Query psy936
Match_columns 344
No_of_seqs 189 out of 1865
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 17:07:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.8E-36 6.2E-41 320.6 8.6 255 46-330 376-653 (823)
2 1yae_A Glutamate receptor, ion 99.6 2.2E-15 7.7E-20 141.6 12.5 124 49-204 8-142 (312)
3 2rc8_A Glutamate [NMDA] recept 99.5 1.3E-13 4.5E-18 128.7 9.3 83 87-192 68-154 (294)
4 3g3k_A Glutamate receptor, ion 99.4 5.8E-13 2E-17 120.5 12.8 107 52-190 2-118 (259)
5 1pb7_A N-methyl-D-aspartate re 99.3 9.1E-12 3.1E-16 116.3 10.0 107 54-194 41-157 (292)
6 2v3u_A Glutamate receptor delt 99.3 1.4E-11 4.7E-16 111.2 10.7 110 52-192 1-116 (265)
7 2a5s_A N-methyl-D-aspartate re 99.3 1.6E-11 5.5E-16 113.9 10.3 85 86-193 56-144 (284)
8 1mqi_A Glutamate receptor 2; G 99.2 4.8E-11 1.6E-15 108.0 9.6 110 52-193 2-121 (263)
9 4h5g_A Amino acid ABC superfam 99.1 1E-10 3.4E-15 105.5 8.0 101 54-192 12-112 (243)
10 3k4u_A Binding component of AB 99.1 4.3E-10 1.5E-14 100.5 11.7 98 53-191 4-101 (245)
11 4gvo_A LMO2349 protein; struct 99.1 2E-10 6.8E-15 103.5 7.3 100 51-191 6-107 (243)
12 1ii5_A SLR1257 protein; membra 99.0 1.7E-09 5.9E-14 94.9 10.7 101 53-192 3-105 (233)
13 3hv1_A Polar amino acid ABC up 99.0 2.2E-09 7.4E-14 97.3 11.4 97 52-189 19-115 (268)
14 2q88_A EHUB, putative ABC tran 99.0 2.8E-09 9.7E-14 95.6 11.7 98 53-192 12-110 (257)
15 3i6v_A Periplasmic His/Glu/Gln 98.9 1.6E-09 5.4E-14 96.6 8.2 98 53-191 4-101 (232)
16 4f3p_A Glutamine-binding perip 98.9 7.1E-09 2.4E-13 92.8 11.7 97 52-190 22-118 (249)
17 2pyy_A Ionotropic glutamate re 98.9 3.3E-09 1.1E-13 92.5 8.3 97 54-192 3-99 (228)
18 3mpk_A Virulence sensor protei 98.9 5.2E-09 1.8E-13 95.3 8.9 98 53-191 31-128 (267)
19 1wdn_A GLNBP, glutamine bindin 98.9 1.3E-08 4.3E-13 88.7 10.9 96 54-191 3-98 (226)
20 3kzg_A Arginine 3RD transport 98.8 6.7E-09 2.3E-13 92.2 8.8 100 54-193 3-102 (237)
21 1lst_A Lysine, arginine, ornit 98.8 9.7E-09 3.3E-13 90.7 9.2 100 53-193 3-102 (239)
22 3tql_A Arginine-binding protei 98.8 1.1E-08 3.9E-13 89.1 9.4 99 54-193 2-100 (227)
23 3kbr_A Cyclohexadienyl dehydra 98.8 6.4E-09 2.2E-13 92.1 7.6 98 53-191 14-111 (239)
24 4dz1_A DALS D-alanine transpor 98.8 2.1E-08 7.3E-13 90.6 9.5 100 52-192 27-126 (259)
25 3del_B Arginine binding protei 98.7 3.8E-08 1.3E-12 87.2 9.6 99 52-192 9-109 (242)
26 2iee_A ORF2, probable ABC tran 98.7 4E-08 1.4E-12 89.5 9.8 99 53-191 20-120 (271)
27 4eq9_A ABC transporter substra 98.7 2.7E-08 9.3E-13 88.0 8.0 95 53-189 7-102 (246)
28 2y7i_A STM4351; arginine-bindi 98.7 5.9E-08 2E-12 84.9 9.8 99 52-191 4-103 (229)
29 3h7m_A Sensor protein; histidi 98.7 7.7E-08 2.6E-12 84.2 10.5 99 52-192 9-107 (234)
30 2vha_A Periplasmic binding tra 98.5 3.5E-07 1.2E-11 83.6 9.9 102 53-195 16-124 (287)
31 2pvu_A ARTJ; basic amino acid 98.5 3.1E-07 1.1E-11 83.4 8.8 103 50-194 38-140 (272)
32 2yln_A Putative ABC transporte 98.4 6E-07 2E-11 82.6 8.9 101 52-193 55-156 (283)
33 1xt8_A Putative amino-acid tra 98.4 6.6E-07 2.3E-11 82.2 8.9 100 53-193 43-145 (292)
34 2v25_A Major cell-binding fact 98.4 7.8E-07 2.7E-11 79.0 8.7 102 53-194 37-141 (259)
35 4i62_A Amino acid ABC transpor 98.4 5.3E-07 1.8E-11 80.7 7.5 100 53-190 38-137 (269)
36 3qax_A Probable ABC transporte 98.4 8.4E-07 2.9E-11 79.3 8.6 97 53-191 30-128 (268)
37 2yjp_A Putative ABC transporte 98.3 9.7E-07 3.3E-11 81.4 8.2 101 53-194 54-157 (291)
38 2ih3_C Voltage-gated potassium 96.5 0.0049 1.7E-07 50.2 6.5 58 239-296 59-117 (122)
39 2k1e_A Water soluble analogue 96.5 0.0019 6.6E-08 51.0 3.8 76 217-297 21-97 (103)
40 2a9h_A Voltage-gated potassium 96.4 0.0098 3.4E-07 50.6 7.8 60 239-298 82-142 (155)
41 3eff_K Voltage-gated potassium 96.1 0.021 7.2E-07 47.2 8.3 58 239-296 38-96 (139)
42 4h33_A LMO2059 protein; bilaye 95.9 0.024 8.1E-07 47.0 7.8 59 239-297 41-100 (137)
43 3ouf_A Potassium channel prote 95.2 0.022 7.4E-07 44.4 4.7 58 240-297 31-89 (97)
44 2q67_A Potassium channel prote 95.2 0.045 1.6E-06 43.9 6.7 57 240-296 48-105 (114)
45 3ldc_A Calcium-gated potassium 95.1 0.069 2.4E-06 40.1 7.1 54 240-293 27-81 (82)
46 3vou_A ION transport 2 domain 94.8 0.072 2.5E-06 44.5 7.3 56 240-295 51-107 (148)
47 1xl4_A Inward rectifier potass 93.4 0.21 7.1E-06 46.9 8.0 59 239-297 80-139 (301)
48 2ozz_A Hypothetical protein YH 93.3 0.024 8.2E-07 51.4 1.4 74 86-191 29-108 (231)
49 1orq_C Potassium channel; volt 92.8 0.28 9.6E-06 43.2 7.6 57 239-295 163-220 (223)
50 2qks_A KIR3.1-prokaryotic KIR 92.6 0.31 1.1E-05 46.1 8.1 60 240-299 77-137 (321)
51 1p7b_A Integral membrane chann 92.3 0.12 4.1E-06 49.2 4.7 61 239-299 94-155 (333)
52 2r9r_B Paddle chimera voltage 92.0 0.16 5.4E-06 51.2 5.4 57 239-295 373-430 (514)
53 3pjs_K KCSA, voltage-gated pot 90.7 0.1 3.5E-06 44.5 2.2 59 239-297 65-124 (166)
54 3beh_A MLL3241 protein; transm 89.5 0.34 1.1E-05 45.7 4.9 56 241-296 161-217 (355)
55 3n5l_A Binding protein compone 87.1 0.75 2.6E-05 42.6 5.6 61 54-138 4-64 (310)
56 4gx0_A TRKA domain protein; me 86.3 0.96 3.3E-05 45.4 6.3 49 240-288 50-99 (565)
57 3ukm_A Potassium channel subfa 86.1 0.8 2.7E-05 42.5 5.1 69 239-307 199-275 (280)
58 3p7i_A PHND, subunit of alkylp 85.3 1.2 4E-05 41.6 6.0 70 51-144 11-81 (321)
59 3sya_A G protein-activated inw 80.2 3.6 0.00012 39.1 7.1 61 239-299 89-152 (340)
60 3ix1_A N-formyl-4-amino-5-amin 76.3 2.7 9.3E-05 37.8 4.9 79 89-193 19-98 (302)
61 3um7_A Potassium channel subfa 75.0 5.6 0.00019 37.3 6.7 56 240-295 223-285 (309)
62 3um7_A Potassium channel subfa 74.2 2.1 7E-05 40.2 3.5 57 239-295 113-170 (309)
63 1lnq_A MTHK channels, potassiu 73.6 0.79 2.7E-05 42.8 0.5 60 240-299 44-104 (336)
64 3spc_A Inward-rectifier K+ cha 73.0 9.3 0.00032 36.3 7.8 61 239-299 92-155 (343)
65 2y7p_A LYSR-type regulatory pr 72.9 6 0.00021 33.4 6.0 71 89-193 21-92 (218)
66 3ukm_A Potassium channel subfa 67.7 3.1 0.00011 38.5 3.1 59 238-296 90-149 (280)
67 4ab5_A Transcriptional regulat 65.6 8.8 0.0003 31.6 5.3 70 89-192 21-91 (222)
68 3oxn_A Putative transcriptiona 65.5 10 0.00034 32.1 5.8 71 89-193 32-103 (241)
69 3lr1_A Tungstate ABC transport 64.5 9.9 0.00034 34.0 5.7 78 89-193 19-96 (236)
70 3jv9_A OXYR, transcriptional r 63.7 8.6 0.0003 31.5 4.9 70 89-192 17-87 (219)
71 1i6a_A OXYR, hydrogen peroxide 59.3 11 0.00038 31.3 4.9 71 89-193 18-89 (219)
72 3muq_A Uncharacterized conserv 58.8 14 0.00048 33.0 5.6 78 89-193 19-96 (237)
73 3uif_A Sulfonate ABC transport 58.0 12 0.00042 34.3 5.3 77 94-194 35-112 (348)
74 3qsl_A Putative exported prote 56.5 13 0.00045 33.4 5.2 68 99-191 59-126 (346)
75 2hxr_A HTH-type transcriptiona 55.6 15 0.0005 30.9 5.0 70 89-192 43-113 (238)
76 3ho7_A OXYR; beta-alpha-barrel 54.8 10 0.00036 31.4 3.9 70 89-192 24-94 (232)
77 1twy_A ABC transporter, peripl 53.5 15 0.00052 31.7 5.0 71 91-192 42-114 (290)
78 2ql3_A Probable transcriptiona 52.2 14 0.00046 30.3 4.2 70 89-192 18-88 (209)
79 2x26_A Periplasmic aliphatic s 49.7 26 0.00088 31.1 5.9 73 97-193 24-97 (308)
80 1atg_A MODA, periplasmic molyb 47.6 19 0.00065 29.8 4.4 77 91-194 14-93 (231)
81 4ddd_A Immunogenic protein; ss 47.3 25 0.00087 32.3 5.6 91 89-197 47-142 (327)
82 2nr1_A NR1 M2, M2; receptor, s 45.4 4.1 0.00014 23.9 -0.1 20 238-257 5-24 (27)
83 2esn_A Probable transcriptiona 45.0 31 0.001 30.3 5.6 71 89-193 114-188 (310)
84 3fxq_A LYSR type regulator of 44.5 47 0.0016 29.1 6.8 73 89-193 105-178 (305)
85 1uth_A LYSR-type regulatory pr 42.1 40 0.0014 29.9 6.0 70 90-193 119-189 (315)
86 3rvy_A ION transport protein; 42.1 20 0.00069 32.2 3.9 59 240-298 179-244 (285)
87 2h9b_A HTH-type transcriptiona 40.6 27 0.00094 30.9 4.6 70 89-192 103-173 (312)
88 3cvg_A Putative metal binding 39.2 21 0.00074 32.1 3.7 76 89-192 33-116 (294)
89 3onm_A Transcriptional regulat 38.8 34 0.0012 28.6 4.8 70 89-194 40-110 (238)
90 2fyi_A HTH-type transcriptiona 38.3 28 0.00095 29.0 4.0 71 89-192 27-98 (228)
91 3kbr_A Cyclohexadienyl dehydra 35.4 24 0.00082 29.5 3.2 39 291-329 104-142 (239)
92 2h98_A HTH-type transcriptiona 35.0 35 0.0012 30.5 4.3 69 89-191 103-172 (313)
93 1ixc_A CBNR, LYSR-type regulat 34.3 27 0.00091 30.3 3.4 70 89-192 104-174 (294)
94 4ecf_A ABC-type phosphate tran 34.1 42 0.0014 29.7 4.7 74 91-192 18-92 (264)
95 2x7q_A Ca3427, possible thiami 33.9 1.1E+02 0.0036 27.5 7.5 38 98-140 38-75 (321)
96 3fzv_A Probable transcriptiona 33.1 40 0.0014 29.4 4.4 71 89-193 108-180 (306)
97 3kn3_A Putative periplasmic pr 29.5 63 0.0021 28.8 5.0 77 89-192 19-95 (242)
98 3hhf_B Transcriptional regulat 26.5 55 0.0019 26.3 3.8 65 89-190 20-85 (213)
99 1us5_A Putative GLUR0 ligand b 26.2 87 0.003 27.6 5.4 41 93-139 38-79 (314)
100 1ixh_A Phosphate-binding prote 26.1 51 0.0018 30.1 3.9 72 92-192 17-88 (321)
101 3ksx_A Nitrate transport prote 26.0 1.5E+02 0.0052 26.3 7.1 36 98-139 51-87 (324)
102 4gvo_A LMO2349 protein; struct 25.4 36 0.0012 29.0 2.5 39 290-330 98-136 (243)
103 4exl_A PBP 1, phosphate-bindin 24.1 1.2E+02 0.0041 26.7 5.9 73 92-192 19-92 (265)
104 4gd5_A Phosphate ABC transport 23.5 90 0.0031 27.5 4.9 82 82-193 36-124 (279)
105 2zzv_A ABC transporter, solute 21.8 1.1E+02 0.0039 28.2 5.4 49 93-142 54-102 (361)
106 1al3_A Cys regulon transcripti 20.6 80 0.0027 28.0 4.0 71 90-193 107-178 (324)
107 4dz1_A DALS D-alanine transpor 20.0 1E+02 0.0035 26.1 4.5 36 292-329 119-154 (259)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.8e-36 Score=320.60 Aligned_cols=255 Identities=22% Similarity=0.404 Sum_probs=211.4
Q ss_pred CccccCCCceEEEEecCCCcccccCCCceeeeec--CCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCC----
Q psy936 46 DSWLIIEQLRLPIEPTIPSFLFQDQKPMSWVTTN--NKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQ---- 119 (344)
Q Consensus 46 ~~~~~l~g~~L~v~~~~P~~~~~~~~P~~~~~~~--~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~---- 119 (344)
++..+++|++|+|+ + ...+||.+...+ ..++...+.|+++||++++|+++||+++++..+++.||..
T Consensus 376 ~~~~~~~~~~l~v~------~-~~~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~ 448 (823)
T 3kg2_A 376 DDTSGLEQKTVVVT------T-ILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADT 448 (823)
T ss_dssp CCCSSCCCCCEEEE------E-CCCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTT
T ss_pred CcccccCCCEEEEE------E-ecCCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCC
Confidence 56678999999999 6 567888765321 1123334569999999999999999999999998888873
Q ss_pred --chhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC-CCc
Q psy936 120 --DGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES-ATG 196 (344)
Q Consensus 120 --~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~-~~~ 196 (344)
+.|++++|.+|++|+++++++++.+|.+ .+|||.||..++.+++++++... ..+
T Consensus 449 g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~-----------------------~~dfs~py~~~~~~~~v~~~~~~~~~~ 505 (823)
T 3kg2_A 449 KIWNGMVGELVYGKADIAIAPLTITLVREE-----------------------VIDFSKPFMSLGISIMIKKPQKSKPGV 505 (823)
T ss_dssp CCBCHHHHHHHTTSCSEECSCCBCCHHHHT-----------------------TEEECSCSEEECEEEEEECCCCCCCCG
T ss_pred CchhhHHHhhccccCcEEecceecchhhee-----------------------eEEeccchhhCCEEEEEECCCcccccc
Confidence 5699999999999999999999999999 99999999999999999998754 477
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC-------------CCcCchhHHHHHHHHHHcCCCCCCCC
Q psy936 197 SGLLAPFEIEVWFLILISLVLIGPIMHAIMRVRRWLSGTQS-------------ELYPISACTWFVYGALMKQGSTLNPR 263 (344)
Q Consensus 197 ~~~l~PF~~~vWl~il~~~i~~~~vl~~i~r~~~~~~~~~~-------------~~~~i~~~~~~~~~~ll~qg~~~~p~ 263 (344)
+.+++||++.+|++++++++++++++|++.|+.+..|..+. +.+++.+++|++++++++||.+..|+
T Consensus 506 ~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~ 585 (823)
T 3kg2_A 506 FSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPR 585 (823)
T ss_dssp GGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------CC
T ss_pred hHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCc
Confidence 89999999999999999999999999999998766554321 23458899999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHhhcccceeeeeecCCCCCCCCCHHHHhCCC-CcEEEEcCchhhHhhhhc
Q psy936 264 TDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVEDIANPT-NTWCAEAGGAVEYSIKLY 330 (344)
Q Consensus 264 s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~I~TledL~~s~-~~~g~~~~~~~e~~l~~~ 330 (344)
+.++|+++++|++++++++++|+|+|+|+||.+++.++|+|++||++++ +++|+..+++.+.++++.
T Consensus 586 ~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~ 653 (823)
T 3kg2_A 586 SLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRS 653 (823)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHC
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999865 789999888888888763
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.62 E-value=2.2e-15 Score=141.55 Aligned_cols=124 Identities=14% Similarity=0.186 Sum_probs=92.0
Q ss_pred ccCCCceEEEEecCCCcccccCCCceeeeec----CCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCC------
Q psy936 49 LIIEQLRLPIEPTIPSFLFQDQKPMSWVTTN----NKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLD------ 118 (344)
Q Consensus 49 ~~l~g~~L~v~~~~P~~~~~~~~P~~~~~~~----~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~------ 118 (344)
...++.+|+|+ + .+.+||.+.... +++|+. .|+++||++++++++|++++++..+++.||.
