEEEEEcCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 77 345555566777 8999999987654 4678888888888877642 2 1 4666677777889766
Q ss_pred eccee-ecchhhhhhhhcCCCC
Q psy9357 93 GNCIS-SFTAFVKRHRDVKGLP 113 (132)
Q Consensus 93 GNcvS-SFTa~V~reR~~~G~p 113 (132)
--|-. ....+++.-|+ +|+.
T Consensus 191 ~~~~~~~~~~i~~qa~~-~g~~ 211 (389)
T 3o21_A 191 IDCEVERINTILEQVVI-LGKH 211 (389)
T ss_dssp EESCHHHHHHHHHHHHH-HCSC
T ss_pred EECCHHHHHHHHHHHHH-cCcc
Confidence 54443 33344555454 4554
No 47
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=57.30 E-value=63 Score=24.84 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcE--------EEeC-CCchHHHHH-HHhhcCee
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIR--------IVPS-DQSPHVDLA-ILSQANHF 91 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~--------vv~l-~~~~~vDl~-Il~~A~~F 91 (132)
.++.+++.++.+.++.++++=++|..+... ..+++++..++.++. ++.+ ...+.-|+. +++.||+|
T Consensus 198 g~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~ 277 (413)
T 3oy2_A 198 RLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVI 277 (413)
T ss_dssp THHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEE
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEE
Confidence 457777878777777657877777764432 235666665555543 4554 444433333 77899999
Q ss_pred eecceeecchhhhhhhhcCCCC
Q psy9357 92 IGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 92 IGNcvSSFTa~V~reR~~~G~p 113 (132)
|-...+-=-..+.-|=+..|.|
T Consensus 278 v~pS~~E~~~~~~lEAma~G~P 299 (413)
T 3oy2_A 278 VNCSSGEGFGLCSAEGAVLGKP 299 (413)
T ss_dssp EECCSCCSSCHHHHHHHTTTCC
T ss_pred EeCCCcCCCCcHHHHHHHcCCC
Confidence 9644321123455666777877
No 48
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=57.13 E-value=17 Score=25.82 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=33.0
Q ss_pred CCCcEEEEecCCccc--HHHHHHhhccCCcEEEeCCCchHHHHHHHhh
Q psy9357 42 GQIKYIFVATDNNNL--NEPLKEAFKRTEIRIVPSDQSPHVDLAILSQ 87 (132)
Q Consensus 42 ~~lk~VfIaTD~~~~--~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~~ 87 (132)
++++-|+||+|.++. +..|..+-...++.++..+....+-.++...
T Consensus 56 gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~ 103 (135)
T 2aif_A 56 GIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVS 103 (135)
T ss_dssp TCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCS
T ss_pred CCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCC
Confidence 378999999998874 4777777776778777656566666665543
No 49
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=57.01 E-value=67 Score=25.02 Aligned_cols=96 Identities=6% Similarity=0.034 Sum_probs=60.4
Q ss_pred ccCCCHHHHHHHHHHHHHHh-------CCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHH
Q psy9357 22 LCFPSVETVVRQLKRVVREH-------GQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDL 82 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~-------~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl 82 (132)
+..|+.....+.+-+.++.. .+.++|.|..+.+. ..+.+++++++.|++|+. + .| .+++..
T Consensus 135 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~ 214 (419)
T 3h5l_A 135 QYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAK 214 (419)
T ss_dssp ESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHH
T ss_pred EeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHH
Confidence 35666665555555554431 15789988886554 567788888888888874 2 12 678888
Q ss_pred HHHhhcCeeeeccee--ecchhhhhhhhcCCCCCCccc
Q psy9357 83 AILSQANHFIGNCIS--SFTAFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 83 ~Il~~A~~FIGNcvS--SFTa~V~reR~~~G~ps~F~g 118 (132)
+--..+|+.+-.+.. ....+++..|+ .|++..+++
T Consensus 215 i~~~~~d~v~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 251 (419)
T 3h5l_A 215 LRADPPAVIVVTHFYPQDQALFMNQFMT-DPTNSLVYL 251 (419)
T ss_dssp HHHSCCSEEEECCCCHHHHHHHHHHHTT-SCCSCEEEE
T ss_pred HHhcCCCEEEEccccCchHHHHHHHHHH-cCCCceEEe
Confidence 888899977765442 34555655554 465544443
No 50
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=56.98 E-value=12 Score=27.55 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCc-EEEEec-CCc--ccHHHHHHhhccCCc--EEEe--CCCchHHHHHHHhhcCeeeecce
Q psy9357 25 PSVETVVRQLKRVVREHGQIK-YIFVAT-DNN--NLNEPLKEAFKRTEI--RIVP--SDQSPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk-~VfIaT-D~~--~~~~eLk~~l~~~~~--~vv~--l~~~~~vDl~Il~~A~~FIGNcv 96 (132)
+..++++++|++.+++. + +|||+. ++- ..+.+|++.|++.+. .|++ +-..+.=+.-+-. .++|.|++.
T Consensus 4 ~~K~~~v~el~~~l~~~---~~~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~-~~~l~G~~a 79 (173)
T 2j01_J 4 KRNVELLATLKENLERA---QGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPE-LDGLQGPSA 79 (173)
T ss_pred HHHHHHHHHHHHHHHHC---CCEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcCCCCc-cccccCCEE
Confidence 35678999999999976 6 888887 533 378899999987654 5554 1001111111234 788999886
Q ss_pred eecc
Q psy9357 97 SSFT 100 (132)
Q Consensus 97 SSFT 100 (132)
=-||
T Consensus 80 ~~fs 83 (173)
T 2j01_J 80 VVFY 83 (173)
T ss_pred EEEe
Confidence 6665
No 51
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=56.84 E-value=25 Score=24.23 Aligned_cols=88 Identities=8% Similarity=0.117 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHH--HHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe-CCCchHHH-HHHHhhcCeeeecceeecc
Q psy9357 25 PSVETVVRQLKRVV--REHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP-SDQSPHVD-LAILSQANHFIGNCISSFT 100 (132)
Q Consensus 25 Ps~~~I~~~ik~~~--~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~-l~~~~~vD-l~Il~~A~~FIGNcvSSFT 100 (132)
-.++.+++.++.+. ++.++++-+++..+.+.+.++|++..++.+ .|+- +...+.-| ..+++.||+||-.....=.
T Consensus 50 K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~ 128 (200)
T 2bfw_A 50 KGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPF 128 (200)
T ss_dssp SCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSS
T ss_pred CCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCc
Confidence 45677777777775 443355555554433336777888777665 4544 43322212 3567899999964322111
Q ss_pred hhhhhhhhcCCCC
Q psy9357 101 AFVKRHRDVKGLP 113 (132)
Q Consensus 101 a~V~reR~~~G~p 113 (132)
..+.-|=...|.|
T Consensus 129 ~~~~~Ea~a~G~P 141 (200)
T 2bfw_A 129 GLVALEAMCLGAI 141 (200)
T ss_dssp CHHHHHHHHTTCE
T ss_pred cHHHHHHHHCCCC
Confidence 3344555667766
No 52
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=55.86 E-value=30 Score=26.81 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=59.0
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc---cHHHHHHhhccCCcEE-----------------------E-eC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNN---LNEPLKEAFKRTEIRI-----------------------V-PS 74 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~---~~~eLk~~l~~~~~~v-----------------------v-~l 74 (132)
-.|+.....+.+.++++.. +-+.|.|.. |.+. ..+.|+++|++.|.++ + ..
T Consensus 119 ~~~~~~~~~~a~~~~~~~~-gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~ 197 (384)
T 3qek_A 119 TVPPYSHQALVWFEMMRLF-NWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQF 197 (384)
T ss_dssp SSCCGGGHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEE
T ss_pred ecCChHHHHHHHHHHHHHc-CCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceeccc
Confidence 4567777777888888887 899999877 4432 4578888888766543 1 11
Q ss_pred ----CC-chHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC
Q psy9357 75 ----DQ-SPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 75 ----~~-~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
.+ .+++..+--..||++|--|-..-...+.++=...|+.
T Consensus 198 ~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~ 241 (384)
T 3qek_A 198 EPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMT 241 (384)
T ss_dssp CTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHHHHTTCS
T ss_pred CCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHcCCc
Confidence 22 6778888889999999888776666665554445554
No 53
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=55.37 E-value=16 Score=25.40 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCCchHHHHHHHh
Q psy9357 34 LKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQSPHVDLAILS 86 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~ 86 (132)
+.+.+++- .++-|+||+|.++ ....|..+-...++.++..++...+-.++..
T Consensus 37 v~kai~~g-ka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~ 90 (120)
T 1xbi_A 37 VTKAVERG-IAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGL 90 (120)
T ss_dssp HHHHHHHT-CCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHTTC
T ss_pred HHHHHHcC-CceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCC
Confidence 33344443 8999999999866 3666666666567776655666666666554
No 54
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=54.79 E-value=15 Score=25.32 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCCchHHHHHHHh
Q psy9357 42 GQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQSPHVDLAILS 86 (132)
Q Consensus 42 ~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~ 86 (132)
+.++-|+||+|.++ ....|..+-...++.++..++...+-.++..
T Consensus 42 gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~ 88 (119)
T 1rlg_A 42 GLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGI 88 (119)
T ss_dssp TCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHTTC
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC
Confidence 38999999999865 3677777666667776655666666666554
No 55
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=54.49 E-value=57 Score=25.05 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=56.8
Q ss_pred cCCCHHHHHHHHHHHHHH-hCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcC
Q psy9357 23 CFPSVETVVRQLKRVVRE-HGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQAN 89 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~-~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~ 89 (132)
..|+.....+.+-+.+.+ + +.++|.|.++.+. ..+.++++|++.|++++. ++ + .+++..+.-..+|
T Consensus 122 ~~~~~~~~~~~~~~~l~~~~-g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d 200 (392)
T 3lkb_A 122 PTTSYSEQVVALLEYIAREK-KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVE 200 (392)
T ss_dssp EECCHHHHHHHHHHHHHHHC-TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCC
Confidence 456666666666655554 5 7789988885444 466788888888887764 21 2 5677777777888
Q ss_pred eeeecc-eeecchhhhhhhhcCCCCCCcc
Q psy9357 90 HFIGNC-ISSFTAFVKRHRDVKGLPSSFW 117 (132)
Q Consensus 90 ~FIGNc-vSSFTa~V~reR~~~G~ps~F~ 117 (132)
..+-.+ -.....+++..|+ .|+..-+.
T Consensus 201 av~~~~~~~~a~~~~~~~~~-~g~~~~~~ 228 (392)
T 3lkb_A 201 YVVHQNVAGPVANILKDAKR-LGLKMRHL 228 (392)
T ss_dssp EEEEESCHHHHHHHHHHHHH-TTCCCEEE
T ss_pred EEEEecCcchHHHHHHHHHH-cCCCceEE
Confidence 776322 2233344454444 56544333
No 56
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=53.84 E-value=22 Score=24.84 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCCchHHHHHHH
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQSPHVDLAIL 85 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il 85 (132)
++.+.+++- +++-|+||+|.++ .+..|..+-...++.++..+....+-.++.
T Consensus 38 ~v~kai~~g-ka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G 91 (122)
T 3o85_A 38 EALKQVNRG-KAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRACN 91 (122)
T ss_dssp HHHHHHHTT-CCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHHHTT
T ss_pred HHHHHHHcC-CceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhC
Confidence 344444454 8999999999875 357776666666776555444444444443
No 57
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=53.57 E-value=19 Score=24.98 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEeC-CCchHHHHHH
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVPS-DQSPHVDLAI 84 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~l-~~~~~vDl~I 84 (132)
++.+.+++. .++-|+||.|.++. ..+|..+=...++.++.. .+...+=.++
T Consensus 33 ~t~kai~~g-kakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~ 85 (112)
T 3iz5_f 33 TVLKTLRSS-LGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTAC 85 (112)
T ss_dssp HHHHHHHTT-CCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCTHHHHH
T ss_pred HHHHHHHcC-CceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHHHHHHh
Confidence 334444444 89999999998863 445554444557888877 4555555554
No 58
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=53.39 E-value=53 Score=25.62 Aligned_cols=90 Identities=10% Similarity=0.003 Sum_probs=57.4
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEe------cCCcc---cHHHHHHhhcc-CCcEEEeC---C-C----chHHHH
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVA------TDNNN---LNEPLKEAFKR-TEIRIVPS---D-Q----SPHVDL 82 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIa------TD~~~---~~~eLk~~l~~-~~~~vv~l---~-~----~~~vDl 82 (132)
-+-.|+.....+.+.++++.. +.+.|.|. ++.+. -+.++.+.|.+ .|+.|+.. + + .+++..
T Consensus 124 fr~~p~~~~~~~a~~~~l~~~-~w~~v~ii~~~d~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~ 202 (435)
T 1dp4_A 124 TRTGPSHVKLGDFVTALHRRL-GWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLLRA 202 (435)
T ss_dssp EECSCCHHHHHHHHHHHHHHH-TCCSEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHCCEEEEEEECTTCGGGHHHHHHH
T ss_pred EEecCcHHHHHHHHHHHHHHC-CCcEEEEEEEccCCCCcchHHHHHHHHHHHHHhhcCeEEEEEEEecCchhhHHHHHHH
Confidence 345688888888888888888 88999888 53332 25567777766 68776642 2 2 344554
Q ss_pred HHHhhcCeeeecceeecch-hhhhhhhcCCCC
Q psy9357 83 AILSQANHFIGNCISSFTA-FVKRHRDVKGLP 113 (132)
Q Consensus 83 ~Il~~A~~FIGNcvSSFTa-~V~reR~~~G~p 113 (132)
+-- .||++|.-+...-.. +++.-|+ .|+.
T Consensus 203 i~~-~~~viv~~~~~~~~~~~~~~a~~-~g~~ 232 (435)
T 1dp4_A 203 VRR-KGRVIYICSSPDAFRNLMLLALN-AGLT 232 (435)
T ss_dssp HHH-HCSEEEEESCHHHHHHHHHHHHH-TTCC
T ss_pred HHh-hCceEEEecChHHHHHHHHHHHH-cCCC
Confidence 444 899999877654333 3344443 4543
No 59
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1 PDB: 2q16_A* 2pyu_A*
Probab=53.22 E-value=8.6 Score=30.17 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=27.8
Q ss_pred CcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 44 IKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 44 lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.+.|++||.|..-+.|+++.|...+++|+++
T Consensus 23 M~~iv~AT~N~~Kl~E~~~iL~~~~iev~~~ 53 (221)
T 1k7k_A 23 MQKVVLATGNVGKVRELASLLSDFGLDIVAQ 53 (221)
T ss_dssp CEEEEESCCCHHHHHHHHHHHGGGTEEEEET
T ss_pred CcEEEEEcCCHHHHHHHHHHhhhcCeEEEEh
Confidence 4579999999999999999998878999987
No 60
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=52.20 E-value=8.7 Score=30.74 Aligned_cols=64 Identities=14% Similarity=0.308 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEE--Ee-CC--CchHH---HHHHHhhcCeeeecc
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRI--VP-SD--QSPHV---DLAILSQANHFIGNC 95 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~v--v~-l~--~~~~v---Dl~Il~~A~~FIGNc 95 (132)
++++.+.++++ +.++++|-||... +.+++.+.|+..++++ +. .| ....| +.+.-.++|..||=|
T Consensus 22 ~~~l~~~l~~~-g~~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~d~IIavG 96 (354)
T 3ce9_A 22 IYNIGQIIKKG-NFKRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTNAFKIPAEVDALIGIG 96 (354)
T ss_dssp GGGHHHHHGGG-TCSEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHHHTTSCTTCCEEEEEE
T ss_pred HHHHHHHHHhc-CCCeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHhhhcCCCEEEEEC
Confidence 34455666666 7789999998763 5788999998767654 33 33 22223 333345678888543
No 61
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=51.85 E-value=64 Score=24.37 Aligned_cols=80 Identities=9% Similarity=0.042 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCcEEEEecCCccc---HHHHHHhhccCCcEEEeC---C-C----chHHHHHHHhhcCeeeecceeecch
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNL---NEPLKEAFKRTEIRIVPS---D-Q----SPHVDLAILSQANHFIGNCISSFTA 101 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~---~~eLk~~l~~~~~~vv~l---~-~----~~~vDl~Il~~A~~FIGNcvSSFTa 101 (132)
.+..+++.. +-+.|-|.+|.+.+ +.++.+.+.+.++.|+.. + . .+++..+--..++++|-.|-..-..
T Consensus 120 a~~~l~~~~-~w~~vaii~~~d~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~ 198 (389)
T 4gpa_A 120 ALLSLLDHY-EWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQ 198 (389)
T ss_dssp HHHHHHHHT-TCCEEEEEECSTTCSHHHHHHHHHHHTTTCEEEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCHHHHH
T ss_pred HHHHHHHHc-CCcEEEEEEecchhhHHHHHHHHHHHhcCceEEEEeecCCcchhHHHHHHHhhccCCcEEEEEechhHHH
Confidence 445567777 89999998876664 455666666667776643 1 1 5677777788899998877666555
Q ss_pred hhhhhhhcCCCC
Q psy9357 102 FVKRHRDVKGLP 113 (132)
Q Consensus 102 ~V~reR~~~G~p 113 (132)
.+-++=..+|+.
T Consensus 199 ~il~~a~~~g~~ 210 (389)
T 4gpa_A 199 NILEQIVSVGKH 210 (389)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHhCCC
Confidence 554433334543
No 62
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine triphosphate pyrophosphohydrolase, inosine triphosphatase deficiency, ITP, IMP; 1.09A {Homo sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Probab=51.09 E-value=16 Score=27.98 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=27.5
Q ss_pred CCcEEEEecCCcccHHHHHHhhcc-CCcEEEeC
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKR-TEIRIVPS 74 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~-~~~~vv~l 74 (132)
..+.|++||.|.+-+.|+++.|.. .+++|+++
T Consensus 8 ~m~~iv~aT~N~~K~~E~~~iL~~~~~i~v~~~ 40 (196)
T 2car_A 8 VGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQ 40 (196)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHCTTCCSEEEEE
T ss_pred ccceEEEEcCCHHHHHHHHHHcCCCCCcEEEEC
Confidence 456799999999999999999987 47888875
No 63
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=50.29 E-value=62 Score=24.10 Aligned_cols=86 Identities=8% Similarity=0.040 Sum_probs=56.4
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcC
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQAN 89 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~ 89 (132)
...|+-....+.+-+.+.+. +.++|.+.++... ..+.++++|++.|++++. .+ + .+.+..+.-..+|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d 192 (362)
T 3snr_A 114 VMPQPIPIMGKVLYEHMKKN-NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPD 192 (362)
T ss_dssp ECSCCHHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCS
T ss_pred ecCCChHHHHHHHHHHHHhc-CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCC
Confidence 45677788888888888887 8888888774443 456677888888887663 21 2 5667766667777
Q ss_pred eeeecc-eeecchhhhhhhh
Q psy9357 90 HFIGNC-ISSFTAFVKRHRD 108 (132)
Q Consensus 90 ~FIGNc-vSSFTa~V~reR~ 108 (132)
..+-.+ -.....+++..|+
T Consensus 193 av~~~~~~~~a~~~~~~~~~ 212 (362)
T 3snr_A 193 AILVGASGTAAALPQTTLRE 212 (362)
T ss_dssp EEEEECCHHHHHHHHHHHHH
T ss_pred EEEEecCcchHHHHHHHHHH
Confidence 655433 4444455555554
No 64
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=50.07 E-value=72 Score=24.04 Aligned_cols=91 Identities=10% Similarity=0.100 Sum_probs=59.8
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHHHHHhhcC
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQAN 89 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~A~ 89 (132)
...|+-....+.+-+.+.+. +.++|.|..+.+. ..+.++++|++.|++++. . .+ .+++..+.-..+|
T Consensus 138 ~~~~~~~~~~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d 216 (386)
T 3sg0_A 138 KVVPNDDIMAEAIGKYIAKT-GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPD 216 (386)
T ss_dssp ECSCCHHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCS
T ss_pred ecCCCcHHHHHHHHHHHHhc-CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCC
Confidence 45688888888888888887 8899888874443 356677788777887763 1 12 5677777777788
Q ss_pred eee-ecceeecchhhhhhhhcCCCCC
Q psy9357 90 HFI-GNCISSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 90 ~FI-GNcvSSFTa~V~reR~~~G~ps 114 (132)
..+ .+.-.....+++..|+ .|+..
T Consensus 217 av~~~~~~~~a~~~~~~~~~-~g~~~ 241 (386)
T 3sg0_A 217 AVFIASAGTPAVLPQKALRE-RGFKG 241 (386)
T ss_dssp EEEEECCSGGGHHHHHHHHH-TTCCS
T ss_pred EEEEecCcchHHHHHHHHHH-cCCCC
Confidence 654 3333444555665554 45543
No 65
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=49.47 E-value=19 Score=25.55 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=21.2
Q ss_pred HHHHHHhCCCcEEEEecCCcccHHHHHHhhcc
Q psy9357 35 KRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66 (132)
Q Consensus 35 k~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~ 66 (132)
..+.... +-+.|+|.||++.-=+.|++.|.+
T Consensus 42 ~~I~~~~-~~r~VIi~TD~D~~GekIRk~i~~ 72 (119)
T 2fcj_A 42 EELADEL-EGYDVYLLADADEAGEKLRRQFRR 72 (119)
T ss_dssp HHHHHHT-TTSEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHh-cCCCEEEEECCCccHHHHHHHHHH
Confidence 3333443 579999999999866666665543
No 66
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=49.40 E-value=22 Score=25.35 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=30.8
Q ss_pred CCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCCchHHHHHHH
Q psy9357 43 QIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQSPHVDLAIL 85 (132)
Q Consensus 43 ~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~~~~vDl~Il 85 (132)
+++-|+||.|.++ ....|..+-+..++.++..+....+=.++.
T Consensus 48 kakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G 92 (134)
T 2ale_A 48 ISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACG 92 (134)
T ss_dssp CEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHHHTT
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhC
Confidence 8999999999887 477788777777887766555444444443
No 67
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=48.46 E-value=15 Score=32.21 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
.|+.+.+++.|+++++ ++..||+|||++.+ ..+|-+.++
T Consensus 86 ~~~k~~~~~~lk~l~k---~ad~iiiAtD~DREGE~I~~~i~~~~~ 128 (592)
T 1mw9_X 86 LPGKEKVVSELKQLAE---KADHIYLATDLDREGEAIAWHLREVIG 128 (592)
T ss_dssp CTTCHHHHHHHHHHHH---TCSEEEECCCSSHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHh---cCCeEEEcCCCCccccHHHHHHHHHhC
Confidence 4677888888988887 56899999999973 334555564
No 68
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=47.89 E-value=28 Score=21.07 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=14.0
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
+|.|..|.....+.|+..|...|+.++.
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~ 30 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIW 30 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEE
Confidence 3445555544555555555544554443
No 69
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=47.42 E-value=37 Score=27.70 Aligned_cols=65 Identities=9% Similarity=0.006 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeC----CC----chHHHHHHHhhcCeeeecceee
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPS----DQ----SPHVDLAILSQANHFIGNCISS 98 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l----~~----~~~vDl~Il~~A~~FIGNcvSS 98 (132)
.+++.+.++++ +.++++|-||... ..+++.+.|+ .+.+..- |. ...++++--.++|..||=|-=|
T Consensus 25 ~~~l~~~l~~~-g~~rvliVtd~~~~~~~~~v~~~L~--~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (364)
T 3iv7_A 25 SAFLKQEVERR-GSAKVMVIAGEREMSIAHKVASEIE--VAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGGGS 99 (364)
T ss_dssp HHHHHHHHHHH-TCSSEEEECCGGGHHHHHHHTTTSC--CSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHHHcC--CCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 35677788888 8899999999764 3566667775 3333322 22 3455566667889988765433
No 70
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=47.41 E-value=19 Score=27.13 Aligned_cols=72 Identities=14% Similarity=0.020 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEecC-----CcccHHHHHHhhccCCcEEEeC--CC-chHHHHHHHhhcCeeeecceeecch
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATD-----NNNLNEPLKEAFKRTEIRIVPS--DQ-SPHVDLAILSQANHFIGNCISSFTA 101 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD-----~~~~~~eLk~~l~~~~~~vv~l--~~-~~~vDl~Il~~A~~FIGNcvSSFTa 101 (132)
....+++.++++.+.+-+||-|- .+.++..++++|++.|+++..+ .+ .+.-=...+..||..|=.+-.+|+.
