BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9360
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 54 SEEIMKKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKA 113
S + + +L+ EK + C +C F EH R H ++P+ C C K+
Sbjct: 7 SSSVAQAALEPGEKPY------ACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS 58
Query: 114 FKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFI 173
F DL++H H G++PYKC CG+ F + H+R H KPY+C CG+SF
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFS 116
Query: 174 SNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTYKHQ 232
H H R H G KPY C C + F +L H + HT ++ + C C K++ +
Sbjct: 117 QLAHLRAHQRTHTGEKPYKC--PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 233 QSI 235
++
Sbjct: 175 DAL 177
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 59 KKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSG 118
KK L ++ EK + C +C F +A H R H ++P+ C C K+F
Sbjct: 62 KKDLTRHQRTHTGEKPYKCP--ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 119 DLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHK 178
L H H G++PYKC CG+ F H+R H KPY C CG+SF
Sbjct: 120 HLRAHQRTHTGEKPYKC--PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Query: 179 NNHLRIHYGLK 189
N H R H G K
Sbjct: 178 NVHQRTHTGKK 188
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 102 QRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLD 159
+RPF C Y C+K + L HS H G++PY+C++ C R F Q + H+R H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 160 SKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIH 215
KP+ C C R F + H H R H G KP+ C C++KF L +H +H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGL 188
RP+ C Y C + + + Q+H R H KPY C C R F + H R H G+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNL--CNKTYKHQQSIL 236
KP+ C + C+RKF LK HT+ HT ++ F C C K + ++
Sbjct: 65 KPFQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 62 LQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLS 121
LQ + EK + C ++DC F + + H R H +PF C+ C + F S L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 122 KHSAIHNGDRPYKCNYTSCGRHF 144
H+ H G++P+ C + SC + F
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKF 106
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 76 VCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPY 133
+C Y CN + + + H+R H ++P+ C + C++ F S L +H H G +P+
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF 67
Query: 134 KCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+C +C R F + H R H KP+SC
Sbjct: 68 QCK--TCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 159 DSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ +P+ C C + + +H H R H G KPY C + C+R+F LK+H + HT
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 217 Q-QTFHCNLCNKTY 229
+ F C C + +
Sbjct: 63 GVKPFQCKTCQRKF 76
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F T H R H KP+ C +C R+F +T N H+R H G K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
P+ C + C RKF L + +HTKIH +Q
Sbjct: 62 PFACDI--CGRKFATLHTRDRHTKIHLRQ 88
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F + + H R+H Q+PF CR C + F L++H H G++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
P+ C+ CGR F T R H + HL K
Sbjct: 62 PFACDI--CGRKFATLHTRDRHTKIHLRQK 89
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F T H R H KP+ C +C R+F N H+R H G K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
P+ C + C RKF L + +HTKIH +Q
Sbjct: 62 PFACDI--CGRKFATLHTRTRHTKIHLRQ 88
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F + + H R+H Q+PF CR C + F L+ H H G++
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
P+ C+ CGR F T R H + HL K
Sbjct: 62 PFACDI--CGRKFATLHTRTRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTYKHQQSI 235
+PY C VE C R+F ++L H +IHT Q+ F C +C + + Q S+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASL 50
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 101 VQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDS 160
+++P+ C C K+F S +L KH H G++PYKC CG+ F + Q H+R H
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKC--PECGKSFSQSSDLQKHQRTHTGE 58
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KPY C CG+SF + H + H R H K
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
EK + C +C F + ++H R H ++P+ C C K+F S DL KH H G++
Sbjct: 2 EKPYKCP--ECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
PYKC CG+ F H+R H + K
Sbjct: 60 PYKC--PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
++PYKC CG+ F + Q H+R H KPY C CG+SF ++ H R H G K
Sbjct: 2 EKPYKC--PECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIH 215
PY C C + F L +H + H
Sbjct: 60 PYKC--PECGKSFSRSDHLSRHQRTH 83
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQT 219