T Consensus 8 ~i~~~~~l~V~------~-~~~~P~~~~~~~~~~~~~~g~~--~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~ 78 (312)
T 1yae_A 8 DSLSNRSLIVT------T-ILEEPYVLFKKSDKPLYGNDRF--EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNG 78 (312)
T ss_dssp TTTCSCEEEEE------E-CCBTTTBEECCCSSCCCGGGGE--ESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTC
T ss_pred hhhcCceEEEE------E-eccCCeeEEeccccccCCCceE--EEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCC
Confidence 34667899999 7 445999865310 035654 5999999999999999999999888777884
Q ss_pred CchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCC-CCCCcc
Q psy936 119 QDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH-ESATGS 197 (344)
Q Consensus 119 ~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~-~~~~~~ 197 (344)
.|.+++++|.+|++|++++++.++.+|.+ .++||.||..+..+++++++. ....++
T Consensus 79 ~~~~~~~~l~~g~~D~~~~~~~~t~eR~~-----------------------~~~fs~py~~~~~~~~~~~~~~~~~~~~ 135 (312)
T 1yae_A 79 QWNGMVRELIDHKADLAVAPLAITYVREK-----------------------VIDFSKPFMTLGISILYRKPNGTNPGVF 135 (312)
T ss_dssp CBCSHHHHHHTTSCSEECSSCBCCHHHHH-----------------------HEEEEEEEEEECEEEEEEC---------
T ss_pred cchHHHHHHhCCCcCEEeecceechhhcc-----------------------eEEecceeeecceEEEEeCCccccccce
Confidence 35689999999999999999999999998 999999999999999999876 456788
Q ss_pred cccccch
Q psy936 198 GLLAPFE 204 (344)
Q Consensus 198 ~~l~PF~ 204 (344)
.++.||+
T Consensus 136 ~~~~pf~ 142 (312)
T 1yae_A 136 SFLNGGS 142 (312)
T ss_dssp -------
T ss_pred eeecccc
Confidence 9999999
No 3
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.45 E-value=1.3e-13 Score=128.65 Aligned_cols=83 Identities=8% Similarity=0.177 Sum_probs=76.4
Q ss_pred EeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCC----chhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHH
Q psy936 87 GHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQ----DGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKL 162 (344)
Q Consensus 87 ~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~----~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 162 (344)
..|+++||++++++++|++++++..+++.||.. |.+++++|.+|++|+++++++++.+|.+
T Consensus 68 ~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~--------------- 132 (294)
T 2rc8_A 68 CYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQ--------------- 132 (294)
T ss_dssp EESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHT---------------
T ss_pred ceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhc---------------
Confidence 579999999999999999999999988888872 6799999999999999999999999988
Q ss_pred HhhhccccEEEeceeeccceeEEEEeCCCC
Q psy936 163 QLQQEEAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 163 ~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.++||.|++..+..++++++..
T Consensus 133 --------~~~fs~P~~~~~~~i~~~~~~~ 154 (294)
T 2rc8_A 133 --------VIDFTSPFFSTSLGILVRTRGT 154 (294)
T ss_dssp --------TSEECSCSEEEEEEEEEETTSC
T ss_pred --------eEEEccchHhcceEEEEECCCC
Confidence 8999999999999999998754
No 4
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.45 E-value=5.8e-13 Score=120.50 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=91.1
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecC----CCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCC------Cch
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNN----KTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLD------QDG 121 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~----~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~------~~~ 121 (344)
++.+|+|+ + .+.+||.+...+. .+|++. |+++||++.+++++|++++++..+...||. .|.
T Consensus 2 ~~~~l~v~------~-~~~~P~~~~~~~~~~~~~~g~~~--G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~ 72 (259)
T 3g3k_A 2 SNRSLIVT------T-ILEEPYVLFKKSDKPLYGNDRFE--GYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWN 72 (259)
T ss_dssp -CCCEEEE------E-CCBTTTBEECCCSSCCCGGGGEE--SHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBC
T ss_pred CCcEEEEE------E-ecCCCeEEEeecccccCCCceee--eEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcch
Confidence 46789999 7 5669998764310 136555 999999999999999999999988777775 367
Q ss_pred hhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCC
Q psy936 122 SIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRP 190 (344)
Q Consensus 122 g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~ 190 (344)
+++.++.+|++|+++++++.+.+|.+ .++||.||.....+++++++
T Consensus 73 ~~~~~l~~g~~D~~~~~~~~t~eR~~-----------------------~~~fs~py~~~~~~~~~~~~ 118 (259)
T 3g3k_A 73 GMVRELIDHKADLAVAPLAITYVREE-----------------------VIDFSKPFMTLGISILYRKG 118 (259)
T ss_dssp HHHHHHHTTSCSEECSSCBCCHHHHT-----------------------TEEECSCSEEECEEEEEESS
T ss_pred HHHHHHhcCcccEEEeeeEecccccc-----------------------eEeeeeeeeeCCEEEEEeCC
Confidence 99999999999999999999999999 99999999999999999876
No 5
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.28 E-value=9.1e-12 Score=116.26 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=83.9
Q ss_pred ceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCC----------Cchhh
Q psy936 54 LRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLD----------QDGSI 123 (344)
Q Consensus 54 ~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~----------~~~g~ 123 (344)
..|+|+ ...+++|+.+.+ .+| +..|+++||++++++++|++++++..+++.||. .|.++
T Consensus 41 ~~l~vg------~~~~~~P~~~~~---~~g--~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~ 109 (292)
T 1pb7_A 41 KVICTG------PNDTSPGSPRHT---VPQ--CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGM 109 (292)
T ss_dssp CEEEEE------EC--------CE---EEE--EEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHH
T ss_pred ceeecc------cCCCCCCccccc---ccc--CcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHH
Confidence 355565 434456665433 223 356999999999999999999999999888987 35699
Q ss_pred hhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCCC
Q psy936 124 MNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESA 194 (344)
Q Consensus 124 ~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~~ 194 (344)
+++|.+|++|+++++++++.+|.+ .++||.||+..+..++++++....
T Consensus 110 ~~~l~~g~~D~~~~~~~~t~~R~~-----------------------~~~fs~Py~~~~~~i~~~~~~~i~ 157 (292)
T 1pb7_A 110 MGELLSGQADMIVAPLTINNERAQ-----------------------YIEFSKPFKYQGLTILVKKGTRIT 157 (292)
T ss_dssp HHHHHHTSCSEECSSCBCCHHHHT-----------------------TEEECSCSEEEEEEEEEETTCCCC
T ss_pred HHHHHcCCcCEEEeeeEecHHHhc-----------------------ceEechhhHhcCeEEEEECCcCCC
Confidence 999999999999999999999998 999999999999999999876543
No 6
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.28 E-value=1.4e-11 Score=111.22 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=92.3
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecCCCCc-eEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCC-----Cchhhhh
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGK-LEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLD-----QDGSIMN 125 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~-~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~-----~~~g~~~ 125 (344)
+|++|+|+ + .+.+||.+.+.+ .+|+ -...|+++|+++.+++++|++++++..+++.||. .|.++++
T Consensus 1 ~~~~l~v~------~-~~~pP~~~~~~~-~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~ 72 (265)
T 2v3u_A 1 GGVVLRVV------T-VLEEPFVMVSEN-VLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVG 72 (265)
T ss_dssp CCCEEEEE------E-CCBTTTBEEECC-STTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHH
T ss_pred CCeEEEEE------E-eccCCeEEEecC-CCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHH
Confidence 47899999 7 455999976532 1121 2456999999999999999999999888777775 3669999
Q ss_pred hcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCC
Q psy936 126 ILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 126 ~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
++.+|++|++++++..+.+|.+ .++||.|+.....++++++...
T Consensus 73 ~l~~g~~D~~~~~~~~t~~R~~-----------------------~~~fs~p~~~~~~~~~~~~~~~ 116 (265)
T 2v3u_A 73 ELVFKRADIGISALTITPDREN-----------------------VVDFTTRYMDYSVGVLLRRGTS 116 (265)
T ss_dssp HHHTTSCSEECSSCBCCHHHHT-----------------------TEEECSCSEEECEEEEEETTCC
T ss_pred HHHcCCcCeEEeeeEeehhhhc-----------------------cccccceeeeccEEEEEECCCC
Confidence 9999999999988999999988 9999999999999999998754
No 7
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.26 E-value=1.6e-11 Score=113.89 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=77.7
Q ss_pred EEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCC----chhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHH
Q psy936 86 EGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQ----DGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELK 161 (344)
Q Consensus 86 ~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~----~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~ 161 (344)
+..|+++|+++++++++|++++++..+++.||.. |.+++++|.+|++|+++++++++.+|.+
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~-------------- 121 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSE-------------- 121 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHT--------------
T ss_pred eeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccc--------------
Confidence 4679999999999999999999999888888872 6799999999999999999999999988
Q ss_pred HHhhhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 162 LQLQQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 162 ~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
.++||.|+..++.+++++++...
T Consensus 122 ---------~~~fs~p~~~~~~~~~~~~~~~~ 144 (284)
T 2a5s_A 122 ---------VVDFSVPFVETGISVMVSRGTQV 144 (284)
T ss_dssp ---------TEEECCCCEEECEEEEEETTCCC
T ss_pred ---------eEEeccCchhcCEEEEEECCccc
Confidence 99999999999999999987653
No 8
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.19 E-value=4.8e-11 Score=108.05 Aligned_cols=110 Identities=10% Similarity=0.177 Sum_probs=90.9
Q ss_pred CCceEEEEecCCCcccccCCCceeeeec----CCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCC------Cch
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTN----NKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLD------QDG 121 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~----~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~------~~~ 121 (344)
++.+|+|+ + .+.+||.+...+ +++|+. .|+++|+++.+++++|++++++..+++.||. .|.
T Consensus 2 ~~~~l~v~------~-~~~pP~~~~~~~~~~~~~~g~~--~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~ 72 (263)
T 1mqi_A 2 ANKTVVVT------T-ILESPYVMMKKNHEMLEGNERY--EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 72 (263)
T ss_dssp -CCCEEEE------E-CCBTTTBEECTTGGGCCGGGGE--ESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBC
T ss_pred CCeEEEEE------E-ecCCCcEEEecCcccccCCCce--eeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcH
Confidence 35789999 7 568999975421 013655 4999999999999999999999887666665 356
Q ss_pred hhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 122 SIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 122 g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
+++.+|.+|++|++++++..+.+|.+ .++||.|+.....++++++....
T Consensus 73 ~~~~~l~~g~~D~~~~~~~~t~~R~~-----------------------~~~fs~p~~~~~~~~~~~~~~~i 121 (263)
T 1mqi_A 73 GMVGELVYGKADIAIAPLTITLVREE-----------------------VIDFSKPFMSLGISIMIKKGTPI 121 (263)
T ss_dssp HHHHHHHTTSCSEECSSCBCCHHHHT-----------------------TEEECSCSEEECEEEEEETTCSC
T ss_pred HHHHHHHcCCcCEEEEeeEecHHHHh-----------------------hcccccceecccEEEEEcCcccc
Confidence 89999999999999988999999988 89999999999999999987643
No 9
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.12 E-value=1e-10 Score=105.46 Aligned_cols=101 Identities=14% Similarity=0.261 Sum_probs=85.7
Q ss_pred ceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceec
Q psy936 54 LRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVD 133 (344)
Q Consensus 54 ~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~D 133 (344)
.+|+|| +..++|||++....+++|+ ..|+++||++.+++++|.+++++..+ |.+++..+.+|++|
T Consensus 12 g~L~Vg------~~~~~pP~~~~~~~d~~g~--~~G~~vdl~~~ia~~lg~~~~~~~~~-------~~~~~~~l~~g~~d 76 (243)
T 4h5g_A 12 GKLVVA------TSPDYAPFEFQSLVDGKNQ--VVGADIDMAQAIADELGVKLEILSMS-------FDNVLTSLQTGKAD 76 (243)
T ss_dssp TEEEEE------ECCCBTTTBEEEEETTEEE--EESHHHHHHHHHHHHHTSEEEEEECC-------GGGHHHHHHTTSCS
T ss_pred CEEEEE------ECCCCCCcEeeeccCCCCc--EEEeHHHHHHHHHHHhCCceEEeccc-------HHHHHHHHHcCCCC
Confidence 579999 6567899997643344554 45999999999999999999988743 45799999999999
Q ss_pred EEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCC
Q psy936 134 MVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 134 i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
++++++..+.+|.+ .++||.|++....++++++.+.
T Consensus 77 ~~~~~~~~t~eR~~-----------------------~~~fs~py~~~~~~~~v~~~~~ 112 (243)
T 4h5g_A 77 LAVAGISATDERKE-----------------------VFDFSIPYYENKISFLVHKADV 112 (243)
T ss_dssp EECSSCBCCHHHHT-----------------------TEEECSCSBCCCEEEEEEGGGT
T ss_pred cccccccCChhHcc-----------------------EEEccCccccCccccccccccc
Confidence 99999999999998 9999999999999999987643
No 10
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.11 E-value=4.3e-10 Score=100.48 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=84.4
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccccee
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEV 132 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~ 132 (344)
..+|+|+ +..+.+||.+.+ ++|+. .|+++|+++.+++++|++++++..+ +..++.++.+|++
T Consensus 4 ~~~l~v~------~~~~~~P~~~~~---~~g~~--~G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~~ 65 (245)
T 3k4u_A 4 RGELRVG------LEPGYLPFEMKD---KKGNV--IGFDVDLAREMAKAMGVKLKLVPTS-------WDGLIPGLVTEKF 65 (245)
T ss_dssp CSEEEEE------ECTTSTTTCEEE---TTTEE--ESHHHHHHHHHHHHHTCEEEEEECC-------GGGHHHHHHTTSC
T ss_pred CCeEEEE------ECCCcCCeeEEC---CCCCC--ccchHHHHHHHHHHhCCeEEEEEcc-------HHHHHHHHhCCCc
Confidence 4689999 634789999754 56754 4999999999999999999998753 4579999999999
Q ss_pred cEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCC
Q psy936 133 DMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH 191 (344)
Q Consensus 133 Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~ 191 (344)
|++++++..+.+|.. .+.||.|+.....++++++.+
T Consensus 66 D~~~~~~~~t~~r~~-----------------------~~~~s~p~~~~~~~~~~~~~~ 101 (245)
T 3k4u_A 66 DIIISGMTISQERNL-----------------------RVNFVEPYIVVGQSLLVKKGL 101 (245)
T ss_dssp SEECSSCBCCHHHHT-----------------------TSEECSCSEEECEEEEEETTT
T ss_pred CEEEecCcCCHHHHh-----------------------hcCcchhhheeceEEEEECCc
Confidence 999888999999988 899999999999999998774
No 11
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.06 E-value=2e-10 Score=103.49 Aligned_cols=100 Identities=12% Similarity=0.212 Sum_probs=80.2
Q ss_pred CCCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhccc
Q psy936 51 IEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKT 129 (344)
Q Consensus 51 l~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~ 129 (344)
-+..+|+|| +..++|||++.+ ++|++. |+++||++++++++ |.+++++..+ |.+++..|.+
T Consensus 6 ~~~~tl~vg------~~~~~pP~~~~d---~~G~~~--G~~vdl~~~ia~~l~g~~~~~~~~~-------~~~~~~~l~~ 67 (243)
T 4gvo_A 6 QKVQTITVG------TGTQFPNVCFLD---ENGKLT--GYDVELVKEIDKRLPGYKFKFKTMD-------FSNLLVSLGA 67 (243)
T ss_dssp --CEEEEEE------ECSEETTTEEEC---TTSCEE--SHHHHHHHHHHHTCTTEEEEEEECC-------GGGHHHHHHT
T ss_pred ccCCeEEEE------ECCCCCCeEEEC---CCCcEE--EhHHHHHHHHHHhccCCeEEEEECC-------HHHHHHHHHC
Confidence 356789999 756789999764 678765 99999999999998 8999987743 4578999999
Q ss_pred ceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccc-eeEEEEeCCC
Q psy936 130 GEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQS-QYVVMMKRPH 191 (344)
Q Consensus 130 g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~-~~~~~v~~~~ 191 (344)
|++|++++++..+.+|.+ .++||.|++.. ...+++++.+
T Consensus 68 g~~D~~~~~~~~t~eR~~-----------------------~~~fs~p~~~~~~~~~~~~~~~ 107 (243)
T 4gvo_A 68 GKVDIVAHQMEKSKEREK-----------------------KFLFNDVAYNNFPLQLTVLDSN 107 (243)
T ss_dssp TSCSEECSCCBCCHHHHH-----------------------HSEECSSCCEECCEEEEEETTC
T ss_pred CCCCEecccCCCCHHHhh-----------------------hhhhhhhhcccccceEEEeccc
Confidence 999999999999999998 89999986655 4445555443
No 12
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.00 E-value=1.7e-09 Score=94.88 Aligned_cols=101 Identities=11% Similarity=0.220 Sum_probs=81.2
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccccee
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEV 132 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~ 132 (344)
..+|+|+ + .+.+||.+... +++|+. .|+++|+++.+++++|++++++..+ .+..++..+.+|++
T Consensus 3 ~~~l~v~------~-~~~~P~~~~~~-~~~g~~--~G~~~dl~~~i~~~~g~~~~~~~~~------~~~~~~~~l~~g~~ 66 (233)
T 1ii5_A 3 AMALKVG------V-VGNPPFVFYGE-GKNAAF--TGISLDVWRAVAESQKWNSEYVRQN------SISAGITAVAEGEL 66 (233)
T ss_dssp SCCEEEE------E-CCCTTTCEEC------CE--ESHHHHHHHHHHHHHTCCEEEEECS------CHHHHHHHHHTTSC
T ss_pred CceEEEE------e-cCCCCeEEEec-CCCCCE--EEEeHHHHHHHHHHcCCcEEEEEeC------CHHHHHHHHHCCCc
Confidence 3579999 6 45899997521 145655 4999999999999999999998753 23579999999999
Q ss_pred cEEEeeccchhhhh--HHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCC
Q psy936 133 DMVAAFVPVLNIKK--NKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 133 Di~~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
|++++++..+.+|. . .++|+.|+.....++++++.+.
T Consensus 67 D~~~~~~~~~~~r~~~~-----------------------~~~~s~p~~~~~~~~~~~~~~~ 105 (233)
T 1ii5_A 67 DILIGPISVTPERAAIE-----------------------GITFTQPYFSSGIGLLIPGTAT 105 (233)
T ss_dssp SEEEEEEECCHHHHTST-----------------------TEEECCCCEEEEEEEEEEGGGT
T ss_pred CEEEeeeecCccccccc-----------------------eeEEccceeecCeEEEEECCCC
Confidence 99998888888887 7 8999999999999999987653
No 13
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=98.99 E-value=2.2e-09 Score=97.31 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=83.4
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccce
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
+..+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|++++++..+ +..++.++.+|+
T Consensus 19 ~~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~ 80 (268)
T 3hv1_A 19 KEKKIKIG------FDATFVPMGYEE---KDGSYI--GFDIDLANAVFKLYGIDVEWQAID-------WDMKETELKNGT 80 (268)
T ss_dssp HHTEEEEE------ECTEETTTEEEC---TTSCEE--CHHHHHHHHHHHTTTCEEEEEECC-------GGGHHHHHHHTS
T ss_pred cCCcEEEE------ECCCCCCceEEC---CCCCEE--EehHHHHHHHHHHhCCcEEEEECC-------HHHHHHHHHCCC
Confidence 34789999 645679999753 567655 999999999999999999998753 347999999999
Q ss_pred ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeC
Q psy936 132 VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKR 189 (344)
Q Consensus 132 ~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~ 189 (344)
+|++++++..+.+|.. .+.|+.|+.....++++++
T Consensus 81 ~D~~~~~~~~t~~r~~-----------------------~~~fs~p~~~~~~~~~~~~ 115 (268)
T 3hv1_A 81 IDLIWNGYSVTDERKQ-----------------------SADFTEPYMVNEQVLVTKK 115 (268)
T ss_dssp CSEECSSCBCCHHHHT-----------------------TCEECCCCEEECEEEEEEG
T ss_pred CCEEEecCccCHHHHh-----------------------cCcCcHHHeeCceEEEEEC
Confidence 9999988998999988 8999999999999999986
No 14
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=98.98 E-value=2.8e-09 Score=95.59 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=82.9
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCc-EEEEeeCCCCCCCCchhhhhhcccce
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFS-YEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft-~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
..+|+|+ + .+.+||.+.+ ++|+.. |+++|+++.+++++|.+ ++++..+ |..++..+.+|+
T Consensus 12 ~~~l~v~------~-~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~~-------~~~~~~~l~~g~ 72 (257)
T 2q88_A 12 QGFARIA------I-ANEPPFTAVG---ADGKVS--GAAPDVAREIFKRLGVADVVASISE-------YGAMIPGLQAGR 72 (257)
T ss_dssp HTEEEEE------E-CCCTTTCEEC---TTCCEE--SHHHHHHHHHHHHTTCCEEEEEECC-------GGGHHHHHHTTS
T ss_pred CCeEEEE------c-CCCCCeeEEC---CCCCcc--cccHHHHHHHHHHcCCCeeeEEeCC-------HHHHHHHHHCCC
Confidence 4689999 7 4889999753 467655 99999999999999998 8887642 347899999999
Q ss_pred ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCC
Q psy936 132 VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 132 ~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
+|++++++..+.+|.. .++|+.|+.....++++++...