T Consensus 14 ~~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l 93 (206)
T 3l4e_A 14 VVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFL 93 (206)
T ss_dssp CHHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHH
Confidence 34445555444446788899763 2348999999999999876655 22 1111113456677777566666643
No 71
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=47.20 E-value=32 Score=29.83 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=41.7
Q ss_pred ccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-cccHHHHHHhhccCCcEEEeC-CC-chHHHHHHHh
Q psy9357 18 ATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDN-NNLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAILS 86 (132)
Q Consensus 18 lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~-~~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~Il~ 86 (132)
....+.+||+.++.+++. +. ++.-||--|.. .++-++|.++++. -.|-.| .| .-+|+|++-+
T Consensus 283 ~s~~~DYPSv~ql~~~l~----e~-nI~~IFAVt~~~~~~Y~~L~~~ip~--s~vg~L~~dSsNiv~LI~~a 347 (472)
T 3t3p_B 283 ASTTMDYPSLGLMTEKLS----QK-NINLIFAVTENVVNLYQNYSELIPG--TTVGVLSMDSSNVLQLIVDA 347 (472)
T ss_dssp TTTTSCCCCHHHHHHHHH----HT-TCEEEEEECGGGHHHHHHHHHTSTT--CEEEECCTTSTTHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHH----hc-CccEEEEEeccchhHHHHHHHhCCC--ceeeeccccchhHHHHHHHH
Confidence 344789999998887765 44 77899988854 3567888888864 345556 44 4556665533
No 72
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=46.90 E-value=38 Score=29.64 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=45.7
Q ss_pred CcccccccCCccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-cccHHHHHHhhccCCcEEEeC-CC-chHHHH
Q psy9357 6 PQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDN-NNLNEPLKEAFKRTEIRIVPS-DQ-SPHVDL 82 (132)
Q Consensus 6 pqC~g~~~e~~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~-~~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl 82 (132)
-+|+=..+..-.....+.+||+.++.+++.+ . ++.-||--|.. .++-++|.++++. -.|-.| .| .-+|+|
T Consensus 290 g~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~e----n-nI~~IFAVt~~~~~~Y~~L~~~ip~--s~vg~Ls~dSsNiv~L 362 (503)
T 3v4v_B 290 GHCHLDSNGLYSRSTEFDYPSVGQVAQALSA----A-NIQPIFAVTSAALPVYQELSKLIPK--SAVGELSEDSSNVVQL 362 (503)
T ss_dssp SSCCBCTTSBBGGGGGSCCCCHHHHHHHHHH----H-TEEEEEEECSSSHHHHHHHHTTSTT--CEEEECCTTSCTHHHH
T ss_pred CCeEECCCCccccccccCCCCHHHHHHHHHh----c-CCeEEEEEcccchhHHHHHHHhCCC--ceeeEccccchhHHHH
Confidence 3675332111233457899999988877653 3 67889988854 3567788888864 355566 44 455555
Q ss_pred HHH
Q psy9357 83 AIL 85 (132)
Q Consensus 83 ~Il 85 (132)
+.-
T Consensus 363 I~~ 365 (503)
T 3v4v_B 363 IMD 365 (503)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 73
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=46.80 E-value=64 Score=22.66 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=32.8
Q ss_pred HHHHhCCCcEEEEecCCcc-c-HHHHHHhhccCCcEEEeCCCchHHHHHHH
Q psy9357 37 VVREHGQIKYIFVATDNNN-L-NEPLKEAFKRTEIRIVPSDQSPHVDLAIL 85 (132)
Q Consensus 37 ~~~~~~~lk~VfIaTD~~~-~-~~eLk~~l~~~~~~vv~l~~~~~vDl~Il 85 (132)
.+++- +++-|+||.|.++ . ...|..+-...++.++..++...+=.++.
T Consensus 35 ai~~g-ka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G 84 (126)
T 2xzm_U 35 TIEAK-QALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLG 84 (126)
T ss_dssp HHHHT-CCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHT
T ss_pred HHHcC-CceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHC
Confidence 33443 8999999999853 4 45666666667888887666666555544
No 74
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/prote initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii} SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A 2e5x_A*
Probab=46.59 E-value=14 Score=28.07 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=25.8
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.|.+||.|.+-+.|+++.|...+++|+++
T Consensus 2 kiv~aT~N~~K~~E~~~il~~~~i~v~~~ 30 (186)
T 1v7r_A 2 KIFFITSNPGKVREVANFLGTFGIEIVQL 30 (186)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEE
T ss_pred eEEEEcCCHHHHHHHHHHhhhcCcEEEEC
Confidence 47889999999999999998778888875
No 75
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=46.17 E-value=13 Score=29.11 Aligned_cols=86 Identities=7% Similarity=0.031 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEeC---C-C----chHHHHHHHhhcCeee
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVPS---D-Q----SPHVDLAILSQANHFI 92 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~l---~-~----~~~vDl~Il~~A~~FI 92 (132)
.|+ ..+.+.++++.. +.++|.|..|.+. ..+.+++++++.|++|+.. + . .+++..+--..+|++|
T Consensus 112 ~p~---~~~a~~~~~~~~-g~~~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vii 187 (384)
T 3saj_A 112 RPE---LQEALISIIDHY-KWQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVV 187 (384)
T ss_dssp SCC---CHHHHHHHHHHT-TCCEEEEEECSTTCSHHHHHHHHHHHHHTCEEEEEEGGGCCHHHHHHTTTTCCSCSEEEEE
T ss_pred ccc---HHHHHHHHHHHC-CCcEEEEEEeCchhHHHHHHHHHHhhhcCceEEEEEeccCCchhHHHHHHHHhccCCcEEE
Confidence 477 345566667777 8999999986543 4778888888778877642 2 1 2333333345677766
Q ss_pred ecceeecc-hhhhhhhhcCCCCC
Q psy9357 93 GNCISSFT-AFVKRHRDVKGLPS 114 (132)
Q Consensus 93 GNcvSSFT-a~V~reR~~~G~ps 114 (132)
--|...-. .+++.-| ..|+..
T Consensus 188 ~~~~~~~~~~~~~qa~-~~g~~~ 209 (384)
T 3saj_A 188 VDCESERLNAILGQIV-KLEKNG 209 (384)
T ss_dssp EECCGGGHHHHHHHHH-HTCCTT
T ss_pred EEcCHHHHHHHHHHHH-HcCCCC
Confidence 55544333 3444444 456543
No 76
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=46.11 E-value=14 Score=26.51 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
..+++++.++++.. -.+++.||...+.+++.+.|...|+.++..
T Consensus 136 ~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 136 KTFLDTFKRILPEN---GEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp HHHHHHHHHHSCTT---CEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCCC---cEEEEEeCCHHHHHHHHHHHHHCCCeeeec
Confidence 57888888887764 358889998877888888888778877765
No 77
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes}
Probab=46.06 E-value=15 Score=30.17 Aligned_cols=33 Identities=0% Similarity=-0.012 Sum_probs=28.7
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
...-+|+.++|++.|++..+.+ +++.++|++|.
T Consensus 302 ~~~~~e~~e~v~~ri~~a~~~v-~~e~l~lsPdC 334 (375)
T 1ypx_A 302 KTGELEDEAAIKARIEEASEIV-PLSQLRLSPQC 334 (375)
T ss_dssp SSCC-CCSHHHHHHHHHHHHHS-CGGGEEEEESS
T ss_pred cCCCCCCHHHHHHHHHHHHHhc-CccceEecCCC
Confidence 3456999999999999999999 89999999984
No 78
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=46.06 E-value=40 Score=30.32 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=38.4
Q ss_pred ccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCC-cccHHHHHHhhccCCcEEEeC-CC-chHHHHHH
Q psy9357 18 ATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDN-NNLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAI 84 (132)
Q Consensus 18 lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~-~~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~I 84 (132)
....+.+||+.++++++. +. ++.-||..|.. .+.-++|.+.+.. -.|..| .| .-.|+++.
T Consensus 283 ~s~~~DypSi~ql~~~l~----~~-~i~~ifavt~~~~~~y~~l~~~i~~--s~v~~l~~dSsni~~li~ 345 (690)
T 3fcs_B 283 ASTTMDYPSLGLMTEKLS----QK-NINLIFAVTENVVNLYQNYSELIPG--TTVGVLSMDSSNVLQLIV 345 (690)
T ss_dssp GGGTSCCCCHHHHHHHHH----HT-TCEEEEEEEGGGHHHHHHHHHHSTT--CEEEEECTTCTTHHHHHH
T ss_pred cccccCCCCHHHHHHHHH----Hc-CCeEEEEEeCCchhhHHHHHhhcCC--ceeeeeccccHHHHHHHH
Confidence 345689999998887765 43 77889988854 3456778877754 233344 33 33444444
No 79
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=45.95 E-value=12 Score=28.64 Aligned_cols=88 Identities=10% Similarity=-0.060 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHH----HHHhhccCCcEEEe---C--CC-chHHHHHHHhhcCeeeec
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEP----LKEAFKRTEIRIVP---S--DQ-SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~e----Lk~~l~~~~~~vv~---l--~~-~~~vDl~Il~~A~~FIGN 94 (132)
++.++-++.+-+.+.+. +.|+++|..+++.|=.. +++.+++.|.+|+. + ++ ...+-....+.+|..+--
T Consensus 106 ~~~~~~~~~~a~~~~~~-g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~~~~~~~~~~~~~~~dai~~~ 184 (327)
T 3ckm_A 106 LSPEDEAESAANKMWND-GVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAV 184 (327)
T ss_dssp CCHHHHHHHHHHHHHHT-TCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSCTTCCEEEEC
T ss_pred cChHHHHHHHHHHHHhc-CCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCCchhhHHHHHhccCCcEEEEE
Confidence 45566667777777776 89999999976665444 45555544544443 2 22 333333344445544433
Q ss_pred ceeecchhhhhhhhcCCCC
Q psy9357 95 CISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 95 cvSSFTa~V~reR~~~G~p 113 (132)
.-..-.+.+.+.-...|..
T Consensus 185 ~~~~~~~~i~~q~~~~g~~ 203 (327)
T 3ckm_A 185 ASPTELAEMKGYLTNIVPN 203 (327)
T ss_dssp CCHHHHHHHHHHHTTTCTT
T ss_pred cCHHHHHHHHHHHHhhhcc
Confidence 3344444444444445544
No 80
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=45.71 E-value=16 Score=30.02 Aligned_cols=61 Identities=10% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc-----cHHHHHHhhccCCcEEEeC------CC----chHHHHHHHhhcCeeeec
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN-----LNEPLKEAFKRTEIRIVPS------DQ----SPHVDLAILSQANHFIGN 94 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~-----~~~eLk~~l~~~~~~vv~l------~~----~~~vDl~Il~~A~~FIGN 94 (132)
.++++.+.++ . + ++++|-||... +.+++.+.|+ +++++.+ |. ...++.+.-..+|..||=
T Consensus 39 ~l~~l~~~l~-~-g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 113 (408)
T 1oj7_A 39 AIAGLREQIP-H-D-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAV 113 (408)
T ss_dssp GGGGHHHHSC-T-T-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHh-c-C-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3445555555 5 6 89999997542 6788999996 6665544 22 345566666788999865
Q ss_pred c
Q psy9357 95 C 95 (132)
Q Consensus 95 c 95 (132)
|
T Consensus 114 G 114 (408)
T 1oj7_A 114 G 114 (408)
T ss_dssp E
T ss_pred C
Confidence 4
No 81
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=45.12 E-value=97 Score=24.36 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=22.0
Q ss_pred HHHHHhhcCeeeecceeecchhhhhhhhcCCCCC-CcccCC
Q psy9357 81 DLAILSQANHFIGNCISSFTAFVKRHRDVKGLPS-SFWAFP 120 (132)
Q Consensus 81 Dl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps-~F~g~~ 120 (132)
=.+++++||.||||- |+-+.- =-+.|.|+ .+||-.
T Consensus 255 ~~ali~~a~~~i~~D----sG~~Hl-Aaa~g~P~v~lfg~t 290 (349)
T 3tov_A 255 LAAAMNRCNLLITND----SGPMHV-GISQGVPIVALYGPS 290 (349)
T ss_dssp HHHHHHTCSEEEEES----SHHHHH-HHTTTCCEEEECSSC
T ss_pred HHHHHHhCCEEEECC----CCHHHH-HHhcCCCEEEEECCC
Confidence 457899999999985 122222 34667775 555544
No 82
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=44.90 E-value=83 Score=23.86 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecC-CcccHHHHHHhhccCCcEEEeCCCchHHH-HHHHhhcCeeeecceeecchhh
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATD-NNNLNEPLKEAFKRTEIRIVPSDQSPHVD-LAILSQANHFIGNCISSFTAFV 103 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD-~~~~~~eLk~~l~~~~~~vv~l~~~~~vD-l~Il~~A~~FIGNcvSSFTa~V 103 (132)
.++.+++.++.+.++.++++ +.+..+ .....++|++.....+ +|+-+......| ..+++.||+||+.. .-+
T Consensus 213 ~~~~ll~a~~~l~~~~~~~~-lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~~ad~~v~~S-----~g~ 285 (376)
T 1v4v_A 213 LLSDLAQALKRVAEAFPHLT-FVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMRASLLLVTDS-----GGL 285 (376)
T ss_dssp GHHHHHHHHHHHHHHCTTSE-EEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHTEEEEEESC-----HHH
T ss_pred HHHHHHHHHHHHHhhCCCeE-EEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHHhCcEEEECC-----cCH
Confidence 46778888877766654554 334444 4335566766654211 222223222334 25789999999874 223
Q ss_pred hhhhhcCCCCC
Q psy9357 104 KRHRDVKGLPS 114 (132)
Q Consensus 104 ~reR~~~G~ps 114 (132)
.-|=.+.|.|.
T Consensus 286 ~lEA~a~G~Pv 296 (376)
T 1v4v_A 286 QEEGAALGVPV 296 (376)
T ss_dssp HHHHHHTTCCE
T ss_pred HHHHHHcCCCE
Confidence 66788999994
No 83
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=44.84 E-value=61 Score=26.57 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=56.7
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc---cHHHHHHhhccCCcEEEe---CCC-------chHH-HHHHHh
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNN---LNEPLKEAFKRTEIRIVP---SDQ-------SPHV-DLAILS 86 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~---~~~eLk~~l~~~~~~vv~---l~~-------~~~v-Dl~Il~ 86 (132)
+-.|+.....+.+-++++.. +-+.|.|.. |.+. .++.|++.+++.|+.|+. ++. .+++ .++-.+
T Consensus 164 r~~psd~~~~~a~~~ll~~f-gw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s 242 (479)
T 3sm9_A 164 RTVPPDFYQAKAMAEILRFF-NWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKP 242 (479)
T ss_dssp ESSCCTHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCT
T ss_pred EeCCcHHHHHHHHHHHHHHC-CCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcC
Confidence 34577777777788888887 889998877 4432 578888999888877653 232 2333 222236
Q ss_pred hcCeeeecceeecchhhhhhhhcCCCC
Q psy9357 87 QANHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 87 ~A~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
.||+.|--|-..-...+.++-...|+.
T Consensus 243 ~a~vIi~~~~~~~~~~l~~~~~~~g~~ 269 (479)
T 3sm9_A 243 NARVVVLFMRSDDSRELIAAASRANAS 269 (479)
T ss_dssp TCCEEEEECCHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHhCCE
Confidence 789988666544333333333344553
No 84
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=44.25 E-value=43 Score=25.11 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
++..+-+.+... +++.|+|+||. ++++++++..+++++.
T Consensus 29 li~~~l~~l~~~-~~~~ivVv~~~----~~i~~~~~~~g~~v~~ 67 (252)
T 3oam_A 29 MIQWVYEQAMQA-GADRVIIATDD----ERVEQAVQAFGGVVCM 67 (252)
T ss_dssp HHHHHHHHHHHT-TCSEEEEEESC----HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhC-CCCeEEEECCH----HHHHHHHHHcCCEEEE
Confidence 444444555555 68999999974 5566666655666654
No 85
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=44.05 E-value=42 Score=25.80 Aligned_cols=39 Identities=8% Similarity=0.182 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
++..+-+.+... +++.|+|+||. ++++++++..|++++.
T Consensus 36 li~~~l~~l~~~-~i~~VvVvt~~----~~i~~~~~~~g~~v~~ 74 (256)
T 3tqd_A 36 MIQHVYESAIKS-GAEEVVIATDD----KRIRQVAEDFGAVVCM 74 (256)
T ss_dssp HHHHHHHHHHHT-TCSEEEEEESC----HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhC-CCCEEEEECCH----HHHHHHHHHcCCeEEE
Confidence 334443444445 68999999974 4555555555666553
No 86
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=43.66 E-value=33 Score=21.35 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=11.2
Q ss_pred EEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
|.|..|.....+.|+..|...++.++
T Consensus 4 ilivdd~~~~~~~l~~~L~~~~~~v~ 29 (124)
T 1mb3_A 4 VLIVEDNELNMKLFHDLLEAQGYETL 29 (124)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHcCcEEE
Confidence 44444444444444444444344333
No 87
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=43.65 E-value=14 Score=31.19 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEE--eC---CCchHHHHHHHh---hcCeeeecc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIV--PS---DQSPHVDLAILS---QANHFIGNC 95 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv--~l---~~~~~vDl~Il~---~A~~FIGNc 95 (132)
..++++.+.++++ +.++++|-||... +.+++.+.|+..+++++ .. +....|+.++-. ++|..||=|
T Consensus 77 g~l~~l~~~l~~~-g~~rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~~~D~IIAvG 153 (450)
T 1ta9_A 77 HAFTRSYMYVKKW-ATKSAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPDDTQVIIGVG 153 (450)
T ss_dssp TGGGGHHHHHTTT-CSSEEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCTTCCEEEEEE
T ss_pred CHHHHHHHHHHhc-CCCEEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhhCCCEEEEeC
Confidence 4456677777776 6669999998653 68999999987777652 23 334445544332 778888554
No 88
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=42.92 E-value=32 Score=27.06 Aligned_cols=76 Identities=9% Similarity=0.118 Sum_probs=48.4
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHhCCCcEEEEec----CCcccHHHHHHhhccCCcEEE-eC--CCchHHHHHHHhhc
Q psy9357 16 GVATEELCFPSVETVVRQLKRVVREHGQIKYIFVAT----DNNNLNEPLKEAFKRTEIRIV-PS--DQSPHVDLAILSQA 88 (132)
Q Consensus 16 ~~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT----D~~~~~~eLk~~l~~~~~~vv-~l--~~~~~vDl~Il~~A 88 (132)
+.++...|.|++++|+......-+-+ +.+-||+-+ .+.+++.++++.+. +..+. -. .+..++..+. ..|
T Consensus 133 ~~v~~a~~~~~~e~iaa~A~~a~~~~-g~~~vY~e~sG~~g~~~~v~~ir~~~~--~~pv~vGfGI~~~e~a~~~~-~gA 208 (235)
T 3w01_A 133 AKHTKANTDLTTEDLEAYAQMVNHMY-RLPVMYIEYSGIYGDVSKVQAVSEHLT--ETQLFYGGGISSEQQATEMA-AIA 208 (235)
T ss_dssp HHHTTBCCCCCHHHHHHHHHHHHHTT-CCSEEEEECTTSCCCHHHHHHHHTTCS--SSEEEEESCCCSHHHHHHHH-TTS
T ss_pred hhcccCCcCCCHHHHHHHHHHHHHHc-CCCEEEEecCCCcCCHHHHHHHHHhcC--CCCEEEECCcCCHHHHHHHH-cCC
Confidence 46788899999999888876655666 899999944 23345677666652 23333 33 4545554443 468
Q ss_pred Cee-eecc
Q psy9357 89 NHF-IGNC 95 (132)
Q Consensus 89 ~~F-IGNc 95 (132)
|-. ||+.
T Consensus 209 D~VVVGSa 216 (235)
T 3w01_A 209 DTIIVGDI 216 (235)
T ss_dssp SEEEECTH
T ss_pred CEEEECCc
Confidence 755 4554
No 89
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=41.65 E-value=44 Score=21.40 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
....+.++..+++. +.+ |..++|..
T Consensus 16 ~~~~~~l~~~l~~~-g~~-v~~~~~~~ 40 (140)
T 3grc_A 16 PDIARLLNLMLEKG-GFD-SDMVHSAA 40 (140)
T ss_dssp HHHHHHHHHHHHHT-TCE-EEEECSHH
T ss_pred HHHHHHHHHHHHHC-CCe-EEEECCHH
Confidence 34445555555554 443 44444443
No 90
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=41.00 E-value=36 Score=26.41 Aligned_cols=84 Identities=11% Similarity=0.090 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEe--C-C--------C-chHHHHHHHhhc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVP--S-D--------Q-SPHVDLAILSQA 88 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~--l-~--------~-~~~vDl~Il~~A 88 (132)
.|+ ..+.+.++++.. +.++|.|..|.+. .++.++++|++.|++|+. . + + .+++..+--..+
T Consensus 105 ~p~---~~~a~~~~~~~~-gw~~vaii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~ 180 (376)
T 3hsy_A 105 RPD---LKGALLSLIEYY-QWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKE 180 (376)
T ss_dssp SCC---CHHHHHHHHHHT-TCCEEEEEECSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------
T ss_pred Ccc---HHHHHHHHHHhc-CCCEEEEEEeCchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCC
Confidence 477 445566667777 8999999887544 477888888877877763 1 2 1 455666666778
Q ss_pred Ceeeecceeecch-hhhhhhhcCCC
Q psy9357 89 NHFIGNCISSFTA-FVKRHRDVKGL 112 (132)
Q Consensus 89 ~~FIGNcvSSFTa-~V~reR~~~G~ 112 (132)
|++|-.|...-.. +++.-|+ +|+
T Consensus 181 ~vii~~~~~~~~~~~~~qa~~-~g~ 204 (376)
T 3hsy_A 181 RRVILDCERDKVNDIVDQVIT-IGK 204 (376)
T ss_dssp CEEEEESCHHHHHHHHHHHHH-HTS
T ss_pred eEEEEECCHHHHHHHHHHHHH-ccc
Confidence 8777655444333 4444443 454
No 91
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=40.63 E-value=19 Score=28.13 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=23.9
Q ss_pred CcEEEEecCCcccHHHHHHhhccCCcEEEeC-CCchHHHHHH
Q psy9357 44 IKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAI 84 (132)
Q Consensus 44 lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~I 84 (132)
-.-+||.+|...+-+|-.+.|++.+...|++ |..-+-|+.|
T Consensus 153 ~~~~FvLgDH~g~~~eee~~L~~~~~~~iSlGP~~l~A~hcI 194 (208)
T 2qwv_A 153 PNPCFILTDHIPMPKKSGNSMKRLGVEKISLGPKMLFASQCV 194 (208)
T ss_dssp SSEEEEECC----------CTTTTTCEEEECCSSCCCHHHHH
T ss_pred CCCEEEEcCCCCCCHHHHHHHHhcCCeEEEeCchHHHHHHHH
Confidence 4788999999999888889998878889999 6655555554
No 92
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=40.31 E-value=43 Score=21.03 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=11.8
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
+|.|..|.....+.|+..|...|+.|.
