RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9357
(132 letters)
>gnl|CDD|211388 cd11302, O-FucT-1, GDP-fucose protein O-fucosyltransferase 1. The
protein O-fucosyltransferase 1 (Ofut1 or O-FucT-1) adds
O-fucose to EGF (epidermal growth factor-like) repeats.
The O-fucsosylation of the Notch receptor signaling
protein is dependent on this enzyme, which requires
GDP-fucose as a substrate. O-fucose residues added to
the target of O-FucT-1 may be further elongated by other
glycosyltransferases. On top of O-fucosylation, O-FucT-1
may have other functions such as the regulation of the
Notch receptor exit from the ER. Six highly conserved
cysteines are present in O-FucT-1, which is a soluble ER
protein, as well as a DXD-like motif (ERD), conserved in
mammals, Drosophila, and C. elegans. Both features are
characteristic of several glycosyltransferase families.
The membrane-bound pre-protein is released by
proteolysis and, as for most glycosyltransferases, is
strongly activated by manganese. O-FucT-1 is similar to
family 1 glycosyltransferases (GT1).
Length = 347
Score = 183 bits (466), Expect = 3e-58
Identities = 63/117 (53%), Positives = 88/117 (75%), Gaps = 2/117 (1%)
Query: 5 APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
+PQCLGY NE G T+E+C PS E +++Q+KR V++ K +F+ATDN+++ E LK+A
Sbjct: 232 SPQCLGYGNERGTLTKEMCLPSKEEILKQVKRAVKKIK-AKSVFIATDNDHMIEELKKAL 290
Query: 65 KRTEIRIVPSDQS-PHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSSFWAFP 120
K ++++V D P +DLAIL +A+HFIGNC+SSF+AFVKR RDV GLPSSF+ F
Sbjct: 291 KSLKVKVVHLDPDEPQIDLAILGKADHFIGNCVSSFSAFVKRERDVAGLPSSFFGFN 347
>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase. This
is a family of conserved proteins representing the
enzyme responsible for adding O-fucose to EGF (epidermal
growth factor-like) repeats. Six highly conserved
cysteines are present in O-FucT-1 as well as a DXD-like
motif (ERD), conserved in mammals, Drosophila, and C.
elegans. Both features are characteristic of several
glycosyltransferase families. The enzyme is a
membrane-bound protein released by proteolysis and, as
for most glycosyltransferases, is strongly activated by
manganese.
Length = 315
Score = 89.7 bits (223), Expect = 1e-22
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 14/125 (11%)
Query: 2 ETNAPQCLGYRNEYGVA-TEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNE-- 58
+P+C+GY+ E C P V L R + +++ATD E
Sbjct: 189 LLASPRCVGYKRIDSEELRREGCCPLTPEEVGLLLRALGFPKD-TSVYIATDEIYGRELE 247
Query: 59 PLKEAFKR----------TEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRD 108
PLK F E+ +D I A+ FIG C S+F+AFVKR R
Sbjct: 248 PLKAEFPNLVTKESLASKEELAPFKGGGLAALDYIICLHADVFIGTCGSTFSAFVKRERR 307
Query: 109 VKGLP 113
G P
Sbjct: 308 YLGFP 312
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and
related proteins. O-fucosyltransferase-like proteins
are GDP-fucose dependent enzymes with similarities to
the family 1 glycosyltransferases (GT1). They are
soluble ER proteins that may be proteolytically cleaved
from a membrane-associated preprotein, and are involved
in the O-fucosylation of protein substrates, the core
fucosylation of growth factor receptors, and other
processes.
Length = 206
Score = 70.1 bits (172), Expect = 8e-16
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 8 CLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRT 67
+ ++ E C S E + ++K ++ E +K ++VATD + E L+E ++
Sbjct: 87 ECCHLAKWMGEYLEECLLSAEEIAEKIKELMAERK-LKVVYVATDEADR-EELREELRKA 144
Query: 68 EIRIV-----------------PSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVK 110
IR+V + VD I S+A+ FIG S+F++ V R +
Sbjct: 145 GIRVVTKDDLLEDAELLELEKLDNYLLSLVDQEICSRADVFIGTGFSTFSSNVALLRRWR 204
Query: 111 GL 112
G
Sbjct: 205 GK 206
>gnl|CDD|211384 cd11298, O-FucT-2, GDP-fucose protein O-fucosyltransferase 2.