T Consensus 73 ~D~~~~~~~~t~~r~~-----------------------~~~~s~p~~~~~~~~~~~~~~~ 110 (257)
T 2q88_A 73 HDAITAGLFMKPERCA-----------------------AVAYSQPILCDAEAFALKKGNP 110 (257)
T ss_dssp CSEECSCCBCCHHHHT-----------------------TSEECSCCCEECEEEEEETTCT
T ss_pred cCEEEecccCCHHHHh-----------------------ccccccchhcCceEEEEECCCc
Confidence 9999888888889888 8999999999999999987653
No 15
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=98.94 E-value=1.6e-09 Score=96.58 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=83.4
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccccee
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEV 132 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~ 132 (344)
..+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|++++++..+ |..++.++.+|++
T Consensus 4 a~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~~ 65 (232)
T 3i6v_A 4 ADTVRMG------TEGAYPPYNFIN---DAGEVD--GFERELGDELCKRAGLTCEWVKND-------WDSIIPNLVSGNY 65 (232)
T ss_dssp --CEEEE------ECSEETTTEEEC---TTSCEE--SHHHHHHHHHHHHHTCCEEEEECC-------GGGHHHHHHTTSC
T ss_pred CCEEEEE------ECCCCCCeeEEC---CCCCEe--eehHHHHHHHHHHcCCceEEEECC-------HHHHHHHHHCCCC
Confidence 3679999 644679999753 567655 999999999999999999998742 4578999999999
Q ss_pred cEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCC
Q psy936 133 DMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH 191 (344)
Q Consensus 133 Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~ 191 (344)
|++++++..+.+|.. .++||.|+.....++++++..
T Consensus 66 D~~~~~~~~t~~r~~-----------------------~~~fs~p~~~~~~~~~~~~~~ 101 (232)
T 3i6v_A 66 DTIIAGMSITDERDE-----------------------VIDFTQNYIPPTASSYVATSD 101 (232)
T ss_dssp SEECSSCBCCHHHHT-----------------------TSEEEEEEECCCEEEEEESST
T ss_pred CEEEeCCcCCHHHHh-----------------------hcCcccccccCCeEEEEECCC
Confidence 999999999999988 899999999999999998765
No 16
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=98.92 E-value=7.1e-09 Score=92.82 Aligned_cols=97 Identities=11% Similarity=0.177 Sum_probs=82.4
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccce
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
...+|+|+ +..+.+||.+. ++|+.. |+++|+++.+++++|++++++..+ +..++.++.+|+
T Consensus 22 ~~~~l~v~------~~~~~~P~~~~----~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~ 82 (249)
T 4f3p_A 22 MAKELVVG------TDTSFMPFEFK----QGDKYV--GFDLDLWAEIAKGAGWTYKIQPMD-------FAGLIPALQTQN 82 (249)
T ss_dssp --CCEEEE------EESCBTTTBEE----ETTEEE--SHHHHHHHHHHHHHTCCEEEEEEC-------GGGHHHHHHTTS
T ss_pred cCceEEEE------eCCCCCCeEEe----cCCeEE--EEhHHHHHHHHHHcCCceEEEecC-------HHHHHHHHHCCC
Confidence 35789999 64478999974 356544 999999999999999999998853 347899999999
Q ss_pred ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCC
Q psy936 132 VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRP 190 (344)
Q Consensus 132 ~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~ 190 (344)
+|++++++..+.+|.. .+.|+.|+.....++++++.
T Consensus 83 ~D~~~~~~~~~~~r~~-----------------------~~~~s~p~~~~~~~~~~~~~ 118 (249)
T 4f3p_A 83 IDVALSGMTIKEERRK-----------------------AIDFSDPYYDSGLAAMVQAN 118 (249)
T ss_dssp CSEEEEEEECCHHHHT-----------------------TEEECSCCEEEEEEEEEETT
T ss_pred CCEEEeccccCHHHHc-----------------------CcceecceeeccEEEEEECC
Confidence 9999888988999988 89999999999999999876
No 17
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.89 E-value=3.3e-09 Score=92.52 Aligned_cols=97 Identities=12% Similarity=0.273 Sum_probs=77.2
Q ss_pred ceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceec
Q psy936 54 LRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVD 133 (344)
Q Consensus 54 ~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~D 133 (344)
.+|+|+ + .+.+||.+. ++|+. .|+++|+++.+++++|++++++..+. +..++..+.+|++|
T Consensus 3 ~~l~v~------~-~~~~P~~~~----~~g~~--~G~~~dl~~~~~~~~g~~~~~~~~~~------~~~~~~~l~~g~~D 63 (228)
T 2pyy_A 3 QPLLVA------T-RVIPPFVLS----NKGEL--SGFSIDLWRSIATQIGIESKLIEYSS------VPELISAIKDNKVN 63 (228)
T ss_dssp -CEEEE------E-CCBTTTBBC----C---C--BSHHHHHHHHHHHHHTCCEEEEECSS------HHHHHHHHHTTSCS
T ss_pred ceEEEE------e-cCCCCeEEe----cCCce--EEEeHHHHHHHHHHhCCcEEEEEcCC------HHHHHHHHHCCCcC
Confidence 478999 7 468999864 35544 59999999999999999999987542 24789999999999
Q ss_pred EEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCC
Q psy936 134 MVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 134 i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
++++++..+.+|.. .+.|+.|+.....++++++.+.
T Consensus 64 ~~~~~~~~~~~r~~-----------------------~~~~~~p~~~~~~~~~~~~~~~ 99 (228)
T 2pyy_A 64 LGIAAISITAEREQ-----------------------NFDFSLPIFASGLQIMVRNLES 99 (228)
T ss_dssp EECSSCBCCHHHHH-----------------------HSEECSCSEEEEEEEEEEC---
T ss_pred EEEeccccCHHHHc-----------------------cceecccchhcceEEEEECCcc
Confidence 99888888888887 7899999999999999988754
No 18
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=98.86 E-value=5.2e-09 Score=95.31 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=82.2
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccccee
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEV 132 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~ 132 (344)
..+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|.+++++..+. +..++.++.+|++
T Consensus 31 ~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~lg~~~~~~~~~~------~~~~~~~l~~G~~ 93 (267)
T 3mpk_A 31 HPVVKVA------VLNLFAPFTLFR---TDEQFG--GISAAVLQLLQLRTGLDFEIIGVDT------VEELIAKLRSGEA 93 (267)
T ss_dssp CSEEEEE------EETEETTTEECC---TTCCCB--SHHHHHHHHHHHHHCCEEEEEEESS------HHHHHHHHHHTSC
T ss_pred CCcEEEE------eCCCCCCeEEEC---CCCcEe--eeHHHHHHHHHHHHCCeEEEEecCC------HHHHHHHHHCCCc
Confidence 4789999 645579999653 567654 9999999999999999999986432 3479999999999
Q ss_pred cEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCC
Q psy936 133 DMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH 191 (344)
Q Consensus 133 Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~ 191 (344)
|+++ ++..+.+|.. .+.||.|+.....++++++..
T Consensus 94 D~~~-~~~~t~~r~~-----------------------~~~fs~p~~~~~~~l~~~~~~ 128 (267)
T 3mpk_A 94 DMAG-ALFVNSARES-----------------------FLSFSRPYVRNGMVIVTRQDP 128 (267)
T ss_dssp SEEE-EEECCGGGTT-----------------------TEEECSCSEEECEEEEEESST
T ss_pred cEEe-cccCChhhhc-----------------------ceEechhhccCceEEEEECCC
Confidence 9975 7888889988 999999999999999998764
No 19
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=98.86 E-value=1.3e-08 Score=88.69 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=80.5
Q ss_pred ceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceec
Q psy936 54 LRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVD 133 (344)
Q Consensus 54 ~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~D 133 (344)
.+|+|+ +..+.+||.+.+ +|+ ..|+++|+++.+++++|.+++++..+ +..++..+.+|++|
T Consensus 3 ~~l~v~------~~~~~~P~~~~~----~g~--~~G~~~dl~~~~~~~~g~~~~~~~~~-------~~~~~~~l~~g~~D 63 (226)
T 1wdn_A 3 KKLVVA------TDTAFVPFEFKQ----GDL--YVGFDVDLWAAIAKELKLDYELKPMD-------FSGIIPALQTKNVD 63 (226)
T ss_dssp -CEEEE------EESSBTTTBEEE----TTE--EESHHHHHHHHHHHHHTCCEEEEEEC-------GGGHHHHHHTTSSS
T ss_pred ceEEEE------ECCCCCCeeEec----CCc--EEEeeHHHHHHHHHHhCCEEEEEECC-------HHHHHHHHhCCCCC
Confidence 478999 645789998653 364 45999999999999999999988642 34789999999999
Q ss_pred EEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCC
Q psy936 134 MVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH 191 (344)
Q Consensus 134 i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~ 191 (344)
++++++..+.+|.. .+.|+.|+.....++++++.+
T Consensus 64 ~~~~~~~~~~~r~~-----------------------~~~~~~p~~~~~~~~~~~~~~ 98 (226)
T 1wdn_A 64 LALAGITITDERKK-----------------------AIDFSDGYYKSGLLVMVKANN 98 (226)
T ss_dssp EEEEEEECCHHHHT-----------------------TSEECSCCEEEEEEEEEETTC
T ss_pred EEEEcCcCCHHHhC-----------------------ccccccchhcCceEEEEeCCC
Confidence 99888888888887 889999999999999998775
No 20
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=98.85 E-value=6.7e-09 Score=92.17 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=84.9
Q ss_pred ceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceec
Q psy936 54 LRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVD 133 (344)
Q Consensus 54 ~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~D 133 (344)
.+|+|+ +..+.+||.+.. +++|+.. |+++|+++.+++++|++++++..+ +..++.++.+|++|
T Consensus 3 ~~l~v~------~~~~~~P~~~~~--~~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~~D 65 (237)
T 3kzg_A 3 LNLTIG------TSKFNPPFEVWS--GNNSSLY--GFDIDLMQEICRRLHATCTFEAYI-------FDDLFPALKNREVD 65 (237)
T ss_dssp CEEEEE------EESEETTTEECC--CTTSCCB--SHHHHHHHHHHHHTTCEEEEEEEC-------GGGHHHHHHTTSSS
T ss_pred ceEEEE------ECCCCCCeEEEe--CCCCCEe--eehHHHHHHHHHHhCCceEEEEcC-------HHHHHHHHhCCCCC
Confidence 579999 645589999651 2567654 999999999999999999998753 34799999999999
Q ss_pred EEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 134 MVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 134 i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
++++++..+.+|.. .++|+.|+.....++++++....
T Consensus 66 ~~~~~~~~~~~r~~-----------------------~~~fs~p~~~~~~~~~~~~~~~~ 102 (237)
T 3kzg_A 66 LVIASMIITDERKK-----------------------HFIFSLPYMESNSQYITTVDSKI 102 (237)
T ss_dssp EECSSCBCCTTGGG-----------------------TCEECCCSBCCEEEEEEETTCSC
T ss_pred EEEEccccChhHhc-----------------------cceeeeeeeecceEEEEECCCCC
Confidence 99999999999988 89999999999999999987653
No 21
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=98.83 E-value=9.7e-09 Score=90.72 Aligned_cols=100 Identities=10% Similarity=0.175 Sum_probs=84.3
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccccee
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEV 132 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~ 132 (344)
..+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|.+++++..+ |..++..+.+|++
T Consensus 3 ~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~~ 64 (239)
T 1lst_A 3 PQTVRIG------TDTTYAPFSSKD---AKGEFI--GFDIDLGNEMCKRMQVKCTWVASD-------FDALIPSLKAKKI 64 (239)
T ss_dssp CSEEEEE------ECSCBTTTBEEC---TTCCEE--SHHHHHHHHHHHHHTCEEEEEECC-------GGGHHHHHHTTSC
T ss_pred cceEEEE------ECCCcCCeeEEC---CCCCEe--eEHHHHHHHHHHHHCCeEEEEeCC-------HHHHHHHHhCCCC
Confidence 3579999 645689999653 467655 999999999999999999988642 3479999999999
Q ss_pred cEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 133 DMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 133 Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
|++++++..+.+|.. .++|+.|+.....++++++.+..
T Consensus 65 D~~~~~~~~t~~r~~-----------------------~~~~s~p~~~~~~~l~~~~~~~~ 102 (239)
T 1lst_A 65 DAIISSLSITDKRQQ-----------------------EIAFSDKLYAADSRLIAAKGSPI 102 (239)
T ss_dssp SEECSSCBCCHHHHH-----------------------HCEECSCSBCCCEEEEEETTCCC
T ss_pred CEEEECcCcCHHHhh-----------------------ceeecccceeCceEEEEeCCCCC
Confidence 999988888899988 88999999999999999987654
No 22
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=98.83 E-value=1.1e-08 Score=89.06 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=83.3
Q ss_pred ceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceec
Q psy936 54 LRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVD 133 (344)
Q Consensus 54 ~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~D 133 (344)
.+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|.+++++..+ +..++.++.+|++|
T Consensus 2 ~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~~D 63 (227)
T 3tql_A 2 DTIKFA------TEATYPPYVYMG---PSGQVE--GFGADIVKAVCKQMQAVCTISNQP-------WDSLIPSLKLGKFD 63 (227)
T ss_dssp CEEEEE------ECSCBTTTBEEC-----CCEE--SHHHHHHHHHHHHTTCEEEEEECC-------HHHHHHHHHHTSCS
T ss_pred ceEEEE------EcCCCCCeeEEC---CCCCcc--cchHHHHHHHHHHhCCeEEEEeCC-------HHHHHHHHhCCCCC
Confidence 579999 644689999753 467654 999999999999999999998742 45789999999999
Q ss_pred EEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 134 MVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 134 i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
++++++..+.+|.. .+.|+.|+.....++++++....
T Consensus 64 ~~~~~~~~~~~r~~-----------------------~~~~s~p~~~~~~~l~~~~~~~~ 100 (227)
T 3tql_A 64 ALFGGMNITTARQK-----------------------EVDFTDPYYTNSVSFIADKNTPL 100 (227)
T ss_dssp EECSSCBCCTTGGG-----------------------TEEECSCSBCCEEEEEEETTSCC
T ss_pred EEEecCcCCHhHHh-----------------------heecccceeccceEEEEeCCCCC
Confidence 99888888999988 89999999999999999987654
No 23
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=98.82 E-value=6.4e-09 Score=92.07 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=83.9
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccccee
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEV 132 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~ 132 (344)
..+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|++++++..+ +..++.++.+|++
T Consensus 14 ~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~~ 75 (239)
T 3kbr_A 14 SGVLRVA------TTGDYKPFSYRT---EEGGYA--GFDVDMAQRLAESLGAKLVVVPTS-------WPNLMRDFADDRF 75 (239)
T ss_dssp HTEEEEE------ECSEETTTEEEC---TTSCEE--SHHHHHHHHHHHHTTCEEEEEECC-------TTTHHHHHHTTCC
T ss_pred CCeEEEE------ECCCCCCeeEEC---CCCCEE--eehHHHHHHHHHHHCCceEEEEeC-------HHHHHHHHHCCCc
Confidence 4789999 645679999653 477655 999999999999999999998752 3468999999999
Q ss_pred cEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCC
Q psy936 133 DMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH 191 (344)
Q Consensus 133 Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~ 191 (344)
|++++++..+.+|.. .++||.|+.....++++++.+
T Consensus 76 D~~~~~~~~t~~r~~-----------------------~~~fs~p~~~~~~~~~~~~~~ 111 (239)
T 3kbr_A 76 DIAMSGISINLERQR-----------------------QAYFSIPYLRDGKTPITLCSE 111 (239)
T ss_dssp SEECSSCBCCHHHHT-----------------------TCEECSCSEEECEEEEEEGGG
T ss_pred CEEEeCCcCCHHHcC-----------------------ccccchHHhccCcEEEEECCc
Confidence 999888999999988 899999999999999998764
No 24
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=98.77 E-value=2.1e-08 Score=90.65 Aligned_cols=100 Identities=15% Similarity=0.269 Sum_probs=84.8
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccce
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
...+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|.+++++..+ +..++..+.+|+
T Consensus 27 ~~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~ 88 (259)
T 4dz1_A 27 EGRTLNVA------VSPASPPMLFKS---ADGKLQ--GIDLELFSSYCQSRHCKLNITEYA-------WDGMLGAVASGQ 88 (259)
T ss_dssp TTCEEEEE------ECCCBTTTBEEC---TTCCEE--SHHHHHHHHHHHHHTCEEEEEECC-------HHHHHHHHHHTS
T ss_pred cCCeEEEE------ECCCCCCeEEEC---CCCCEE--EeHHHHHHHHHHHhCCeEEEEEcC-------HHHHHHHHhCCC
Confidence 34789999 645679998653 567655 999999999999999999987742 457899999999
Q ss_pred ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCC
Q psy936 132 VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 132 ~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
+|++++++..+.+|.+ .++|+.|+......+++++.+.
T Consensus 89 ~D~~~~~~~~t~~r~~-----------------------~~~fs~p~~~~~~~~~~~~~~~ 126 (259)
T 4dz1_A 89 ADVAFSGISITDKRKK-----------------------VIDFSEPYYINSFYLVSMANHK 126 (259)
T ss_dssp SSEEEEEEECCHHHHT-----------------------TEEECCCSEEEEEEEEEETTSC
T ss_pred CCEEEECCcCCHHHhh-----------------------ccccccchhhCceEEEEEcCCC
Confidence 9999999999999988 9999999999999999987643
No 25
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=98.72 E-value=3.8e-08 Score=87.21 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=82.3
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccce
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
+..+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|.+++++..+ +..++..+.+|+
T Consensus 9 ~~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~ 70 (242)
T 3del_B 9 NSEKFIVG------TNATYPPFEFVD---KRGEVV--GFDIDLAREISNKLGKTLDVREFS-------FDALILNLKQHR 70 (242)
T ss_dssp --CEEEEE------ECSCBTTTBEEC---TTSCEE--SHHHHHHHHHHHHHTCEEEEEECC-------GGGHHHHHHTTS
T ss_pred cCCcEEEE------eCCCCCCeeEEC---CCCCEE--EeeHHHHHHHHHHcCCceEEEEcC-------HHHHHHHHhCCC
Confidence 34689999 645789999653 567655 999999999999999999998752 347999999999
Q ss_pred ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeec--cceeEEEEeCCCC
Q psy936 132 VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELG--QSQYVVMMKRPHE 192 (344)
Q Consensus 132 ~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~--~~~~~~~v~~~~~ 192 (344)
+|++++++..+.+|.. .++| .|+. ....++++++...