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~ 31 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEMLGFQAD 31 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTEEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCEE
Confidence 344444444444444444444444333
No 93
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=40.15 E-value=56 Score=21.13 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=27.5
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeCCC-chHHHHHHHhhcCeeee
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPSDQ-SPHVDLAILSQANHFIG 93 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~-~~~vDl~Il~~A~~FIG 93 (132)
+|.|..|.......|+..|...++.|....+ ...++++--.+.|..|-
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvll 54 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIIL 54 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 5667777666777777777665666554332 34444444444555543
No 94
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=40.01 E-value=39 Score=29.21 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=41.9
Q ss_pred ccccccCCCHHHHHHHHHHHHHHhCCCcEEEEecC-CcccHHHHHHhhccCCcEEEeC-CC-chHHHHHHH
Q psy9357 18 ATEELCFPSVETVVRQLKRVVREHGQIKYIFVATD-NNNLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAIL 85 (132)
Q Consensus 18 lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD-~~~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~Il 85 (132)
....+.+||+.++++++. +. ++.-||--|. ..++-++|.++++. -.|-.| .| .-+|+|++-
T Consensus 290 ~s~~~DYPSv~ql~~~l~----e~-nI~~IFAVt~~~~~~Y~~L~~~ip~--s~vg~Ls~dSsNiv~LI~~ 353 (454)
T 3vi3_B 290 MSHYYDYPSIAHLVQKLS----EN-NIQTIFAVTEEFQPVYKELKNLIPK--SAVGTLSANSSNVIQLIID 353 (454)
T ss_dssp CTTTSCCCCHHHHHHHHH----HT-TEEEEEEEEGGGHHHHHHHHHHSTT--EEEEEECTTCTTHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHH----hc-CCcEEEEEcCccchHHHHHHHhCCC--ceeeEccccchhHHHHHHH
Confidence 345689999998877654 44 7899998885 44567889888864 345556 44 445555553
No 95
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=39.94 E-value=48 Score=21.16 Aligned_cols=50 Identities=6% Similarity=0.049 Sum_probs=30.1
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeCCC-chHHHHHHHhhcCeee
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQ-SPHVDLAILSQANHFI 92 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~-~~~vDl~Il~~A~~FI 92 (132)
+-.+|.|..|.....+.|+..|...|+.|....+ ...++++--...|..|
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi 67 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM 67 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE
Confidence 3456777777777777777777766776664433 3444444344456665
No 96
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=39.14 E-value=58 Score=20.09 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
+...++..++.. +.+.+..+++.
T Consensus 14 ~~~~l~~~l~~~-g~~vv~~~~~~ 36 (120)
T 1tmy_A 14 MRMMLKDIITKA-GYEVAGEATNG 36 (120)
T ss_dssp HHHHHHHHHHHT-TCEEEEEESSH
T ss_pred HHHHHHHHHhhc-CcEEEEEECCH
Confidence 334444444443 44334344443
No 97
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=39.07 E-value=54 Score=25.95 Aligned_cols=74 Identities=8% Similarity=-0.029 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcc--cHHHHHHhhccCCcEEEeCC----CchHHHHH-------HHhhcC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVAT-DNNN--LNEPLKEAFKRTEIRIVPSD----QSPHVDLA-------ILSQAN 89 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~--~~~eLk~~l~~~~~~vv~l~----~~~~vDl~-------Il~~A~ 89 (132)
.....+++++|++.+++. ++|||.. ++-. .+.+||+.|++.|.++.-.+ ..+.=+.- +-.-.+
T Consensus 5 ~e~K~~~v~el~~~l~~~---~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~ 81 (284)
T 3a1y_G 5 AEWKKKEVEELAKLIKSY---PVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE 81 (284)
T ss_dssp CCCTTTHHHHHHHHHTTC---SEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred HHHHHHHHHHHHHHHHhC---CEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence 345678899999999865 8999998 6543 79999999997665443321 12222221 344568
Q ss_pred eeeecceeecc
Q psy9357 90 HFIGNCISSFT 100 (132)
Q Consensus 90 ~FIGNcvSSFT 100 (132)
+|-||+.=-||
T Consensus 82 ~l~G~~al~Ft 92 (284)
T 3a1y_G 82 YIDRGAGILVT 92 (284)
T ss_dssp CCCTTEEEEEE
T ss_pred hcCCCEEEEEE
Confidence 99999877787
No 98
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=39.05 E-value=1.2e+02 Score=22.79 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=57.6
Q ss_pred cCCCHHHHHHHHHHHH-HHhCCCcEEEEec--CCcc---cHHHHHHhhccCCcEEEe--C----CC-chHHHHHHHhhcC
Q psy9357 23 CFPSVETVVRQLKRVV-REHGQIKYIFVAT--DNNN---LNEPLKEAFKRTEIRIVP--S----DQ-SPHVDLAILSQAN 89 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~-~~~~~lk~VfIaT--D~~~---~~~eLk~~l~~~~~~vv~--l----~~-~~~vDl~Il~~A~ 89 (132)
-.|+.....+.+-+++ +.. +.++|.|.. |.+. ..+.++++|++.|++++. + .+ .+++..+.-..+|
T Consensus 128 ~~~~~~~~~~~~~~~l~~~~-g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d 206 (366)
T 3td9_A 128 VCFIDPFQGAAMAVFAYKNL-GAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPD 206 (366)
T ss_dssp SSCCHHHHHHHHHHHHHHTS-CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCS
T ss_pred EeCCcHHHHHHHHHHHHHhc-CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCC
Confidence 4577777777777777 445 888988875 3322 356678888888877653 2 22 5777777778888
Q ss_pred eeeecce-eecchhhhhhhhcCCCCCCccc
Q psy9357 90 HFIGNCI-SSFTAFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 90 ~FIGNcv-SSFTa~V~reR~~~G~ps~F~g 118 (132)
..+-.+. .....+++..|+ .|+...+.|
T Consensus 207 ~v~~~~~~~~a~~~~~~~~~-~g~~~~~~~ 235 (366)
T 3td9_A 207 AIYITGYYPEIALISRQARQ-LGFTGYILA 235 (366)
T ss_dssp EEEECSCHHHHHHHHHHHHH-TTCCSEEEE
T ss_pred EEEEccchhHHHHHHHHHHH-cCCCceEEe
Confidence 7765222 233344554443 455433443
No 99
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=38.95 E-value=47 Score=20.92 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
.+...++..++.. +.. |..++|..
T Consensus 13 ~~~~~l~~~L~~~-g~~-v~~~~~~~ 36 (120)
T 3f6p_A 13 PIADILEFNLRKE-GYE-VHCAHDGN 36 (120)
T ss_dssp HHHHHHHHHHHHT-TCE-EEEESSHH
T ss_pred HHHHHHHHHHHhC-CEE-EEEeCCHH
Confidence 4445555555554 443 44444443
No 100
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=38.76 E-value=40 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=11.0
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~v 71 (132)
+|.|..|.......|+..|.+.++.|
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~g~~v 33 (132)
T 3lte_A 8 RILVVDDDQAMAAAIERVLKRDHWQV 33 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCHHHHHHHHHHHHHCCcEE
Confidence 34444444444444444444433433
No 101
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=37.80 E-value=26 Score=25.47 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=28.0
Q ss_pred CCCcEEEEecCCccc--HHHHHHhhccCCcEEEeCCCchHHHHHHHh
Q psy9357 42 GQIKYIFVATDNNNL--NEPLKEAFKRTEIRIVPSDQSPHVDLAILS 86 (132)
Q Consensus 42 ~~lk~VfIaTD~~~~--~~eLk~~l~~~~~~vv~l~~~~~vDl~Il~ 86 (132)
++++-|+||.|.++. ...|..+-...++.++..++...+=.++..
T Consensus 65 gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk 111 (144)
T 2jnb_A 65 GISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGV 111 (144)
T ss_dssp TCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCC
Confidence 388999999998862 444444444456766655555555555444
No 102
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=37.51 E-value=20 Score=29.44 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=28.1
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
-+|+.++|++.|++.++.+ +.+.++|++|..
T Consensus 296 ~ve~~eev~~ri~~a~~~v-~~~~l~lsPdCG 326 (357)
T 3rpd_A 296 TIETAEEVADTLRKALKFV-DADKLYPCTNCG 326 (357)
T ss_dssp SCCCHHHHHHHHHHHHTTS-CGGGEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHHhC-CcccEEEeCCCC
Confidence 4799999999999999998 899999999854
No 103
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=37.43 E-value=1.1e+02 Score=25.48 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=8.7
Q ss_pred hhcCeeeecce
Q psy9357 86 SQANHFIGNCI 96 (132)
Q Consensus 86 ~~A~~FIGNcv 96 (132)
.++|.+|||.-
T Consensus 384 ~~pDl~ig~~~ 394 (458)
T 1mio_B 384 EGVDLLISNTY 394 (458)
T ss_dssp SCCSEEEESGG
T ss_pred cCCCEEEeCcc
Confidence 37899999963
No 104
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=37.33 E-value=48 Score=20.68 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q psy9357 30 VVRQLKRVVREH 41 (132)
Q Consensus 30 I~~~ik~~~~~~ 41 (132)
+...++..++..
T Consensus 15 ~~~~l~~~l~~~ 26 (124)
T 1srr_A 15 IRILLNEVFNKE 26 (124)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC
Confidence 344444444443
No 105
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=37.25 E-value=33 Score=27.90 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCCc-EEEe--C------C---CchHHHHHHHhhcC
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTEI-RIVP--S------D---QSPHVDLAILSQAN 89 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~~-~vv~--l------~---~~~~vDl~Il~~A~ 89 (132)
+...+++.+|++.+.++ ++|||.. ++- ..+.+||+.|+..+. .|++ + . +.+.+ -.-.+
T Consensus 6 e~K~~~v~el~e~l~~~---~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~l----e~L~~ 78 (312)
T 3u5i_q 6 EKKAEYFAKLREYLEEY---KSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDF----EKLLP 78 (312)
T ss_dssp HHHHHHHHHHHHHHHHC---SEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGG----GGTGG
T ss_pred HHHHHHHHHHHHHHHhC---CEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccCh----HHHHH
Confidence 35678999999999987 8999998 644 379999999987553 3333 1 1 01222 23458
Q ss_pred eeeecceeecc
Q psy9357 90 HFIGNCISSFT 100 (132)
Q Consensus 90 ~FIGNcvSSFT 100 (132)
++-||+.=-||
T Consensus 79 ~L~G~~gl~Ft 89 (312)
T 3u5i_q 79 FVKGNVGFVFT 89 (312)
T ss_dssp GCCSSEEEEEE
T ss_pred hccCCEEEEEE
Confidence 89999887787
No 106
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=37.20 E-value=1.3e+02 Score=23.24 Aligned_cols=88 Identities=13% Similarity=0.225 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHhC--CCcEEEEec-CC-cccHHHHHHhhccCCc--EEEeCCCchHHH-HHHHhhcCeeeecceee
Q psy9357 26 SVETVVRQLKRVVREHG--QIKYIFVAT-DN-NNLNEPLKEAFKRTEI--RIVPSDQSPHVD-LAILSQANHFIGNCISS 98 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~--~lk~VfIaT-D~-~~~~~eLk~~l~~~~~--~vv~l~~~~~vD-l~Il~~A~~FIGNcvSS 98 (132)
.++.+++.++.+.++.+ +++-+++.. +. ....++|++..++.+. .|.-+...+.-| ..+++.||+||-...+-
T Consensus 257 g~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e 336 (438)
T 3c48_A 257 GPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNE 336 (438)
T ss_dssp CHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCC
T ss_pred CHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECcccc
Confidence 45677777777776643 344444433 11 2455667766665443 233333332223 25778999999654321
Q ss_pred cchhhhhhhhcCCCC
Q psy9357 99 FTAFVKRHRDVKGLP 113 (132)
Q Consensus 99 FTa~V~reR~~~G~p 113 (132)
=...+.-|=+..|.|
T Consensus 337 ~~~~~~~Eama~G~P 351 (438)
T 3c48_A 337 SFGLVAMEAQASGTP 351 (438)
T ss_dssp SSCHHHHHHHHTTCC
T ss_pred CCchHHHHHHHcCCC
Confidence 123456666788887
No 107
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=36.87 E-value=91 Score=21.77 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEeC-CCchHHHHHHHh
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVPS-DQSPHVDLAILS 86 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~ 86 (132)
+++.+.+++- .++-|+||+|.++. ..+|..+=...++.|..+ .+...+-.++..
T Consensus 33 ~~v~kaIr~g-kakLVIiA~Das~~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk 88 (125)
T 3vi6_A 33 KQTLKMIRQG-KAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGK 88 (125)
T ss_dssp HHHHHHHHTT-CCSEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTC
T ss_pred HHHHHHHHcC-CceEEEEeCCCCHHHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCC
Confidence 3455556664 89999999998863 444443211123444434 445555555544
No 108
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=36.74 E-value=32 Score=25.37 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=24.9
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|.|++|.. +.-++|+++|++.|++|+-+
T Consensus 3 kIaigsDhaG~~lK~~i~~~L~~~G~eV~D~ 33 (149)
T 2vvr_A 3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDK 33 (149)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEeCchhHHHHHHHHHHHHHCCCEEEEe
Confidence 489999976 56888999999889999876
No 109
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=36.68 E-value=25 Score=25.11 Aligned_cols=50 Identities=10% Similarity=0.199 Sum_probs=25.7
Q ss_pred EEEecCCcccHHHHHHhhcc-CCcEEEeC--CCchHHHHHHHhhcCeeeeccee
Q psy9357 47 IFVATDNNNLNEPLKEAFKR-TEIRIVPS--DQSPHVDLAILSQANHFIGNCIS 97 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~-~~~~vv~l--~~~~~vDl~Il~~A~~FIGNcvS 97 (132)
||.+++-...+++|-+.|.+ .|++|.-. .....+.++. +.+|+|++.-..
T Consensus 5 v~~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~s~~l~~~l~-~~~Dv~~~~~~~ 57 (237)
T 2hxw_A 5 LYGPGGPHTALKDIANKYSEKTGVKVNVNFGPQATWFEKAK-KDADILFGASDQ 57 (237)
T ss_dssp EEECSSTHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHH-HHCSEEEESSHH
T ss_pred EEeccchHHHHHHHHHHHHHHhCceEEEEeCChHHHHHHhc-cCCCEEEeCCHH
Confidence 44444444455666666643 25544432 2234444444 777777766533
No 110
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=36.55 E-value=1.2e+02 Score=22.63 Aligned_cols=96 Identities=8% Similarity=0.019 Sum_probs=59.9
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHHHHHhhcC
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQAN 89 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~A~ 89 (132)
...|+-....+.+-+.+.+. +.++|.+.++.+. ..+.++++|++.|++++. . .+ .+.+..+.-..+|
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d 196 (358)
T 3hut_A 118 RAITTPAFEGPNNAAWMIGD-GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQ 196 (358)
T ss_dssp ESSCCGGGHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCS
T ss_pred EecCChHHHHHHHHHHHHHc-CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCC
Confidence 34577777777777777776 8888888773333 356677788887887653 2 12 5667776667777
Q ss_pred eeeeccee-ecchhhhhhhhcCCCCCCcccC
Q psy9357 90 HFIGNCIS-SFTAFVKRHRDVKGLPSSFWAF 119 (132)
Q Consensus 90 ~FIGNcvS-SFTa~V~reR~~~G~ps~F~g~ 119 (132)
..+-.+-. ....+++..|+ .|+...+.|.
T Consensus 197 ~i~~~~~~~~a~~~~~~~~~-~g~~~p~~~~ 226 (358)
T 3hut_A 197 AIYLAMAYEDAAPFLRALRA-RGSALPVYGS 226 (358)
T ss_dssp EEEEESCHHHHHHHHHHHHH-TTCCCCEEEC
T ss_pred EEEEccCchHHHHHHHHHHH-cCCCCcEEec
Confidence 66544333 44455555554 4554444444
No 111
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=36.50 E-value=69 Score=20.14 Aligned_cols=32 Identities=6% Similarity=0.216 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcccHHHHH
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNNLNEPLK 61 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk 61 (132)
...+.++..+++. +...+..+++....++.++
T Consensus 12 ~~~~~l~~~L~~~-g~~v~~~~~~~~~a~~~~~ 43 (134)
T 3f6c_A 12 LAIAAIRNLLIKN-DIEILAELTEGGSAVQRVE 43 (134)
T ss_dssp HHHHHHHHHHHHT-TEEEEEEESSSTTHHHHHH
T ss_pred HHHHHHHHHHhhC-CcEEEEEcCCHHHHHHHHH
Confidence 4455566666665 5444435555555444443
No 112
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=36.43 E-value=49 Score=21.34 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=27.3
Q ss_pred cEEEEecCCcccHHHHHHhhccCCcEEEeCCC-chHHHHHHHhhcCeee
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQ-SPHVDLAILSQANHFI 92 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~-~~~vDl~Il~~A~~FI 92 (132)
.+|.|..|.....+.|+..|...|+.|+...+ ...++.+--.+.|..|
T Consensus 9 ~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii 57 (147)
T 2zay_A 9 WRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLII 57 (147)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEE
Confidence 45677777777777777777766666664432 3333333333444444
No 113
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=36.32 E-value=75 Score=24.17 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCC-cEEEe--CCCchHHHH-------HHHhhcCeeee
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTE-IRIVP--SDQSPHVDL-------AILSQANHFIG 93 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~-~~vv~--l~~~~~vDl-------~Il~~A~~FIG 93 (132)
..+++.+|++.+.++ .++||+. ++- ..+.+|++.|+..+ +.|++ +-..|.=+. -+-.-++++-|
T Consensus 5 K~~~v~el~e~l~~~---~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G 81 (213)
T 3jsy_A 5 KIEEVKTLKGLIKSK---PVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER 81 (213)
T ss_dssp HHHHHHHHHHHHHHS---SEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred HHHHHHHHHHHHHhC---CEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence 457899999999987 8999998 654 37999999998643 23332 100111111 13345689999
Q ss_pred cceeecc
Q psy9357 94 NCISSFT 100 (132)
Q Consensus 94 NcvSSFT 100 (132)
|+.=-||
T Consensus 82 ~~~l~Ft 88 (213)
T 3jsy_A 82 GAAILVT 88 (213)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9988888
No 114
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanocaldococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
Probab=36.24 E-value=18 Score=27.65 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=25.5
Q ss_pred EEEEecCCcccHHHHHHhhccCC-cEEEeC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTE-IRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~-~~vv~l 74 (132)
.|++||.|.+-+.|+++.|...+ ++|+++
T Consensus 10 ~iv~aT~N~~K~~E~~~iL~~~~~i~v~~~ 39 (193)
T 1b78_A 10 KIYFATGNPNKIKEANIILKDLKDVEIEQI 39 (193)
T ss_dssp CEEEECSCHHHHHHHHHHTTTCTTCCEEEE
T ss_pred EEEEEcCCHHHHHHHHHHhcccCCeEEEEC
Confidence 48899999999999999998765 888875
No 115
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=36.03 E-value=36 Score=24.68 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+.+++.+.++++.. -.+++.||+..+.+.+.+.|...++..+..
T Consensus 133 ~~~l~~~~~~Lkpg---G~l~~~td~~~~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 133 SHFLKKYEEVMGKG---GSIHFKTDNRGLFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp HHHHHHHHHHHTTS---CEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCCC---CEEEEEeCCHHHHHHHHHHHHHCCCccccc
Confidence 67788888887754 467888888777777777776656655544
No 116
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=35.87 E-value=51 Score=20.19 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=9.3
Q ss_pred EEEecCCcccHHHHHHhhccCCcE
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTEIR 70 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~~~ 70 (132)
|.|..|.....+.|+..|...|+.
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~ 27 (120)
T 2a9o_A 4 ILIVDDEKPISDIIKFNMTKEGYE 27 (120)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCE
T ss_pred EEEEcCCHHHHHHHHHHHHhcCcE
Confidence 333333333333444444333333
No 117
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=35.82 E-value=49 Score=20.94 Aligned_cols=12 Identities=17% Similarity=0.240 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q psy9357 30 VVRQLKRVVREH 41 (132)
Q Consensus 30 I~~~ik~~~~~~ 41 (132)
+...++..+...
T Consensus 15 ~~~~l~~~L~~~ 26 (136)
T 1mvo_A 15 IVTLLQYNLERS 26 (136)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 334444444443
No 118
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=35.70 E-value=40 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=12.4
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
+|.|..|.......|+..|...|+.++
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~ 33 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVD 33 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEE
Confidence 344444444444445555544444443
No 119
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=35.63 E-value=12 Score=30.34 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC---CCchHHHHHHHh---hcCeeeecc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS---DQSPHVDLAILS---QANHFIGNC 95 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l---~~~~~vDl~Il~---~A~~FIGNc 95 (132)
.++++.+.++++ + ++++|-||..- +.+++.+.|+..++.++.. |....|+.++-. ++|..||=|
T Consensus 29 ~l~~l~~~l~~~-g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~~~~d~IIavG 102 (376)
T 1kq3_A 29 AINILEEELSRF-G-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEEETDVVVGIG 102 (376)
T ss_dssp GGGGHHHHHHTT-C-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCCTTCCEEEEEE
T ss_pred HHHHHHHHHHHc-C-CeEEEEECccHHhhccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHhcCCCEEEEeC
Confidence 345666677777 7 99999999653 2677888887666555444 334444443322 778888543
No 120
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=35.60 E-value=35 Score=21.75 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=12.5
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
+|.|..|.......|+..|...++.|.
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~ 31 (140)
T 2qr3_A 5 TIIIVDDNKGVLTAVQLLLKNHFSKVI 31 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTSSEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCcEEE
Confidence 344444444444445555544444443
No 121
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=35.51 E-value=33 Score=23.87 Aligned_cols=42 Identities=5% Similarity=0.059 Sum_probs=30.9
Q ss_pred cHHHHHHhhccCCcEEEeCC-CchHHHHHHHhhcCeeeeccee
Q psy9357 56 LNEPLKEAFKRTEIRIVPSD-QSPHVDLAILSQANHFIGNCIS 97 (132)
Q Consensus 56 ~~~eLk~~l~~~~~~vv~l~-~~~~vDl~Il~~A~~FIGNcvS 97 (132)
....|++.+...+++++..+ ....+.+..-+++|.+|++-..
T Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~ 164 (239)
T 1lst_A 122 QEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVA 164 (239)
T ss_dssp HHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHH
T ss_pred HHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHH
Confidence 34456666654467777664 4788999999999999998654
No 122
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=34.96 E-value=49 Score=20.32 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
+...++..+... +. .|..+++..
T Consensus 13 ~~~~l~~~l~~~-~~-~v~~~~~~~ 35 (116)
T 3a10_A 13 IRELLKEELQEE-GY-EIDTAENGE 35 (116)
T ss_dssp HHHHHHHHHHHT-TC-EEEEESSHH
T ss_pred HHHHHHHHHHHC-CC-EEEEeCCHH
Confidence 344455555554 44 244444443
No 123
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=34.62 E-value=78 Score=21.97 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=22.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
.|+|. +.+..-+++..+ . +++.+.+.++. .-++|.++.++.|++++
T Consensus 83 i~vp~-~~~~~vv~~~~~-~-gi~~i~~~~g~--~~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 83 LFVKP-KLTMEYVEQAIK-K-GAKVVWFQYNT--YNREASKKADEAGLIIV 128 (144)
T ss_dssp ECSCH-HHHHHHHHHHHH-H-TCSEEEECTTC--CCHHHHHHHHHTTCEEE
T ss_pred EEeCH-HHHHHHHHHHHH-c-CCCEEEECCCc--hHHHHHHHHHHcCCEEE
Confidence 45555 333333433333 3 56666554432 24555555555555543
No 124
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.55 E-value=42 Score=27.51 Aligned_cols=74 Identities=8% Similarity=0.009 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCCcEEEeC----CCchHHHH-------HHHhhcCe
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTEIRIVPS----DQSPHVDL-------AILSQANH 90 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~~~vv~l----~~~~~vDl-------~Il~~A~~ 90 (132)
....+++.+|++.+.++ .+|||.. ++- ..+.+||+.|+..|.++.-. -..+.=+. -+-.-.+|
T Consensus 6 e~K~~~v~el~e~l~~~---~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~ 82 (339)
T 3j21_k 6 EWKKKEVEELANLIKSY---PVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINY 82 (339)
T ss_dssp CCTTTHHHHHHHHHHHS---SEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCC
T ss_pred HHHHHHHHHHHHHHHhC---CEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHH
Confidence 34567899999999987 8999998 644 47999999999865544321 11111111 12345689
Q ss_pred eeecceeecch
Q psy9357 91 FIGNCISSFTA 101 (132)
Q Consensus 91 FIGNcvSSFTa 101 (132)
+-||+.=-||.