O-FucT-2 adds O-fucose to thrombospondin type 1 repeats
(TSRs), and appears conserved in bilateria. The
O-fucosylation of TSRs appears to play a role in
regulating secretion of metalloproteases of the ADAMTS
superfamily. O-fucosyltransferase-like proteins are
GDP-fucose dependent enzymes with similarities to the
family 1 glycosyltransferases (GT1). They are soluble ER
proteins that may be proteolytically cleaved from a
membrane-associated preprotein, and are involved in the
O-fucosylation of protein substrates, the core
fucosylation of growth factor receptors, and other
processes.
Length = 374
Score = 47.6 bits (114), Expect = 3e-07
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNN--LNEPLKEAFKRTEI-RIVPSDQSPH-- 79
PS++ +Q+ ++++ +K +F+ATD L E LK+ K+ ++ R P+ +
Sbjct: 265 PSLKGAAKQILNLMKKLK-LKKVFIATDAKKEELEE-LKKLLKKLKVVRYEPTLEELEKL 322
Query: 80 -------VDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPS 114
+D I + A +FIG S+F+ ++ R++ G P
Sbjct: 323 KDGGVAIIDQWICAHARYFIGTKESTFSFRIQEEREILGFPP 364
>gnl|CDD|211389 cd11548, NodZ_like, Alpha 1,6-fucosyltransferase similar to
Bradyrhizobium NodZ. Bradyrhizobium NodZ is an alpha
1,6-fucosyltransferase involved in the biosynthesis of
the nodulation factor, a lipo-chitooligosaccharide
formed by three-to-six beta-1,4-linked
N-acetyl-d-glucosamine (GlcNAc) residues and a fatty
acid acyl group attached to the nitrogen atom at the
non-reducing end. NodZ transfers L-fucose from the
GDP-beta-L-fucose donor to the reducing residue of the
chitin oligosaccharide backbone, before the attachment
of a fatty acid group. O-fucosyltransferase-like
proteins are GDP-fucose dependent enzymes with
similarities to the family 1 glycosyltransferases (GT1).
They are soluble ER proteins that may be proteolytically
cleaved from a membrane-associated preprotein, and are
involved in the O-fucosylation of protein substrates,
the core fucosylation of growth factor receptors, and
other processes.
Length = 287
Score = 37.0 bits (86), Expect = 0.001
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 19/90 (21%)
Query: 27 VETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPH------- 79
+ VV L++ V H IF+ATD+ + + LK F + + P + PH
Sbjct: 188 LHRVVDALRKKVALHKDAT-IFLATDSAEVKDELKRLFPD--VVVTPKEFPPHGERSASD 244
Query: 80 ---------VDLAILSQANHFIGNCISSFT 100
+D+ +L++ +H IG+ S+F+
Sbjct: 245 GLEGAEDALIDMYLLARCDHLIGSRFSTFS 274
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 34.6 bits (80), Expect = 0.009
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 25 PSVETV---VRQLKRVVREHGQIKYIFVA---TDNNNLNEPLKEAFKRTEIRIVPSDQSP 78
P +E + + + + ++KYIF+ ++ L LKE F IR++ + P
Sbjct: 333 PVIEEIIDLIEEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVL---RPP 389
Query: 79 HVDLAIL 85
LA++
Sbjct: 390 DPQLAVV 396
>gnl|CDD|211387 cd11301, Fut1_Fut2_like, Alpha-1,2-fucosyltransferase.