T Consensus 71 ~D~~~~~~~~~~~r~~-----------------------~~~~-~p~~~~~~~~~~~~~~~~~ 109 (242)
T 3del_B 71 IDAVITGMSITPSRLK-----------------------EILM-IPYYGEEIKHLVLVFKGEN 109 (242)
T ss_dssp SSEECSSBBCCHHHHT-----------------------TEEE-EEEEEEEESEEEEEEESCC
T ss_pred cCEEEecCcCCHHHHh-----------------------cccc-eeeeecCCceEEEEeCCCC
Confidence 9999988999999988 8999 9999 8888999987633
No 26
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=98.72 E-value=4e-08 Score=89.54 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=83.4
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCC--CceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccc
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKT--GKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTG 130 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~--g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g 130 (344)
..+|+|+ +..+.+||.+.+. ++ |+ ..|+++|+++.+++++|.+++++..+ +..++..+.+|
T Consensus 20 ~~~l~v~------~~~~~pP~~~~~~--~~~~g~--~~G~~~dl~~~i~~~~g~~v~~~~~~-------~~~~~~~l~~G 82 (271)
T 2iee_A 20 KGKIVVA------TSGTLYPTSYHDT--DSGSDK--LTGYEVEVVREAAKRLGLKVEFKEMG-------IDGMLTAVNSG 82 (271)
T ss_dssp HTEEEEE------ECSCBTTTBEEET--TTTCCE--EECHHHHHHHHHHHHTTCEEEEEECC-------STTHHHHHHHT
T ss_pred CCeEEEE------ECCCCCCeeEeCC--CCCCCC--ceeeHHHHHHHHHHHcCCeEEEEECC-------HHHHHHHHHCC
Confidence 4789999 6447899997542 22 64 45999999999999999999998752 24689999999
Q ss_pred eecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCC
Q psy936 131 EVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH 191 (344)
Q Consensus 131 ~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~ 191 (344)
++|++++++..+.+|.. .++|+.|+.....++++++..
T Consensus 83 ~~D~~~~~~~~t~~r~~-----------------------~~~fs~p~~~~~~~l~~~~~~ 120 (271)
T 2iee_A 83 QVDAAANDIDVTKDREE-----------------------KFAFSTPYKYSYGTAIVRKDD 120 (271)
T ss_dssp SSSEECSSCBCCHHHHT-----------------------TEEECCCSEEEEEEEEECTTT
T ss_pred CcCEEEeCCcCChhhcc-----------------------ceEEeecceeCCeEEEEECCC
Confidence 99999988888899988 899999999999999998775
No 27
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=98.71 E-value=2.7e-08 Score=88.04 Aligned_cols=95 Identities=12% Similarity=0.273 Sum_probs=82.2
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCC-CcEEEEeeCCCCCCCCchhhhhhcccce
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYE-FSYEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~ln-ft~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
..+|+|+ +..+.+||.+ . ++|+. .|+++|+++.+++++| ++++++..+ +..++.++.+|+
T Consensus 7 ~~~l~v~------~~~~~~P~~~-~---~~g~~--~G~~~dl~~~i~~~~g~~~~~~~~~~-------~~~~~~~l~~g~ 67 (246)
T 4eq9_A 7 KKEIIVA------TNGSPRPFIY-E---ENGEL--TGYEIEVVRAIFKDSDKYDVKFEKTE-------WSGVFAGLDADR 67 (246)
T ss_dssp CEEEEEE------ECCCSTTTSE-E---ETTEE--ESHHHHHHHHHHTTCSSEEEEEEECC-------HHHHHHHHHTTS
T ss_pred CCEEEEE------eCCCcCCeEE-c---CCCCC--cccHHHHHHHHHHHcCCceEEEEeCC-------HHHHHHHHhCCC
Confidence 4679999 6457899996 2 46755 4999999999999999 999988752 457899999999
Q ss_pred ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeC
Q psy936 132 VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKR 189 (344)
Q Consensus 132 ~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~ 189 (344)
+|++++++..+.+|.. .+.|+.|+.....++++++
T Consensus 68 ~D~~~~~~~~~~~r~~-----------------------~~~~s~p~~~~~~~~~~~~ 102 (246)
T 4eq9_A 68 YNMAVNNLSYTKERAE-----------------------KYLYAAPIAQNPNVLVVKK 102 (246)
T ss_dssp CSEECSSCCCCHHHHH-----------------------HEEECCCCEECCEEEEEET
T ss_pred cCEEecccccChhhhh-----------------------ceeeccceecCceEEEEEC
Confidence 9999988888999988 8999999999999999998
No 28
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=98.69 E-value=5.9e-08 Score=84.90 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=83.0
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccce
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
+..+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|++++++..+ +..++..+.+|+
T Consensus 4 ~a~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~ 65 (229)
T 2y7i_A 4 SARTLHFG------TSATYAPYEFVD---ADNKIV--GFDIDVANAVCKEMQAECSFTNQS-------FDSLIPSLRFKK 65 (229)
T ss_dssp SCCEEEEE------ECCCBTTTBEEC---TTSCEE--SHHHHHHHHHHHHTTCEEEEEECC-------GGGHHHHHHTTS
T ss_pred cCCcEEEE------eCCCcCCceEEC---CCCCCc--ceeHHHHHHHHHHhCCeEEEEEcC-------HHHHHHHHhCCC
Confidence 45789999 644789998643 457654 999999999999999999988742 347899999999
Q ss_pred ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccc-eeEEEEeCCC
Q psy936 132 VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQS-QYVVMMKRPH 191 (344)
Q Consensus 132 ~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~-~~~~~v~~~~ 191 (344)
+|++++++..+.+|.. .+.|+.|+... ..++++++..
T Consensus 66 ~D~~~~~~~~~~~r~~-----------------------~~~~s~p~~~~~~~~~~~~~~~ 103 (229)
T 2y7i_A 66 FDAVIAGMDMTPKREQ-----------------------QVSFSQPYYEGLSAVVVTRKGA 103 (229)
T ss_dssp CSEECSSCBCCHHHHT-----------------------TSEECSCSBCCCCEEEEEETTS
T ss_pred ceEEEecCccCHHHhc-----------------------ceeeccccccCCcEEEEEeCCC
Confidence 9999878888888887 88999999999 9999999876
No 29
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=98.69 E-value=7.7e-08 Score=84.25 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=83.1
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccce
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
...+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.+++++|.+++++..+ +..++..+.+|+
T Consensus 9 ~~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~ 70 (234)
T 3h7m_A 9 RHRTIVVG------GDRDYPPYEFID---QNGKPA--GYNVELTRAIAEVMGMTVEFRLGA-------WSEMFSALKSGR 70 (234)
T ss_dssp SSSCEEEE------EETEETTTEEEC---TTSCEE--SHHHHHHHHHHHHHTCCEEEEEEC-------GGGHHHHHHTTS
T ss_pred CCCEEEEE------ecCCCCCeEEEC---CCCCEe--eeEHHHHHHHHHHcCCceEEEeCC-------HHHHHHHHhCCC
Confidence 34689999 645789999653 567654 999999999999999999998643 347899999999
Q ss_pred ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCC
Q psy936 132 VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 132 ~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
+|++ .++..+.+|.. .+.|+.|+.....++++++...
T Consensus 71 ~D~~-~~~~~~~~r~~-----------------------~~~~s~p~~~~~~~~~~~~~~~ 107 (234)
T 3h7m_A 71 VDVL-QGISWSEKRAR-----------------------QIDFTPPHTIVYHAIFARRDSP 107 (234)
T ss_dssp SSEE-EEEECCHHHHT-----------------------TEEEEEEEEEEEEEEEEESSSC
T ss_pred eeEE-EeccCCHhHHh-----------------------hcCCCccccccceEEEEECCCC
Confidence 9995 67788888888 8999999999999999998765
No 30
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=98.51 E-value=3.5e-07 Score=83.55 Aligned_cols=102 Identities=10% Similarity=0.117 Sum_probs=82.2
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHH----CC---CcEEEEeeCCCCCCCCchhhhh
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAK----YE---FSYEIILPSRKTLLDQDGSIMN 125 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~----ln---ft~~~~~~~~~~~G~~~~g~~~ 125 (344)
..+|+|+ +..+.+||.+.+ ++|+.. |+++|+++.++++ +| .+++++..+ ++.++.
T Consensus 16 ~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~~-------~~~~~~ 77 (287)
T 2vha_A 16 NGVIVVG------HRESSVPFSYYD---NQQKVV--GYSQDYSNAIVEAVKKKLNKPDLQVKLIPIT-------SQNRIP 77 (287)
T ss_dssp HTEEEEE------ECSEETTTEEEC---SSSCEE--SHHHHHHHHHHHHHHHHTTCTTCEEEEEECC-------TTTHHH
T ss_pred CCeEEEE------EcCCCCCceEEC---CCCCcc--cccHHHHHHHHHHHHHhcCCCCceEEEEECC-------HHHHHH
Confidence 4789999 644689998653 457654 9999999999986 56 888887643 236899
Q ss_pred hcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCCCC
Q psy936 126 ILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESAT 195 (344)
Q Consensus 126 ~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~~~ 195 (344)
.+.+|++|++++++..+.+|.. .++|+.|+.....++++++.....+
T Consensus 78 ~l~~g~~D~~~~~~~~t~~r~~-----------------------~~~~s~p~~~~~~~l~~~~~~~i~s 124 (287)
T 2vha_A 78 LLQNGTFDFECGSTTNNVERQK-----------------------QAAFSDTIFVVGTRLLTKKGGDIKD 124 (287)
T ss_dssp HHHTTSCSEECSSCBCCHHHHT-----------------------TCEEEEEEEEEEEEEEEETTSSCCS
T ss_pred HHHCCCeeEEeccccCCcchhh-----------------------cccccceeeecceEEEEECCCCCCC
Confidence 9999999999888888888887 8999999999999999998754433
No 31
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=98.49 E-value=3.1e-07 Score=83.41 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=84.7
Q ss_pred cCCCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccc
Q psy936 50 IIEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKT 129 (344)
Q Consensus 50 ~l~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~ 129 (344)
..+..+|+|+ +..+.+||.+. ++|+. .|+++|+++.+++++|.+++++..+ +..++..+.+
T Consensus 38 ~~~~~~l~v~------~~~~~~P~~~~----~~g~~--~G~~~dl~~~i~~~~g~~v~~~~~~-------~~~~~~~l~~ 98 (272)
T 2pvu_A 38 GATKKKVVVG------TDAAFAPFEYM----QKGKI--VGFDVDLLDAVMKAAGLDYELKNIG-------WDPLFASLQS 98 (272)
T ss_dssp CCCCCCEEEE------ECCCBTTTBEE----ETTEE--ESHHHHHHHHHHHHHTCCEEEEECC-------HHHHHHHHHH
T ss_pred cccCCeEEEE------ECCCCCCeEEe----cCCeE--EEEHHHHHHHHHHHhCCceEEEECC-------HHHHHHHHhC
Confidence 3445789999 64578999865 24654 5999999999999999999987743 3578999999
Q ss_pred ceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCCC
Q psy936 130 GEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESA 194 (344)
Q Consensus 130 g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~~ 194 (344)
|++|++++++..+.+|.. .+.|+.|+.....++++++.....
T Consensus 99 G~~D~~~~~~~~~~~r~~-----------------------~~~~s~p~~~~~~~l~~~~~~~i~ 140 (272)
T 2pvu_A 99 KEVDMGISGITITDERKQ-----------------------SYDFSDPYFEATQVILVKQGSPVK 140 (272)
T ss_dssp TSSSEECSSCBCCHHHHT-----------------------TEEECSCCEEECEEEEEETTCCCC
T ss_pred CCCCEEEeCCcCCHHHHh-----------------------cCccchhhhccceEEEEECCCCCC
Confidence 999999888888888877 899999999999999999876543
No 32
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=98.42 E-value=6e-07 Score=82.56 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=83.8
Q ss_pred CCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccce
Q psy936 52 EQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGE 131 (344)
Q Consensus 52 ~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~ 131 (344)
...+|+|+ +..+.+||.+.. ++|+.. |+++|+++.+++++|.+++++..+ +..++..+.+|+
T Consensus 55 ~~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~G~~v~~~~~~-------~~~~~~~l~~G~ 116 (283)
T 2yln_A 55 NKGTVTVG------TEGTYAPFTYHD---KDGKLT--GYDVEVTRAVAEKLGVKVEFKETQ-------WDSMMAGLKAGR 116 (283)
T ss_dssp HTCEEEEE------ECSEETTTEEEC---TTSCEE--SHHHHHHHHHHHHHTCEEEEEECC-------GGGHHHHHHHTS
T ss_pred cCCeEEEE------ECCCCCCeeEEC---CCCCEe--eehHHHHHHHHHHcCCceEEEECC-------HHHHHHHHHCCC
Confidence 34689999 644589998653 466654 999999999999999999988753 346899999999
Q ss_pred ecEEEeeccc-hhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 132 VDMVAAFVPV-LNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 132 ~Di~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
+|+++..+.. +.+|.. .++|+.|+......+++++....
T Consensus 117 ~D~~~~~~~~~t~~r~~-----------------------~~~~~~p~~~~~~~l~~~~~~~i 156 (283)
T 2yln_A 117 FDVVANQVGLTSPERQA-----------------------TFDKSEPYSWSGAVLVAHNDSNI 156 (283)
T ss_dssp CSEECSSCCCCSHHHHH-----------------------HEEECSCSEEECEEEEEETTCSC
T ss_pred cCEEEecCccCChhhhc-----------------------ceEeccCeeeecEEEEEECCCCC
Confidence 9999887777 888887 89999999999999999986543
No 33
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=98.41 E-value=6.6e-07 Score=82.17 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=83.1
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHC---CCcEEEEeeCCCCCCCCchhhhhhccc
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKY---EFSYEIILPSRKTLLDQDGSIMNILKT 129 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~l---nft~~~~~~~~~~~G~~~~g~~~~l~~ 129 (344)
..+|+|+ +..+.+||.+.. ++|+.. |+++|+++.+++++ |.+++++..+ +..++..+.+
T Consensus 43 ~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~~~~g~~~~~~~~~-------~~~~~~~l~~ 104 (292)
T 1xt8_A 43 NGVVRIG------VFGDKPPFGYVD---EKGNNQ--GYDIALAKRIAKELFGDENKVQFVLVE-------AANRVEFLKS 104 (292)
T ss_dssp HSSEEEE------ECSEETTTEEEC---TTSCEE--SHHHHHHHHHHHHHHSCTTCEEEEECC-------GGGHHHHHHT
T ss_pred CCeEEEE------ECCCCCCeeEEC---CCCCEe--eEhHHHHHHHHHHhccCCceEEEEEcC-------HHHHHHHHhC
Confidence 4679999 645679998653 567654 99999999999999 9999998753 2468999999
Q ss_pred ceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 130 GEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 130 g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
|++|++++++..+.+|.. .+.|+.|+.....++++++....
T Consensus 105 G~~D~~~~~~~~~~~r~~-----------------------~~~~s~p~~~~~~~~~~~~~~~i 145 (292)
T 1xt8_A 105 NKVDIILANFTQTPQRAE-----------------------QVDFCSPYMKVALGVAVPKDSNI 145 (292)
T ss_dssp TSCSEECSSCBCCHHHHT-----------------------TEEECCCCEEEEEEEEEETTCCC
T ss_pred CCeeEEeecCCCCcchhc-----------------------ceeeeccceecceEEEEECCCCC
Confidence 999999887878888877 89999999999999999987543
No 34
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.39 E-value=7.8e-07 Score=79.00 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=82.6
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHC---CCcEEEEeeCCCCCCCCchhhhhhccc
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKY---EFSYEIILPSRKTLLDQDGSIMNILKT 129 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~l---nft~~~~~~~~~~~G~~~~g~~~~l~~ 129 (344)
..+|+|+ +..+.+|+.+.. .++|+. .|+++|+++.+++++ |.+++++..+ +..++..+.+
T Consensus 37 ~~~l~vg------~~~~~~p~~~~~--~~~g~~--~G~~~~l~~~~~~~~~~pg~~v~~~~~~-------~~~~~~~l~~ 99 (259)
T 2v25_A 37 KGQLIVG------VKNDVPHYALLD--QATGEI--KGFEVDVAKLLAKSILGDDKKIKLVAVN-------AKTRGPLLDN 99 (259)
T ss_dssp HTCEEEE------ECSEETTTEEEE--TTTTEE--ESHHHHHHHHHHHHHHSCTTSEEEEECC-------TTTHHHHHHT
T ss_pred CCeEEEE------ECCCCCCeEEEE--CCCCeE--EEeeHHHHHHHHHHhcCCCcceEEEEcC-------HHHHHHHHhC
Confidence 3679999 645578998653 246754 499999999999999 9999988753 2368999999
Q ss_pred ceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCCC
Q psy936 130 GEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESA 194 (344)
Q Consensus 130 g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~~ 194 (344)
|++|++++++..+.+|.. .++|+.|+.....++++++.+...
T Consensus 100 g~~D~~~~~~~~~~~~~~-----------------------~~~~~~p~~~~~~~~~~~~~~~i~ 141 (259)
T 2v25_A 100 GSVDAVIATFTITPERKR-----------------------IYNFSEPYYQDAIGLLVLKEKKYK 141 (259)
T ss_dssp TSCSEECSSCBCCHHHHT-----------------------TEEECSCSEEEEEEEEEEGGGCCC
T ss_pred CCCCEEEecCccCHHHHh-----------------------cCcccccceeCceEEEEeCCCCCC
Confidence 999999887777888877 899999999999999999765433
No 35
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=98.38 E-value=5.3e-07 Score=80.70 Aligned_cols=100 Identities=12% Similarity=0.222 Sum_probs=82.5
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccccee
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEV 132 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~ 132 (344)
..+|+|+ +..+.+||.+....+.+|+ ..|+++|+++.+++++|.+++++..+ +..++..+.+|++
T Consensus 38 ~~~l~v~------~~~~~~P~~~~~~~~~~g~--~~G~~~dl~~~~~~~~g~~~~~~~~~-------~~~~~~~l~~g~~ 102 (269)
T 4i62_A 38 KGKLVVA------LNPDFAPFEYQKVVDGKNQ--IVGSDIELAKAIATELGVELELSPMS-------FDNVLASVQSGKA 102 (269)
T ss_dssp HTEEEEE------ECSCBTTTBEEEEETTEEE--EESHHHHHHHHHHHHHTCEEEEEECC-------HHHHHHHHHTTSC
T ss_pred CCeEEEE------ecCCCCCceeecccCCCCc--EeeecHHHHHHHHHHHCCceEEEEcC-------HHHHHHHHhCCCc
Confidence 4589999 6456799986321134454 45999999999999999999988742 3478999999999
Q ss_pred cEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCC
Q psy936 133 DMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRP 190 (344)
Q Consensus 133 Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~ 190 (344)
|++++++..+.+|.. .+.|+.|+......+++++.