T Consensus 83 L~G~~~l~Ft~ 93 (339)
T 3j21_k 83 IEGGAGILVTT 93 (339)
T ss_dssp CCTTEEEEEES
T ss_pred hcCCeEEEEEC
Confidence 99999888883
No 125
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=34.09 E-value=70 Score=23.33 Aligned_cols=49 Identities=16% Similarity=0.463 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc--HHHHHHhhccCCcEEEeC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL--NEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~--~~eLk~~l~~~~~~vv~l 74 (132)
+.|-.+|++.|.+-++.. +++.|.+-+|.++- .+.|.+ |.+.|+.|.+.
T Consensus 8 fssdpeilkeivreikrq-gvrvvllysdqdekrrrerlee-fekqgvdvrtv 58 (162)
T 2l82_A 8 FSSDPEILKEIVREIKRQ-GVRVVLLYSDQDEKRRRERLEE-FEKQGVDVRTV 58 (162)
T ss_dssp EESCHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHH-HHTTTCEEEEC
T ss_pred ecCCHHHHHHHHHHHHhC-CeEEEEEecCchHHHHHHHHHH-HHHcCCceeee
Confidence 456778888888888887 99999999987752 333333 44457777664
No 126
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=33.98 E-value=37 Score=30.04 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
.|+.+.+++.|++.+++- . ||+|||++.+ ..+|-++++
T Consensus 60 ~~~~~~~~~~lk~l~k~a---d-iiiAtD~DREGE~I~~~i~~~~~ 101 (633)
T 2gai_A 60 IKGKEKVVEKLKDLAKKG---E-LLIASDMDREGEAIAWHIARVTN 101 (633)
T ss_dssp CTTCHHHHHHHHHHHHHS---C-EEECCCSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhhC---C-EEEcCCCCcccCHHHHHHHHHcC
Confidence 467788999999998864 5 9999999973 334445553
No 127
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=33.79 E-value=55 Score=21.72 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHH
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLK 61 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk 61 (132)
+-..+.+.++..+++. +.+.+..+++....++.|+
T Consensus 44 d~~~~~~~l~~~L~~~-g~~v~~~~~~~~~al~~l~ 78 (157)
T 3hzh_A 44 DSVFTVKQLTQIFTSE-GFNIIDTAADGEEAVIKYK 78 (157)
T ss_dssp SCHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHH
Confidence 3344555555555554 5444434555544444443
No 128
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=33.70 E-value=88 Score=24.58 Aligned_cols=17 Identities=18% Similarity=0.213 Sum_probs=7.7
Q ss_pred HHHHHHHhCCCcEEEEec
Q psy9357 34 LKRVVREHGQIKYIFVAT 51 (132)
Q Consensus 34 ik~~~~~~~~lk~VfIaT 51 (132)
+++..+++ +++.||+.+
T Consensus 133 ~~~~~~~~-Gl~~I~lva 149 (252)
T 3tha_A 133 LIKECERY-NIALITLVS 149 (252)
T ss_dssp HHHHHHHT-TCEECEEEE
T ss_pred HHHHHHHc-CCeEEEEeC
Confidence 34444444 444444444
No 129
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=33.46 E-value=1.4e+02 Score=22.50 Aligned_cols=34 Identities=6% Similarity=0.207 Sum_probs=22.7
Q ss_pred HHHHhhcCeeeecceeecchhhhhhhhcCCCCC-CcccCC
Q psy9357 82 LAILSQANHFIGNCISSFTAFVKRHRDVKGLPS-SFWAFP 120 (132)
Q Consensus 82 l~Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps-~F~g~~ 120 (132)
.+++++||.||||- |+-+.. =-+.|.|+ ..||-.
T Consensus 256 ~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~lfg~t 290 (348)
T 1psw_A 256 VILIAACKAIVTND----SGLMHV-AAALNRPLVALYGPS 290 (348)
T ss_dssp HHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEEESSS
T ss_pred HHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEEECCC
Confidence 57999999999986 333333 34678775 555543
No 130
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=33.37 E-value=1.1e+02 Score=23.97 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEE---------eCCC-chHHHHHHHhhcCe-eeec
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIV---------PSDQ-SPHVDLAILSQANH-FIGN 94 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv---------~l~~-~~~vDl~Il~~A~~-FIGN 94 (132)
.++.+++.++.+.++.++++=+.|. |.+...++|++.+++.++... .+.+ ...+ ..+++.||+ |+|.
T Consensus 208 ~~~~ll~A~~~l~~~~p~~~lvivG-~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl-~~~y~~aDv~vl~s 285 (374)
T 2xci_A 208 EVEIILKAFKEIKKTYSSLKLILVP-RHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGIL-KELYPVGKIAIVGG 285 (374)
T ss_dssp GHHHHHHHHHHHHTTCTTCEEEEEE-SSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCH-HHHGGGEEEEEECS
T ss_pred hHHHHHHHHHHHHhhCCCcEEEEEC-CCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHH-HHHHHhCCEEEECC
Confidence 4677888877777665567666554 555445678777776665432 2211 1222 357889998 5543
Q ss_pred ceeecchhhhhhhhcCCCC
Q psy9357 95 CISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 95 cvSSFTa~V~reR~~~G~p 113 (132)
...-+-..+--|=++.|.|
T Consensus 286 s~~e~gg~~~lEAmA~G~P 304 (374)
T 2xci_A 286 TFVNIGGHNLLEPTCWGIP 304 (374)
T ss_dssp SSSSSCCCCCHHHHTTTCC
T ss_pred cccCCCCcCHHHHHHhCCC
Confidence 2211112556677888888
No 131
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=33.21 E-value=75 Score=20.50 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcc
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNN 55 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~ 55 (132)
-..+...++..+++.++...|..+++..+
T Consensus 22 ~~~~~~~l~~~L~~~~~~~~v~~~~~~~~ 50 (145)
T 3kyj_B 22 AAMMRLYIASFIKTLPDFKVVAQAANGQE 50 (145)
T ss_dssp CHHHHHHHHHHHTTCTTEEEEEEESSHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCHHH
Confidence 34444455555544323333444444433
No 132
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=33.10 E-value=1.5e+02 Score=22.18 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=55.9
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcCe
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQANH 90 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~~ 90 (132)
..|+-....+.+-+.+.+. +.++|.+.++... ..+.++++|++.|++++. .+ + .+.+..+.-..+|.
T Consensus 131 ~~~~~~~~~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~da 209 (375)
T 4evq_A 131 TSFANGQIGRATGDAMIKA-GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDC 209 (375)
T ss_dssp SSCCHHHHHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSE
T ss_pred eeCChHhHHHHHHHHHHHc-CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCE
Confidence 4577778888888888887 8888888774333 356678888888887753 11 2 56666666667776
Q ss_pred eee--cceeecchhhhhhhhcCCCC
Q psy9357 91 FIG--NCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 91 FIG--NcvSSFTa~V~reR~~~G~p 113 (132)
.+. |. .....+++..|+ .|+.
T Consensus 210 i~~~~~~-~~a~~~~~~~~~-~g~~ 232 (375)
T 4evq_A 210 VYAFFSG-GGALKFIKDYAA-ANLG 232 (375)
T ss_dssp EEEECCT-HHHHHHHHHHHH-TTCC
T ss_pred EEEecCc-chHHHHHHHHHH-cCCC
Confidence 664 33 233344454443 4543
No 133
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=33.09 E-value=49 Score=20.96 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
.+...++..++.. +. .|..++|..
T Consensus 13 ~~~~~l~~~l~~~-g~-~v~~~~~~~ 36 (122)
T 3gl9_A 13 VLRKIVSFNLKKE-GY-EVIEAENGQ 36 (122)
T ss_dssp HHHHHHHHHHHHT-TC-EEEEESSHH
T ss_pred HHHHHHHHHHHHC-Cc-EEEEeCCHH
Confidence 3444555555554 43 344455443
No 134
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=33.06 E-value=1.8e+02 Score=23.48 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcE---EEeCCCchHHHH-HHHhhcCeeeecceeecchh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIR---IVPSDQSPHVDL-AILSQANHFIGNCISSFTAF 102 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~---vv~l~~~~~vDl-~Il~~A~~FIGNcvSSFTa~ 102 (132)
.+.+++.+.++.++.++++=+.+..| .+..++|++.+++.++. |+-+...+.-|+ .+++.||+|+=....+|. .
T Consensus 390 ~~~li~a~~~l~~~~~~~~l~i~G~~-g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g-~ 467 (568)
T 2vsy_A 390 NPQSMARMLAVLREVPDSVLWLLSGP-GEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAH-T 467 (568)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEECCS-TTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSSCCS-H
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCC-HHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCCCCc-H
Confidence 46667777777666556665555533 34567888888776653 333344443343 578999999955444333 3
Q ss_pred hhhhhhcCCCC
Q psy9357 103 VKRHRDVKGLP 113 (132)
Q Consensus 103 V~reR~~~G~p 113 (132)
+.-|=+..|.|
T Consensus 468 ~~lEAma~G~P 478 (568)
T 2vsy_A 468 TASDALWTGCP 478 (568)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhCCCC
Confidence 55666888888
No 135
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=32.97 E-value=28 Score=25.61 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=28.0
Q ss_pred EEEecCCcccHHHHHHhhcc-CCcEEEeC--CCchHHHHHHHhh-cCeeeecc
Q psy9357 47 IFVATDNNNLNEPLKEAFKR-TEIRIVPS--DQSPHVDLAILSQ-ANHFIGNC 95 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~-~~~~vv~l--~~~~~vDl~Il~~-A~~FIGNc 95 (132)
||.+++-...+++|.+.|++ .|++|.-. .....+.++.-+. +|+|++.-
T Consensus 11 v~~a~s~~~~~~~l~~~Fe~~~gi~V~~~~~~s~~l~~~i~~g~~~Dv~~~a~ 63 (237)
T 3r26_A 11 VFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISAD 63 (237)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHTCCCSEEECSS
T ss_pred EEEccchHHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHcCCCceEEEECC
Confidence 44333334556777777764 36665433 4345555555554 88888754
No 136
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=32.92 E-value=20 Score=33.68 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
+.+.+++.|++..+ ++..||+|||++.+ ..+|-+.++
T Consensus 645 ~~~~~~~~lk~~~~---~~d~i~~atD~DrEGE~I~~~i~~~~~ 685 (1104)
T 4ddu_A 645 DKTETLRALREISL---EADEILVATDPDVEGEKISWDVTQYLL 685 (1104)
T ss_dssp EHHHHHHHHHHHTT---TCSEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHh---cCCEEEECcCCchhHHHHHHHHHHHhc
Confidence 66778888887765 67999999999973 344555654
No 137
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=32.84 E-value=80 Score=24.53 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
...+.+.+++++-+..+.++-+++.-|+|+|.+....+-.+++|+. |..|+.-
T Consensus 50 ~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~a-GkhVl~E 102 (312)
T 3o9z_A 50 AEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRL-GANALSE 102 (312)
T ss_dssp CEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHHT-TCEEEEC
T ss_pred CceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHHC-CCeEEEE
Confidence 4567889998877666653224899999999887778888888875 7777754
No 138
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=32.69 E-value=70 Score=23.32 Aligned_cols=40 Identities=10% Similarity=0.302 Sum_probs=28.0
Q ss_pred ccHHHHHHhhccCCcEEEeC-C-------CchHHHHHHHhhcCeeeec
Q psy9357 55 NLNEPLKEAFKRTEIRIVPS-D-------QSPHVDLAILSQANHFIGN 94 (132)
Q Consensus 55 ~~~~eLk~~l~~~~~~vv~l-~-------~~~~vDl~Il~~A~~FIGN 94 (132)
.+.++++++|+..|+.|+.= . ....-|+.-+.+||.+|.+
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ 74 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIAD 74 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEE
Confidence 46777777777767655431 1 1366788889999999888
No 139
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.66 E-value=44 Score=21.58 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=16.6
Q ss_pred cEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.+|.|..|.......|+..|...|+.|+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~ 35 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEIA 35 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 345555555555555666665555555443
No 140
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=32.58 E-value=1.3e+02 Score=25.53 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=38.8
Q ss_pred HHHHHHHHH-HHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHHHHH-HhhcCeeeecc
Q psy9357 30 VVRQLKRVV-REHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAI-LSQANHFIGNC 95 (132)
Q Consensus 30 I~~~ik~~~-~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vDl~I-l~~A~~FIGNc 95 (132)
.+-.+.+.+ .++ |++-|.+.|-..++-+++++.++..+..++-.+|...+-.+| -.++|.+|||.
T Consensus 291 ~~~~la~~L~~El-Gm~vv~~gt~~~~~~~~~~~~~~~~~~~v~i~~D~~el~~~i~~~~pDL~ig~~ 357 (525)
T 3aek_B 291 HVIAAARIAAKEV-GFEVVGMGCYNREMARPLRTAAAEYGLEALITDDYLEVEKAIEAAAPELILGTQ 357 (525)
T ss_dssp HHHHHHHHHHHTT-CCEEEEEEESCGGGHHHHHHHHHHTTCCCEECSCHHHHHHHHHHHCCSEEEECH
T ss_pred HHHHHHHHHHHHc-CCeeEEEecCchhHHHHHHHHHHhcCCcEEEeCCHHHHHHHHhhcCCCEEEecc
Confidence 344555555 677 788777777666666666666665433333224533333333 34789999985
No 141
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.49 E-value=77 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
..+...++..++.. +. .|..++|.
T Consensus 24 ~~~~~~l~~~L~~~-g~-~v~~~~~~ 47 (153)
T 3hv2_A 24 EVILQRLQQLLSPL-PY-TLHFARDA 47 (153)
T ss_dssp HHHHHHHHHHHTTS-SC-EEEEESSH
T ss_pred HHHHHHHHHHhccc-Cc-EEEEECCH
Confidence 34444455555544 33 23444444
No 142
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=32.45 E-value=77 Score=22.08 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=25.6
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
.|+|+ +.+..-+.+..+ . +++.|.+-+. ...++|.++.++.|++++
T Consensus 76 i~vp~-~~v~~v~~~~~~-~-g~~~i~i~~~--~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 76 VFRNS-EAAWGVAQEAIA-I-GAKTLWLQLG--VINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CCSCS-THHHHHHHHHHH-H-TCCEEECCTT--CCCHHHHHHHHTTTCEEE
T ss_pred EEeCH-HHHHHHHHHHHH-c-CCCEEEEcCC--hHHHHHHHHHHHcCCEEE
Confidence 56774 444444444444 4 6777766542 235666666666566554
No 143
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=32.43 E-value=81 Score=24.23 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
++..+-+.+.+. +++.|+|+||. ++++++++..+++++.
T Consensus 45 mi~~~l~~l~~~-~i~~IvV~t~~----~~i~~~~~~~g~~v~~ 83 (264)
T 3k8d_A 45 MIVHVLERARES-GAERIIVATDH----EDVARAVEAAGGEVCM 83 (264)
T ss_dssp HHHHHHHHHHHT-TCSEEEEEESC----HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhC-CCCEEEEECCH----HHHHHHHHHcCCEEEE
Confidence 444444445555 68899999974 3455555555666553
No 144
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=32.24 E-value=64 Score=19.75 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=10.2
Q ss_pred EEEecCCcccHHHHHHhhccCCcEE
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~~~v 71 (132)
|.|..|.......|+..|...++.+
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~v 28 (121)
T 1zh2_A 4 VLIVEDEQAIRRFLRTALEGDGMRV 28 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCEE
Confidence 3344444444444444444333333
No 145
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=31.97 E-value=1.4e+02 Score=22.02 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcE
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIR 70 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~ 70 (132)
.+.+++..++.+.-+..+.-++|||.- +.+--.++|+++|...|+.
T Consensus 3 ~~~~e~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~Gi~ 49 (284)
T 3smz_A 3 LDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELK 49 (284)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCEEEEECCCTTCCHHHHHHHTTTSCEE
T ss_pred CChHHHHHHHhhhhccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCE
Confidence 456777777777777665778999987 5555678899999988853
No 146
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=31.88 E-value=42 Score=31.11 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhh
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAF 64 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l 64 (132)
+.+.+++.|++..++ +..||+|||++.+ ..+|-+.+
T Consensus 608 ~~~~~~~~l~~l~~~---~d~ii~atD~DrEGE~I~~~i~~~~ 647 (1054)
T 1gku_B 608 NSRSRIEALRKLAHD---AEFVIVGTDPDTEGEKIAWDLKNLL 647 (1054)
T ss_dssp CHHHHHHHHHHHHHH---HSEEEECCCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc---CCEEEECCCCChhhhHHHHHHHHHh
Confidence 677888888888875 4899999999973 34455555
No 147
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.66 E-value=50 Score=20.69 Aligned_cols=13 Identities=0% Similarity=0.212 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHh
Q psy9357 29 TVVRQLKRVVREH 41 (132)
Q Consensus 29 ~I~~~ik~~~~~~ 41 (132)
...+.++..+...
T Consensus 16 ~~~~~l~~~L~~~ 28 (132)
T 2rdm_A 16 ILLLDFESTLTDA 28 (132)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 3444445555443
No 148
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=31.63 E-value=25 Score=26.57 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=29.8
Q ss_pred EEEEecCCcccHHHHHHhhcc--CCcEEEeC--CCchHHHHHHH-h-hcCeeeecc
Q psy9357 46 YIFVATDNNNLNEPLKEAFKR--TEIRIVPS--DQSPHVDLAIL-S-QANHFIGNC 95 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~--~~~~vv~l--~~~~~vDl~Il-~-~A~~FIGNc 95 (132)
.||.+++-...+++|-+.|.+ .|++|.-. .....+.++.. + .||+|++.-
T Consensus 8 ~v~~a~s~~~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~ 63 (292)
T 3cfz_A 8 KIFHAGSLSVPFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASAD 63 (292)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHTSCCCCSEEEESS
T ss_pred EEEEccchHHHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHhcCCCCcEEEECC
Confidence 355454544567777777754 36666543 34555666665 3 488888653
No 149
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=31.55 E-value=1.6e+02 Score=25.01 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=8.7
Q ss_pred hhcCeeeecce
Q psy9357 86 SQANHFIGNCI 96 (132)
Q Consensus 86 ~~A~~FIGNcv 96 (132)
.++|..|||.-
T Consensus 433 ~~pDLiig~~~ 443 (519)
T 1qgu_B 433 RQPDFMIGNSY 443 (519)
T ss_dssp HCCSEEEECGG
T ss_pred cCCCEEEECcc
Confidence 36999999963
No 150
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.54 E-value=1.4e+02 Score=21.94 Aligned_cols=69 Identities=6% Similarity=-0.008 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCC-cccHHHHHHhhccCCcEEEeC--CC--chHHHHHHHhhcCeeeecce
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDN-NNLNEPLKEAFKRTEIRIVPS--DQ--SPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~-~~~~~eLk~~l~~~~~~vv~l--~~--~~~vDl~Il~~A~~FIGNcv 96 (132)
+|--+|++.|+...+. +-|--+|.-.+ ...++.+.+.|.- ++++... ++ ...|..+.-.-.+++||-.+
T Consensus 78 ~s~~Dil~al~~a~~~--~~kIavvg~~~~~~~~~~~~~ll~~-~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~ 151 (196)
T 2q5c_A 78 VTRFDTMRAVYNAKRF--GNELALIAYKHSIVDKHEIEAMLGV-KIKEFLFSSEDEITTLISKVKTENIKIVVSGKT 151 (196)
T ss_dssp CCHHHHHHHHHHHGGG--CSEEEEEEESSCSSCHHHHHHHHTC-EEEEEEECSGGGHHHHHHHHHHTTCCEEEECHH
T ss_pred CCHhHHHHHHHHHHhh--CCcEEEEeCcchhhHHHHHHHHhCC-ceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHH
Confidence 4677899999988664 33556666654 4579999999942 4555555 33 78999999999999999654
No 151
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=31.37 E-value=77 Score=20.39 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN 55 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~ 55 (132)
.+...++..++.. +. .|..++|..+
T Consensus 15 ~~~~~l~~~L~~~-g~-~v~~~~~~~~ 39 (136)
T 3t6k_A 15 TVAEMLELVLRGA-GY-EVRRAASGEE 39 (136)
T ss_dssp HHHHHHHHHHHHT-TC-EEEEESSHHH
T ss_pred HHHHHHHHHHHHC-CC-EEEEeCCHHH
Confidence 3444555555554 43 3444544433
No 152
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=31.21 E-value=13 Score=30.88 Aligned_cols=60 Identities=8% Similarity=0.038 Sum_probs=42.9
Q ss_pred CcccHHHHHHhhccCCcEEEeC-CCchHHHHHHHhhcCeeeecceeecchhhhhhhhcCCCC
Q psy9357 53 NNNLNEPLKEAFKRTEIRIVPS-DQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLP 113 (132)
Q Consensus 53 ~~~~~~eLk~~l~~~~~~vv~l-~~~~~vDl~Il~~A~~FIGNcvSSFTa~V~reR~~~G~p 113 (132)
++.|+.||+..|+++|++|+.+ |+...-|+.=+++|.+-|.-|-.+ +.-.....+..|.|
T Consensus 206 ~~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~-~~~A~~Le~~~giP 266 (460)
T 2xdq_A 206 PDPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFL-SRTATTLIRRRKCQ 266 (460)
T ss_dssp CHHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTC-HHHHHHHHHTTCCE
T ss_pred CccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhH-HHHHHHHHHHcCCC
Confidence 5568999999999999999887 776666777779999988766544 23333344455654
No 153
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.95 E-value=38 Score=21.59 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=9.7
Q ss_pred EEEecCCcccHHHHHHhhccCCcE
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTEIR 70 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~~~ 70 (132)
|.|..|.....+.|+..|...|+.
T Consensus 10 ilivdd~~~~~~~l~~~L~~~g~~ 33 (136)
T 3hdv_A 10 VLVVDDNAVNREALILYLKSRGID 33 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCHHHHHHHHHHHHHcCce
Confidence 344444333344444444433333
No 154
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=30.62 E-value=51 Score=27.43 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=27.6
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 23 CFPSVETVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
+-+++++++++|..+++.. |...|-|.||=
T Consensus 278 ~~~tl~~~~~Hi~hi~~l~-G~dhVgiGsDf 307 (364)
T 3ly0_A 278 AEMGWEPVLRHLDHLIDRL-GEDHVGMGSDF 307 (364)
T ss_dssp SCCCSHHHHHHHHHHHHHH-CTTSEEECCCB
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence 5679999999999999999 99999999973
No 155
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=30.58 E-value=36 Score=23.41 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHh
Q psy9357 26 SVETVVRQLKRVVREH 41 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~ 41 (132)
|.++|++.||+|+++-
T Consensus 63 SPEgIv~~IKeWRa~n 78 (94)
T 3u43_A 63 SPEGIVKEIKEWRAAN 78 (94)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 7899999999999985
No 156
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=30.35 E-value=61 Score=19.92 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNN 55 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~ 55 (132)
.+...++..+... +. .|..+++...
T Consensus 11 ~~~~~l~~~l~~~-g~-~v~~~~~~~~ 35 (121)
T 2pl1_A 11 LLRHHLKVQIQDA-GH-QVDDAEDAKE 35 (121)
T ss_dssp HHHHHHHHHHHHT-TC-EEEEESSHHH
T ss_pred HHHHHHHHHHhhc-CC-EEEEeCCHHH
Confidence 3444555555554 43 2444544433
No 157
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=30.32 E-value=93 Score=21.42 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
.++..+-+.+... ++..|+|.|+... +++++.+...+++++.
T Consensus 32 pli~~~l~~l~~~-~~~~i~vv~~~~~--~~~~~~~~~~~~~~~~ 73 (199)
T 2waw_A 32 TLLGATLAMARRC-PFDQLIVTLGGAA--DEVLEKVELDGLDIVL 73 (199)
T ss_dssp EHHHHHHHHHHTS-SCSEEEEEECTTH--HHHHHHSCCTTSEEEE
T ss_pred CHHHHHHHHHHhC-CCCcEEEEeCCCH--HHHHHHhccCCCEEEE
Confidence 3455555555555 6789999996542 4666667655666654
No 158
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=30.24 E-value=81 Score=22.64 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCcEEEEec-CCcc-----cHHHHHHhhccCCcEEEe---C-CC--------------chHHHHHHHhhcCeeeecc
Q psy9357 43 QIKYIFVAT-DNNN-----LNEPLKEAFKRTEIRIVP---S-DQ--------------SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 43 ~lk~VfIaT-D~~~-----~~~eLk~~l~~~~~~vv~---l-~~--------------~~~vDl~Il~~A~~FIGNc 95 (132)
+-.+||+|. .... ++++++++|+..| .|+. . |. ....|+.-+.+||.+|.+.
