RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy936
         (344 letters)



>d1iyra_ a.164.1.1 (A:) C-terminal domain of DFF45/ICAD (DFF-C
           domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 28.0 bits (62), Expect = 0.41
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 135 VAAFVPVLNIKKNKMAALVKSEEEELKLQLQQEEAMK 171
             A    LN    K   + ++ E EL L+LQQ +++ 
Sbjct: 44  PKALAVALNWDIKKTETVQEACERELALRLQQTQSLH 80


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 28.4 bits (63), Expect = 0.45
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 1/87 (1%)

Query: 209 FLILISLVLIGPIMHAIMRVRRWLSGTQSELYPISACTWFVYGALMKQGSTLNPRTDSTR 268
           F  L +L ++   + A++                    +F    L   G           
Sbjct: 29  FASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA 88

Query: 269 IMFASWWIFI-MILTAFYTANLTAFLT 294
              A+  IF+ M   A  T  + A   
Sbjct: 89  HAIATLEIFVGMSGIALSTGLVFARFA 115


>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene
           alkA or aidA) {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 25.0 bits (55), Expect = 5.9
 Identities = 4/25 (16%), Positives = 8/25 (32%)

Query: 208 WFLILISLVLIGPIMHAIMRVRRWL 232
              I +S  L       + ++ R  
Sbjct: 58  TLHINLSAGLEPVAAECLAKMSRLF 82


>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 304

 Score = 25.9 bits (56), Expect = 8.4
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 45  PDSWLIIEQLRLPIEPTIPSF---LFQDQKPMSWVTTNNKTGKLEGHGIAFEILNTLSAK 101
           PDS          +  +  S+     +D     W+T N   G   G  +  +I++   AK
Sbjct: 237 PDSSRFWNGASYKVGESQDSYDKQFLRD-----WLTANKLNGV-NGVKMPQDIVDRTRAK 290

Query: 102 YEFSYEII 109
           Y  +YE +
Sbjct: 291 YIEAYETL 298


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,302,669
Number of extensions: 58871
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 8
Length of query: 344
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,226,816
Effective search space: 316518528
Effective search space used: 316518528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)