T Consensus 103 D~~~~~~~~~~~r~~-----------------------~~~~s~p~~~~~~~~~~~~~ 137 (269)
T 4i62_A 103 DLAISGVSKTDERSK-----------------------VFDFSTPYYTAKNKLIVKKS 137 (269)
T ss_dssp SEECSSCBCCHHHHT-----------------------TEEECSCCEECCEEEEEEGG
T ss_pred cEEecCCcCCHhHhh-----------------------ceecccchhhcceEEEEECC
Confidence 999988888899888 89999999999999999886
No 36
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=98.38 E-value=8.4e-07 Score=79.34 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=80.6
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhccccee
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEV 132 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~ 132 (344)
..+|+|+ +..+.+|+.+.+ ++|+.. |+++|+++.+++++|.+++++..+ +..++..+.+|++
T Consensus 30 ~~~l~v~------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~~ 91 (268)
T 3qax_A 30 NRIWIVG------TNATYPPFEYVD---AQGEVV--GFDIDLAKAISEKLGKQLEVREFA-------FDALILNLKKHRI 91 (268)
T ss_dssp -CEEEEE------ECSCBTTTBEEC---TTSCEE--SHHHHHHHHHHHHHTCEEEEEECC-------GGGHHHHHHHTSS
T ss_pred CCeEEEE------ECCCCCCceEEC---CCCCEE--EEEHHHHHHHHHHhCCeEEEEecC-------HHHHHHHHhCCCc
Confidence 4689999 645679999653 567655 999999999999999999987742 3478999999999
Q ss_pred cEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeec--cceeEEEEeCCC
Q psy936 133 DMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELG--QSQYVVMMKRPH 191 (344)
Q Consensus 133 Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~--~~~~~~~v~~~~ 191 (344)
|++++++..+.+|.. .++| .|+. .....+++++.+
T Consensus 92 D~~~~~~~~~~~r~~-----------------------~~~~-~p~~~~~~~~~~~~~~~~ 128 (268)
T 3qax_A 92 DAILAGMSITPSRQK-----------------------EIAL-LPYYGDEVQELMVVSKRS 128 (268)
T ss_dssp SEECSCCBCCHHHHT-----------------------TSEE-EEEECCCBCEEEEEEETT
T ss_pred cEEeecCccCHhHhc-----------------------ceee-ecceecccceEEEEECCC
Confidence 999988888999888 8899 9999 888899998763
No 37
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=98.33 E-value=9.7e-07 Score=81.35 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=83.6
Q ss_pred CceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHC---CCcEEEEeeCCCCCCCCchhhhhhccc
Q psy936 53 QLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKY---EFSYEIILPSRKTLLDQDGSIMNILKT 129 (344)
Q Consensus 53 g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~l---nft~~~~~~~~~~~G~~~~g~~~~l~~ 129 (344)
..+|+|+ +..+.+||.+.. ++|+.. |+++|+++.+++++ |.+++++..+ +..++..+.+
T Consensus 54 ~~~l~vg------~~~~~~P~~~~~---~~g~~~--G~~~dl~~~i~~~~~~~g~~v~~~~~~-------~~~~~~~l~~ 115 (291)
T 2yjp_A 54 KGVIRIG------VFGDKPPFGYVD---ANGKNQ--GFDVEIAKDLAKDLLGSPDKVEFVLTE-------AANRVEYVRS 115 (291)
T ss_dssp HTCEEEE------ECSEETTTEEEC---TTSCEE--SHHHHHHHHHHHHHHSCGGGEEEEECC-------GGGHHHHHHT
T ss_pred CCeEEEE------EcCCCCCceEEC---CCCCEe--ehHHHHHHHHHHHhccCCceEEEEEcc-------HHHHHHHHhC
Confidence 3579999 545679998653 567655 99999999999999 9999998753 2368999999
Q ss_pred ceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCCC
Q psy936 130 GEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHESA 194 (344)
Q Consensus 130 g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~~ 194 (344)
|++|++++....+.+|.. .++|+.|+......+++++.....
T Consensus 116 G~~D~~~~~~~~~~~r~~-----------------------~~~~~~p~~~~~~~l~~~~~~~i~ 157 (291)
T 2yjp_A 116 GKVDLILANFTQTPERAE-----------------------AVDFADPYMKVALGVVSPKNKPIT 157 (291)
T ss_dssp TSCSEECSSCBCCHHHHT-----------------------TEEECCCCEEECEEEEEETTSCCC
T ss_pred CCeeEEEeCCCCChHHHc-----------------------cceeccCeeecceEEEEeCCCCCC
Confidence 999999888888888887 899999999999999999876433
No 38
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.51 E-value=0.0049 Score=50.18 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=52.5
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecC
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLS 296 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 296 (344)
..++.+++|+++.++...| ++..|.+..+|++...|+++++.+.+...|.+++.++..
T Consensus 59 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 59 LITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999888 778999999999999999999999999999998877654
No 39
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.49 E-value=0.0019 Score=50.97 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeec
Q psy936 217 LIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTL 295 (344)
Q Consensus 217 ~~~~vl~~i~r~~~~~~~~~~~~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 295 (344)
+.+.+++.+++..+ .+...++.+++|+++.++...| ++..|.+..+|++.+.|+++++.+.+...+.+++.++.
T Consensus 21 ~~a~~~~~~E~~~~-----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 21 EASKKAVEAERGAP-----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp HHHHHHHHHHTTST-----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred HHHHhhhhhccCCC-----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554321 2234478899999999999888 67899999999999999999999999999999988876
Q ss_pred CC
Q psy936 296 SQ 297 (344)
Q Consensus 296 ~~ 297 (344)
..
T Consensus 96 ~~ 97 (103)
T 2k1e_A 96 RE 97 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 40
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.37 E-value=0.0098 Score=50.57 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=54.1
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCCC
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQF 298 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~ 298 (344)
..++.+++|+++.++...| ++..|.+..+|++.+.+.++++.+.+...+.+++.++....
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999888 67899999999999999999999999999999998887654
No 41
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=96.10 E-value=0.021 Score=47.22 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=52.2
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecC
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLS 296 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 296 (344)
..++.+++|+++.++...| ++..|.+..+|++.+.|.++++.+.+...+.+++.+...
T Consensus 38 ~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 38 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred cCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999888 678999999999999999999999999999998887554
No 42
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.91 E-value=0.024 Score=47.04 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=52.9
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCC
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQ 297 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 297 (344)
..++.+++|+++.++...| ++..|.+..+|++.+.|+++++.+.+...+.+++.+....
T Consensus 41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 41 INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999888 6789999999999999999999999999999998886543
No 43
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=95.19 E-value=0.022 Score=44.42 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred cCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCC
Q psy936 240 YPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQ 297 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 297 (344)
+++.+++|+++.++...| ++..|.+..+|++...+.++++.+.+...+.+++.++.+.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 89 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 578999999999998888 5789999999999999999999999999999988777654
No 44
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=95.16 E-value=0.045 Score=43.86 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=50.2
Q ss_pred cCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecC
Q psy936 240 YPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLS 296 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 296 (344)
+++.+++|+++.++...| ++..|.+..+|++...|.+.++.+.+...+.+.+.++..
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999888 578999999999999999999999999999888877554
No 45
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=95.07 E-value=0.069 Score=40.11 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=47.3
Q ss_pred cCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeee
Q psy936 240 YPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFL 293 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~L 293 (344)
.++.+++|++..++...| ++..|.+..+|++...+.+.++.+.+...+.+++.+
T Consensus 27 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999888 678999999999999999999999988888776543
No 46
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=94.84 E-value=0.072 Score=44.47 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=49.9
Q ss_pred cCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeec
Q psy936 240 YPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTL 295 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 295 (344)
+++.+++|+++.++...| ++..|.+..+|++...|.++++.+.+...+.+++.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999988 67899999999999999999999999988888876543
No 47
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=93.37 E-value=0.21 Score=46.85 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=52.7
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCC
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQ 297 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 297 (344)
..++.+++|+++.++...| ++..|.+..+|++...+.+.++++.++..|.+++.++.+.
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4578999999999998887 5688999999999999999999999999999999888764
No 48
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=93.34 E-value=0.024 Score=51.36 Aligned_cols=74 Identities=9% Similarity=-0.001 Sum_probs=59.0
Q ss_pred EEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhh------hhHHHhhhhhhHHHH
Q psy936 86 EGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNI------KKNKMAALVKSEEEE 159 (344)
Q Consensus 86 ~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~------r~~~~~~~~~~~~~~ 159 (344)
++.|+.--|-+.+. |..+++..... .++.+..|.+|++|+++.++..+.+ |..
T Consensus 29 ~yeGlatgl~~~f~---gi~~~i~~mrg------~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~------------ 87 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIPFYYAHMRG------ADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCI------------ 87 (231)
T ss_dssp HHHHHHHHHHHTTT---TSCEEEEECSC------HHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEE------------
T ss_pred hhhHHHHHHHHHhc---CCcEEEEEccC------hHHHHHHHHcCCCCEEEEecccchhhhcccCeEE------------
Confidence 34588888887774 77777665421 2489999999999999999999988 777
Q ss_pred HHHHhhhccccEEEeceeeccceeEEEEeCCC
Q psy936 160 LKLQLQQEEAMKWKWGIELGQSQYVVMMKRPH 191 (344)
Q Consensus 160 ~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~ 191 (344)
.++|+.|++.+.-.+++++++
T Consensus 88 -----------~vdFg~~yYv~~h~li~~~~~ 108 (231)
T 2ozz_A 88 -----------ALELGPHTYVGEHQLICRKGE 108 (231)
T ss_dssp -----------EEECCTTSSSCCEEEEEETTC
T ss_pred -----------EEEcCCCccccCeEEEEeCCC
Confidence 999999999777778887775
No 49
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=92.76 E-value=0.28 Score=43.19 Aligned_cols=57 Identities=7% Similarity=0.150 Sum_probs=50.6
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeec
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTL 295 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 295 (344)
..++.+++|+++.++...| ++..|.+..+|++...+++.|+.+.+...|.+++.++.
T Consensus 163 ~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 163 IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999888 67899999999999999999999999999998877654
No 50
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=92.64 E-value=0.31 Score=46.13 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=53.6
Q ss_pred cCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCCCC
Q psy936 240 YPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFT 299 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 299 (344)
.++.+++|+++.++...| ++..|.+..+|++...+.+.++++.++-+|.+++.++.+...
T Consensus 77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 378999999999999888 668999999999999999999999999999999999887543
No 51
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=92.28 E-value=0.12 Score=49.21 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=53.5
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCCCC
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFT 299 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 299 (344)
..++.+++|+++.++...| ++..|.+..+|++...+.++++++.++-.|.+++.++.+...
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r 155 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999888888 568899999999999999999999999999999999887543
No 52
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=91.99 E-value=0.16 Score=51.17 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=49.6
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeec
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTL 295 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 295 (344)
-.++.+++|+++.++...| ++..|.+..+|++.+.++++++++.+...|.+.+.+..
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999998888 66889999999999999999999999999988876554
No 53
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=90.72 E-value=0.1 Score=44.45 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=53.3
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCC
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQ 297 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 297 (344)
..++.+++|+++.++...| ++..|.+..+|++.+.|+++++++.+...+.+++.++...
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999888 6789999999999999999999999999999999988653
No 54
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=89.48 E-value=0.34 Score=45.72 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecC
Q psy936 241 PISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLS 296 (344)
Q Consensus 241 ~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 296 (344)
++.+++|+++.++...| ++..|.+..+|++...++++++++.+...|.+++.+...
T Consensus 161 ~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 217 (355)
T 3beh_A 161 SIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE 217 (355)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998888 678999999999999999999999999999988777653
No 55
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=87.14 E-value=0.75 Score=42.60 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=44.9
Q ss_pred ceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceec
Q psy936 54 LRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVD 133 (344)
Q Consensus 54 ~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~D 133 (344)
.+|+|| +....+|+.+. ....++++.|++++|.+++++...+ +.+++..+.+|++|
T Consensus 4 ~~l~iG------~~p~~~p~~~~------------~~~~~l~~~l~k~lG~~ve~~~~~~------~~~~i~al~~G~vD 59 (310)
T 3n5l_A 4 PVINFG------IISTESSQNLK------------SIWEPFLKDMSQQTGYQVKAFFAPD------YAGIIQGMRFDKVD 59 (310)
T ss_dssp CEEEEE------ECCSSCHHHHH------------HHHHHHHHHHHHHHSSEEEEECCSS------HHHHHHHHHTTSCS
T ss_pred cEEEEE------EecCCCHHHHH------------HHHHHHHHHHHHHhCCCEEEEeCCC------HHHHHHHHHcCCCC
Confidence 578999 54455665532 1124899999999999999875432 24799999999999
Q ss_pred EEEee
Q psy936 134 MVAAF 138 (344)
Q Consensus 134 i~~~~ 138 (344)
+++.+
T Consensus 60 i~~~~ 64 (310)
T 3n5l_A 60 IAWYG 64 (310)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 99755
No 56
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=86.34 E-value=0.96 Score=45.42 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=42.5
Q ss_pred cCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccc
Q psy936 240 YPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTAN 288 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~ 288 (344)
+++.+++|+++.++...| ++..|.+..+|++...|.++++.+.+...+.
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998887 4678999999999999999998887776665
No 57
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=86.13 E-value=0.8 Score=42.45 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=52.4
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcc-------hhHHHHHHHHHHHHHHhhcccceeeeeecCCCCCCCCCHHH
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDS-------TRIMFASWWIFIMILTAFYTANLTAFLTLSQFTLPIHSVED 307 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s-------~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~I~Tled 307 (344)
.+++.+++|+++-++...| ++..|.+.. +|++...|+++++.+.+...+.+++.+...+....+..-+|
T Consensus 199 ~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 275 (280)
T 3ukm_A 199 DWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKD 275 (280)
T ss_dssp SCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC----
T ss_pred CCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3678999999999998887 567777764 59999999999999999999888887776655544444333
No 58
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=85.33 E-value=1.2 Score=41.63 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=46.4
Q ss_pred CCCceEEEEecCCCcccccCCCceeeeecCCCCceEEeeehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccc
Q psy936 51 IEQLRLPIEPTIPSFLFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTG 130 (344)
Q Consensus 51 l~g~~L~v~~~~P~~~~~~~~P~~~~~~~~~~g~~~~~G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g 130 (344)
-+..+|++| .....+|.... .....+++.|++++|.+++++...+ +.+++..|.+|
T Consensus 11 ~~~~~l~~G------v~p~~~~~~~~------------~~~~~l~~~L~k~lG~~ve~~~~~~------~~~~i~aL~~G 66 (321)
T 3p7i_A 11 EQEKALNFG------IISTESQQNLK------------PQWTPFLQDMEKKLGVKVNAFFAPD------YAGIIQGMRFN 66 (321)
T ss_dssp ---CCEEEE------ECCSSCHHHHH------------HHHHHHHHHHHHHHTSCEEEECCSS------HHHHHHHHHTT
T ss_pred hcCCcEEEE------EecCCCHHHHH------------HHHHHHHHHHHHHHCCCEEEEecCC------HHHHHHHHHcC
Confidence 456789999 53333444321 2234799999999999999876432 24799999999
Q ss_pred eecEEEee-ccchhh
Q psy936 131 EVDMVAAF-VPVLNI 144 (344)
Q Consensus 131 ~~Di~~~~-~~~~~~ 144 (344)
++|+++.+ ......
T Consensus 67 ~vDia~~~~~~~~~~ 81 (321)
T 3p7i_A 67 KVDIAWYGNLSAMEA 81 (321)
T ss_dssp SCSEEECCHHHHHHH
T ss_pred CCcEEEEChHHHHHH
Confidence 99999753 444433
No 59
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=80.21 E-value=3.6 Score=39.06 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=51.8
Q ss_pred CcCchhHHHHHHHHHHcCCC-CCCCC--CcchhHHHHHHHHHHHHHHhhcccceeeeeecCCCC
Q psy936 239 LYPISACTWFVYGALMKQGS-TLNPR--TDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFT 299 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg~-~~~p~--s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 299 (344)
..++..++|+++.++...|. +..|. ...+|++...-.+.++++.+.-+|.+.+-++.|...
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 34688999999999988874 46675 577999999999999999999999999999888654
No 60
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=76.28 E-value=2.7 Score=37.79 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=54.3
Q ss_pred eehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeec-cchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFV-PVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
|+.+.+-+-+.++.|.+++++..... ...+..+.+|++|+++++. .....|.+
T Consensus 19 ~~~va~~~g~~~~~Gl~v~~~~~~~~------~~~~~~l~~G~~D~~~~~~~~~~~~~~~-------------------- 72 (302)
T 3ix1_A 19 FLYVAIENGYFAEEGLDVDIVFPTNP------TDPIQLTASGAIPLALSYQPDVILARSK-------------------- 72 (302)
T ss_dssp HHHHHHHTTHHHHTTEEEEEECCSST------THHHHHHHHTSCSEEEECHHHHHHHHHT--------------------
T ss_pred HHHHHHHcChHHHcCCcEEEecCCCC------chHHHHHHCCCCCEEecCHHHHHHHHHC--------------------
Confidence 88888888888999999998754321 2688999999999998763 32333322
Q ss_pred cccEEEeceeeccceeEEEEeCCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
......++.++......+++++....
T Consensus 73 g~~~~~~~~~~~~~~~~l~~~~~s~i 98 (302)
T 3ix1_A 73 DLPVVSVASVVRSPLNHVMFLAEQDF 98 (302)
T ss_dssp TCCEEEEEEEECSCCEEEEEEGGGCC
T ss_pred CCCEEEEEEEeccCCEEEEEECCCCC
Confidence 01155666666667788888865433
No 61
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=74.96 E-value=5.6 Score=37.26 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=44.8
Q ss_pred cCchhHHHHHHHHHHcCC-CCCCCCCcchh------HHHHHHHHHHHHHHhhcccceeeeeec
Q psy936 240 YPISACTWFVYGALMKQG-STLNPRTDSTR------IMFASWWIFIMILTAFYTANLTAFLTL 295 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg-~~~~p~s~s~R------il~~~w~l~~lil~~~Yta~L~s~Lt~ 295 (344)
+++.+++|+++-++...| ++..|.+..+| ++...|+++++.+.++-.+.+...+..
T Consensus 223 ~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 223 WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999998887 46778877776 589999999998888877776665543
No 62
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=74.24 E-value=2.1 Score=40.24 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=50.6
Q ss_pred CcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeec
Q psy936 239 LYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTL 295 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 295 (344)
.+++.+++|+++.++...| ++..|.+..+|++.+.+.++++.+.....+.+...+..