Alpha-1,2-fucosyltransferases (Fut1, Fut2) catalyze the
transfer of alpha-L-fucose to the terminal
beta-D-galactose residue of glycoconjugates via an
alpha-1,2-linkage, generating carbohydrate structures
that exhibit H-antigenicity for blood-group
carbohydrates. These structures also act as ligands for
morphogenesis, the adhesion of microbes, and
metastasizing cancer cells. Fut1 is responsible for
producing the H antigen on red blood cells. Fut2 is
expressed in epithelia of secretory tissues, and
individuals termed "secretors" have at least one
functional copy of the gene; they secrete H antigen
which is further processed into A and/or B antigens
depending on the ABO genotype. O-fucosyltransferase-like
proteins are GDP-fucose dependent enzymes with
similarities to the family 1 glycosyltransferases (GT1).
They are soluble ER proteins that may be proteolytically
cleaved from a membrane-associated preprotein, and are
involved in the O-fucosylation of protein substrates,
the core fucosylation of growth factor receptors, and
other processes.
Length = 265
Score = 33.6 bits (77), Expect = 0.017
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 47 IFVATDN-----NNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHF-IGNCISSF 99
FV +D+ NL KE + V + S + DL ++S H I N S+F
Sbjct: 182 FFVFSDDIEWVKENLALTSKE-----NVYFVDGNNSSYEDLYLMSLCKHVIISN--STF 233
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 29.2 bits (66), Expect = 0.58
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 60 LKEAFKRTEIRIVPSDQSPH 79
L EA K I ++ SD +PH
Sbjct: 288 LWEALKDGVIDVIASDHAPH 307
>gnl|CDD|219384 pfam07350, DUF1479, Protein of unknown function (DUF1479). This
family consists of several hypothetical Enterobacterial
proteins, of around 420 residues in length. Members of
this family are often known as YbiU. The function of
this family is unknown.
Length = 408
Score = 29.2 bits (66), Expect = 0.63
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 34/118 (28%)
Query: 18 ATEELCFPSVETVVRQLKRVVRE---HGQIKYI----FVATDNNNLNEPLKEAFKRTE-- 68
EE F S E ++ L+ + E G I F N ++ + KR
Sbjct: 19 GNEEAVFASWERLIAALRDEIEEIAARGS-SVIPEIDFSDIKNGTVSAEFRAEIKRRGCA 77
Query: 69 -IR-IVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSS-------FW 117
IR +VP DQ+ I +++ + D KG P +W
Sbjct: 78 VIRGVVPKDQA--------LAWKQEIV-------DYLEANPDFKGFPPDKPQIYELYW 120
>gnl|CDD|216330 pfam01149, Fapy_DNA_glyco, Formamidopyrimidine-DNA glycosylase
N-terminal domain. Formamidopyrimidine-DNA glycosylase
(Fpg) is a DNA repair enzyme that excises oxidized
purines from damaged DNA. This family is the N-terminal
domain contains eight beta-strands, forming a
beta-sandwich with two alpha-helices parallel to its
edges.
Length = 117
Score = 27.6 bits (62), Expect = 1.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66
EL P VETV R L+ ++ +I + V L P E F
Sbjct: 2 EL--PEVETVRRGLEPLL-VGRRITRVEV-RRPKILRGPEPEEFIE 43
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase.
Length = 588
Score = 28.0 bits (62), Expect = 1.5
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 11 YRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIR 70
YRN T + F TV++ VVR+ + +Y V D N +K R
Sbjct: 417 YRNIVVSGTVDFIFGKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCR 476
Query: 71 IVP 73
IVP
Sbjct: 477 IVP 479
>gnl|CDD|132913 cd07042, STAS_SulP_like_sulfate_transporter, Sulphate Transporter
and Anti-Sigma factor antagonist domain of SulP-like
sulfate transporters, plays a role in the function and
regulation of the transport activity, proposed general
NTP binding function. The SulP family is a large and
diverse family of anion transporters, with members from
eubacteria, plants, fungi, and mammals. They contain 10
to 14 transmembrane helices which form the catalytic
core of the protein and a C-terminal extension, the
STAS (Sulphate Transporter and AntiSigma factor
antagonist) domain which plays a role in the function
and regulation of the transport activity. The STAS
domain is found in the C-terminal region of sulphate
transporters and bacterial anti-sigma factor
antagonists. It has been suggested that this domain may
have a general NTP binding function.