KPY C CG+SF +++ H R H G KPY C C + F S L+KH + HT ++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKC--PECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 220 FHCNLCNKTY 229
+ C C K++
Sbjct: 61 YKCPECGKSF 70
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F + H R H KP+ C +C R+F + H H+R H G K
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
P+ C + C RKF K+HTKIH +Q
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQ 88
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F AE H R+H Q+PF CR C + F S L+ H H G++
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
P+ C+ CGR F +R+ H + HL K
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F + H R H KP+ C +C R+F + H H+R H G K
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
P+ C + C RKF K+HTKIH +Q
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQ 88
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F + H R+H Q+PF CR C + F S L+ H H G++
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
P+ C+ CGR F +R+ H + HL K
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 77 CTYEDCNSVFQTQAEWEEHAR---MHAVQRPF-----GCRYCDKAFKTSGDLSKHSAIHN 128
C ++ C+ F +Q + H +H ++ F GC + FK L H H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 129 GDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC--HVCGRSFISNTHKNNHL-RIH 185
G++P+KC + C + + + H R H KPY C C ++F + + + H R H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 186 YGLKPYVCHVEGCKRKFVDLSSLKKHTKI 214
KPYVC + GC +++ D SSL+KH K
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKH-SAIHN 128
EK H CT+E C + + H R H ++P+ C + C KAF + D +KH + H+
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 129 GDRPYKCNYTSCGRHF 144
++PY C C + +
Sbjct: 125 NEKPYVCKLPGCTKRY 140
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 135 CNYTSCGRHFRTHTQRQIH---ERCHLDSKPYSCHVCG-----RSFISNTHKNNHLRIHY 186
C + C + F + Q H E H + K + CH G R F + H+R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 187 GLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
G KP+ C EGC++ + L +LK H + HT +
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE 95
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F + H R H KP+ C +C R+F + H H+R H G K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
P+ C + C RKF K+HTKIH +Q
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQ 88
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F E H R+H Q+PF CR C + F S L+ H H G++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
P+ C+ CGR F +R+ H + HL K
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F + H R H KP+ C +C R+F + H H+R H G K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
P+ C + C RKF K+HTKIH +Q
Sbjct: 61 PFACDI--CGRKFARSDERKRHTKIHLRQ 87
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F E H R+H Q+PF CR C + F S L+ H H G++
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHL 158
P+ C+ CGR F +R+ H + HL
Sbjct: 61 PFACDI--CGRKFARSDERKRHTKIHL 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F H R H KP+ C +C R+F + H H+R H G K
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
P+ C + C RKF K+HTKIH +Q
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQ 88
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F A+ H R+H Q+PF CR C + F S L+ H H G++
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
P+ C+ CGR F +R+ H + HL K
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Query: 73 KLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGD 130
K ++C++ DC + + + + H H ++PF C+ C+K F + L++HS H G+
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 131 RPYKCNYTSCGRHFRTHTQRQIH-ERCH-LDSKPYSCHV--CGRSFISNTHKNNHLRIHY 186
+ + C+ C F T + H R H + Y CH CG++F + H H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 187 GLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
PY C EGC ++F S LK+H K+H
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHA-RMHAVQR-PFGCRY--CDKAFKTSGDLSKHSAIH 127
EK C + C+ F T+A ++H R H ++ + C + C KAFK L H H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 128 NGDRPYKCNYTSCGRHFRTHTQRQIHERCHLD---SKPYSCHVCGRSF 172
PY+C + C + F ++ + HE+ H K SC G+++
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 168 CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCN 223
CG ++ N HL H G KP+ C EGC++ F L L +H+ HT ++ F C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 76
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F H R H KP+ C +C R+F + H H+R H G K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
P+ C + C RKF K+HTKIH +Q
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQ 88