T Consensus 113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 113 AWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999998888 56899999999999999999999999999888877654
No 63
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=73.63 E-value=0.79 Score=42.77 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=48.9
Q ss_pred cCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCCCC
Q psy936 240 YPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFT 299 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 299 (344)
+++.+++|+++.++...| ++..|.+..+|++.+.+.++++.+.+...+.+++.++.....
T Consensus 44 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (336)
T 1lnq_A 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104 (336)
T ss_dssp CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------
T ss_pred CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999888 567899999999999999999999999999998888876543
No 64
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=73.03 E-value=9.3 Score=36.27 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=51.9
Q ss_pred CcCchhHHHHHHHHHHcCCCC-CC--CCCcchhHHHHHHHHHHHHHHhhcccceeeeeecCCCC
Q psy936 239 LYPISACTWFVYGALMKQGST-LN--PRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLSQFT 299 (344)
Q Consensus 239 ~~~i~~~~~~~~~~ll~qg~~-~~--p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 299 (344)
..++..++|+++.++...|.. .. |.+..++++...-.+.++++.+.-+|.+.+-++.|...
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 346899999999999888753 43 45788999999999999999999999999999998655
No 65
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=72.94 E-value=6 Score=33.36 Aligned_cols=71 Identities=20% Similarity=0.391 Sum_probs=49.6
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-..++..+.+++ +.++++..... ..+.+.|.+|++|+++...... ..
T Consensus 21 ~~lp~~l~~f~~~~P~v~l~l~~~~~-------~~l~~~L~~g~iDl~i~~~~~~---~~-------------------- 70 (218)
T 2y7p_A 21 YFMPPLMEALAQRAPHIQISTLRPNA-------GNLKEDMESGAVDLALGLLPEL---QT-------------------- 70 (218)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCCT-------TTHHHHHHHTSSCEEEECCTTC---CT--------------------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCc-------ccHHHHHhCCCceEEEecCCCC---Cc--------------------
Confidence 44567788888877 77777765322 2688999999999998643221 12
Q ss_pred cccEEEeceeeccceeEEEEeCCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
.+.+ .++....+++++++.+..
T Consensus 71 ---~l~~-~~l~~~~~~~v~~~~hpl 92 (218)
T 2y7p_A 71 ---GFFQ-RRLFRHRYVCMFRKDHPS 92 (218)
T ss_dssp ---TEEE-EEEEEECEEEEEETTCSS
T ss_pred ---ceeE-EEeeeccEEEEEcCCCCC
Confidence 3333 478889999999987654
No 66
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=67.70 E-value=3.1 Score=38.47 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCcCchhHHHHHHHHHHcCC-CCCCCCCcchhHHHHHHHHHHHHHHhhcccceeeeeecC
Q psy936 238 ELYPISACTWFVYGALMKQG-STLNPRTDSTRIMFASWWIFIMILTAFYTANLTAFLTLS 296 (344)
Q Consensus 238 ~~~~i~~~~~~~~~~ll~qg-~~~~p~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 296 (344)
+.+++.+++|+++.++...| ++..|.+..+|++.+.+.++++.+...+-+.+...+...
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999998888 568999999999999999999999888888877655543
No 67
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=65.56 E-value=8.8 Score=31.61 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=48.5
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++..... ..+...+.+|++|+++....... .
T Consensus 21 ~~l~~~l~~f~~~~P~i~i~i~~~~~-------~~~~~~l~~g~~Di~i~~~~~~~---~-------------------- 70 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWPQVELDIVSGFQ-------ADPVGLLLQHRADLAIVSEAEKQ---N-------------------- 70 (222)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEECCCC-------SCTHHHHHTTSCSEEEESCCCCC---T--------------------
T ss_pred HHHHHHHHHHHHHCCCcEEEEecCCH-------HHHHHHHHcCCcCEEEecCCCCc---C--------------------
Confidence 44567888888887 66777655322 25889999999999988554321 1
Q ss_pred cccEEEeceeeccceeEEEEeCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+. ..++....+++++++.+.
T Consensus 71 ---~~~-~~~l~~~~~~~v~~~~~p 91 (222)
T 4ab5_A 71 ---GIS-FQPLFAYEMVGICAPDHP 91 (222)
T ss_dssp ---TEE-EEEEEEEEEEEEECTTSG
T ss_pred ---CeE-EEEeecCcEEEEecCCCh
Confidence 222 347888899999988764
No 68
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=65.54 E-value=10 Score=32.08 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=50.3
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-..++..+.+++ +.++++..... ..+.+.|.+|++|+++...... ..
T Consensus 32 ~~l~~~l~~f~~~~P~i~l~~~~~~~-------~~~~~~l~~g~~Dl~i~~~~~~---~~-------------------- 81 (241)
T 3oxn_A 32 TILPFALPRIYQEAPNVSFNFLPLQH-------DRLSDQLTYEGADLAICRPTGP---VE-------------------- 81 (241)
T ss_dssp HTHHHHHHHHHHHCTTCEEEEEECCG-------GGHHHHHHTSCCSEEEECCSSC---CT--------------------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCc-------ccHHHHHHcCCCCEEEecCCCC---Cc--------------------
Confidence 44567888888886 77888776332 2688999999999998855432 11
Q ss_pred cccEEEeceeeccceeEEEEeCCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
.+. ..++....+++++++.+..
T Consensus 82 ---~~~-~~~l~~~~~~~v~~~~hpl 103 (241)
T 3oxn_A 82 ---PLR-SEILGRVGVLCLLSKQHPL 103 (241)
T ss_dssp ---TEE-EEEEECCCEEEEEETTSGG
T ss_pred ---cce-eEEeecccEEEEEeCCCCc
Confidence 233 3478888999999877653
No 69
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=64.52 E-value=9.9 Score=33.99 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=53.5
Q ss_pred eehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhcc
Q psy936 89 GIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEE 168 (344)
Q Consensus 89 G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 168 (344)
|+--+|+..+.++++.++++..... +.++.++.+|.+|+.+..-....+... ..
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~gS-------g~ll~qi~~G~aDV~isa~~~~~~~l~------~~------------- 72 (236)
T 3lr1_A 19 GLLKVLLPPFEKKNNVKVDVIAVGT-------GQALKLGEAGDVDVVFVHARKLEDKFV------AD------------- 72 (236)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEECH-------HHHHHHHHTTSCSEEEECCHHHHHHHH------HT-------------
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcCh-------HHHHHHHhcCCCCEEeecCchhHHHHH------hc-------------
Confidence 6667889999988888888766432 368899999999999776543222111 00
Q ss_pred ccEEEeceeeccceeEEEEeCCCCC
Q psy936 169 AMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 169 ~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
....-..++....+++++|+.++.
T Consensus 73 -g~~~~~~~~~~n~lVlV~P~~~P~ 96 (236)
T 3lr1_A 73 -GFGVNRKDVMYNDFVIVGPKNDPA 96 (236)
T ss_dssp -TSEEEEEEEEECCEEEEECTTCTT
T ss_pred -CCCcceEEEEcCcEEEEEECCChh
Confidence 012224578889999999987764
No 70
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=63.71 E-value=8.6 Score=31.49 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=49.4
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++..... ..+.+++.+|++|+++....... .
T Consensus 17 ~~l~~~l~~~~~~~P~i~i~i~~~~~-------~~~~~~l~~g~~Dl~i~~~~~~~---~-------------------- 66 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMPLMLEENYT-------HTLTESLKRGDVDAIIVAEPFQE---P-------------------- 66 (219)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEECH-------HHHHHHHHHTSSSEEEEESSCCC---T--------------------
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCCc-------HHHHHHHHcCCCCEEEEcCCCCC---C--------------------
Confidence 34567788888877 78888766432 26888999999999988764322 1
Q ss_pred cccEEEeceeeccceeEEEEeCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+. ..++....+++++++.+.
T Consensus 67 ---~~~-~~~l~~~~~~~v~~~~~p 87 (219)
T 3jv9_A 67 ---GIV-TEPLYDEPFFVIVPKGHS 87 (219)
T ss_dssp ---TEE-EEEEEEEEEEEEEETTCG
T ss_pred ---Cee-EEEeeeceEEEEEeCCCC
Confidence 222 347788889999987754
No 71
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=59.27 E-value=11 Score=31.33 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=47.8
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++.... ...+.+.+.+|++|+++....... .
T Consensus 18 ~~l~~~l~~f~~~~P~v~l~l~~~~-------~~~~~~~l~~g~~Dl~i~~~~~~~---~-------------------- 67 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFPKLEMYLHEAQ-------THQLLAQLDSGKLDAVILALVKES---E-------------------- 67 (219)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECC-------HHHHHHHHHHTSCSEEEEECCGGG---T--------------------
T ss_pred hhhhHHHHHHHHHCCCeEEEEEECC-------hHHHHHHHHcCCeeEEEecCCCCC---C--------------------
Confidence 45667888888887 5666665422 236888999999999987543211 1
Q ss_pred cccEEEeceeeccceeEEEEeCCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
.+.+ .++....+++++++.+..
T Consensus 68 ---~l~~-~~l~~~~~~~v~~~~hpl 89 (219)
T 1i6a_A 68 ---AFIE-VPLFDEPMLLAIYEDHPW 89 (219)
T ss_dssp ---TSEE-EEEEEEEEEEEEETTSGG
T ss_pred ---Ccce-eeeecccEEEEEcCCCcc
Confidence 2222 478888899999877653
No 72
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=58.79 E-value=14 Score=33.00 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=52.6
Q ss_pred eehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhcc
Q psy936 89 GIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEE 168 (344)
Q Consensus 89 G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 168 (344)
|+.-+|+..+.++.+.++++..... +.++.++.+|.+|+.+..-........ ..
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~gS-------g~ll~qi~~G~aDv~isa~~~~~~~l~------~~------------- 72 (237)
T 3muq_A 19 GLLDYLLPQFEKDTGYKVDVIAAGT-------GKALKMGENGDVDLVMTHAPKAEGTFV------EK------------- 72 (237)
T ss_dssp THHHHHHHHHHHHHCCEEEEEEECH-------HHHHHHHHTTSSSEEEECCHHHHHHHH------HT-------------
T ss_pred hHHHHHHHHHHHHhCceEEEEEcCh-------HHHHHHHhcCCCCEEEecCchhHHHHH------hc-------------
Confidence 5667889999988898888765432 357889999999999775543222111 00
Q ss_pred ccEEEeceeeccceeEEEEeCCCCC
Q psy936 169 AMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 169 ~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
....-..++....+++++|+.++.
T Consensus 73 -g~~~~~~~~a~N~lVlV~P~~~P~ 96 (237)
T 3muq_A 73 -GYGVLPRKLMYNDFVIVGPKADPA 96 (237)
T ss_dssp -TSEEEEEEEEEEEEEEEECTTCTT
T ss_pred -CCccccEEEEeCCEEEEEeCCChh
Confidence 012224578888999999987654
No 73
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=58.02 E-value=12 Score=34.34 Aligned_cols=77 Identities=8% Similarity=-0.063 Sum_probs=44.9
Q ss_pred HHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccch-hhhhHHHhhhhhhHHHHHHHHhhhccccEE
Q psy936 94 ILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVL-NIKKNKMAALVKSEEEELKLQLQQEEAMKW 172 (344)
Q Consensus 94 ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v 172 (344)
+.+.+++. |.+++++..... | ....++..+.+|++|+++.+.... ..+.+ .....
T Consensus 35 l~~~~~~~-G~~v~~~~~~~~--g-~~~~~~~al~~G~~D~~~~~~~~~~~~~~~--------------------g~~~~ 90 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAMA--S-VGPVINEGFASGKIDFGIYGDLPPIILNAS--------------------KPTVQ 90 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECTT--C-HHHHHHHHHHTTCCCEEEEESHHHHHHHHH--------------------SCCEE
T ss_pred HHHHHHhc-CCeEEEEecccC--C-CcHHHHHHHHcCCCCEEecCcHHHHHHHhC--------------------CCCEE
Confidence 45566665 888887443211 0 012477899999999998655432 11111 01145
Q ss_pred EeceeeccceeEEEEeCCCCCC
Q psy936 173 KWGIELGQSQYVVMMKRPHESA 194 (344)
Q Consensus 173 ~fs~p~~~~~~~~~v~~~~~~~ 194 (344)
.++.++......+++++.....
T Consensus 91 ~v~~~~~~~~~~lvv~~~s~i~ 112 (348)
T 3uif_A 91 LVAPWGTTSNSYLVVPKNSTAK 112 (348)
T ss_dssp EEEECCCCCCCEEEEETTCCCC
T ss_pred EEEeccCCCceEEEEECCCCCC
Confidence 5555666677788888754433
No 74
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=56.47 E-value=13 Score=33.42 Aligned_cols=68 Identities=7% Similarity=0.002 Sum_probs=43.3
Q ss_pred HHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEeceee
Q psy936 99 SAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWGIEL 178 (344)
Q Consensus 99 a~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs~p~ 178 (344)
.++.|.+++++.... +..++..+.+|++|+++.+......... .......+...+
T Consensus 59 ~~~~g~~v~~~~~~~------~~~~~~~l~~G~~D~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 113 (346)
T 3qsl_A 59 FKDEGLDVSIADFAG------GSKALQAVVGGSADVVSGAFEHTLSLQA-------------------KGQFYRAFALQG 113 (346)
T ss_dssp HHHTTCEEEEEECSS------HHHHHHHHHTTSCSEEEEETHHHHHHHH-------------------TTCCEEEEEESB
T ss_pred hHhhCCeEEEEecCC------hHHHHHHHHCCCCCEEccchHHHHHHHh-------------------CCCCeEEEEecc
Confidence 467799988875322 2368899999999999877654321111 001156666655
Q ss_pred ccceeEEEEeCCC
Q psy936 179 GQSQYVVMMKRPH 191 (344)
Q Consensus 179 ~~~~~~~~v~~~~ 191 (344)
...+..+++++..
T Consensus 114 ~~~~~~~~v~~~~ 126 (346)
T 3qsl_A 114 RAPMIGVGVSKKN 126 (346)
T ss_dssp SSCCEEEEEETTT
T ss_pred cCCCcEEEEecCc
Confidence 5567788888754
No 75
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=55.59 E-value=15 Score=30.89 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=48.4
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-..++..+.+++ +.++++.... ...+.+++.+|++|+++...... ..
T Consensus 43 ~~l~~~l~~f~~~~P~v~l~~~~~~-------~~~~~~~l~~g~~Dl~i~~~~~~---~~-------------------- 92 (238)
T 2hxr_A 43 YFIGPLMADFYARYPSITLQLQEMS-------QEKIEDMLCRDELDVGIAFAPVH---SP-------------------- 92 (238)
T ss_dssp TTHHHHHHHHHHHCTTSCEEEEECC-------HHHHHHHHHTTSCSEEEEESSCC---CT--------------------
T ss_pred HHHHHHHHHHHHhCCCcEEEEEECC-------HHHHHHHHHcCCCcEEEEcCCCC---cc--------------------
Confidence 44567888888887 6777776532 12678899999999998754321 11
Q ss_pred cccEEEeceeeccceeEEEEeCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+.+ .++....+++++++.+.
T Consensus 93 ---~l~~-~~l~~~~~~~v~~~~hp 113 (238)
T 2hxr_A 93 ---ELEA-IPLLTESLALVVAQHHP 113 (238)
T ss_dssp ---TEEE-EEEEEEEEEEEEETTSG
T ss_pred ---ccee-eeeccCcEEEEEcCCCc
Confidence 2332 47888889999987664
No 76
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=54.83 E-value=10 Score=31.44 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=48.7
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++.... ...+.++|.+|++|+++....... .
T Consensus 24 ~~l~~~l~~~~~~~P~v~i~~~~~~-------~~~~~~~l~~g~~Dl~i~~~~~~~---~-------------------- 73 (232)
T 3ho7_A 24 YLLPRVFPIWKKELAGLEIHVSEMQ-------TSRCLASLLSGEIDMAIIASKAET---E-------------------- 73 (232)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEECC-------HHHHHHHHHHTSCSEEEESSCCCC---T--------------------
T ss_pred hhhHHHHHHHHHHCCCcEEEEEeCC-------HHHHHHHHHcCCCCEEEEcCCCCC---C--------------------
Confidence 34567788888877 6666665422 136889999999999987765332 1
Q ss_pred cccEEEeceeeccceeEEEEeCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+. ..++....+++++++.+.
T Consensus 74 ---~l~-~~~l~~~~~~~v~~~~hp 94 (232)
T 3ho7_A 74 ---GLE-DDLLYYEEFLGYVSRCEP 94 (232)
T ss_dssp ---TEE-EEEEEEEEEEEEECTTSG
T ss_pred ---CeE-EEEecccCEEEEEcCCCc
Confidence 222 347888899999987754
No 77
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=53.53 E-value=15 Score=31.75 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhh-HHHhhhhhhHHHHHHHHhhhcc
Q psy936 91 AFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKK-NKMAALVKSEEEELKLQLQQEE 168 (344)
Q Consensus 91 ~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~ 168 (344)
-.+++..+.+++ +.++++.... ...+...|.+|++|+++.......... .
T Consensus 42 l~~~l~~f~~~~P~i~v~i~~~~-------~~~~~~~l~~g~~Di~i~~~~~~~~~~~~--------------------- 93 (290)
T 1twy_A 42 MDVLAEKYNQQHPETYVAVQGVG-------STAGISLLKKGVADIAMTSRYLTESEAQN--------------------- 93 (290)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESC-------HHHHHHHHHTTSCSEEEESSCCCTTTCCT---------------------
T ss_pred HHHHHHHHHhhCCCceEEEEecC-------cHHHHHHHhcCCCcEEEecCCCchhhhhc---------------------
Confidence 346777788877 7888876522 136788999999999987654322110 1
Q ss_pred ccEEEeceeeccceeEEEEeCCCC
Q psy936 169 AMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 169 ~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+. ..++....+++++++.+.
T Consensus 94 --~~~-~~~l~~~~~~~v~~~~~p 114 (290)
T 1twy_A 94 --TLH-TFTLAFDGLAIVVNQANP 114 (290)
T ss_dssp --TCE-EEEEEEEEEEEEECTTCC
T ss_pred --Cce-EEEEEeeeEEEEECCCCC
Confidence 122 247788888999987654
No 78
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=52.16 E-value=14 Score=30.30 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=46.8
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++.... ...+.+++.+|++|+++....... .
T Consensus 18 ~~l~~~l~~f~~~~P~i~i~l~~~~-------~~~l~~~l~~g~~Dl~i~~~~~~~---~-------------------- 67 (209)
T 2ql3_A 18 TILPSMLYAFTAEYPRASVEFREDT-------QNRLRTQLEGGELDVAIVYDLDLS---P-------------------- 67 (209)
T ss_dssp TTHHHHHHHHHHHCTTEEEEEEECC-------HHHHHHHHHTTSCSEEEEESSSCC---T--------------------
T ss_pred hhHHHHHHHHHHHCCCceEEEEECc-------HHHHHHHHHcCCccEEEEecCCCC---C--------------------
Confidence 34568888888887 6677765532 126788999999999986543211 1
Q ss_pred cccEEEeceeeccceeEEEEeCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+. ..++....+++++++.+.
