RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9357
(132 letters)
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small
subunit N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 151
Score = 30.0 bits (67), Expect = 0.048
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 20 EELCFPSVETV-VRQLKRVVREHGQIKYIFVATDNNNLNEPLKEA 63
+ ++ + R+L R++RE G +A DN + L++A
Sbjct: 102 KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKA 146
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 500
Score = 30.2 bits (68), Expect = 0.066
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 17/133 (12%)
Query: 8 CLGYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKYIFVA-------TDNNNLNEPL 60
C R+ + + P E +V+Q+ G + V+ D N L
Sbjct: 337 CAEMRDS-EQPPDAMSAP--EELVQQVLSAGWREG----LNVSCENALPRYDPTAYNTIL 389
Query: 61 KEAFKRTEIRIVPSDQSPHVDLAILSQANHFI-GNCISSFTAFVKR-HRDVKGLPSSFWA 118
+ A + P + L +N + G +F FV R H ++ P
Sbjct: 390 RNARPHGINQSGPPEHKLFG-FTYLRLSNQLVEGQNYVNFKTFVDRMHANLPRDPYVDPM 448
Query: 119 FPIKKTAQKVKDE 131
P+ ++ ++ E
Sbjct: 449 APLPRSGPEISIE 461
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia
porcellus) [TaxId: 10141]}
Length = 123
Score = 27.1 bits (60), Expect = 0.42
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 10 GYRNEYGVATEELCFPSVETVVRQLKRVVREHG 42
RN ++ ++L + + +K+++ G
Sbjct: 68 QSRNICDISCDKLLDDDLTDDIMCVKKILDIKG 100
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
[TaxId: 4120]}
Length = 498
Score = 27.1 bits (60), Expect = 0.62
Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 37/143 (25%)
Query: 8 CLGYRNEYGVATEELCFPSVETVVRQLKRVVREHG------------------QIKYIFV 49
CL R+ E P + +V+Q+ + Q+
Sbjct: 345 CLEMRDS-EQPAEAKSAP--QELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKLR 401
Query: 50 ATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGNCISSFTAFVKR-HRD 108
N P + T +R+ +F F FVK+ H D
Sbjct: 402 PNGVNLNGPPKLKMSGLTYLRLSDDLLQTD----------NF-----ELFKKFVKKMHAD 446
Query: 109 VKGLPSSFWAFPIKKTAQKVKDE 131
+ P++ ++++ + +
Sbjct: 447 LDPSPNAISPAVLERSNSAITID 469
>d2nwdx1 d.2.1.2 (X:1-130) Lysozyme {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 26.4 bits (58), Expect = 0.70
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 10 GYRNEYGVATEELCFPSVETVVRQLKRVVREHGQIKY 46
G N ++ L ++ V KRVVR+ I+
Sbjct: 72 GAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRA 108
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 123
Score = 26.0 bits (57), Expect = 1.2
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 10 GYRNEYGVATEELCFPSVETVVRQLKRVVREHG 42
N G++ ++L ++ + K+++ G
Sbjct: 68 ESENICGISCDKLLDDELDDDIACAKKILAIKG 100
>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus
[TaxId: 2714]}
Length = 147
Score = 25.7 bits (56), Expect = 1.7
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 26 SVETVVRQLKRVVREHGQIKYIFVATDNN 54
S E + L +++ G TD +
Sbjct: 95 SSEALSLSLHNFIKDDGSSSLELFFTDLS 123
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 25.5 bits (56), Expect = 2.1
Identities = 9/25 (36%), Positives = 9/25 (36%), Gaps = 3/25 (12%)
Query: 111 GLPSSFWAF---PIKKTAQKVKDEL 132
GLP F K K K EL
Sbjct: 316 GLPPHFNIKIIAVPPKNLSKCKSEL 340
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 25.3 bits (55), Expect = 2.6
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 51 TDNNNLNEPLKEAFKRTEIRIVPS--DQSPHVDLAILSQ-ANHFIGNCISS 98
T+ L +KE + + I+P+ D +P + +SQ A + N I
Sbjct: 4 TNMFKLENYVKEKYSLESLEIIPNEFDDTPTILSERISQVAAGVLRNLIDD 54
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 23.7 bits (51), Expect = 4.6
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 91 FIGNCISSFTAFVKRHRDVKGLPSSFWA 118
I + +S + F+K H + G SS+W
Sbjct: 57 SIRHNLSLHSKFIKVHNEATG-KSSWWM 83
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 24.8 bits (53), Expect = 4.7
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 35 KRVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFIGN 94
++ + YI+ +++ E +K+ V ++ V F+G
Sbjct: 26 FKIDYDRNFEPYIYALLKDDSAIEDVKKITAERHGTTVRVVRAEKVK-------KKFLGR 78
Query: 95 CISSFTAFVKRHRDVKGLPSSF 116
I + + +DV +
Sbjct: 79 PIEVWKLYFTHPQDVPAIRDKI 100
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator
CggR {Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 24.2 bits (52), Expect = 5.5
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 56 LNEPLKEAFKRTEIRIVPS--DQSPHVDLAILSQANHFIGNCISS 98
L + LKE + IV DQSP V + A + S
Sbjct: 9 LEKTLKERLNLKDAIIVSGDSDQSPWVKKEMGRAAVACMKKRFSG 53
>d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg)
{Escherichia coli [TaxId: 562]}
Length = 128
Score = 23.5 bits (50), Expect = 8.6
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFKR 66
EL P VET R ++ + I + V N L P+ E R
Sbjct: 2 EL--PEVETSRRGIEPHL-VGATILHAVVR--NGRLRWPVSEEIYR 42
>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 66
Score = 22.5 bits (48), Expect = 8.8
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 36 RVVREHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQ 76
VV H + + + L+ F+ ++I D+
Sbjct: 6 IVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDR 46
>d1tdza2 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg)
{Lactococcus lactis [TaxId: 1358]}
Length = 130
Score = 23.2 bits (49), Expect = 8.9
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 21 ELCFPSVETVVRQLKRVV 38
EL P VETV R+L++ +
Sbjct: 1 EL--PEVETVRRELEKRI 16
>d1zbsa1 c.55.1.5 (A:108-283) Hypothetical protein PG1100
{Porphyromonas gingivalis [TaxId: 837]}
Length = 176
Score = 23.5 bits (50), Expect = 9.4
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 40 EHGQIKYIFVATDNNNLNEPLKEAFKRTEIRIVPSDQSPHVDLAILSQANHFI 92
+ F+ + + E L K+ + + QSP ++ I N+ +
Sbjct: 125 NRPDLPLHFIGSVAFHYREVLSSVIKKRGLTLGSVLQSP-MEGLIQYHHNNHV 176
>d1r2za2 b.113.1.1 (A:2-134) DNA repair protein MutM (Fpg)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 133
Score = 23.2 bits (49), Expect = 9.6
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 21 ELCFPSVETVVRQLKRVVREHGQIKYIFVATDNNNLNEPLKEAFK 65
+L P VET+ R L ++ I+ + + N + EAF
Sbjct: 2 QL--PEVETIRRTLLPLI-VGKTIEDVRIFWPNIIRHPRDSEAFA 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,039
Number of extensions: 20303
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 24
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)