RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9357
(132 letters)
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
glycosyltransferase, GT-B, catalytic mechanism,; HET:
GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
3zy5_A* 3zy6_A*
Length = 362
Score = 137 bits (346), Expect = 1e-40
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 5 APQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF 64
+ QCLG + G T+E+C PS + ++ Q+ V G K +FVA+D +++ + + EA
Sbjct: 242 SEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIG-AKSVFVASDKDHMIDEINEAL 300
Query: 65 KRTEIRIV-PSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGL---PSSFWAFP 120
K EI + LAI+ +A+ F+GNC+S+F+ VKR RD G PS+F+
Sbjct: 301 KPYEIEAHRQEPDDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAGQSPRPSAFFGIR 360
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 103 bits (257), Expect = 2e-27
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 6 PQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLN-EPLKEAF 64
+ R + + PS+E VR+++ +++ H + +FVATD E LK+
Sbjct: 267 YLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHR-LDKVFVATDAVRKEYEELKKLL 325
Query: 65 KRT--------EIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKRHRDVKGLPSS- 115
E+ + +D I + A FIG +S+F+ + R++ GL
Sbjct: 326 PEMVRFEPTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKT 385
Query: 116 -FWAFP 120
+ F
Sbjct: 386 TYNRFC 391
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 34.5 bits (78), Expect = 0.006
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF---------KRTEIRI 71
E VE + L R R K +++ATD+ +L + K + +
Sbjct: 318 EEYMVHVEEHFQLLAR--RMQVDKKRVYLATDDPSLLKEAKTKYPNYEFISDNSISWSAG 375
Query: 72 VPSDQSPH------VDLAILSQANHFIGNCISSF 99
+ + + + +D+ LSQA+ + S
Sbjct: 376 LHNRYTENSLRGVILDIHFLSQADFLVCTFSSQV 409
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
3six_A*
Length = 330
Score = 33.3 bits (75), Expect = 0.013
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 13 NEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAF--KRTEIR 70
+ A EL V +R+ K + + +F+ TD+ + + + F +
Sbjct: 187 HAPYWADSELALHQVCMAIRKAKA--LSYPKPVKVFLCTDSAQVLDQVSGLFPDVFAVPK 244
Query: 71 IVPSDQSPH---------------VDLAILSQANHFIG-NCISSFTAF 102
+D++ +D+ +L++ I S+FT +
Sbjct: 245 RFQADRAGPLHSAEMGIEGGASALIDMYLLARCATVIRFPPTSAFTRY 292
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.020
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 61 KEAFKRTE--IRIVPSDQSPHVDLAI 84
K+A K+ + +++ D +P LAI
Sbjct: 19 KQALKKLQASLKLYADDSAPA--LAI 42
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix,
zinc-LESS finger, hydrolase, DNA DAMA repair,
DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis
thaliana} PDB: 3twm_A* 3twk_A
Length = 310
Score = 29.5 bits (67), Expect = 0.25
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66
EL P VE R ++ +IK + +A DN ++ F+
Sbjct: 3 EL--PEVEAARRAIEENC-LGKKIKRVIIADDNKVIHGISPSDFQT 45
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 28.8 bits (64), Expect = 0.46
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 24 FPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLA 83
+ ET+++++ V++ G+I F +N+ L + K++E + Q
Sbjct: 102 MTTPETMLQKMIHSVKKGGKI-ICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDT 160
Query: 84 ILSQANHFIG 93
+ + IG
Sbjct: 161 QRNGKDGNIG 170
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP:
c.78.2.1 c.78.2.1 PDB: 1b74_A*
Length = 254
Score = 27.5 bits (62), Expect = 1.3
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 26 SVETVVRQLKRVVREHGQIKYIFVATDN 53
S E + L +++ G TD
Sbjct: 200 SSEALSLSLHNFIKDDGSSSLELFFTDL 227
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 26.8 bits (58), Expect = 2.4
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 1 METNAPQCLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVATDN-NNLNEP 59
+ C N + E +PSV V + L I+ IF T + +
Sbjct: 285 FMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSA-----ANIQPIFAVTSAALPVYQE 339
Query: 60 LKEAFKRTEIRIVPSDQSPHVDLAI 84
L + ++ + + D S V L +
Sbjct: 340 LSKLIPKSAVGELSEDSSNVVQLIM 364
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 26.6 bits (58), Expect = 3.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 27 VETVVRQLKRVVREHGQIKY---IFVATDNNNLNEPLKEAFKRTEI 69
+E + R++ +VRE G +Y +A + + +KE F EI
Sbjct: 324 LEGIAREIHALVREKG-YRYKDVAILARQPEDYKDMVKEVFADYEI 368
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme,
xanthophyll cycle, non photochemical quenching, NPQ,
antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana}
PDB: 3cqr_A
Length = 185
Score = 25.0 bits (54), Expect = 6.8
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 28 ETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLK 61
+++ +L++ + G+ F+ TDN EP
Sbjct: 146 NSIIPELEKAAKSIGRDFSTFIRTDNTCGPEPRS 179
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich,
rossmann-like fold, structural genomics, PSI-2, protein
structure initiative; HET: MSE G3H; 1.65A {Bacillus
subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A*
3bxh_A*
Length = 255
Score = 24.8 bits (54), Expect = 9.6
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 60 LKEAFKRTEIRIVP--SDQSPHVDLAILSQANHFIGNCISS 98
LKE + IV SDQSP V + A + S
Sbjct: 16 LKERLNLKDAIIVSGDSDQSPWVKKEMGRAAVACMKKRFSG 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,932,870
Number of extensions: 104261
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 24
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)