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~ 85 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEV 85 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEEC
Confidence 345788887 3321 5678888888777 6632 1 11 2567888999999999865
No 159
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=30.10 E-value=1.2e+02 Score=24.15 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
..-.|+.+++.+++.+++++. .-..|.|++-+-.-..+|-.+.++.+-+|+..
T Consensus 153 ~~~~pse~~v~~~l~~~i~~~-~~g~vii~~f~vgR~q~i~~~a~~~grkV~v~ 205 (336)
T 3zdk_A 153 ALVLPSRQEAAHQIVQLIRKH-PQHNIKIGLYSLGKESLLEQLALEFQTWVVLS 205 (336)
T ss_dssp TCCCCCHHHHHHHHHHHHHTC-TTSEEEEEECSSSCHHHHHHHHHHHTCCEECC
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHcCCEEEEE
Confidence 345799999999999999986 33589999976666677766666656566543
No 160
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=30.00 E-value=49 Score=29.48 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhc
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFK 65 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~ 65 (132)
|+.+.+++.|++++++ +..||+|||++.+ ..+|-+.++
T Consensus 79 ~~~~~~~~~lk~l~k~---ad~iiiAtD~DREGE~I~~~i~~~~~ 120 (659)
T 1i7d_A 79 PSVTKQLNVIKRFLHE---ASEIVHAGDPDREGQLLVDEVLDYLQ 120 (659)
T ss_dssp GGGHHHHHHHHHHHHH---CSEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhc---CCeEEEcCCCCCCCCHHHHHHHHHhC
Confidence 3556778888888875 4799999999963 334445553
No 161
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.00 E-value=47 Score=21.32 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=16.7
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
+|.|..|.......|+..|...|+.|+.
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~~ 33 (142)
T 2qxy_A 6 TVMVVDESRITFLAVKNALEKDGFNVIW 33 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGTCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEE
Confidence 4556666655666666666655555553
No 162
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=29.92 E-value=46 Score=24.55 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.1
Q ss_pred cEEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 45 KYIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 45 k~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
.+|.|++|.. +.-++|+++|++.|++|+-+
T Consensus 8 mkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~ 39 (148)
T 4em8_A 8 KRVFLSSDHAGVELRLFLSAYLRDLGCEVFDC 39 (148)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHTTCEEEEC
T ss_pred eEEEEEECchhHHHHHHHHHHHHHCCCEEEEe
Confidence 5799999976 46788999999889999876
No 163
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=29.88 E-value=2e+02 Score=22.54 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCcEEEEecC-CcccHHHHHHhhccCCcEEEeC--CCchHHH-HHHHhhcCeeeec-------ceee-----cchhhhhh
Q psy9357 43 QIKYIFVATD-NNNLNEPLKEAFKRTEIRIVPS--DQSPHVD-LAILSQANHFIGN-------CISS-----FTAFVKRH 106 (132)
Q Consensus 43 ~lk~VfIaTD-~~~~~~eLk~~l~~~~~~vv~l--~~~~~vD-l~Il~~A~~FIGN-------cvSS-----FTa~V~re 106 (132)
|+..|.|. | ..+..+++.+++++.|++.+.+ |....-. ..|...+.-||.- +.++ ....|++-
T Consensus 125 GvdGvIip-Dlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~v 203 (271)
T 3nav_A 125 GVDSVLIA-DVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERL 203 (271)
T ss_dssp TCCEEEET-TSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHH
T ss_pred CCCEEEEC-CCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHH
Confidence 56666553 4 3346777888888778877766 4332222 3567778877742 2221 33556777
Q ss_pred hhcCCCCCCc-ccCC
Q psy9357 107 RDVKGLPSSF-WAFP 120 (132)
Q Consensus 107 R~~~G~ps~F-~g~~ 120 (132)
|...+.|--- ||..
T Consensus 204 r~~~~~Pv~vGfGIs 218 (271)
T 3nav_A 204 QQFDAPPALLGFGIS 218 (271)
T ss_dssp HHTTCCCEEECSSCC
T ss_pred HHhcCCCEEEECCCC
Confidence 7776666432 4444
No 164
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=29.73 E-value=62 Score=20.87 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=9.9
Q ss_pred EEEecCCcccHHHHHHhhccCCcE
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTEIR 70 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~~~ 70 (132)
|.|..|.....+.|+..|...++.
T Consensus 7 Ilivdd~~~~~~~l~~~L~~~g~~ 30 (136)
T 2qzj_A 7 ILIIDGDKDNCQKLKGFLEEKGIS 30 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCE
Confidence 344444444444444444433333
No 165
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus epidermidis ATCC structural genomics, PSI-2, protein structure initiative; HET: MES; 2.32A {Staphylococcus epidermidis}
Probab=29.68 E-value=1.4e+02 Score=21.97 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=33.7
Q ss_pred cCCCHHHHHHHHHHH---HHHhCCCcEEEEecCCc-ccHHHHHHhhccCCcEEE
Q psy9357 23 CFPSVETVVRQLKRV---VREHGQIKYIFVATDNN-NLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~---~~~~~~lk~VfIaTD~~-~~~~eLk~~l~~~~~~vv 72 (132)
-.|+.++..+.|... -+.. +++.+++....+ .+-++|.+.|...|..+.
T Consensus 46 ~~p~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~Gf~~~ 98 (254)
T 3frm_A 46 TMPTMNQWLKDIEVQKKMHLNQ-SSYHLSFSFPANEKIDEVLLEKIRELGFQIG 98 (254)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHT-TCCCEEEECCTTCCCCHHHHHHHHHTTCEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCCCHHHHHHHHHcCcchh
Confidence 457788877755444 4444 788899888544 467788999988776443
No 166
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=29.51 E-value=49 Score=24.62 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.6
Q ss_pred CcEEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 44 IKYIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 44 lk~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
--+|+|++|.. +.-++|++.|++.|++|+-+
T Consensus 12 ~~~i~igsDhaG~~lK~~i~~~L~~~G~eV~D~ 44 (155)
T 1o1x_A 12 HVKIAIASDHAAFELKEKVKNYLLGKGIEVEDH 44 (155)
T ss_dssp CCEEEEEECSTTHHHHHHHHHHHHHTTCEEEEC
T ss_pred ceeEEEeeCchHHHHHHHHHHHHHHCCCEEEEe
Confidence 35799999865 46888999999889999876
No 167
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=29.45 E-value=56 Score=23.35 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=29.4
Q ss_pred HHHHhhccCCcEEEeC---CCc-hHHH----HHH-HhhcCeeeecceeecch
Q psy9357 59 PLKEAFKRTEIRIVPS---DQS-PHVD----LAI-LSQANHFIGNCISSFTA 101 (132)
Q Consensus 59 eLk~~l~~~~~~vv~l---~~~-~~vD----l~I-l~~A~~FIGNcvSSFTa 101 (132)
-|.++|.+.|++|+.. +|+ ..+- .+. ..++|+.|-++-.|.|.
T Consensus 44 ~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~ 95 (178)
T 3iwt_A 44 IIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSP 95 (178)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSST
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCC
Confidence 3667788789888765 773 2232 222 25689999999988775
No 168
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=29.44 E-value=1.1e+02 Score=22.87 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=56.1
Q ss_pred ccCCCHHHHHHHHHHH-HHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEe---C----CC-chHHHHHHHhhc
Q psy9357 22 LCFPSVETVVRQLKRV-VREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVP---S----DQ-SPHVDLAILSQA 88 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~-~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~---l----~~-~~~vDl~Il~~A 88 (132)
...|+-....+.+-+. ++.. +.++|.|.++.+. ..+.++++|++.|++++. . .+ .+.+..+.-..+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~-g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 194 (356)
T 3ipc_A 116 RTCGRDDQQGGIAGKYLADHF-KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGV 194 (356)
T ss_dssp ESSCCHHHHHHHHHHHHHHHC-TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTC
T ss_pred EecCChHHHHHHHHHHHHHhc-CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCC
Confidence 3457777777776664 4555 7788888775444 356677788777765542 2 22 677777777788
Q ss_pred Ceeeecc-eeecchhhhhhhhcCCCCCCccc
Q psy9357 89 NHFIGNC-ISSFTAFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 89 ~~FIGNc-vSSFTa~V~reR~~~G~ps~F~g 118 (132)
|..+-.+ -.....+++..|+. |+...+.|
T Consensus 195 d~v~~~~~~~~a~~~~~~~~~~-g~~~~~~~ 224 (356)
T 3ipc_A 195 SIIYWGGLHTEAGLIIRQAADQ-GLKAKLVS 224 (356)
T ss_dssp CEEEEESCHHHHHHHHHHHHHH-TCCCEEEE
T ss_pred CEEEEccCchHHHHHHHHHHHC-CCCCcEEE
Confidence 8776322 22333455555543 54433333
No 169
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=29.32 E-value=84 Score=23.68 Aligned_cols=44 Identities=2% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCcEEEEec-CCc---ccHHHHHHhhccCCcEEEeC
Q psy9357 31 VRQLKRVVREHGQIKYIFVAT-DNN---NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaT-D~~---~~~~eLk~~l~~~~~~vv~l 74 (132)
++.|-..++++++++.|++++ |.. +...+-.+.|+..|++|..+
T Consensus 98 a~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~~ 145 (190)
T 2nyt_A 98 ADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIM 145 (190)
T ss_pred HHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEEe
Confidence 444444444555888888855 653 22446667788888988876
No 170
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=29.17 E-value=66 Score=20.47 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
.+...++..++.. +. .|..+++..
T Consensus 14 ~~~~~l~~~L~~~-g~-~v~~~~~~~ 37 (132)
T 3crn_A 14 AILDSTKQILEFE-GY-EVEIAATAG 37 (132)
T ss_dssp HHHHHHHHHHHHT-TC-EEEEESSHH
T ss_pred HHHHHHHHHHHHC-Cc-eEEEeCCHH
Confidence 3444555555554 44 233444443
No 171
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=28.64 E-value=23 Score=20.45 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=12.8
Q ss_pred CCcccccccCCccccccccCC
Q psy9357 5 APQCLGYRNEYGVATEELCFP 25 (132)
Q Consensus 5 spqC~g~~~e~~~lt~~~C~P 25 (132)
-|||-|...|+---...-|-|
T Consensus 4 lpqcqgddqekclcnkdecpp 24 (39)
T 1dec_A 4 LPQCQGDDQEKCLCNKDECPP 24 (39)
T ss_dssp CCBCCSSCSSCEESSSSEECT
T ss_pred CccccCcchhhccccCCCCCC
Confidence 489999866554444444444
No 172
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=28.51 E-value=42 Score=22.84 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHh
Q psy9357 26 SVETVVRQLKRVVREH 41 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~ 41 (132)
|.+.|++.||+|+++-
T Consensus 64 sPEgIv~~iKeWRa~n 79 (87)
T 1unk_A 64 SPEGIVKEIKEWRAAN 79 (87)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 6899999999999985
No 173
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=28.44 E-value=66 Score=26.66 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
-++++.++++|..+++.. |...|-|.||-
T Consensus 261 ~~t~~~~~~hi~hi~~~~-G~dhVgiGsDf 289 (369)
T 1itu_A 261 KANLSQVADHLDHIKEVA-GARAVGFGGDF 289 (369)
T ss_dssp CCBHHHHHHHHHHHHHHH-CGGGEEECCCT
T ss_pred CCCHHHHHHHHHHHHHhh-CCCeEEECCCC
Confidence 468999999999999999 99999999984
No 174
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.26 E-value=46 Score=21.26 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=11.7
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~v 71 (132)
+|.|..|.....+.|+..|...|+.|
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~g~~v 34 (142)
T 3cg4_A 9 DVMIVDDDAHVRIAVKTILSDAGFHI 34 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCeEE
Confidence 34444444444444444444444443
No 175
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=28.22 E-value=1e+02 Score=23.67 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhcc---CCcEEEeC
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR---TEIRIVPS 74 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~---~~~~vv~l 74 (132)
-+.+.|++++++++++ -=+.|+++...+. +++|+..|.+ -|+.|.-+
T Consensus 6 k~~e~Ii~r~~e~I~~--A~~el~lsi~~e~-l~~l~~~L~~A~~rGV~V~li 55 (233)
T 2f5t_X 6 RSFDEAIEMFRESLYS--AKNEVIVVTPSEF-FETIREDLIKTLERGVTVSLY 55 (233)
T ss_dssp SCHHHHHHHHHHHHHT--CSSEEEEEECGGG-HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHH--hhhEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEE
Confidence 4788999999999997 3578888775543 4555555543 27766654
No 176
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=28.18 E-value=90 Score=22.80 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=32.8
Q ss_pred EEEEec---C-Cc--ccHHHHHHhhccCCcEEEeC---C---------------CchHHHHHHHhhcCeeeecce
Q psy9357 46 YIFVAT---D-NN--NLNEPLKEAFKRTEIRIVPS---D---------------QSPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 46 ~VfIaT---D-~~--~~~~eLk~~l~~~~~~vv~l---~---------------~~~~vDl~Il~~A~~FIGNcv 96 (132)
+||+|. . .. .+.+++.+.|++.| .|.+. + .....|+.-+.+||.+|-+..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~ 77 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT 77 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC
Confidence 677775 1 22 24577777777666 44321 1 156789999999999998754
No 177
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog; structural genomics, joint center for structural genomics, JCSG; 1.78A {Thermotoga maritima} SCOP: c.51.4.1
Probab=27.99 E-value=31 Score=26.73 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=26.2
Q ss_pred CCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 43 QIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 43 ~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+-+.|++||.|..-+.|+++.|... ++|+++
T Consensus 14 ~~~~iv~aT~N~~Kl~E~~~iL~~~-iev~~~ 44 (208)
T 1vp2_A 14 KKLTVYLATTNPHKVEEIKMIAPEW-MEILPS 44 (208)
T ss_dssp -CEEEEESCCCHHHHHHHHTTCCTT-EEEEEC
T ss_pred ccCeEEEEcCCHHHHHHHHHHhhcC-cEEEec
Confidence 4567999999999999999999765 788886
No 178
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.93 E-value=1.1e+02 Score=21.00 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=37.8
Q ss_pred cEEEEec-CC-ccc--HHHHHHhhccCCcEEEeC----CCchHHHHHHHhhcCeeeecceee
Q psy9357 45 KYIFVAT-DN-NNL--NEPLKEAFKRTEIRIVPS----DQSPHVDLAILSQANHFIGNCISS 98 (132)
Q Consensus 45 k~VfIaT-D~-~~~--~~eLk~~l~~~~~~vv~l----~~~~~vDl~Il~~A~~FIGNcvSS 98 (132)
.+|.++| .. .|. ..=+...|+..||+|+.+ |....++.++-.+||++.=.+.++
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~ 65 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYG 65 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSS
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCc
Confidence 4688888 33 343 445667888889999987 447778888888888775444433
No 179
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=27.85 E-value=1.7e+02 Score=21.95 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHH-HHHHhhcCeeeecc--eeecchh
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVD-LAILSQANHFIGNC--ISSFTAF 102 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vD-l~Il~~A~~FIGNc--vSSFTa~ 102 (132)
.++.+++.++.+.++.++++-+++. +.+. ++|++.+++..-.|.-+...+..+ ..++..||+||--. .-+| ..
T Consensus 223 g~~~li~a~~~l~~~~~~~~l~i~G-~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~-~~ 298 (406)
T 2gek_A 223 GMAVLLAALPKLVARFPDVEILIVG-RGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESF-GI 298 (406)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEEEES-CSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSS-CH
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEc-CCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCC-ch
Confidence 4577777777766654355544443 3333 777777765322233233332222 45778999999762 2233 23
Q ss_pred hhhhhhcCCCC
Q psy9357 103 VKRHRDVKGLP 113 (132)
Q Consensus 103 V~reR~~~G~p 113 (132)
+.-|=...|.|
T Consensus 299 ~~~Ea~a~G~P 309 (406)
T 2gek_A 299 VLVEAMAAGTA 309 (406)
T ss_dssp HHHHHHHHTCE
T ss_pred HHHHHHHcCCC
Confidence 44455666766
No 180
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=27.65 E-value=50 Score=18.01 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCC---------cEEEEecCCcccHHHHHHhhccCCcE
Q psy9357 31 VRQLKRVVREHGQI---------KYIFVATDNNNLNEPLKEAFKRTEIR 70 (132)
Q Consensus 31 ~~~ik~~~~~~~~l---------k~VfIaTD~~~~~~eLk~~l~~~~~~ 70 (132)
+..|++.+.+++++ +.+.|..|...-.++|.+++...|++
T Consensus 16 ~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~ 64 (66)
T 1yg0_A 16 VDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQE 64 (66)
T ss_dssp HHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 34455555554333 44555444433456677777655543
No 181
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=27.55 E-value=64 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
..+...++..++.. +. .|..++|.
T Consensus 17 ~~~~~~l~~~L~~~-g~-~v~~~~~~ 40 (154)
T 3gt7_A 17 PTQAEHLKHILEET-GY-QTEHVRNG 40 (154)
T ss_dssp HHHHHHHHHHHHTT-TC-EEEEESSH
T ss_pred HHHHHHHHHHHHHC-CC-EEEEeCCH
Confidence 44455555555554 43 34444444
No 182
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=27.46 E-value=1.7e+02 Score=21.53 Aligned_cols=46 Identities=9% Similarity=0.242 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEe------cC-Ccc-----cHHHHHHhhccCCcEEEe
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVA------TD-NNN-----LNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIa------TD-~~~-----~~~eLk~~l~~~~~~vv~ 73 (132)
++.+++.|+.+.++. ++++|.|= +| +++ .+.+|.+.|+..|++|.+
T Consensus 57 v~~av~eI~~~a~kv-~~~~ivlYPyAHLSs~La~P~~A~~iL~~le~~L~~~g~eV~r 114 (143)
T 2hl0_A 57 SLKAIEEISKVAEQV-KAENVFVYPFAHLSSELAKPSVAMDILNRVYQGLKERGFNVGK 114 (143)
T ss_dssp HHHHHHHHHHHHHHH-TCCEEEEEECGGGCSSBCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeccccccCccCChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 345666788888888 99999872 23 222 588888899877777665
No 183
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=27.35 E-value=45 Score=23.29 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEEeCCCchHHHHHH
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIVPSDQSPHVDLAI 84 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv~l~~~~~vDl~I 84 (132)
+++...+++- .++-|+||.|.++ .+.-|..+-..+++.++..+....+=.++
T Consensus 31 ~~v~kaI~~g-ka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~ 84 (113)
T 3jyw_G 31 NHVVALIENK-KAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLV 84 (113)
T ss_dssp HHHHHTTTTT-CCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHH
T ss_pred HHHHHHHHcC-CceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 3444445554 8999999999876 23445554556677766654433333333
No 184
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=27.33 E-value=75 Score=19.59 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q psy9357 30 VVRQLKRVVREH 41 (132)
Q Consensus 30 I~~~ik~~~~~~ 41 (132)
+...++..+...
T Consensus 14 ~~~~l~~~L~~~ 25 (122)
T 1zgz_A 14 TQARLQSYFTQE 25 (122)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 334444444443
No 185
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=27.31 E-value=78 Score=19.55 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
+...++..+... +.+ |..+++..
T Consensus 15 ~~~~l~~~l~~~-~~~-v~~~~~~~ 37 (123)
T 1xhf_A 15 TRNTLKSIFEAE-GYD-VFEATDGA 37 (123)
T ss_dssp HHHHHHHHHHTT-TCE-EEEESSHH
T ss_pred HHHHHHHHHhhC-CcE-EEEeCCHH
Confidence 344455555543 443 44444443
No 186
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=27.30 E-value=30 Score=26.27 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=28.8
Q ss_pred EEEEecCCcccHHHHHHhhccC-CcEEEeC--CCchHHHHHHHhh-cCeeeecc
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRT-EIRIVPS--DQSPHVDLAILSQ-ANHFIGNC 95 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~-~~~vv~l--~~~~~vDl~Il~~-A~~FIGNc 95 (132)
+||.+++-...+++|.+.|++. |++|.-. .....+.++.-+. ||+|++.-
T Consensus 26 ~V~~a~s~~~~~~~l~~~Fe~~~gi~V~~~~~~Sg~l~~qi~~g~~~DV~~sa~ 79 (253)
T 3gzg_A 26 TVFAAASLKESMDEAATAYEKATGTPVRVSYAASSALARQIEQGAPADVFLSAD 79 (253)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHSCCEEEEEECHHHHHHHHHTTCCCSEEECSS
T ss_pred EEEEecChHHHHHHHHHHHHHHhCCeEEEEECChHHHHHHHHcCCCceEEEECC
Confidence 3554444445677888888643 5555432 3344555554443 88888754
No 187
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=27.26 E-value=52 Score=20.72 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=10.8
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~v 71 (132)
+|.|..|.......|++.|...|+.+
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~g~~v 34 (130)
T 3eod_A 9 QILIVEDEQVFRSLLDSWFSSLGATT 34 (130)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCceE
Confidence 34444444444444444444434333
No 188
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=27.10 E-value=73 Score=24.30 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=7.2
Q ss_pred CCcEEEEecCC
Q psy9357 43 QIKYIFVATDN 53 (132)
Q Consensus 43 ~lk~VfIaTD~ 53 (132)
++..|+|+||.
T Consensus 41 ~~~~vvVvt~~ 51 (253)
T 4fcu_A 41 GFDDLCVATDD 51 (253)
T ss_dssp TCCEEEEEESC
T ss_pred CCCEEEEECCH
Confidence 56677777754
No 189
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=27.06 E-value=81 Score=23.13 Aligned_cols=73 Identities=11% Similarity=0.133 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccC---Cc--EEEe--CCCchHHHHHHHhhcCeeeec
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRT---EI--RIVP--SDQSPHVDLAILSQANHFIGN 94 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~---~~--~vv~--l~~~~~vDl~Il~~A~~FIGN 94 (132)
+...+++++|++.+++. ++|||.. ++- ..+.+|++.|++. |. .|++ +-..+.=+.-+-.-.++|.|+
T Consensus 6 ~~K~~~v~el~~~l~~~---~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~ 82 (180)
T 1zav_A 6 QQKELIVKEMSEIFKKT---SLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGP 82 (180)
T ss_dssp HHHHHHHHHHHHHHTTC---SEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSS
T ss_pred HHHHHHHHHHHHHHHhC---CEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCChhhHHHhCcCC
Confidence 35678889999888865 7899887 433 3688999999865 54 4443 100111111112234677787
Q ss_pred ceeecc
Q psy9357 95 CISSFT 100 (132)
Q Consensus 95 cvSSFT 100 (132)
+.=-||
T Consensus 83 ~a~~fs 88 (180)
T 1zav_A 83 TAVLYV 88 (180)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 766665
No 190
>2oq9_A Minicollagen-5; disulfide, CIS-proline, nematocyst, non-canonical CRD, cysteine-rich domain, structural protein; NMR {Synthetic}
Probab=26.88 E-value=24 Score=18.83 Aligned_cols=10 Identities=50% Similarity=0.906 Sum_probs=6.5
Q ss_pred CccCCccccc
Q psy9357 2 ETNAPQCLGY 11 (132)
Q Consensus 2 ~~~spqC~g~ 11 (132)
--.+|||-|.
T Consensus 15 ascapqccgr 24 (26)
T 2oq9_A 15 ASCAPQCCGR 24 (26)
T ss_dssp TTTTTTTTCC
T ss_pred HhccHHhhcC
Confidence 3456888764
No 191
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=26.75 E-value=1.1e+02 Score=18.31 Aligned_cols=42 Identities=7% Similarity=-0.007 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCC
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTE 68 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~ 68 (132)
+.+++..+++...... .-..|+|..|.+- .+-++-.++++.|
T Consensus 28 ~~~~L~~~l~~~~~~~-~~~~V~I~aD~~~~y~~vv~vmd~l~~aG 72 (74)
T 2jwk_A 28 TEEMVTQLSRQEFDKD-NNTLFLVGGAKEVPYEEVIKALNLLHLAG 72 (74)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhC-CCceEEEEcCCCCCHHHHHHHHHHHHHcC
Confidence 6688888888887775 4467999998764 2444555555444
No 192
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=26.68 E-value=2.8e+02 Score=23.23 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=8.0
Q ss_pred hhcCeeeecc
Q psy9357 86 SQANHFIGNC 95 (132)
Q Consensus 86 ~~A~~FIGNc 95 (132)
.++|.+|||.