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F H R+H Q+PF CR C + F S L+ H H G++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
P+ C+ CGR F +R+ H + HL K
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLRQK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+RPY C SC R F + H R H KP+ C +C R+F + H H+R H G K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217
P+ C + C RKF K+HTKIH +
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHLR 87
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F E H R+H Q+PF CR C + F S L+ H H G++
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHL 158
P+ C+ CGR F +R+ H + HL
Sbjct: 62 PFACDI--CGRKFARSDERKRHTKIHL 86
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTY 229
+PY C VE C R+F L +H +IHT Q+ F C +C + +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 44
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 76 VCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
C ++ C +F+ + +H H R C C KAF S L +H +H G++P++C
Sbjct: 7 ACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 136 NYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLK 189
+ CG+ F + H R H +PY C C + F +T+ +H+ H K
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 110 CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV-- 167
C K F+ + + KH H G R + C CG+ F ++ + H+ H KP+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 168 CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217
CG+ F + + H+RIH G +PYVC +GC +KF ++LK H H +
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 73 KLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGD 130
++HVC +C F ++ + H +H ++PF C + C K F +L H IH GD
Sbjct: 33 RVHVCA--ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
RPY C + C + F T + H H +K
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 62 LQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGD 119
L+ + + EK CT+E C F H R+H RP+ C + C+K F S +
Sbjct: 50 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 120 LSKHSAIH 127
L H H
Sbjct: 110 LKSHILTH 117
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLR 183
S+ +GD+ Y C CG+ F +QR H HL +PY C VCG+ F H H++
Sbjct: 2 SSGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Query: 184 IHYGLKPYVCHVEGCKRKFVDLSSLKKHT 212
IH G+KPY C++ C ++F+ S +H
Sbjct: 59 IHTGIKPYECNI--CAKRFMWRDSFHRHV 85
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+KL+ C C F +++ + H MH RP+GC C K FK L H IH G +
Sbjct: 8 DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 132 PYKCNYTSCGRHF 144
PY+CN C + F
Sbjct: 65 PYECNI--CAKRF 75
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 110 CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCG 169
C K+F +H ++H G RPY C CG+ F+ H + H KPY C++C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 170 RSFI 173
+ F+
Sbjct: 73 KRFM 76
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
F C+ C K+FK S LS H IH+ RPY C Y CG+ F + + H H KP+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 165 CHVCGRSFISNTHKNNHLRIHYG 187
C VCG++F +++ H R H G
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 82 CNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCG 141
C F+ + H +H+ RP+ C+YC K F D+ KH+ IH G++P+KC CG
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CG 64
Query: 142 RHFRTHTQRQIHERCH 157
+ F + H R H
Sbjct: 65 KAFSQSSNLITHSRKH 80
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFH- 221
+ C +CG+SF ++ + HL IH +PY C + C ++F S +KKHT IHT + H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 222 CNLCNKTYKHQQSIL 236
C +C K + +++
Sbjct: 60 CQVCGKAFSQSSNLI 74
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 140 CGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCK 199
CG+ F+ + H H D++PY C CG+ F + H IH G KP+ C V C
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CG 64
Query: 200 RKFVDLSSLKKHTKIHT 216
+ F S+L H++ HT
Sbjct: 65 KAFSQSSNLITHSRKHT 81
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 68 IFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
I + + C Y C F +++ ++H +H ++P C+ C KAF S +L HS H
Sbjct: 23 IHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Query: 128 NG 129
G
Sbjct: 81 TG 82
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 108 RYCDKAFKTSGDLSKHSAIHNGDRPYK----CNYTSC---GRHFRTHTQRQIHERCHLDS 160
+ CD+ F T +L H + + P + C + C G+ F+ + H R H
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 161 KPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
KP+ C CG+ F + + H R H G KP+ C EGC R+F + S KKH +HT
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 75 HVCTYEDC---NSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNG 129
HVC +E+C F+ + + H R+H ++PF C + C K F S +L H H G
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