T Consensus 68 ---~l~-~~~l~~~~~~~v~~~~hp 88 (209)
T 2ql3_A 68 ---EWQ-TVPLMTREPMVVLGAEHP 88 (209)
T ss_dssp ---TEE-EEEEEEECCEEEEETTCG
T ss_pred ---Cce-EEEeecCceEEEEeCCCc
Confidence 222 246778888888887653
No 79
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=49.69 E-value=26 Score=31.14 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=44.6
Q ss_pred HHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccEEEec
Q psy936 97 TLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMKWKWG 175 (344)
Q Consensus 97 ~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~fs 175 (344)
.+++++ |.+++++..+. | ..++..+.+|++|+++.+.... .+.. +....-.+.++
T Consensus 24 ~~~~~~~g~~v~~~~~~~---~---~~~~~~l~~G~~D~~~~~~~~~-~~~~-----------------~~g~~~~~~~~ 79 (308)
T 2x26_A 24 LLEKRYPESKISWVEFPA---G---PQMLEALNVGSIDLGSTGDIPP-IFAQ-----------------AAGADLVYVGV 79 (308)
T ss_dssp HHHHHCTTSEEEEEECSS---H---HHHHHHHHHTSCSEEEECSHHH-HHHH-----------------HTTCCEEEEEE
T ss_pred hHhHhcCCCceEEEECCC---c---HHHHHHHHCCCCCEEcccCcHH-HHHH-----------------hcCCCeEEEEE
Confidence 366776 88888876432 1 2689999999999998665422 1211 00000134555
Q ss_pred eeeccceeEEEEeCCCCC
Q psy936 176 IELGQSQYVVMMKRPHES 193 (344)
Q Consensus 176 ~p~~~~~~~~~v~~~~~~ 193 (344)
.++.....++++++.+..
T Consensus 80 ~~~~~~~~~lv~~~~~~i 97 (308)
T 2x26_A 80 EPPKPKAEVILVAENSPI 97 (308)
T ss_dssp ECCCGGGEEEEEETTCSC
T ss_pred ecCCCCceEEEEeCCCCC
Confidence 566666788888876543
No 80
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=47.60 E-value=19 Score=29.82 Aligned_cols=77 Identities=9% Similarity=0.008 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccce-ecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccc
Q psy936 91 AFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGE-VDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEA 169 (344)
Q Consensus 91 ~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~-~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 169 (344)
.-+++..+.++-|.++++.... .+.+...+.+|+ +|+++..-....++.. ..
T Consensus 14 l~~~~~~F~~~p~i~v~~~~~~-------s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~------------------~~-- 66 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAVVISSGS-------SGPVYAQIVNGAPYNVFFSADEKSPEKLD------------------NQ-- 66 (231)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEC-------HHHHHHHHHTTCCCSEEECSSSHHHHHHH------------------HT--
T ss_pred HHHHHHHHHhccCCeEEEEECC-------cHHHHHHHHcCCCCCEEEeCChhHHHHHH------------------hc--
Confidence 3467777777778888875532 236788888998 9998764322222211 00
Q ss_pred cEEE--eceeeccceeEEEEeCCCCCC
Q psy936 170 MKWK--WGIELGQSQYVVMMKRPHESA 194 (344)
Q Consensus 170 ~~v~--fs~p~~~~~~~~~v~~~~~~~ 194 (344)
..+. -..++..+.+++++++.+..+
T Consensus 67 ~~~~~~~~~~~~~~~~vlv~~~~~~~~ 93 (231)
T 1atg_A 67 GFALPGSRFTYAIGKLVLWSAKPGLVD 93 (231)
T ss_dssp TCBCTTCCEEEEECCEEEEESSTTTSC
T ss_pred CCCcCCceeEeeeeeEEEEEcCCCCCC
Confidence 0111 135788888999998766543
No 81
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=47.27 E-value=25 Score=32.33 Aligned_cols=91 Identities=9% Similarity=0.026 Sum_probs=51.4
Q ss_pred eehHHHHHHHHHH----CCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHh
Q psy936 89 GIAFEILNTLSAK----YEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQL 164 (344)
Q Consensus 89 G~~~~ll~~la~~----lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 164 (344)
.+...|-+.+++. .+.++++..... ..+.++.+.+|++|+++............. .+.
T Consensus 47 ~~~~~la~~l~~~~~~~~g~~v~v~~~~g------~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~------------~~f 108 (327)
T 4ddd_A 47 PIGGSICRFIASDYGKDNKIICSISSTTG------SVYNLNSIRYSNMDISIVQSDLEYYAYNGL------------GFY 108 (327)
T ss_dssp HHHHHHHHHHHHHHGGGTSEEEEEECCCC------HHHHHHHHHTTSCSEEEEEHHHHHHHHHTC------------GGG
T ss_pred HHHHHHHHHHHhccCCCCCeEEEEEecCc------HHHHHHHHHcCCCcEEEECcHHHHHHHhCc------------Ccc
Confidence 4445667777776 677776654221 126778899999999987665332111100 000
Q ss_pred hhc-cccEEEeceeeccceeEEEEeCCCCCCCcc
Q psy936 165 QQE-EAMKWKWGIELGQSQYVVMMKRPHESATGS 197 (344)
Q Consensus 165 ~~~-~~~~v~fs~p~~~~~~~~~v~~~~~~~~~~ 197 (344)
... +...+.+-.+++.....+++++.....+..
T Consensus 109 ~~~~~~~d~~~v~~~~~~~~~lvv~~ds~i~sl~ 142 (327)
T 4ddd_A 109 EKMLPMDNLRMLASLHKEYLTIVVKKSSNISVID 142 (327)
T ss_dssp TTSCCCTTEEEEEEEEEEEEEEEEETTSSCCSGG
T ss_pred cccCCCcchhehhccCCccEEEEEECCCCCCCHH
Confidence 000 011455555777788889998765554443
No 82
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=45.45 E-value=4.1 Score=23.94 Aligned_cols=20 Identities=30% Similarity=0.883 Sum_probs=16.0
Q ss_pred CCcCchhHHHHHHHHHHcCC
Q psy936 238 ELYPISACTWFVYGALMKQG 257 (344)
Q Consensus 238 ~~~~i~~~~~~~~~~ll~qg 257 (344)
..+.+..++|++++++++.|
T Consensus 5 ~~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 5 DALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cceehhhhHHHhhHhheecc
Confidence 35678899999999998754
No 83
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=45.00 E-value=31 Score=30.33 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=47.5
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEee---ccchhhhhHHHhhhhhhHHHHHHHHh
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAF---VPVLNIKKNKMAALVKSEEEELKLQL 164 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~ 164 (344)
.+-.+++..+.+++ +.++++..... ..+.+.+.+|++|+++.. ..... .
T Consensus 114 ~~l~~~l~~f~~~~P~i~i~l~~~~~-------~~~~~~l~~g~~Dl~i~~~~~~~~~~---~----------------- 166 (310)
T 2esn_A 114 ALLPPLMNRLQHSAPGVRLRLVNAER-------KLSVEALASGRIDFALGYDEEHERLP---E----------------- 166 (310)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEECCSS-------SCCHHHHHHTSSSEEEECCSTTCCCC---T-----------------
T ss_pred HHHHHHHHHHHHHCCCeEEEEEeCCc-------ccHHHHHHcCCCCEEEecCcccccCC---c-----------------
Confidence 44567888888877 66777665322 147788999999999876 33211 1
Q ss_pred hhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 165 QQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 165 ~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
.+. ..++....+++++++.+..
T Consensus 167 ------~l~-~~~l~~~~~~~v~~~~~pl 188 (310)
T 2esn_A 167 ------GIQ-AHDWFADRYVVVARRDHPR 188 (310)
T ss_dssp ------TEE-EEEEEEECEEEEEESSCTT
T ss_pred ------Ccc-eeeeeccceEEEEeCCCCC
Confidence 222 2477888889999876543
No 84
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=44.55 E-value=47 Score=29.13 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=49.6
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-..++..+.+++ +.++++..... ..+...+.+|++|+++........ ..
T Consensus 105 ~~l~~~l~~f~~~~P~i~i~l~~~~~-------~~~~~~l~~g~~Dlai~~~~~~~~-~~-------------------- 156 (305)
T 3fxq_A 105 AALPLALASFAREFPDVTVNVRDGMY-------PAVSPQLRDGTLDFALTAAHKHDI-DT-------------------- 156 (305)
T ss_dssp THHHHHHHHHHHHCTTCEEEEEECCT-------TTTHHHHHHTSSSEEEEECCGGGS-CT--------------------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCH-------HHHHHHHHcCCCCEEEecCCCCCC-cc--------------------
Confidence 44567888888877 77888766322 257889999999999876543210 11
Q ss_pred cccEEEeceeeccceeEEEEeCCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
.+. ..++....+++++++.++.
T Consensus 157 ---~l~-~~~L~~~~~~~v~~~~hpl 178 (305)
T 3fxq_A 157 ---DLE-AQPLYVSDVVIVGQRQHPM 178 (305)
T ss_dssp ---TEE-EEEEEECCEEEEEETTCTT
T ss_pred ---Cee-EEEeecCcEEEEEcCCCCC
Confidence 222 3478888899999877653
No 85
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=42.12 E-value=40 Score=29.92 Aligned_cols=70 Identities=20% Similarity=0.423 Sum_probs=46.1
Q ss_pred ehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhcc
Q psy936 90 IAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEE 168 (344)
Q Consensus 90 ~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 168 (344)
+-..++..+.+++ +.++++..... ..+..++.+|++|+++...... ..
T Consensus 119 ~l~~~l~~f~~~~P~v~l~l~~~~~-------~~~~~~l~~g~~Dl~i~~~~~~---~~--------------------- 167 (315)
T 1uth_A 119 FMPPLMEALAQRAPHIQISTLRPNA-------GNLKEDMESGAVDLALGLLPEL---QT--------------------- 167 (315)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECTTS-------SCHHHHHHHTSCCEEEECCTTC---CT---------------------
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCc-------ccHHHHHHCCCCCEEEecCCCC---CC---------------------
Confidence 3456777777776 67777655321 2578899999999998754321 11
Q ss_pred ccEEEeceeeccceeEEEEeCCCCC
Q psy936 169 AMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 169 ~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
.+. ..++....+++++++.+..
T Consensus 168 --~l~-~~~l~~~~~~~v~~~~hpl 189 (315)
T 1uth_A 168 --GFF-QRRLFRHRYVCMFRKDHPS 189 (315)
T ss_dssp --TEE-EEEEEEECEEEEEETTCSS
T ss_pred --Cce-EEEeeccceEEEEeCCCCC
Confidence 222 2477788888888876543
No 86
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=42.06 E-value=20 Score=32.23 Aligned_cols=59 Identities=3% Similarity=0.129 Sum_probs=40.7
Q ss_pred cCchhHHHHHHHHHHcCCCC--C-CCCCc----chhHHHHHHHHHHHHHHhhcccceeeeeecCCC
Q psy936 240 YPISACTWFVYGALMKQGST--L-NPRTD----STRIMFASWWIFIMILTAFYTANLTAFLTLSQF 298 (344)
Q Consensus 240 ~~i~~~~~~~~~~ll~qg~~--~-~p~s~----s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~ 298 (344)
-++.+++|..+.++...|-. . .|... +.+++....++.++++.+.++|.+.+.+.....
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999998877633 2 24333 346666777778999999999999988876543
No 87
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=40.61 E-value=27 Score=30.94 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=47.7
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++.... ...+..++.+|++|+++....... .
T Consensus 103 ~~l~~~l~~f~~~~P~v~i~l~~~~-------~~~~~~~l~~g~~Dlai~~~~~~~---~-------------------- 152 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHPNLRIELYEMG-------TKAQTEALKEGRIDAGFGRLKISD---P-------------------- 152 (312)
T ss_dssp TTHHHHHHHHHHTCTTCEEEEEECC-------HHHHHHHHHTTSCSEEEESSCCCC---T--------------------
T ss_pred hhHHHHHHHHHHHCCCcEEEEEeCC-------HHHHHHHHHcCCCCEEEEeCCCCC---C--------------------
Confidence 44568888888877 6777776532 126788999999999987543321 1
Q ss_pred cccEEEeceeeccceeEEEEeCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+. ..++....+++++++.+.
T Consensus 153 ---~l~-~~~L~~~~~~~v~~~~hp 173 (312)
T 2h9b_A 153 ---AIK-HSLLRNERLMVAVHASHP 173 (312)
T ss_dssp ---TEE-EEEEEEEEEEEEEETTSG
T ss_pred ---Cce-EEEeecceEEEEEcCCCc
Confidence 222 247788888899887653
No 88
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=39.25 E-value=21 Score=32.11 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=48.4
Q ss_pred eehHHHHHHHHHH---C---CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHH
Q psy936 89 GIAFEILNTLSAK---Y---EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKL 162 (344)
Q Consensus 89 G~~~~ll~~la~~---l---nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 162 (344)
.+..+++..+.++ + +.++++.... .+.++..|.+|++|+++..-....+...
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~v~l~~~~-------s~~l~~~l~~G~~Dl~i~~~~~~~~~l~--------------- 90 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFKVAWYKSD-------TTVTINYLKDGIVDVGITYSPVAERISI--------------- 90 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CEEEEEECC-------HHHHHHHHHTTSCSEEEESCHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhhhcccCCCCeEEEEEeCC-------HHHHHHHHHcCCCcEEEEcCchhhhHHH---------------
Confidence 3456788888888 7 7888876632 2378899999999999764322111100
Q ss_pred HhhhccccEEEe-ce-eeccceeEEEEeCCCC
Q psy936 163 QLQQEEAMKWKW-GI-ELGQSQYVVMMKRPHE 192 (344)
Q Consensus 163 ~~~~~~~~~v~f-s~-p~~~~~~~~~v~~~~~ 192 (344)
.. .+.+ .. ++....+++++++.+.
T Consensus 91 ---~~---~~~~~~~~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 91 ---KH---GISESPSYYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp ---HT---TSBCSSCEEEEEEEEEEEECTTCT
T ss_pred ---hC---CcccceeeeEEeccEEEEecCCCh
Confidence 00 1112 24 7888889999987665
No 89
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=38.83 E-value=34 Score=28.65 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=48.9
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++.... ...+...|.+|++|+++..... .
T Consensus 40 ~~l~~~l~~f~~~~P~i~l~i~~~~-------~~~~~~~L~~g~~Dl~i~~~~~-----~-------------------- 87 (238)
T 3onm_A 40 TLLPFLLNRVATLYPRLAIDVRVKR-------SPFIADMLSSGEVDLAITTAKV-----D-------------------- 87 (238)
T ss_dssp THHHHHHHHHHHHCTTCCEEEEECC-------HHHHHHHHHHTSCSEEEECSCC--------------------------
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECC-------HHHHHHHHHCCCccEEEEecCC-----C--------------------
Confidence 34567888888877 7788876532 2368899999999999876542 1
Q ss_pred cccEEEeceeeccceeEEEEeCCCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHESA 194 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~~~ 194 (344)
.+ -..++....+++++++.+...
T Consensus 88 ---~~-~~~~l~~~~~~~v~~~~~~l~ 110 (238)
T 3onm_A 88 ---SH-PHVILRTSPTLWYCSVDYQFQ 110 (238)
T ss_dssp ---CC-CEEEEEEECEEEEEETTCCCC
T ss_pred ---Cc-ceEEeecCCEEEEEcCCCCcc
Confidence 11 134778888999998876544
No 90
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=38.35 E-value=28 Score=29.02 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=46.9
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++.... ...+.+.+.+|++|+++....... ..
T Consensus 27 ~~l~~~l~~f~~~~P~v~l~l~~~~-------~~~~~~~l~~g~~Dl~i~~~~~~~--~~-------------------- 77 (228)
T 2fyi_A 27 YSLPEVIKAFRELFPEVRLELIQGT-------PQEIATLLQNGEADIGIASERLSN--DP-------------------- 77 (228)
T ss_dssp HTHHHHHHHHHHHCTTEEEEEEECC-------HHHHHHHHHHTSCSEEEESSSSTT--CT--------------------
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCC-------HHHHHHHHHcCCccEEEEecccCC--CC--------------------
Confidence 44568888888887 5666665422 126888999999999986532111 11
Q ss_pred cccEEEeceeeccceeEEEEeCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+.+ .++....+++++++.+.
T Consensus 78 ---~l~~-~~l~~~~~~~v~~~~hp 98 (228)
T 2fyi_A 78 ---QLVA-FPWFRWHHSLLVPHDHP 98 (228)
T ss_dssp ---TEEE-EEEEEECEEEEEETTCG
T ss_pred ---CceE-EEeeecceEEEecCCCC
Confidence 2222 47788888999987664
No 91
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=35.37 E-value=24 Score=29.54 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=31.2
Q ss_pred eeeecCCCCCCCCCHHHHhCCCCcEEEEcCchhhHhhhh
Q psy936 291 AFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKL 329 (344)
Q Consensus 291 s~Lt~~~~~~~I~TledL~~s~~~~g~~~~~~~e~~l~~ 329 (344)
.+++......+|++++||.+.+.++|+..|+..+.+++.
T Consensus 104 ~~~~~~~~~~~i~~~~dL~~~g~~v~~~~g~~~~~~l~~ 142 (239)
T 3kbr_A 104 TPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARA 142 (239)
T ss_dssp EEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHHHHHHHH
T ss_pred EEEEECCcccccCCHHHhcCCCcEEEEcCCCcHHHHHHH
Confidence 344444334579999999988899999999999998877
No 92
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=34.97 E-value=35 Score=30.50 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=47.6
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-..++..+.+++ +.++++.... ...+..++.+|++|+++....... .
T Consensus 103 ~~l~~~l~~f~~~~P~v~l~l~~~~-------~~~~~~~l~~g~~Dlai~~~~~~~---~-------------------- 152 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIHIELIECG-------TKDQINALKQGKIDLGFGRLKITD---P-------------------- 152 (313)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEEECC-------HHHHHHHHHHTSCSEEEESSCCCC---T--------------------
T ss_pred hHHHHHHHHHHHHCCCeEEEEEeCC-------hHHHHHHHHcCCCCEEEEeCCCCC---C--------------------
Confidence 44568888888887 7788776532 126788999999999987543211 1
Q ss_pred cccEEEeceeeccceeEEEEeCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPH 191 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~ 191 (344)
.+. ..++....+++++++.+
T Consensus 153 ---~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 153 ---AIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp ---TEE-EEEEEEEEEEEEEETTS
T ss_pred ---Cee-EEEeeeCcEEEEEcCCC
Confidence 222 24778888888888754
No 93
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=34.34 E-value=27 Score=30.35 Aligned_cols=70 Identities=7% Similarity=0.016 Sum_probs=46.9
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++.... ...+...+.+|++|+++....... .
T Consensus 104 ~~l~~~l~~f~~~~P~i~l~~~~~~-------~~~~~~~l~~g~~Dl~i~~~~~~~---~-------------------- 153 (294)
T 1ixc_A 104 RSLPLLLRAFLTSTPTATVSLTHMT-------KDEQVEGLLAGTIHVGFSRFFPRH---P-------------------- 153 (294)
T ss_dssp THHHHHHHHHHHHCTTEEEEEEECC-------HHHHHHHHHHTSCSEEEESCCCCC---T--------------------
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCC-------HHHHHHHHHCCCccEEEEecCCCC---C--------------------
Confidence 44567888888877 5666665421 125788999999999987554321 1
Q ss_pred cccEEEeceeeccceeEEEEeCCCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+. ..++....+++++++.+.