T Consensus 371 ~~pDl~ig~~ 380 (511)
T 2xdq_B 371 VEPAAIFGTQ 380 (511)
T ss_dssp HCCSEEEECH
T ss_pred cCCCEEEecc
Confidence 3689999985
No 193
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=26.31 E-value=1.3e+02 Score=26.33 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CC------chHHHHHHHhhcCeeeecc
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQ------SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~------~~~vDl~Il~~A~~FIGNc 95 (132)
++.++..|+.+.++. ..|.|-+......++|.+.|...++++..+ .+ ..+++..--+..++.||+.
T Consensus 425 ~~~Ll~~l~~~~~~~---~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~ 497 (664)
T 1c4o_A 425 ILDLMEGIRERAARG---ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 497 (664)
T ss_dssp HHHHHHHHHHHHHTT---CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC
T ss_pred HHHHHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC
Confidence 455556666655543 578888888888899999998888766554 22 3445555556778888754
No 194
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=26.09 E-value=1.5e+02 Score=19.75 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=27.7
Q ss_pred cccccccCCCHHHHHHHHHHHH-HHhCCCcEEEEecC
Q psy9357 17 VATEELCFPSVETVVRQLKRVV-REHGQIKYIFVATD 52 (132)
Q Consensus 17 ~lt~~~C~Ps~~~I~~~ik~~~-~~~~~lk~VfIaTD 52 (132)
.+|...| |-.+.|.++++..+ +.++++++|-|--.
T Consensus 51 tlt~p~c-p~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 51 TMTSIGC-PMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp CCSCTTC-TTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred EECCCCC-cHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 4555566 77889999999999 77678999888664
No 195
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.87 E-value=78 Score=22.58 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=36.2
Q ss_pred CCcEEEEec-CCc-cc--HHHHHHhhccCCcEEEeC-CC---chHHHHHHHhhcCeee
Q psy9357 43 QIKYIFVAT-DNN-NL--NEPLKEAFKRTEIRIVPS-DQ---SPHVDLAILSQANHFI 92 (132)
Q Consensus 43 ~lk~VfIaT-D~~-~~--~~eLk~~l~~~~~~vv~l-~~---~~~vDl~Il~~A~~FI 92 (132)
.-.+|.++| ..+ |. +.-+..+|+..||+|+.+ .+ ...++.++-.++|+..
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~ 74 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIG 74 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEE
Confidence 356899999 433 43 566778888889999988 33 5677878878888654
No 196
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.86 E-value=50 Score=21.36 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCc
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
+-......++..++.. +--.|..+++..
T Consensus 28 d~~~~~~~l~~~L~~~-g~~~v~~~~~~~ 55 (146)
T 4dad_A 28 EDASRLAHLARLVGDA-GRYRVTRTVGRA 55 (146)
T ss_dssp SCHHHHHHHHHHHHHH-CSCEEEEECCCH
T ss_pred CCHHHHHHHHHHHhhC-CCeEEEEeCCHH
Confidence 3445555666666665 422344455544
No 197
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=25.73 E-value=2.1e+02 Score=21.35 Aligned_cols=81 Identities=16% Similarity=0.307 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeCCCchHHHH-HHHhhcCeeeecceeecchhhh
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDL-AILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl-~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
++.+++.++.+.++.++++ +.+..+.+. ..+++++.+...+ +|+-+......|+ .+++.||+||... +-+.
T Consensus 222 ~~~li~a~~~l~~~~~~~~-~i~~~g~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~ 294 (375)
T 3beo_A 222 MRNMFRAIKRLVDKHEDVQ-VVYPVHMNPVVRETANDILGDYG-RIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQ 294 (375)
T ss_dssp HHHHHHHHHHHHHHCTTEE-EEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHTCSEEEECC-----HHHH
T ss_pred HHHHHHHHHHHHhhCCCeE-EEEeCCCCHHHHHHHHHHhhccC-CEEEeCCCCHHHHHHHHHhCcEEEECC-----CChH
Confidence 5666777776666544565 444433322 2455555554211 2222222222344 4679999999753 4557
Q ss_pred hhhhcCCCCC
Q psy9357 105 RHRDVKGLPS 114 (132)
Q Consensus 105 reR~~~G~ps 114 (132)
-|=++.|.|.
T Consensus 295 lEA~a~G~Pv 304 (375)
T 3beo_A 295 EEAPSLGVPV 304 (375)
T ss_dssp HHHHHHTCCE
T ss_pred HHHHhcCCCE
Confidence 7888999993
No 198
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=25.69 E-value=84 Score=19.81 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=12.8
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
+|.|..|.....+.|+..|...|+.++
T Consensus 11 ~iLivdd~~~~~~~l~~~L~~~g~~v~ 37 (140)
T 3cg0_A 11 GVLIVEDGRLAAATLRIQLESLGYDVL 37 (140)
T ss_dssp EEEEECCBHHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCeeE
Confidence 344444444444445555544444444
No 199
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=25.60 E-value=1.1e+02 Score=20.13 Aligned_cols=84 Identities=10% Similarity=0.099 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeCCCchHHHH-HHHhhcCeeeecceeecchhhh
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDL-AILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l~~~~~vDl-~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
.++.+++.++.+.+. ++++-+++.. .+..++|++..++.+..+. +...+.-|+ .+++.||+||-....-=...+.
T Consensus 16 g~~~li~a~~~l~~~-~~~~l~i~G~--g~~~~~~~~~~~~~~~~v~-~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~ 91 (166)
T 3qhp_A 16 NQSVLIKAVALSKYK-QDIVLLLKGK--GPDEKKIKLLAQKLGVKAE-FGFVNSNELLEILKTCTLYVHAANVESEAIAC 91 (166)
T ss_dssp THHHHHHHHHTCTTG-GGEEEEEECC--STTHHHHHHHHHHHTCEEE-CCCCCHHHHHHHHTTCSEEEECCCSCCCCHHH
T ss_pred CHHHHHHHHHHhccC-CCeEEEEEeC--CccHHHHHHHHHHcCCeEE-EeecCHHHHHHHHHhCCEEEECCcccCccHHH
Confidence 345666666654222 2455444443 2345677777766565333 233223232 4779999999644322223456
Q ss_pred hhhhcCCC-C
Q psy9357 105 RHRDVKGL-P 113 (132)
Q Consensus 105 reR~~~G~-p 113 (132)
-|=+..|. |
T Consensus 92 ~Eama~G~vP 101 (166)
T 3qhp_A 92 LEAISVGIVP 101 (166)
T ss_dssp HHHHHTTCCE
T ss_pred HHHHhcCCCc
Confidence 66678887 6
No 200
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=25.54 E-value=1.4e+02 Score=25.96 Aligned_cols=67 Identities=12% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CC------chHHHHHHHhhcCeeeecce
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQ------SPHVDLAILSQANHFIGNCI 96 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~------~~~vDl~Il~~A~~FIGNcv 96 (132)
++.++..|+.+.++ -..|.|-+......++|.+.|+..|+++..+ .+ ...++..--+..++.||+.+
T Consensus 431 ~~~Ll~~l~~~~~~---~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~ 504 (661)
T 2d7d_A 431 IDDLIGEIQARIER---NERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL 504 (661)
T ss_dssp HHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC
T ss_pred HHHHHHHHHHHHhc---CCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch
Confidence 34455555554443 2578888888888999999999888776654 22 34555555677888888543
No 201
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=25.50 E-value=56 Score=24.05 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.0
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|.|++|.. +.-++|+++|++.|++|+-+
T Consensus 2 kI~igsDhaG~~lK~~i~~~L~~~G~eV~D~ 32 (149)
T 3he8_A 2 KIGIGSDHGGYNLKREIADFLKKRGYEVIDF 32 (149)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEECchhHHHHHHHHHHHHHCCCEEEEc
Confidence 488999966 46788999999889999876
No 202
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=25.46 E-value=79 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
-+++++++++|..+++.. |...|=|.||-
T Consensus 333 ~atl~~~~~Hidhi~~~~-G~dhVgiGsDf 361 (417)
T 2rag_A 333 RGDFDLYMKSMLHVLKVA-GPKGVCVGADW 361 (417)
T ss_dssp CCBHHHHHHHHHHHHHHH-CTTSEEECCCT
T ss_pred CCCHHHHHHHHHHHHHhc-CCceEEEccCC
Confidence 468999999999999999 99999999974
No 203
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=25.24 E-value=21 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.4
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+||| |=..||||++|.
T Consensus 163 ~~~ld~~LvL~ADH--g~NaSTftaRvv 188 (367)
T 2p2w_A 163 IRLLESAFILLMEQ--DINASTFAALVI 188 (367)
T ss_dssp HHHHHHHHHHHSCC--SSCHHHHHHHHH
T ss_pred HHHHHHHHhHhccC--CCchHHHHHHHH
Confidence 68899999999999 445799999874
No 204
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=25.10 E-value=22 Score=29.78 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.8
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+|||= +|+ ||||++|.
T Consensus 173 ~~~ld~~Lil~ADHe-~n~-St~tarvv 198 (375)
T 3tqg_A 173 IDCMNASLILYAEHE-FNA-STFAARVC 198 (375)
T ss_dssp HHHHHHHHHHHSCCS-SCH-HHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CCH-HHHHHHHH
Confidence 788999999999997 576 99999985
No 205
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.94 E-value=81 Score=20.12 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHH
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPL 60 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eL 60 (132)
....+.++..+... +. .|..+++....++.+
T Consensus 13 ~~~~~~l~~~l~~~-g~-~v~~~~~~~~a~~~~ 43 (143)
T 3jte_A 13 STILQNIKFLLEID-GN-EVLTASSSTEGLRIF 43 (143)
T ss_dssp HHHHHHHHHHHHHT-TC-EEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-Cc-eEEEeCCHHHHHHHH
Confidence 34555566666655 43 455555554444433
No 206
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=24.93 E-value=92 Score=25.58 Aligned_cols=62 Identities=5% Similarity=0.069 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcc--cHHHHHHhhccCCcEEE--eCCC----------chHHHHHHH---hhcCeeee
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEIRIV--PSDQ----------SPHVDLAIL---SQANHFIG 93 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~~--~~~eLk~~l~~~~~~vv--~l~~----------~~~vDl~Il---~~A~~FIG 93 (132)
++++.+.+++ . ++++|-||..- ..+++.+.|+..++++. .+++ ...++.+.- .|+|..||
T Consensus 33 l~~l~~~l~~--~-~rvlIVtd~~v~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIa 109 (368)
T 3qbe_A 33 LDELEDLLAD--R-HKVAVVHQPGLAETAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVS 109 (368)
T ss_dssp HHHHHHHHTT--C-SEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred HHHHHHHHHc--C-CEEEEEECccHHHHHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 4455555553 2 89999999764 46788889988777653 3332 233444442 25688876
Q ss_pred cc
Q psy9357 94 NC 95 (132)
Q Consensus 94 Nc 95 (132)
=|
T Consensus 110 vG 111 (368)
T 3qbe_A 110 LG 111 (368)
T ss_dssp EE
T ss_pred EC
Confidence 44
No 207
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=24.93 E-value=79 Score=25.19 Aligned_cols=45 Identities=4% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEec---CCcccHHHHHHhhccCCc-EEEeC
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVAT---DNNNLNEPLKEAFKRTEI-RIVPS 74 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaT---D~~~~~~eLk~~l~~~~~-~vv~l 74 (132)
+|.+++-+....- +.+-+||.| |.+.+.++.+++|++.|+ .|..+
T Consensus 43 ~i~~~~v~lagg~-~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L 91 (291)
T 3en0_A 43 EILQTFWSRSGGN-DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVL 91 (291)
T ss_dssp HHHHHHHHHTTGG-GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHcCCC-CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEE
Confidence 5666665555443 578899966 444578889999998888 45444
No 208
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=24.90 E-value=1.1e+02 Score=23.20 Aligned_cols=65 Identities=6% Similarity=0.152 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEE-Ee------C-CCchHHHHHHHh-hcCeeeecceee
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRI-VP------S-DQSPHVDLAILS-QANHFIGNCISS 98 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~v-v~------l-~~~~~vDl~Il~-~A~~FIGNcvSS 98 (132)
+.+++.++. ..+.||+.+..-.-++++-+.+++.+-.+ |. + +|...++..-.. ++|..|++-.+.
T Consensus 20 ~~l~~al~s--~~~~ifll~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d~~ai~fL~~~~~pdGIIsTk~~~ 93 (192)
T 3kts_A 20 KDMEKILEL--DLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNA 93 (192)
T ss_dssp HHHHHHTTS--SCCEEEECSEETTTHHHHHHHHHHTTCEEEEEGGGEETCCCSHHHHHHHHHTTCCSEEEESCHHH
T ss_pred HHHHHHHcC--CCCEEEEecCcHHHHHHHHHHHHHcCCeEEEecCchhccCCcHHHHHHHHhCCCCCEEEeCcHHH
Confidence 345555543 68999999976667888888888766433 32 3 677888877764 899999887553
No 209
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=24.85 E-value=1.1e+02 Score=19.32 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHH-hCCCcEEEEecCCcc
Q psy9357 28 ETVVRQLKRVVRE-HGQIKYIFVATDNNN 55 (132)
Q Consensus 28 ~~I~~~ik~~~~~-~~~lk~VfIaTD~~~ 55 (132)
..+...++..+.. . +.+.|..+++..+
T Consensus 18 ~~~~~~l~~~L~~~~-~~~~v~~~~~~~~ 45 (143)
T 3cnb_A 18 KEFADMLTQFLENLF-PYAKIKIAYNPFD 45 (143)
T ss_dssp HHHHHHHHHHHHHHC-TTCEEEEECSHHH
T ss_pred HHHHHHHHHHHHhcc-CccEEEEECCHHH
Confidence 3444555555555 3 4544555555433
No 210
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=24.82 E-value=9 Score=28.21 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCCc--EEEe--CCCchHHHHHHHhhcCeeeeccee
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTEI--RIVP--SDQSPHVDLAILSQANHFIGNCIS 97 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~~--~vv~--l~~~~~vDl~Il~~A~~FIGNcvS 97 (132)
...++++++|++++++. .+|||+. ++- ..+.+|++.|++.|+ +|++ +-..+.-+--+-.-.++|.|+..=
T Consensus 6 ~~K~~~V~el~~~l~~~---~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~tai 82 (165)
T 3sgf_H 6 QDKQAIVAEVSEVAKGA---LSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLI 82 (165)
T ss_dssp HHHHHHHHHHHHHHSCS---CEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCTTTCTTCSTTCCSCC
T ss_pred HHHHHHHHHHHHHHHhC---CEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCCcchhHHhCcCCEEE
Confidence 34677888888888854 7888765 333 267889999987654 5554 111111111112345778888766
Q ss_pred ecc
Q psy9357 98 SFT 100 (132)
Q Consensus 98 SFT 100 (132)
-||
T Consensus 83 ~fs 85 (165)
T 3sgf_H 83 AYS 85 (165)
T ss_dssp CEE
T ss_pred EEe
Confidence 666
No 211
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=24.75 E-value=2.1e+02 Score=21.07 Aligned_cols=48 Identities=15% Similarity=0.004 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEec-CCcc--cHHHHHHhhccCCcEEEeCC
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVAT-DNNN--LNEPLKEAFKRTEIRIVPSD 75 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~--~~~eLk~~l~~~~~~vv~l~ 75 (132)
+.+++.+.+.+..++ +-+-+++.+ |.-= .-.+|-+.|.+.++++...|
T Consensus 60 ~~~~~~~~i~~~~~~--g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viP 110 (239)
T 1va0_A 60 KQEEIHRLLLRHARA--HPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVP 110 (239)
T ss_dssp CHHHHHHHHHHHHHT--SSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHHHHC--CCcEEEEeCCCCccccCHHHHHHHHHHCCCcEEEEC
Confidence 456677776666654 446666655 4332 23444455555455554444
No 212
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.73 E-value=78 Score=23.90 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeCC
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPSD 75 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l~ 75 (132)
++.+.+.+..+.+.+.|+|+.|++. ...++.+.|....+.++.+|
T Consensus 186 ~~~l~~~~~~l~~~~~iil~~D~D~aG~~aa~~~~~~l~~~~v~~~~~p 234 (255)
T 1nui_A 186 KKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP 234 (255)
T ss_dssp HHHHHHTHHHHTTBSCEEEECCSSHHHHHHHHHHHHHSCTTTEEECCCS
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 3444444444445789999999986 46667777764234555444
No 213
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=24.50 E-value=86 Score=20.07 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCcccHH
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNE 58 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~ 58 (132)
-..+...++..+... +.. |..+++..+.++
T Consensus 12 ~~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~ 41 (138)
T 3c3m_A 12 SPMIVDVFVTMLERG-GYR-PITAFSGEECLE 41 (138)
T ss_dssp CHHHHHHHHHHHHHT-TCE-EEEESSHHHHHH
T ss_pred CHHHHHHHHHHHHHc-Cce-EEEeCCHHHHHH
Confidence 344556666666665 553 445555443333
No 214
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=24.43 E-value=1.7e+02 Score=19.99 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
++..+-+.+... +++.|+|.|+.. -++++++++..+++++.
T Consensus 33 ll~~~l~~l~~~-~~~~i~vv~~~~--~~~~~~~~~~~~~~~~~ 73 (197)
T 2wee_A 33 VLGATLDVARQA-GFDQLILTLGGA--ASAVRAAMALDGTDVVV 73 (197)
T ss_dssp HHHHHHHHHHHT-TCSEEEEEECTT--HHHHHHHSCCTTSEEEE
T ss_pred HHHHHHHHHHhc-CCCcEEEEeCCC--HHHHHHHhccCCCEEEE
Confidence 455555555555 678999998653 24566666554565554
No 215
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=24.37 E-value=1.2e+02 Score=23.02 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCccc-HHHHHHhhccCCcEEEe
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNL-NEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~-~~eLk~~l~~~~~~vv~ 73 (132)
+|=+. ++..+...++.. ++++|-|.|-...+ -+.+++.|...|++|+.
T Consensus 99 iPv~~-~~~A~~~al~~~-g~~rvglltpy~~~~~~~~~~~l~~~Giev~~ 147 (240)
T 3ixl_A 99 LPCTT-MSTAVLNGLRAL-GVRRVALATAYIDDVNERLAAFLAEESLVPTG 147 (240)
T ss_dssp SCEEE-HHHHHHHHHHHT-TCSEEEEEESSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEC-HHHHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHHHCCCEEec
Confidence 44442 556667777777 89999999954444 45677888888998876
No 216
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=24.32 E-value=88 Score=23.65 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=34.9
Q ss_pred CCHH-HHHHHHHHHHHHhCCCcEEEEecCC-cccHHHHHHhhccCCc
Q psy9357 25 PSVE-TVVRQLKRVVREHGQIKYIFVATDN-NNLNEPLKEAFKRTEI 69 (132)
Q Consensus 25 Ps~~-~I~~~ik~~~~~~~~lk~VfIaTD~-~~~~~eLk~~l~~~~~ 69 (132)
|+++ +++.++..++... .-..+.||..+ .--+.-|++.+++.|.
T Consensus 98 p~~~~ev~~~~~~fl~~~-~~~~~lVaHNav~FD~~fL~~~~~r~g~ 143 (242)
T 3mxm_B 98 QRFDDNLAILLRAFLQRQ-PQPCCLVAHNGDRYDFPLLQTELARLST 143 (242)
T ss_dssp CCSCHHHHHHHHHHHHTS-CSSEEEEETTTTTTHHHHHHHHHHTSSS
T ss_pred CchhHHHHHHHHHHHhcC-CCCCEEEEcCChHhhHHHHHHHHHHcCC
Confidence 8886 9999999999865 34589999987 5568888888877553
No 217
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=24.24 E-value=42 Score=25.31 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=27.1
Q ss_pred EEEecCCcccHHHHHHhhcc--CCcEEEeC--CCchHHHHHHH-h-hcCeeeecc
Q psy9357 47 IFVATDNNNLNEPLKEAFKR--TEIRIVPS--DQSPHVDLAIL-S-QANHFIGNC 95 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~--~~~~vv~l--~~~~~vDl~Il-~-~A~~FIGNc 95 (132)
||.+++-...+++|.+.|++ .+++|... .....+.++.. + .||+|++.-
T Consensus 9 v~~a~s~~~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~ 63 (295)
T 3cij_A 9 VFHAGSLTEPMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATAD 63 (295)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHCTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESS
T ss_pred EEecCCHHHHHHHHHHHHHHHCCCceEEEEeCcHHHHHHHHHhCCCCCCEEEEcC
Confidence 44333334456777777754 36665433 33445555555 3 478888643
No 218
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=24.22 E-value=97 Score=23.70 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=37.8
Q ss_pred cccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCcccHHHHHHhhccCCcEEEeC-CC-chHHHHHH
Q psy9357 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNLNEPLKEAFKRTEIRIVPS-DQ-SPHVDLAI 84 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~~~eLk~~l~~~~~~vv~l-~~-~~~vDl~I 84 (132)
.+.+||+.++.+++.+ . ++.-+|..| +..+.-.+|.+.+.. -.+..+ .+ .-.|+++.
T Consensus 147 ~~Dyps~~q~~~~l~~----~-~i~~ifavt~~~~~~Y~~l~~~i~~--s~v~~L~~dSsni~~li~ 206 (212)
T 2iue_A 147 EPDYQSVVQLASKLAE----N-NIQPIFVVPSRMVKTYEKLTTFIPK--LTIGELSDDSSNVAQLIR 206 (212)
T ss_dssp SSCCCCHHHHHHHHHH----H-TCEEEEEEEHHHHHHHHHHHHHSTT--CEEEEESSCCHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHh----c-CCcEEEEEccchhHHHHHHHHHccc--ceeeeecCCcHHHHHHHH
Confidence 5699999999888876 3 678888777 344456778888863 344445 44 34444443
No 219
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=24.20 E-value=1.4e+02 Score=18.68 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcccHH
Q psy9357 30 VVRQLKRVVREHGQIKYIFVATDNNNLNE 58 (132)
Q Consensus 30 I~~~ik~~~~~~~~lk~VfIaTD~~~~~~ 58 (132)
+.+.++..+...++...+..+++..+.++
T Consensus 14 ~~~~l~~~l~~~~~~~~~~~~~~~~~a~~ 42 (130)
T 1dz3_A 14 LVSLLDEYISSQPDMEVIGTAYNGQDCLQ 42 (130)
T ss_dssp HHHHHHHHHHTSTTEEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence 34444444443212333334444433333
No 220
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=24.19 E-value=1.2e+02 Score=26.11 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc---cHHHHHHhhccCCcEEEeC-----C----C---chHHHHHHHhhc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN---LNEPLKEAFKRTEIRIVPS-----D----Q---SPHVDLAILSQA 88 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~---~~~eLk~~l~~~~~~vv~l-----~----~---~~~vDl~Il~~A 88 (132)
.|+ ..+.+..+++.. +.+.|.|..|.+. .++.|++++++.|+.|+.. . + .+++..+--..+
T Consensus 105 ~p~---~~~a~~~l~~~~-gw~~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~ 180 (823)
T 3kg2_A 105 RPD---LKGALLSLIEYY-QWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKE 180 (823)
T ss_dssp SCC---CHHHHHHHHHHT-TCSEEEEEECGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTC
T ss_pred CCC---HHHHHHHHHHHC-CCCEEEEEEeCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCC
Confidence 577 345566667777 8999999886554 5778888998888877642 1 2 456666666788
Q ss_pred Ceeeecceee
Q psy9357 89 NHFIGNCISS 98 (132)
Q Consensus 89 ~~FIGNcvSS 98 (132)
|++|--|-..