Length = 107
Score = 26.4 bits (59), Expect = 2.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 22 LCFPSVETVVRQLKRVVREHGQIKYI 47
L F + E +L R+V E +K +
Sbjct: 19 LFFGNAEYFKDRLLRLVDEDPPLKVV 44
>gnl|CDD|220770 pfam10469, AKAP7_NLS, AKAP7 2'5' RNA ligase-like domain. AKAP7_NLS
is the N-terminal domain of the cyclic AMP-dependent
protein kinase A, PKA, anchor protein AKAP7. This
protein anchors PKA for its role in regulating
PKA-mediated gene transcription in both somatic cells
and oocytes. AKAP7_NLS carries the nuclear localisation
signal (NLS) KKRKK, that indicates the cellular destiny
of this anchor protein. Binding to the regulatory
subunits RI and RII of PKA is mediated via the family
AKAP7_RIRII_bdg. at the C-terminus. This family
represents a region that contains two 2'5' RNA ligase
like domains pfam02834. Presumably this domain carried
out some as yet unknown enzymatic function.
Length = 205
Score = 26.8 bits (60), Expect = 2.8
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 5/60 (8%)
Query: 54 NNLNEPLKEAFKRTEIRIV---PSDQSPHVDLAILSQANHFIGNCISSFTA--FVKRHRD 108
+ + L AF + D H+ L A SF A ++ D
Sbjct: 112 QKIADRLLRAFVEKGLLAKDNNEFDVKLHLTLMKTRYAPKKKKKGRESFDAPEILEDFGD 171
>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding
domain of ATP-binding cassette transporter-like systems
that belong to the type I periplasmic binding fold
protein superfamily. Periplasmic binding domain of
ATP-binding cassette transporter-like systems that
belong to the type I periplasmic binding fold protein
superfamily. They are mostly present in archaea and
eubacteria, and are primarily involved in scavenging
solutes from the environment. ABC-type transporters
couple ATP hydrolysis with the uptake and efflux of a
wide range of substrates across bacterial membranes,
including amino acids, peptides, lipids and sterols, and
various drugs. These systems are comprised of
transmembrane domains, nucleotide binding domains, and
in most bacterial uptake systems, periplasmic binding
proteins (PBPs) which transfer the ligand to the
extracellular gate of the transmembrane domains. These
PBPs bind their substrates selectively and with high
affinity. Members of this group include ABC-type
Leucine-Isoleucine-Valine-Binding Proteins (LIVBP),
which are homologous to the aliphatic amidase
transcriptional repressor, AmiC, of Pseudomonas
aeruginosa. The uncharacterized periplasmic components
of various ABC-type transport systems are included in
this group.
Length = 298
Score = 27.0 bits (60), Expect = 3.4
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 25 PSVETVVRQLKRVVREHGQIKYIFVATDNNN----LNEPLKEAFKRTEIRIV-------- 72
PS L + E G++K + + D+ L +EA K+ +V
Sbjct: 116 PSDAQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPG 175
Query: 73 PSDQSPHV 80
+D SP +
Sbjct: 176 ATDFSPLI 183
>gnl|CDD|206402 pfam14234, DUF4336, Domain of unknown function (DUF4336).
Length = 314
Score = 26.8 bits (60), Expect = 3.6
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 19 TEELCFPSVETVVRQLKRVVREHGQIKYIFVAT 51
T E VR L+ + EHG +KYI + T
Sbjct: 41 TPEC--------VRLLEELEAEHGPVKYIVLPT 65
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 26.3 bits (58), Expect = 3.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 58 EPLKEAFKRTEIRIVPSDQSPHVD 81
E KE F +I VPSD+SPH D
Sbjct: 18 EQAKELFDLDKIVGVPSDESPHKD 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,571,192
Number of extensions: 572039
Number of successful extensions: 614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 35
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)