T Consensus 154 ---~l~-~~~l~~~~~~~v~~~~~p 174 (294)
T 1ixc_A 154 ---GIE-IVNIAQEDLYLAVHRSQS 174 (294)
T ss_dssp ---TEE-EEEEEEEEEEEEEEGGGG
T ss_pred ---Cce-EEEEeeccEEEEEeCCCc
Confidence 222 247788888898886653
No 94
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=34.06 E-value=42 Score=29.75 Aligned_cols=74 Identities=7% Similarity=-0.045 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccc
Q psy936 91 AFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEA 169 (344)
Q Consensus 91 ~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 169 (344)
.-+++..+.+++ +.++++.... .+..+.++.+|++|+++........... .+
T Consensus 18 l~~~~~~f~~~~P~v~i~v~~~~-------S~~~~~~l~~g~~Dig~~~~~~~~~e~~--------------------~~ 70 (264)
T 4ecf_A 18 VEAAGEQYTGEHLGTFINVQGGG-------TGTGLSQIQEGAVQIGNSDLFAGEQKGI--------------------NA 70 (264)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEEC-------HHHHHHHHHHTSSSEEEESSCGGGSTTC--------------------CG
T ss_pred HHHHHHHHHHHCCCceEEEEeCC-------CHHHHHHHHcCCCchhhccCCCChhHHh--------------------hc
Confidence 346667777766 6666655422 1368899999999999876554331000 00
Q ss_pred cEEEeceeeccceeEEEEeCCCC
Q psy936 170 MKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 170 ~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
..+ -..|+..+.++++++..++
T Consensus 71 ~~l-~~~~i~~d~lvvvv~~~~p 92 (264)
T 4ecf_A 71 RQL-VDHRVAVVGITPIVNKKVG 92 (264)
T ss_dssp GGE-ECCEEEEEEEEEEECTTSS
T ss_pred cCC-EEEEEEEEEEEEEEcCCCc
Confidence 022 2458899999999987654
No 95
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=33.85 E-value=1.1e+02 Score=27.49 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=27.2
Q ss_pred HHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeecc
Q psy936 98 LSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVP 140 (344)
Q Consensus 98 la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~ 140 (344)
+.++.|.+++++..+.. . +.++..+.+|++|+++.+..
T Consensus 38 ~~~~~Gl~V~~~~~~~g---~--~~~~~al~~G~~D~~~~~~~ 75 (321)
T 2x7q_A 38 YYKAHDLSIEFVKVPEG---S--GRLINLLNSNEVDIAIGLTE 75 (321)
T ss_dssp HHHHTTCCEEEEECTTC---H--HHHHHHHHTTSCSEEEEEHH
T ss_pred cHHHCCceEEEEECCCC---H--HHHHHHHHcCCccEEecCcH
Confidence 55677999988764321 0 13688999999999987664
No 96
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=33.13 E-value=40 Score=29.37 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=47.0
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-..++..+.+++ +.++++.... ...+...+.+|++|+++....... .
T Consensus 108 ~~l~~~l~~f~~~~P~i~i~l~~~~-------~~~~~~~l~~g~~Dl~i~~~~~~~---~-------------------- 157 (306)
T 3fzv_A 108 LYLPGLIAGFRQAYPGVEIRIRDGE-------QQELVQGLTSGRFDLAFLYEHDLD---S-------------------- 157 (306)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEC-------HHHHHHHHHHTSCSEEEECSSSCC---T--------------------
T ss_pred HHHHHHHHHHHHHCCCeEEEEEeCC-------HHHHHHHHHCCCccEEEEeccccc---c--------------------
Confidence 44567888888887 6777766532 126788999999999987543221 1
Q ss_pred cccEEEeceeec-cceeEEEEeCCCCC
Q psy936 168 EAMKWKWGIELG-QSQYVVMMKRPHES 193 (344)
Q Consensus 168 ~~~~v~fs~p~~-~~~~~~~v~~~~~~ 193 (344)
.+. ..++. ....++++++.+..
T Consensus 158 ---~l~-~~~l~~~~~~~~v~~~~~pl 180 (306)
T 3fzv_A 158 ---TIE-TEPLMPPQRPHALLPEGHRF 180 (306)
T ss_dssp ---TEE-EEESSCCBCCEEEEETTCTT
T ss_pred ---ccc-eeeeeeccccEEEecCCCcc
Confidence 222 23566 67778888876654
No 97
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=29.52 E-value=63 Score=28.84 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=49.9
Q ss_pred eehHHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhcc
Q psy936 89 GIAFEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEE 168 (344)
Q Consensus 89 G~~~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 168 (344)
|+--+|...+.++.+.++++..... +.++.++.+|.+|+.+..-....+. +...
T Consensus 19 ~ll~eL~~~Fek~~gv~V~~~~~gS-------g~ll~qi~~G~aDVfisa~~~~~~~------l~~~------------- 72 (242)
T 3kn3_A 19 GLLDVLAPAYKKDTGVDLKWVAVGT-------GNALKLGENCDVDVVFVHAPKVELE------YVEK------------- 72 (242)
T ss_dssp THHHHHHHHHHHHHSCEEEEEEECH-------HHHHHHHHTTCCSEEEECCHHHHHH------HHHH-------------
T ss_pred hHHHHHHHHHHHHhCCeEEEEEcCc-------HHHHHHHhcCCCCEEEecChHhHHH------HHhc-------------
Confidence 5556788888888888888766432 3688899999999997655322211 1111
Q ss_pred ccEEEeceeeccceeEEEEeCCCC
Q psy936 169 AMKWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 169 ~~~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
....-..++....+++++|+.++
T Consensus 73 -G~~~~~~~~a~N~LVLV~P~~~P 95 (242)
T 3kn3_A 73 -GFGIDRTPVMYNDFVIIGNPSFK 95 (242)
T ss_dssp -TSEEEEEEEECSCEEEEECTHHH
T ss_pred -CCCccceEEEcceEEEEEeCCCc
Confidence 01222357888889999987543
No 98
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=26.47 E-value=55 Score=26.31 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=41.9
Q ss_pred eehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhc
Q psy936 89 GIAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQE 167 (344)
Q Consensus 89 G~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
.+-.+++..+.+++ +.++++.. . ..+..+.+|++|+++....... .
T Consensus 20 ~~l~~~l~~f~~~~P~v~l~i~~--~--------~~~~~l~~g~~D~~i~~~~~~~---~-------------------- 66 (213)
T 3hhf_B 20 HLLAPLAAKFNERYPHIRLSLVS--S--------EGYINLIERKVDIALRAGELDD---S-------------------- 66 (213)
T ss_dssp HTHHHHHHHHHHHCTTEEEEEEC--C--------STTHHHHTTSSSEEEECC--CC---S--------------------
T ss_pred HHHHHHHHHHHHHCCCcEEEEEe--C--------CcHHHHHhCCccEEEEEecCCC---c--------------------
Confidence 34567888888877 66676662 1 1234588999999987543221 1
Q ss_pred cccEEEeceeeccceeEEEEeCC
Q psy936 168 EAMKWKWGIELGQSQYVVMMKRP 190 (344)
Q Consensus 168 ~~~~v~fs~p~~~~~~~~~v~~~ 190 (344)
.+. +.++....+++++++.
T Consensus 67 ---~~~-~~~l~~~~~~~v~~~~ 85 (213)
T 3hhf_B 67 ---GLR-ARHLFDSRFRVIASPE 85 (213)
T ss_dssp ---SEE-EEEEEEECEEEEECHH
T ss_pred ---cce-EEeeecceEEEEeCHH
Confidence 233 3478888888888754
No 99
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=26.23 E-value=87 Score=27.61 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHHHHH-CCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeec
Q psy936 93 EILNTLSAK-YEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFV 139 (344)
Q Consensus 93 ~ll~~la~~-lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~ 139 (344)
.+.+.++++ .+.++++.... .....++.+.+|++|+++...
T Consensus 38 ~la~~~~~~~~g~~v~v~~~~------~~~~~~~~l~~g~~Dl~~~~~ 79 (314)
T 1us5_A 38 GIAKLVNDANVGIRANARSTG------GSVANINAINAGEFEMALAQN 79 (314)
T ss_dssp HHHHHHHHHTSSEEEEEECCS------CHHHHHHHHHTTSCSEEEEEH
T ss_pred HHHHHHHhcCCCceEEEEecC------cHHHHHHHHHcCCCcEEEEcc
Confidence 355555554 57666665311 112678899999999987654
No 100
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=26.14 E-value=51 Score=30.05 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=46.4
Q ss_pred HHHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhccccE
Q psy936 92 FEILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMK 171 (344)
Q Consensus 92 ~~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (344)
-++++.+.+.-+.++++.... .+..+..+.+|++|+++..-.+..+... ++ .
T Consensus 17 ~~~~~~f~~~p~v~i~v~~~g-------S~~~~~~l~~g~~Di~~~~~~~~~~e~~-------------~~--------~ 68 (321)
T 1ixh_A 17 AKWADTYQKETGNKVNYQGIG-------SSGGVKQIIANTVDFGASDAPLSDEKLA-------------QE--------G 68 (321)
T ss_dssp HHHHHHHHHHHCCEEEEEECC-------HHHHHHHHHTTCSSEEEESSCCCHHHHH-------------HH--------T
T ss_pred HHHHHHHHhcCCceEEEecCC-------CHHHHHHHHcCCCcEEecccCCChhhHh-------------hC--------C
Confidence 345555555336666654421 2478899999999999888776554322 00 1
Q ss_pred EEeceeeccceeEEEEeCCCC
Q psy936 172 WKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 172 v~fs~p~~~~~~~~~v~~~~~ 192 (344)
+ -..|+..+.++++++.++.
T Consensus 69 l-~~~~~~~d~lvvvv~~~~~ 88 (321)
T 1ixh_A 69 L-FQFPTVIGGVVLAVNIPGL 88 (321)
T ss_dssp E-EEEEEEEEEEEEEECCTTC
T ss_pred C-EEeeeeeeeEEEEEeCCCC
Confidence 1 1358889999999987654
No 101
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=25.99 E-value=1.5e+02 Score=26.31 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=26.0
Q ss_pred HHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeec
Q psy936 98 LSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFV 139 (344)
Q Consensus 98 la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~ 139 (344)
+.+++ +.+++++..+.. ..++..+.+|++|+++.+.
T Consensus 51 ~~~~~~g~~v~~~~~~~~------~~~~~al~~G~~D~~~~~~ 87 (324)
T 3ksx_A 51 LEQRFPRTKITWVEFPAG------PQLLEALNVGSIDLGGAGD 87 (324)
T ss_dssp HHHHCTTSEEEEEEESSH------HHHHHHHHTTSCSEEEEES
T ss_pred HHHhcCCCceEEEECCCH------HHHHHHHHCCCCCEEeecC
Confidence 45555 888888764321 2688999999999986654
No 102
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=25.44 E-value=36 Score=29.00 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=28.7
Q ss_pred eeeeecCCCCCCCCCHHHHhCCCCcEEEEcCchhhHhhhhc
Q psy936 290 TAFLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKLY 330 (344)
Q Consensus 290 ~s~Lt~~~~~~~I~TledL~~s~~~~g~~~~~~~e~~l~~~ 330 (344)
...+....-...+++++||. |.++|+..|+..+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~dL~--g~~v~v~~gs~~~~~~~~~ 136 (243)
T 4gvo_A 98 PLQLTVLDSNNSINSTKDLA--GKRVITSATSNGALVLKKI 136 (243)
T ss_dssp CEEEEEETTCCSCSSGGGGT--TCEEEECTTCHHHHHHHHH
T ss_pred cceEEEeccccccCchHHhc--CCeEEEecCchHHHHHHHH
Confidence 33444444567899999996 4678999999888887764
No 103
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=24.11 E-value=1.2e+02 Score=26.71 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=45.0
Q ss_pred HHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhcccc
Q psy936 92 FEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAM 170 (344)
Q Consensus 92 ~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (344)
-.++..+.+++ +.++++.... .+..+.++.+|++|+++....... ... ..+.
T Consensus 19 ~~~~~~F~~~~P~v~i~v~~~g-------S~~gi~~l~~g~~Dig~~~~~~~~-~~~-------------------~~~~ 71 (265)
T 4exl_A 19 EVAADEFGTIHVGKTVNVQGGG-------SGTGLSQVQSGAVDIGNSDVFAEE-KDG-------------------IDAS 71 (265)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEC-------HHHHHHHHHTTSSSEEEESSCGGG-STT-------------------CCGG
T ss_pred HHHHHHHHHHCCCceEEEeeCC-------cHHHHHHHHcCCCccccccCCcch-hhc-------------------cccc
Confidence 45566666666 6777765432 137889999999999987543221 000 0000
Q ss_pred EEEeceeeccceeEEEEeCCCC
Q psy936 171 KWKWGIELGQSQYVVMMKRPHE 192 (344)
Q Consensus 171 ~v~fs~p~~~~~~~~~v~~~~~ 192 (344)
.+. ..|+..+.++++++..+.
T Consensus 72 ~l~-~~~ia~d~lvvvv~~~~~ 92 (265)
T 4exl_A 72 ALV-DHKVAVAGLALIVNKEVD 92 (265)
T ss_dssp GEE-CCEEEEEEEEEEECTTCC
T ss_pred Cce-EeeEEEEEEEEEECCCCc
Confidence 222 458888999999986554
No 104
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=23.48 E-value=90 Score=27.51 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=50.0
Q ss_pred CCceEEeeeh--HHHHHHHHHHC-----CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhh
Q psy936 82 TGKLEGHGIA--FEILNTLSAKY-----EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVK 154 (344)
Q Consensus 82 ~g~~~~~G~~--~~ll~~la~~l-----nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~ 154 (344)
.+++...|-. ..+++++++.+ |.++++... | .++.+.++.+|.+|++..+-.+..+...
T Consensus 36 ~~~i~i~GSss~~p~~~~~a~~f~~~~p~v~v~~~~~-----G--Sg~g~~~~~~G~~di~~as~~~~~~e~~------- 101 (279)
T 4gd5_A 36 TNSVSISGSTSVGPVMEAEAEAFKTKKPDVSIEINQI-----G--SSAGIKNAMEGVSEIGMASRDLKGEEKQ------- 101 (279)
T ss_dssp -CEEEEEECTTTHHHHHHHHHHHHHHSTTCEEEEEEC-----C--HHHHHHHHHHTSSSEEEESSCCCHHHHT-------
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHHHHCCCceEEEeeC-----C--cHHHHHHHHcCCCcEEEecchhhhhHhh-------
Confidence 3445555542 45666666544 566665432 1 2477889999999999877665543222
Q ss_pred hHHHHHHHHhhhccccEEEeceeeccceeEEEEeCCCCC
Q psy936 155 SEEEELKLQLQQEEAMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 155 ~~~~~~~~~~~~~~~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
+ .+. ..|+..+..++++++.+..
T Consensus 102 --------------~-~~~-~~~ia~d~~~vivn~~n~~ 124 (279)
T 4gd5_A 102 --------------A-GLK-EVEIAYDGIALITHKNNPV 124 (279)
T ss_dssp --------------T-CCE-EEEEEEEEEEEEEETTCSC
T ss_pred --------------c-Cce-EEEEEeeceeeeeccCCcc
Confidence 0 111 2477888899999876543
No 105
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=21.77 E-value=1.1e+02 Score=28.19 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccch
Q psy936 93 EILNTLSAKYEFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVL 142 (344)
Q Consensus 93 ~ll~~la~~lnft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~ 142 (344)
.+.+.+.++.|-++++...+.+..|. ...+++.+..|.+|++.......
T Consensus 54 ~fa~~v~e~t~G~v~i~v~~~g~Lg~-~~~~~e~v~~G~id~~~~~~~~~ 102 (361)
T 2zzv_A 54 KFTERVKELTDGQLEVQPFPAGAVVG-TFDMFDAVKTGVLDGMNPFTLYW 102 (361)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTSSSC-GGGHHHHHHHTSSSEEECBGGGG
T ss_pred HHHHHHHHhcCCeEEEEEeCCCcccC-HHHHHHHHHcCceeEEEeccccc
Confidence 57788888888777777766665554 34789999999999997765433
No 106
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=20.61 E-value=80 Score=27.99 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=45.0
Q ss_pred ehHHHHHHHHHHC-CCcEEEEeeCCCCCCCCchhhhhhcccceecEEEeeccchhhhhHHHhhhhhhHHHHHHHHhhhcc
Q psy936 90 IAFEILNTLSAKY-EFSYEIILPSRKTLLDQDGSIMNILKTGEVDMVAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEE 168 (344)
Q Consensus 90 ~~~~ll~~la~~l-nft~~~~~~~~~~~G~~~~g~~~~l~~g~~Di~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 168 (344)
+-..++..+.+++ +.++++.... ...+.+.+.+|++|+++....... ..
T Consensus 107 ~l~~~l~~f~~~~P~v~i~l~~~~-------~~~~~~~l~~g~~Dlai~~~~~~~--~~--------------------- 156 (324)
T 1al3_A 107 ALPGVIKGFIERYPRVSLHMHQGS-------PTQIAEAVSKGNADFAIATEALHL--YD--------------------- 156 (324)
T ss_dssp TSHHHHHHHHHHCTEEEEEEEECC-------HHHHHHHHHTTCCSEEEESSCCCT--TS---------------------
T ss_pred HHHHHHHHHHHHCCCCEEEEEECC-------HHHHHHHHHCCCceEEEEecCCCC--CC---------------------
Confidence 3457777888776 4556655421 126788999999999987533211 11
Q ss_pred ccEEEeceeeccceeEEEEeCCCCC
Q psy936 169 AMKWKWGIELGQSQYVVMMKRPHES 193 (344)
Q Consensus 169 ~~~v~fs~p~~~~~~~~~v~~~~~~ 193 (344)
.+.. .++....++++++..+..
T Consensus 157 --~l~~-~~L~~~~~~~v~~~~~pl 178 (324)
T 1al3_A 157 --DLVM-LPCYHWNRSIVVTPEHPL 178 (324)
T ss_dssp --CEEE-EEEEEECEEEEECTTSTT
T ss_pred --CeeE-EEecCCceEEEEcCCCcc
Confidence 2222 467777888888876543
No 107
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=20.05 E-value=1e+02 Score=26.14 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=27.9
Q ss_pred eeecCCCCCCCCCHHHHhCCCCcEEEEcCchhhHhhhh
Q psy936 292 FLTLSQFTLPIHSVEDIANPTNTWCAEAGGAVEYSIKL 329 (344)
Q Consensus 292 ~Lt~~~~~~~I~TledL~~s~~~~g~~~~~~~e~~l~~ 329 (344)
++.......+|++++||.+ .++|+..|+..+.+++.
T Consensus 119 ~~~~~~~~~~i~~~~dL~g--~~v~v~~g~~~~~~l~~ 154 (259)
T 4dz1_A 119 LVSMANHKITLNNLNELNK--YSIGYPRGMAYSDLIKN 154 (259)
T ss_dssp EEEETTSCCCCCSGGGGGG--SCEEEETTSTHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHhCC--CEEEEeCCcHHHHHHHH
Confidence 4444444558999999975 57899999999888876
Done!