T Consensus 181 ~vii~~~~~~ 190 (823)
T 3kg2_A 181 RRVILDCERD 190 (823)
T ss_dssp CEEEEECCHH
T ss_pred eEEEEECCHH
Confidence 8887655443
No 221
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=24.18 E-value=85 Score=24.44 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=39.0
Q ss_pred cccCCCHHHHHHHHHHHHH--HhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 21 ELCFPSVETVVRQLKRVVR--EHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 21 ~~C~Ps~~~I~~~ik~~~~--~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
...+.+.+++++.+..+.+ .. ++.-|||+|.+....+-.+++|+. |..|+.-
T Consensus 50 ~~~~~~~~~ll~~~~~l~~~~~~-~vD~V~I~tP~~~H~~~~~~al~a-GkhVl~E 103 (318)
T 3oa2_A 50 SEFFTEFEFFLDHASNLKRDSAT-ALDYVSICSPNYLHYPHIAAGLRL-GCDVICE 103 (318)
T ss_dssp CEEESSHHHHHHHHHHHTTSTTT-SCCEEEECSCGGGHHHHHHHHHHT-TCEEEEC
T ss_pred CcEECCHHHHHHhhhhhhhccCC-CCcEEEECCCcHHHHHHHHHHHHC-CCeEEEE
Confidence 3457788888876666553 44 899999999877777778888875 7777664
No 222
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=24.00 E-value=92 Score=24.20 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l 74 (132)
-||..++.+-++. +++. +++.||+-+-.++ ..+.|.+.-+..|++|+.+
T Consensus 195 eps~~~l~~l~~~-ik~~-~v~~if~e~~~~~~~~~~l~~~a~~~g~~v~~l 244 (282)
T 3mfq_A 195 EVANSDMIETVNL-IIDH-NIKAIFTESTTNPERMKKLQEAVKAKGGQVEVV 244 (282)
T ss_dssp CCCHHHHHHHHHH-HHHH-TCCEEECBTTSCTHHHHHHHHHHHTTSCCCEEE
T ss_pred CCCHHHHHHHHHH-HHHc-CCCEEEEeCCCChHHHHHHHHHHHhcCCceEEe
Confidence 4788877665555 4444 8999998774433 4666665555567766553
No 223
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=23.98 E-value=75 Score=23.66 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=32.5
Q ss_pred HHHHHHhhccCCcEEEeC---CC-----chHHHHHHHhhcCeeeecceeecchh
Q psy9357 57 NEPLKEAFKRTEIRIVPS---DQ-----SPHVDLAILSQANHFIGNCISSFTAF 102 (132)
Q Consensus 57 ~~eLk~~l~~~~~~vv~l---~~-----~~~vDl~Il~~A~~FIGNcvSSFTa~ 102 (132)
-.-|.++|++.|++++.+ || ...+..++..++|..|=++-+|.+.+
T Consensus 51 ~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~ 104 (185)
T 3rfq_A 51 GPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPR 104 (185)
T ss_dssp HHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCc
Confidence 345777788778877764 66 34455555468999999998888764
No 224
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=23.94 E-value=2.1e+02 Score=21.02 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=54.8
Q ss_pred cCCCHHHHHHHHHHHH-HHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEe---CC----C-chHHHHHHHhhcC
Q psy9357 23 CFPSVETVVRQLKRVV-REHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVP---SD----Q-SPHVDLAILSQAN 89 (132)
Q Consensus 23 C~Ps~~~I~~~ik~~~-~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~---l~----~-~~~vDl~Il~~A~ 89 (132)
..|+-....+.+-+.+ +.. +-++|.+.++.+.+ .+.++++|++.|++++. .+ + .+++..+.-.++|
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~-g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d 195 (346)
T 1usg_A 117 TAGLDSSQGPTAAKYILETV-KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID 195 (346)
T ss_dssp CSCCGGGHHHHHHHHHHHTT-CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCC
T ss_pred ccCChHHHHHHHHHHHHHhc-CCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCC
Confidence 4566666666666665 445 77888777754443 45577778777876653 21 2 4566666666778
Q ss_pred eeeecc-eeecchhhhhhhhcCCCCCCccc
Q psy9357 90 HFIGNC-ISSFTAFVKRHRDVKGLPSSFWA 118 (132)
Q Consensus 90 ~FIGNc-vSSFTa~V~reR~~~G~ps~F~g 118 (132)
..+-.+ -.....+++..|+ .|+...+.|
T Consensus 196 ~i~~~~~~~~a~~~~~~~~~-~g~~~~~~~ 224 (346)
T 1usg_A 196 FVYYGGYYPEMGQMLRQARS-VGLKTQFMG 224 (346)
T ss_dssp EEEEESCHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred EEEEcCcchHHHHHHHHHHH-cCCCCeEEe
Confidence 766544 2333445555554 454332443
No 225
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=23.80 E-value=66 Score=22.33 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=4.5
Q ss_pred ccCCCHHHH
Q psy9357 22 LCFPSVETV 30 (132)
Q Consensus 22 ~C~Ps~~~I 30 (132)
.|+||++++
T Consensus 59 ~~~~sl~el 67 (140)
T 1iuk_A 59 EAVASLLDL 67 (140)
T ss_dssp ECBSSGGGC
T ss_pred EecCCHHHC
Confidence 455555444
No 226
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=23.73 E-value=1.8e+02 Score=19.94 Aligned_cols=71 Identities=6% Similarity=-0.039 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC-CC------chHHHHHHHhhcCeeeecc
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS-DQ------SPHVDLAILSQANHFIGNC 95 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l-~~------~~~vDl~Il~~A~~FIGNc 95 (132)
+|+.++=.+.+..+++.. .-+.+-|=+......+.|.+.|...++.+..+ .+ ...++..--+..++.|.+-
T Consensus 15 ~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 15 CEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp CSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred cCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 345454556666777665 55677777777777888888888777766655 21 4455555556667776653
No 227
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=23.39 E-value=83 Score=20.49 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=12.0
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv 72 (132)
+|.|.-|.......|+..|...|+.++
T Consensus 16 ~iLivdd~~~~~~~l~~~L~~~g~~v~ 42 (143)
T 3m6m_D 16 RMLVADDHEANRMVLQRLLEKAGHKVL 42 (143)
T ss_dssp EEEEECSSHHHHHHHHHHHHC--CEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 344444444445555555544444443
No 228
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=23.18 E-value=1.6e+02 Score=20.29 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=21.6
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEE
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRI 71 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~v 71 (132)
.|+| .+.+..-+.+..+ . +++.+.+-+.. .-++|.++.++.|+++
T Consensus 75 i~vp-~~~v~~v~~~~~~-~-g~~~i~~~~~~--~~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 75 FVVP-PKVGLQVAKEAVE-A-GFKKLWFQPGA--ESEEIRRFLEKAGVEY 119 (138)
T ss_dssp ECSC-HHHHHHHHHHHHH-T-TCCEEEECTTS--CCHHHHHHHHHHTCEE
T ss_pred EEeC-HHHHHHHHHHHHH-c-CCCEEEEcCcc--HHHHHHHHHHHCCCEE
Confidence 4666 2444444444333 3 56666665532 2355555555444443
No 229
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=23.14 E-value=1.6e+02 Score=19.17 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=27.0
Q ss_pred cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEec
Q psy9357 17 VATEELCFPSVETVVRQLKRVVREHGQIKYIFVAT 51 (132)
Q Consensus 17 ~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT 51 (132)
.+|...| |-.+.|.++++..++.++++++|-|.-
T Consensus 49 ~lt~~~c-p~~~~l~~~i~~al~~l~gv~~v~V~l 82 (103)
T 1uwd_A 49 TMTTPMC-PLAGMILSDAEEAIKKIEGVNNVEVEL 82 (103)
T ss_dssp CCSSSCC-SSHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred EECCCCC-cHHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 4555556 678999999999999866899888765
No 230
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=23.02 E-value=1.4e+02 Score=21.41 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCC-cEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 30 VVRQLKRVVREHGQI-KYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 30 I~~~ik~~~~~~~~l-k~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
++..+-+.+... +. ..|+|.|+. +++.+.++..+++++.
T Consensus 29 li~~~i~~~~~~-~~~~~ivvv~~~----~~i~~~~~~~~~~~~~ 68 (245)
T 1h7e_A 29 MIQHVYERALQV-AGVAEVWVATDD----PRVEQAVQAFGGKAIM 68 (245)
T ss_dssp HHHHHHHHHHTC-TTCCEEEEEESC----HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhC-CCCCeEEEECCc----HHHHHHHHHcCCeEEe
Confidence 444444445555 54 899999975 4555555555666554
No 231
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=22.97 E-value=1.6e+02 Score=20.88 Aligned_cols=46 Identities=17% Similarity=0.038 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCccc--HHHHHHhhccCCcEEEe
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNNL--NEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~--~~eLk~~l~~~~~~vv~ 73 (132)
.+-+.++..+.++...+ +++. |-||+... -..+++.++..|++...
T Consensus 93 ~~~~~~~~~l~~~~~~~-g~~~--i~sDnG~~F~s~~~~~~~~~~gi~~~~ 140 (210)
T 3f9k_A 93 ESGRQTALFLLKLASRW-PITH--LHTDNGANFTSQEVKMVAWWIGIEQSF 140 (210)
T ss_dssp CCHHHHHHHHHHHHTTS-CCSE--EEECCCTTTSSHHHHHHHHHHTCEEEE
T ss_pred cchHHHHHHHHHHHHHc-CCCE--EEeCCCchhhHHHHHHHHHHCCCceee
Confidence 46788888888888887 8875 78998763 35677888777886654
No 232
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=22.93 E-value=1.7e+02 Score=22.82 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=31.8
Q ss_pred ccHHHHHHhhccCCcEEEeC-CCchHHH--HHHHhhcCeeeecceeec-------------chhhhhhhhcCCCC
Q psy9357 55 NLNEPLKEAFKRTEIRIVPS-DQSPHVD--LAILSQANHFIGNCISSF-------------TAFVKRHRDVKGLP 113 (132)
Q Consensus 55 ~~~~eLk~~l~~~~~~vv~l-~~~~~vD--l~Il~~A~~FIGNcvSSF-------------Ta~V~reR~~~G~p 113 (132)
+.+.++.+++++.+++.+.+ .+..-.+ ..|...+.-|| -|+|.- ...|++-|...+.|
T Consensus 131 ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfi-y~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~P 204 (271)
T 1ujp_A 131 DEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFV-YAVSVTGVTGMRERLPEEVKDLVRRIKARTALP 204 (271)
T ss_dssp GGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCE-EEECC------------CCHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCE-EEEecCcccCCCCCCCccHHHHHHHHHhhcCCC
Confidence 34666666666666766655 2211122 55666677777 343211 24666777766655
No 233
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=22.91 E-value=1.9e+02 Score=21.71 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEe----cCCcccH--------HHHHHhhccCCcEEEeC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVA----TDNNNLN--------EPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIa----TD~~~~~--------~eLk~~l~~~~~~vv~l 74 (132)
.|+++++++++. + . |.++|.|. ...++.- ++.++.|.+.|+++..+
T Consensus 186 ~P~~~~~l~~l~---~-~-G~~~v~v~P~~l~~G~h~~~di~~~~~~~~~~~~~~~g~~~~~~ 243 (269)
T 2xvy_A 186 SPSFDNVMAELD---V-R-KAKRVWLMPLMAVAGDHARNDMAGDEDDSWTSQLARRGIEAKPV 243 (269)
T ss_dssp SSCHHHHHHHHH---H-H-TCSEEEEEEESSSCCHHHHTTTTCSSTTSHHHHHHHTTCEEEEC
T ss_pred CCCHHHHHHHHH---H-C-CCCEEEEECCccccccchhhhcCCCchhHHHHHHHHcCcEEEEe
Confidence 588888777664 2 2 67888777 2222211 34677777777777643
No 234
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=22.84 E-value=70 Score=20.89 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCC
Q psy9357 27 VETVVRQLKRVVREHGQIKYIFVATDN 53 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~~lk~VfIaTD~ 53 (132)
-..+.+.++..++.. +.+ |..+++.
T Consensus 16 ~~~~~~~l~~~L~~~-g~~-v~~~~~~ 40 (154)
T 2rjn_A 16 EQPILNSLKRLIKRL-GCN-IITFTSP 40 (154)
T ss_dssp CHHHHHHHHHHHHTT-TCE-EEEESCH
T ss_pred CHHHHHHHHHHHHHc-CCe-EEEeCCH
Confidence 345556666666665 543 4445554
No 235
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=22.71 E-value=57 Score=26.76 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCC---CcEEEEecCCcccHHHHHHhhccCCcEEEeC------CCc----hHHHHHHHhh---cCeee
Q psy9357 29 TVVRQLKRVVREHGQ---IKYIFVATDNNNLNEPLKEAFKRTEIRIVPS------DQS----PHVDLAILSQ---ANHFI 92 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~---lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l------~~~----~~vDl~Il~~---A~~FI 92 (132)
.+++++.+.++++ + .++++|-||..-.-..|.+.|+..++.++.+ |.. ..++++--.+ +|..|
T Consensus 36 g~l~~l~~~l~~~-g~~~~~~~liVtd~~~~~~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~II 114 (375)
T 3rf7_A 36 GSFVQLDTVLEQE-RTDANDFVVFLVDDVHQHKPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVV 114 (375)
T ss_dssp TGGGGHHHHHHTT-CCSTTCCEEEEEEGGGTTSHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEE
T ss_pred CHHHHHHHHHHHh-cccCCCeEEEEECchhhhhHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEE
Confidence 3456677777776 4 3778788875533335777787656554432 222 3444444444 88888
Q ss_pred ecce
Q psy9357 93 GNCI 96 (132)
Q Consensus 93 GNcv 96 (132)
|=|-
T Consensus 115 avGG 118 (375)
T 3rf7_A 115 GLGG 118 (375)
T ss_dssp EEES
T ss_pred EeCC
Confidence 7543
No 236
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=22.66 E-value=1.8e+02 Score=22.59 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l 74 (132)
-||..++.+-++. +++. +++.||+-+-.+. ..+.|. ++.|++++.+
T Consensus 211 eps~~~l~~l~~~-ik~~-~v~~if~e~~~~~~~~~~la---~~~g~~v~~l 257 (286)
T 3gi1_A 211 EPSPRQLKEIQDF-VKEY-NVKTIFAEDNVNPKIAHAIA---KSTGAKVKTL 257 (286)
T ss_dssp -CCHHHHHHHHHH-HHHT-TCCEEEECTTSCTHHHHHHH---HTTTCEEEEC
T ss_pred CCCHHHHHHHHHH-HHHc-CCCEEEEeCCCChHHHHHHH---HHhCCeEEEe
Confidence 5777777655554 4444 8999998874332 333332 3458888876
No 237
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=22.58 E-value=25 Score=29.26 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.4
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+||| |=..||||++|.
T Consensus 167 ~~~ld~~Lvl~ADH--g~n~ST~aaRv~ 192 (373)
T 1vgp_A 167 SKAMDVTLILHIDH--EMNASTFASLVV 192 (373)
T ss_dssp HHHHHHHHHTTSCC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC--CCchHHHHHHHH
Confidence 78899999999999 445899999874
No 238
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=22.56 E-value=2.6e+02 Score=21.26 Aligned_cols=66 Identities=6% Similarity=0.079 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhC--CCcEEEEecCCcccHHHHHHhhccCCcEEE-eCCC-chHHHHHHHhhcCeee
Q psy9357 27 VETVVRQLKRVVREHG--QIKYIFVATDNNNLNEPLKEAFKRTEIRIV-PSDQ-SPHVDLAILSQANHFI 92 (132)
Q Consensus 27 ~~~I~~~ik~~~~~~~--~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv-~l~~-~~~vDl~Il~~A~~FI 92 (132)
...+...+.+..+.++ .-..|.|.-|+.....-|+..|+..|+.|+ ...+ ..+++++--.+-|..|
T Consensus 141 ~~tVks~l~rA~~~Lr~~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl 210 (286)
T 3n0r_A 141 FGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVL 210 (286)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHHhhhhccCCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEE
Confidence 4555555555555441 234788888888889999999998899888 4443 4555554444444443
No 239
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=22.47 E-value=1.4e+02 Score=22.39 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCcEEEEecCC-----cccHHHHHHhhccCCcEEEeC--CCchHHHHHHHhhcCeeeecceeec
Q psy9357 31 VRQLKRVVREHGQIKYIFVATDN-----NNLNEPLKEAFKRTEIRIVPS--DQSPHVDLAILSQANHFIGNCISSF 99 (132)
Q Consensus 31 ~~~ik~~~~~~~~lk~VfIaTD~-----~~~~~eLk~~l~~~~~~vv~l--~~~~~vDl~Il~~A~~FIGNcvSSF 99 (132)
...+++.++. +.+-+||-|.. +.++...+++|++.|++++.+ .+.+ ...+..||..|=.+-.++
T Consensus 21 ~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~---~~~l~~ad~I~lpGG~~~ 91 (229)
T 1fy2_A 21 LPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADP---LAAIEKAEIIIVGGGNTF 91 (229)
T ss_dssp HHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCH---HHHHHHCSEEEECCSCHH
T ss_pred HHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccH---HHHHhcCCEEEECCCcHH
Confidence 3334555542 67889998764 247888999999999877665 2221 123445665554443433
No 240
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=22.44 E-value=1e+02 Score=20.25 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=28.6
Q ss_pred cccccccCCCHHHHHHHHHHHHHHhCCCcEEEEec-CCccc
Q psy9357 17 VATEELCFPSVETVVRQLKRVVREHGQIKYIFVAT-DNNNL 56 (132)
Q Consensus 17 ~lt~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaT-D~~~~ 56 (132)
.+|...| |-.+.|.++++..++.++++++|-|-- ....|
T Consensus 48 ~lt~~~c-p~~~~l~~~i~~al~~l~gv~~V~V~l~~~p~W 87 (103)
T 3cq1_A 48 TLTTPGC-PLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPW 87 (103)
T ss_dssp CCSSSSC-CSSCHHHHHHHHHHHTSTTCCEEEEEECCSSCC
T ss_pred EECCCCC-cHHHHHHHHHHHHHHhCCCceeEEEEEecCCCC
Confidence 4455555 668899999999999866899888765 34445
No 241
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=22.41 E-value=26 Score=29.28 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.0
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+|||= +| .||||++|.
T Consensus 175 ~~~ld~~Lvl~ADHg-~n-~St~aarv~ 200 (385)
T 2ifc_A 175 IDAMNTALILYTDHE-VP-ASTTAGLVA 200 (385)
T ss_dssp HHHHHHHHHHTSCCS-SC-HHHHHHHHH
T ss_pred HHHHHHHHhHhcCCC-cc-HHHHHHHHH
Confidence 688999999999993 35 599999984
No 242
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=22.04 E-value=1.7e+02 Score=23.50 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=45.0
Q ss_pred cccCCC----HHHHHHHHHHHHHHhCCCcEEEEec-CC--------------cccHHHHHHhhccCCcEEEeC-CCchHH
Q psy9357 21 ELCFPS----VETVVRQLKRVVREHGQIKYIFVAT-DN--------------NNLNEPLKEAFKRTEIRIVPS-DQSPHV 80 (132)
Q Consensus 21 ~~C~Ps----~~~I~~~ik~~~~~~~~lk~VfIaT-D~--------------~~~~~eLk~~l~~~~~~vv~l-~~~~~v 80 (132)
.-|... .-++++++++...++ ++.-||=++ |. ..-+..|+++.++.|+.+++- -|..++
T Consensus 23 GPCsie~~~~~~e~A~~lk~~~~~~-~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~tev~d~~~v 101 (288)
T 3tml_A 23 GTCVVESEQMTIDTAGRLKEICEKL-NVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLTDVHSIDEI 101 (288)
T ss_dssp ECSBCCCHHHHHHHHHHHHHHHHHH-TCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCEEEECCSGGGH
T ss_pred eCCcCCCHHHHHHHHHHHHHHHHHc-CCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 346553 235567788777788 888899875 53 123555777776778888886 456666
Q ss_pred HHHHHhhcCee-eecc
Q psy9357 81 DLAILSQANHF-IGNC 95 (132)
Q Consensus 81 Dl~Il~~A~~F-IGNc 95 (132)
|.+ ...+|.+ ||..
T Consensus 102 ~~l-~~~vd~lkIgA~ 116 (288)
T 3tml_A 102 EQV-ASVVDVLQTPAF 116 (288)
T ss_dssp HHH-HHHCSEEEECGG
T ss_pred HHH-HHhCCEEEECcc
Confidence 654 3446654 4443
No 243
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.01 E-value=1.1e+02 Score=19.04 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=9.1
Q ss_pred EEEecCCcccHHHHHHhhccCC
Q psy9357 47 IFVATDNNNLNEPLKEAFKRTE 68 (132)
Q Consensus 47 VfIaTD~~~~~~eLk~~l~~~~ 68 (132)
|.|..|.....+.|+..|...+
T Consensus 5 ilivdd~~~~~~~l~~~L~~~~ 26 (140)
T 1k68_A 5 IFLVEDNKADIRLIQEALANST 26 (140)
T ss_dssp EEEECCCHHHHHHHHHHHHTCS
T ss_pred EEEEeCCHHHHHHHHHHHHhcC
Confidence 3344444444444444444333
No 244
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=21.77 E-value=72 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.4
Q ss_pred EEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+|.|++|.. +.-++|+++|++.|++|+-+
T Consensus 22 kIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 52 (169)
T 3ph3_A 22 KIGIGSDHGGYNLKREIADFLKKRGYEVIDF 52 (169)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEeCchHHHHHHHHHHHHHHCCCEEEEc
Confidence 599999976 46788999999889999876
No 245
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=21.69 E-value=45 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=22.9
Q ss_pred ccHHHHHHhhcc--CCcEEEeC--CCchHHHHHHH-h-hcCeeeecc
Q psy9357 55 NLNEPLKEAFKR--TEIRIVPS--DQSPHVDLAIL-S-QANHFIGNC 95 (132)
Q Consensus 55 ~~~~eLk~~l~~--~~~~vv~l--~~~~~vDl~Il-~-~A~~FIGNc 95 (132)
..+++|-+.|++ .+++|.-. .....+.++.. + .||+|++.-
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~ 63 (296)
T 3cfx_A 17 VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASAD 63 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESS
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECC
Confidence 456677777754 25655433 33445555554 3 478887643
No 246
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=21.67 E-value=1.5e+02 Score=20.48 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCcEEEEecCCccc---HHHHHHhhccCCcEEEeC
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNL---NEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~---~~eLk~~l~~~~~~vv~l 74 (132)
.+..++. . +..-|.|.|+.... -++++++|++.|+.+...
T Consensus 53 ~l~~ll~-~-~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m 95 (122)
T 2ab1_A 53 DVKEVVE-K-GVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVL 95 (122)
T ss_dssp HHHHHHT-T-CCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhh-C-CCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEe
Confidence 4444444 3 78999999977654 489999999988877765
No 247
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=21.67 E-value=27 Score=29.73 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.1
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
.-.+|++..-+|||= +| .||||++|.
T Consensus 224 ~~~ld~~LiLhADHe-~N-aSTftaRvv 249 (436)
T 2h12_A 224 ARAMNRILILHADHE-QN-ASTSTVRLA 249 (436)
T ss_dssp HHHHHHHHHHHSCCS-SC-HHHHHHHHH
T ss_pred HHHHHhhheeecCCC-Cc-hHHHHHHHH
Confidence 678999999999993 35 799999984
No 248
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=21.64 E-value=72 Score=21.40 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy9357 25 PSVETVVRQLKRVVREH 41 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~ 41 (132)
.|.++|++.|++|+.+-
T Consensus 62 ~spE~Iv~~ik~wRa~~ 78 (86)
T 1fr2_A 62 DSPSGIVNTVKQWRAAN 78 (86)
T ss_dssp CSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 47899999999999985
No 249
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=21.52 E-value=1.4e+02 Score=19.30 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=14.2
Q ss_pred EEEEecCCcccHHHHHHhhcc-CCcEEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKR-TEIRIV 72 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~-~~~~vv 72 (132)
+|.|..|.....+.|+..|.. .++.++
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~~~~~v~ 34 (153)
T 3cz5_A 7 RIMLVDDHPIVREGYRRLIERRPGYAVV 34 (153)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSTTEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhhCCCcEEE
Confidence 455555555555555555554 345544
No 250
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=21.49 E-value=52 Score=20.21 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=19.2
Q ss_pred EEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
+|.|..|.......|+..|...++.+...
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~ 33 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTF 33 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEEC
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEe
Confidence 46666676667777777777666665544
No 251
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=21.47 E-value=1.7e+02 Score=18.90 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=37.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHhCCCcEEEEecCCcccHHHHHHhhccCCcEEEeC
Q psy9357 20 EELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 20 ~~~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eLk~~l~~~~~~vv~l 74 (132)
..-|-|.. .....+.++.+++ +++-|+|..|...-.+++++.+++.++..-.+
T Consensus 39 ~~~C~~C~-~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~ 91 (154)
T 3ia1_A 39 ASWCTVCK-AEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLL 91 (154)
T ss_dssp CTTCHHHH-HHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECB
T ss_pred cccChhHH-HHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccc
Confidence 34455443 3456677777787 89999999986667888888888776644433
No 252
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=21.38 E-value=1.7e+02 Score=18.85 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=11.8
Q ss_pred HHHHHHHHHhCCCcEEEEecCCc
Q psy9357 32 RQLKRVVREHGQIKYIFVATDNN 54 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaTD~~ 54 (132)
+++|+++++. ++...+|--|.+
T Consensus 18 ~~aK~~L~~~-gi~y~~idi~~d 39 (92)
T 2lqo_A 18 LRLKTALTAN-RIAYDEVDIEHN 39 (92)
T ss_dssp HHHHHHHHHT-TCCCEEEETTTC
T ss_pred HHHHHHHHhc-CCceEEEEcCCC
Confidence 4455555555 555555554443
No 253
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=21.33 E-value=1.4e+02 Score=22.80 Aligned_cols=27 Identities=19% Similarity=0.066 Sum_probs=20.8
Q ss_pred HHhhcCeeeecceeecchhhhhhhhcCCCCC
Q psy9357 84 ILSQANHFIGNCISSFTAFVKRHRDVKGLPS 114 (132)
Q Consensus 84 Il~~A~~FIGNcvSSFTa~V~reR~~~G~ps 114 (132)
++.+||.||..+-+ ....|-...|.|.
T Consensus 283 ll~~ad~~v~~~G~----~t~~Ea~~~G~P~ 309 (391)
T 3tsa_A 283 FLRTCELVICAGGS----GTAFTATRLGIPQ 309 (391)
T ss_dssp TGGGCSEEEECCCH----HHHHHHHHTTCCE
T ss_pred HHhhCCEEEeCCCH----HHHHHHHHhCCCE
Confidence 44999999987653 3457889999985
No 254
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=21.18 E-value=1.2e+02 Score=21.55 Aligned_cols=45 Identities=9% Similarity=-0.043 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHhC--CCcEEEEecCCcccHH-HHHHhhccCC
Q psy9357 24 FPSVETVVRQLKRVVREHG--QIKYIFVATDNNNLNE-PLKEAFKRTE 68 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~--~lk~VfIaTD~~~~~~-eLk~~l~~~~ 68 (132)
-|++++++.++..+++... .-+.+.|++++.--+. =|++.++..+
T Consensus 82 ~~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~ 129 (204)
T 1w0h_A 82 ADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSR 129 (204)
T ss_dssp SBCHHHHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhC
Confidence 4899999999999999751 1356788998754454 5777776543
No 255
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=21.15 E-value=2.6e+02 Score=20.82 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=56.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEEEEecC-CcccHHHHHHhhcc-CCcEEEe---C----CC-chHHHHHHHhhcCee
Q psy9357 22 LCFPSVETVVRQLKRVVREHGQIKYIFVATD-NNNLNEPLKEAFKR-TEIRIVP---S----DQ-SPHVDLAILSQANHF 91 (132)
Q Consensus 22 ~C~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD-~~~~~~eLk~~l~~-~~~~vv~---l----~~-~~~vDl~Il~~A~~F 91 (132)
+-.|+...-.+.+..++.+..+-+.+.+..| ...|-..+.+.|.+ .+.++|. + .| .+++..+--..+|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v 200 (353)
T 4gnr_A 121 IGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDAI 200 (353)
T ss_dssp ECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTSCCSEE
T ss_pred ccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEE
Confidence 3446655555555555554325566666664 44455555555543 3566664 2 23 788999888999988
Q ss_pred eecceeecch-hhhhhhhcCCCCCCcccC
Q psy9357 92 IGNCISSFTA-FVKRHRDVKGLPSSFWAF 119 (132)
Q Consensus 92 IGNcvSSFTa-~V~reR~~~G~ps~F~g~ 119 (132)
+..+...-.. +++.-|+ .|+...+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 228 (353)
T 4gnr_A 201 VVPGYYNEAGKIVNQARG-MGIDKPIVGG 228 (353)
T ss_dssp ECCSCHHHHHHHHHHHHH-TTCCSCEEEC
T ss_pred EEecCcHHHHHHHHHHHH-cCCCCcEEEe
Confidence 7666544333 4444444 5765544443
No 256
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=21.14 E-value=28 Score=28.92 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.3
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+||| |=..||||+++.
T Consensus 173 ~~~ld~~Lvl~ADH--g~n~St~aarv~ 198 (378)
T 1a59_A 173 VEAFNVSMILYAEH--SFNASTFTARVI 198 (378)
T ss_dssp HHHHHHHHHHHSCC--SSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCchHHHHHHH
Confidence 78899999999999 445899999873
No 257
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.61 E-value=20 Score=24.80 Aligned_cols=51 Identities=14% Similarity=0.301 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCcEEEEec-CCcc-cHHHHHHhhccCCcEEEeCCCchHHHHHH
Q psy9357 32 RQLKRVVREHGQIKYIFVAT-DNNN-LNEPLKEAFKRTEIRIVPSDQSPHVDLAI 84 (132)
Q Consensus 32 ~~ik~~~~~~~~lk~VfIaT-D~~~-~~~eLk~~l~~~~~~vv~l~~~~~vDl~I 84 (132)
..+.+.++.. ++. |||.- |.++ -++|--+.|+..|++|.+.++.--+|-||
T Consensus 17 eelarkikde-gle-vyillkdkdekrleekiqklksqgfevrkvkddddidkwi 69 (110)
T 2lta_A 17 EELARKIKDE-GLE-VYILLKDKDEKRLEEKIQKLKSQGFEVRKVKDDDDIDKWI 69 (110)
Confidence 3333334443 554 66666 7765 35555556666678887776666677766
No 258
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=21.09 E-value=28 Score=28.98 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=21.9
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+|||= +| .||||++|.
T Consensus 170 ~~~ld~~Lvl~ADHg-~n-~St~aaRv~ 195 (377)
T 1o7x_A 170 INAMDKALILYTDHE-VP-ASTTAALVA 195 (377)
T ss_dssp HHHHHHHHHHHSCCS-CC-HHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CC-hHHHHHHHH
Confidence 678999999999993 35 599999984
No 259
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=21.08 E-value=28 Score=28.97 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.4
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+||| |=..||||++|.
T Consensus 171 ~~~ld~~Lvl~ADH--g~n~St~aaRv~ 196 (377)
T 1iom_A 171 ARLMDAALILHAEH--GFNASTFTAIAA 196 (377)
T ss_dssp HHHHHHHHHHHSCC--SSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC--CCCchHHHHHHH
Confidence 68899999999999 445899999874
No 260
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.06 E-value=1.3e+02 Score=19.75 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=33.3
Q ss_pred ccccccCC--CHHHHHHHHHHHHHHhCCCcEEEEec-CCc--ccHHHHHHhhccCCcEEE
Q psy9357 18 ATEELCFP--SVETVVRQLKRVVREHGQIKYIFVAT-DNN--NLNEPLKEAFKRTEIRIV 72 (132)
Q Consensus 18 lt~~~C~P--s~~~I~~~ik~~~~~~~~lk~VfIaT-D~~--~~~~eLk~~l~~~~~~vv 72 (132)
.|-..-.| .....++++... +.+.+...++| +.. ..+.+|++.|+..|++++
T Consensus 55 ty~~g~~p~~~~~~fl~~l~~~---l~~k~~~~f~t~g~~~~~a~~~l~~~l~~~G~~~v 111 (138)
T 5nul_A 55 AMTDEVLEESEFEPFIEEISTK---ISGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVV 111 (138)
T ss_dssp CBTTTBCCTTTHHHHHHHHGGG---CTTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEEC
T ss_pred ccCCCCCChHHHHHHHHHHHhh---cCCCEEEEEEecCCCCChHHHHHHHHHHHCCCEEE
Confidence 33344456 477777776543 32455555666 543 468999999998887766
No 261
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=20.98 E-value=1e+02 Score=21.90 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=23.0
Q ss_pred HHHhhccCCcEEEeC---CC-----chHHHHHHHh-hcCeeeecceeecc
Q psy9357 60 LKEAFKRTEIRIVPS---DQ-----SPHVDLAILS-QANHFIGNCISSFT 100 (132)
Q Consensus 60 Lk~~l~~~~~~vv~l---~~-----~~~vDl~Il~-~A~~FIGNcvSSFT 100 (132)
|.++|++.|++++.. +| ...+..++-. ++|+.|=++-+|.+
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred HHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 555666666655543 55 2333333332 57777777777665
No 262
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=20.96 E-value=2.1e+02 Score=22.92 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=43.3
Q ss_pred cccCCCHH----HHHHHHHHHHHHhCCCcEEEEec-CC--------------cccHHHHHHhhccCCcEEEeC-CCchHH
Q psy9357 21 ELCFPSVE----TVVRQLKRVVREHGQIKYIFVAT-DN--------------NNLNEPLKEAFKRTEIRIVPS-DQSPHV 80 (132)
Q Consensus 21 ~~C~Ps~~----~I~~~ik~~~~~~~~lk~VfIaT-D~--------------~~~~~eLk~~l~~~~~~vv~l-~~~~~v 80 (132)
--|...-+ +++++++++-.++ ++.-||-++ |+ ..-+..|+++.++.|+.+++- -|..++
T Consensus 26 GPCsie~~e~~~~~A~~lk~~~~~~-~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~Tev~d~~~v 104 (285)
T 3sz8_A 26 GINVLESLDFTLDVCGEYVAVTRKL-GIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQA 104 (285)
T ss_dssp EEEECCCHHHHHHHHHHHHHHHHHH-TCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEEEECCSGGGH
T ss_pred eCCcCCCHHHHHHHHHHHHHHHHhh-eeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 34655433 4566777777777 788899886 64 123555777776778888875 455666
Q ss_pred HHHHHhhcCee
Q psy9357 81 DLAILSQANHF 91 (132)
Q Consensus 81 Dl~Il~~A~~F 91 (132)
|.+ ...+|++
T Consensus 105 ~~l-~~~vd~l 114 (285)
T 3sz8_A 105 APV-AEIADVL 114 (285)
T ss_dssp HHH-HTTCSEE
T ss_pred HHH-HHhCCEE
Confidence 654 3445544
No 263
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=20.80 E-value=1.8e+02 Score=22.16 Aligned_cols=68 Identities=7% Similarity=-0.049 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEecCCcc----cHHHHHHhhccCCcEEEeC-------CC-chHHHHHHHhh----
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPS-------DQ-SPHVDLAILSQ---- 87 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l-------~~-~~~vDl~Il~~---- 87 (132)
.|+..+....+..++++. +. +|+|..+.+. ..+.++++|++.|++|+.. .| .+++..+.-..
T Consensus 123 ~~~~~~~~~~~~~~~~~~-~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~l~~i~~~~~~~~ 200 (374)
T 3n0x_A 123 GRNSSQDAISNAVAIGKQ-GV-TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKP 200 (374)
T ss_dssp SCCHHHHHHHHHHHHCCT-TE-EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCHHHHHHHHHHHTTCS
T ss_pred cCCchhHHHHHHHHHhcc-CC-EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHHHHHHHHHhcCCCCC
Confidence 456555555555666655 54 6776664333 4677888888888888742 23 68888888888
Q ss_pred -cCeeee
Q psy9357 88 -ANHFIG 93 (132)
Q Consensus 88 -A~~FIG 93 (132)
+|+.+-
T Consensus 201 ~~d~v~~ 207 (374)
T 3n0x_A 201 GKKIIWV 207 (374)
T ss_dssp SEEEEEE
T ss_pred CCCEEEE
Confidence 786543
No 264
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=20.79 E-value=1.5e+02 Score=24.40 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=44.5
Q ss_pred CCcEEEEecCCcc----cHHHHHHhhccCCcEEEeCC--C---------chHHHHHHHhhcCeeeecceeecchhhhhh-
Q psy9357 43 QIKYIFVATDNNN----LNEPLKEAFKRTEIRIVPSD--Q---------SPHVDLAILSQANHFIGNCISSFTAFVKRH- 106 (132)
Q Consensus 43 ~lk~VfIaTD~~~----~~~eLk~~l~~~~~~vv~l~--~---------~~~vDl~Il~~A~~FIGNcvSSFTa~V~re- 106 (132)
+.+.|+++.|++. ...++.+.|....+.++.+| | ...+.. ++..|.-+.-..+-++.....+.
T Consensus 135 ~~~~ivl~~D~D~aG~~aa~~~~~~l~~~~~~~~~~p~kD~nd~l~~~g~~~~~~-~i~~a~~~~~~~i~~~~~~~~~i~ 213 (503)
T 1q57_A 135 QFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLPCKDANECHLNGHDREIME-QVWNAGPWIPDGVVSALSLRERIR 213 (503)
T ss_dssp TEEEEEEECCSSHHHHHHHHHHHHHSCGGGEEECCCSSSSHHHHHTTSCHHHHHH-HHTTCCCCCCSSEEEGGGGHHHHH
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhcccCcEEEEeCCCCCHHHHHHhcCHHHHHH-HHHhcCCCCHHHhcChHHHHHHHH
Confidence 4689999999997 45666666665445555542 3 122322 34566666555555555554432
Q ss_pred -----hhcCCCCC-CcccCC
Q psy9357 107 -----RDVKGLPS-SFWAFP 120 (132)
Q Consensus 107 -----R~~~G~ps-~F~g~~ 120 (132)
....|.|| -|-++|
T Consensus 214 ~~~~~~~~~~i~t~G~~~LD 233 (503)
T 1q57_A 214 EHLSSEESVGLLFSGCTGIN 233 (503)
T ss_dssp HHHHHSCTTCSCCSSCTTHH
T ss_pred hhhcccccCCccccchhhhh
Confidence 23557777 565443
No 265
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=20.71 E-value=88 Score=19.96 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=17.8
Q ss_pred cEEEEecCCcccHHHHHHhhccCCcEEEe
Q psy9357 45 KYIFVATDNNNLNEPLKEAFKRTEIRIVP 73 (132)
Q Consensus 45 k~VfIaTD~~~~~~eLk~~l~~~~~~vv~ 73 (132)
.+|.|..|.......|+..|...|+.|+.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 35 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQC 35 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEE
Confidence 45666666666666666666665665553
No 266
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=20.67 E-value=29 Score=28.82 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.4
Q ss_pred chHHHHHHHhhcCeeeecceeecchhhh
Q psy9357 77 SPHVDLAILSQANHFIGNCISSFTAFVK 104 (132)
Q Consensus 77 ~~~vDl~Il~~A~~FIGNcvSSFTa~V~ 104 (132)
...+|++..-+||| |=..||||+++.
T Consensus 170 ~~~ld~~Lvl~aDH--g~n~St~aarv~ 195 (371)
T 1aj8_A 170 EKAMDVALILYAEH--EINASTLAVMTV 195 (371)
T ss_dssp HHHHHHHHHHHSCC--SSCHHHHHHHHH
T ss_pred HHHHHHHHhHhcCC--CCChhHHHHHHH
Confidence 78899999999999 445899999874
No 267
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.51 E-value=64 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=11.4
Q ss_pred EEEEecCCcccHHHHHHhhcc-CCcEEE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKR-TEIRIV 72 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~-~~~~vv 72 (132)
+|.|..|.......|+..|.. .+++|+
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~~~~~v~ 33 (140)
T 3lua_A 6 TVLLIDYFEYEREKTKIIFDNIGEYDFI 33 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhccCccEE
Confidence 344444444444444444444 344333
No 268
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}
Probab=20.45 E-value=1.3e+02 Score=20.57 Aligned_cols=25 Identities=0% Similarity=0.217 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEEec
Q psy9357 24 FPSVETVVRQLKRVVREHGQIKYIFVAT 51 (132)
Q Consensus 24 ~Ps~~~I~~~ik~~~~~~~~lk~VfIaT 51 (132)
+++.+++.+++.+.+++. +..++||
T Consensus 2 m~~~~~l~~~~~~~l~~~---~~~~LaT 26 (147)
T 3dmb_A 2 MADPKELQDKFWKALKSD---RTVMLGL 26 (147)
T ss_dssp TTSHHHHHHHHHHHHHHH---CEEEEEE
T ss_pred CCChHHHHHHHHHHHhcC---CEEEEEE
Confidence 467789999999999976 7788888
No 269
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=20.40 E-value=1.1e+02 Score=20.48 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecC---CcccHHHHHHhhccCCcEEEeC
Q psy9357 29 TVVRQLKRVVREHGQIKYIFVATD---NNNLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 29 ~I~~~ik~~~~~~~~lk~VfIaTD---~~~~~~eLk~~l~~~~~~vv~l 74 (132)
.+.+.+.+.+..- -++|+|++- .+..++.|.++.++ |++|.-+
T Consensus 14 ~~~~~~~~~i~~A--~~~I~i~~~~~~~~~i~~aL~~a~~r-GV~Vril 59 (155)
T 1byr_A 14 SARVLVLSAIDSA--KTSIRMMAYSFTAPDIMKALVAAKKR-GVDVKIV 59 (155)
T ss_dssp HHHHHHHHHHHHC--SSEEEEEESSBCCHHHHHHHHHHHHT-TCEEEEE
T ss_pred cHHHHHHHHHHHH--hhEEEEEEEEeCCHHHHHHHHHHHHC-CCEEEEE
Confidence 4555555555542 256776662 22344555555543 5554433
No 270
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.40 E-value=1.5e+02 Score=20.64 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEecCCcccHHHH
Q psy9357 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPL 60 (132)
Q Consensus 28 ~~I~~~ik~~~~~~~~lk~VfIaTD~~~~~~eL 60 (132)
..+...++..+... +.. |..+++..+.++.+
T Consensus 14 ~~~~~~l~~~L~~~-g~~-v~~~~~~~~al~~~ 44 (230)
T 2oqr_A 14 ESLADPLAFLLRKE-GFE-ATVVTDGPAALAEF 44 (230)
T ss_dssp HHHHHHHHHHHHHT-TCE-EEEECSHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCE-EEEECCHHHHHHHH
Confidence 44555666666665 554 44555554444433
No 271
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=20.33 E-value=2.2e+02 Score=22.18 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCcEEEEecCCccc----HHHHHHhhccCCcEEEeC----C---CchHHHHHHHhhc
Q psy9357 33 QLKRVVREHGQIKYIFVATDNNNL----NEPLKEAFKRTEIRIVPS----D---QSPHVDLAILSQA 88 (132)
Q Consensus 33 ~ik~~~~~~~~lk~VfIaTD~~~~----~~eLk~~l~~~~~~vv~l----~---~~~~vDl~Il~~A 88 (132)
++.+-+++. +++-|-+||+++-+ -.=|.+.|+..+++|-++ | +.-.+|..-|++|
T Consensus 140 ~L~~Ri~~~-~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~~vkvTRiA~GiPvGgeLEY~D~~TL~~A 205 (212)
T 3vdp_A 140 ELLERVRDG-SVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKA 205 (212)
T ss_dssp HHHHHHHHS-CCSEEEECCCSSHHHHHHHHHHHHHHTTTTCEEEECCBSBCTTCCGGGSCHHHHHHH
T ss_pred HHHHHHhcC-CCcEEEEECCCCccHHHHHHHHHHHhhhcCCCeeeccccCcCCcchhhccHHHHHHH
Confidence 333334454 89999999987642 233666777778888775 3 3566777766665
No 272
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.33 E-value=2.3e+02 Score=19.94 Aligned_cols=48 Identities=8% Similarity=0.194 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCcc-cHHHHHHhhccCCcEEEeC
Q psy9357 26 SVETVVRQLKRVVREHGQIKYIFVATDNNN-LNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 26 s~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~~eLk~~l~~~~~~vv~l 74 (132)
.-++.++..-+++.++ +-+...+..|.++ .++|.+......|.+|.+.
T Consensus 59 ndkqllkemleliskl-gykvflllqdqdeneleefkrkiesqgyevrkv 107 (134)
T 2lci_A 59 NDKQLLKEMLELISKL-GYKVFLLLQDQDENELEEFKRKIESQGYEVRKV 107 (134)
T ss_dssp SCHHHHHHHHHHHHHH-TCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEE
T ss_pred CcHHHHHHHHHHHHHh-CceeEEEeecCchhHHHHHHHHHHhCCeeeeec
Confidence 3455556656666666 5544444446554 5777777776666666665
No 273
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=20.17 E-value=1.1e+02 Score=23.19 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=24.8
Q ss_pred EEEEecCCc--ccHHHHHHhhcc--CCcEEEeC
Q psy9357 46 YIFVATDNN--NLNEPLKEAFKR--TEIRIVPS 74 (132)
Q Consensus 46 ~VfIaTD~~--~~~~eLk~~l~~--~~~~vv~l 74 (132)
+|.|++|.. +.-+.|+++|++ .|++|+-+
T Consensus 24 kIaIgsDhaG~~lK~~i~~~L~~~~~G~eV~D~ 56 (179)
T 3k7p_A 24 RVAIGTDHPAFAIHENLILYVKEAGDEFVPVYC 56 (179)
T ss_dssp EEEEEECTGGGGGHHHHHHHHHHTCTTEEEEEC
T ss_pred EEEEEECchHHHHHHHHHHHHHhcCCCCeEEEc
Confidence 699999976 568889999998 78999876
No 274
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=20.16 E-value=82 Score=23.67 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.5
Q ss_pred CCcEEEEecCCc--ccHHHHHHhhccCCcEEEeC
Q psy9357 43 QIKYIFVATDNN--NLNEPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 43 ~lk~VfIaTD~~--~~~~eLk~~l~~~~~~vv~l 74 (132)
+--+|+|++|.. +.-++|+++|++.|++|+-+
T Consensus 20 ~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 20 GSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp TTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEEEECchHHHHHHHHHHHHHHCCCEEEEc
Confidence 444799999966 46788999999888888864
No 275
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=20.13 E-value=1.8e+02 Score=18.45 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=11.4
Q ss_pred EEEEecCCcccHHHHHHhhccCCcE
Q psy9357 46 YIFVATDNNNLNEPLKEAFKRTEIR 70 (132)
Q Consensus 46 ~VfIaTD~~~~~~eLk~~l~~~~~~ 70 (132)
+|.|..|.......|+..|...++.
T Consensus 12 ~iLivdd~~~~~~~l~~~L~~~~~~ 36 (140)
T 3c97_A 12 SVLIAEDNDICRLVAAKALEKCTND 36 (140)
T ss_dssp EEEEECCCHHHHHHHHHHHTTTCSE
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCc
Confidence 3444444444444455555443333
No 276
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=20.09 E-value=1.9e+02 Score=19.34 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEecCCcc-cH-HHHHHhhccCCcEEEeC
Q psy9357 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNN-LN-EPLKEAFKRTEIRIVPS 74 (132)
Q Consensus 25 Ps~~~I~~~ik~~~~~~~~lk~VfIaTD~~~-~~-~eLk~~l~~~~~~vv~l 74 (132)
++.+.+++.++.++... +.-. .|-||+.. +. ..+++.++..|++...-
T Consensus 49 ~~~~~v~~~l~~~~~~~-g~p~-~i~sDnG~~f~s~~~~~~~~~~gi~~~~~ 98 (162)
T 1cxq_A 49 VTSVAAQHHWATAIAVL-GRPK-AIKTDNGSCFTSKSTREWLARWGIAHTTG 98 (162)
T ss_dssp CCHHHHHHHHHHHHHHH-CCCS-EEECCSCHHHHSHHHHHHHHHHTCEEECC
T ss_pred ccHHHHHHHHHHHHHHH-CCCe-EEEeCCchhhhhHHHHHHHHHCCCeEeeC
Confidence 67788888899988887 5544 67889875 33 45788888778876643
Done!