++P+KC + C R F + R+ H H K
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 80 EDCNSVFQTQAEWEEHARMHAVQRPFG---------CRYCDKAFKTSGDLSKHSAIHNGD 130
+ C+ F T E H M V P C K+FK L H +H G+
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIH 185
+P+ C + CG+ F +IH+R H KP+ C C R F +++ + H+ +H
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 67 KIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHS 124
++ EK C + C +F + H R H ++PF C + CD+ F S D KH
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 125 AIHNGDR 131
+H D+
Sbjct: 143 HVHTSDK 149
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 140 CGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCK 199
CGRHF IHER H D +PY+C +C ++F H +H IH KP+ C + C
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECG 80
Query: 200 RKFVDLSSLKKHTKIHTQQT 219
+ F +L H +H Q +
Sbjct: 81 KGFCQSRTLAVHKTLHMQTS 100
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 76 VCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
+C + C F H R H +RP+ C C KAF+ L H IH+ ++P+KC
Sbjct: 19 ICKF--CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 136 NYTSCGRHFRTHTQRQIHERCHLDS 160
CG+ F +H+ H+ +
Sbjct: 77 Q--ECGKGFCQSRTLAVHKTLHMQT 99
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQT 219
K + C CGR F + + H R H +PY C + C + F L+ H IH+ ++
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKP 73
Query: 220 FHCNLCNKTY 229
F C C K +
Sbjct: 74 FKCQECGKGF 83
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIH 153
E R+H P C K + S L H H G++PYKC + C F + H
Sbjct: 11 EKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 154 ERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
R H +KP+ C VC RSF + H H++ H
Sbjct: 67 YRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 69 FEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAI 126
EK ++H C Y C V+ + + H R H ++P+ C + CD F S +L++H
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 127 HNGDRPYKCNYTSCGRHFRTHTQRQIHERCH 157
H G +P++C C R F +H + H
Sbjct: 70 HTGAKPFQCGV--CNRSFSRSDHLALHMKRH 98
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 168 CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCN 226
C + + ++H HLR H G KPY C EGC +F L +H + HT + F C +CN
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 227 KTY 229
+++
Sbjct: 83 RSF 85
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC--HVCGRSFISNTHKNNHLRIHYGL 188
R + C+Y C + + + + H R H KPY C C F + H R H G
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIH 215
KP+ C V C R F L H K H
Sbjct: 74 KPFQCGV--CNRSFSRSDHLALHMKRH 98
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 80 EDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTS 139
E C F + + + H R H +P+ C+ CD A S L+KH IH+ +RP+KC
Sbjct: 12 EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI-- 69
Query: 140 CGRHFRTHTQRQIHERCHL-DSKPYS 164
C R +Q +H R H DS P S
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 160 SKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQ 218
S P+ C VCG+ F H+R H G+KPY C C D SSL KH +IH+ ++
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDER 63
Query: 219 TFHCNLC 225
F C +C
Sbjct: 64 PFKCQIC 70
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPY 191
P+KC CG+ F + + H RCH KPY C C + ++ N HLRIH +P+
Sbjct: 8 PHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 192 VCHVEGCKRKFVDLSSLKKHTKIHT 216
C + C + S L H + HT
Sbjct: 66 KCQI--CPYASRNSSQLTVHLRSHT 88
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 104 PFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPY 163
P C C K F L H H G +PYKC +C + H R H D +P+
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHSDERPF 65
Query: 164 SCHVCGRSFISNTHKNNHLRIHYG 187
C +C + +++ HLR H G
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTG 89
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 107 CRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDS--KPYS 164
C C K F+ L++H H+G++PY C CG F+ + H R H S KPY
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 165 CHVCGRSFISNTHKNNHLR-IHYG 187
C CG+ F H N H++ +H G
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 140 CGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGL--KPYVCHVEG 197
CG+ FR H+ H KPYSC VCG F + H+R H G KPY+C +
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QS 70
Query: 198 CKRKFVDLSSLKKHTK-IHTQQT 219
C + F L H K +H+ +
Sbjct: 71 CGKGFSRPDHLNGHIKQVHSGPS 93
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 80 EDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNG--DRPYKCNY 137
E C +F+ H H+ ++P+ C C FK +S H H+G +PY C
Sbjct: 11 EICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ- 69
Query: 138 TSCGRHF 144
SCG+ F
Sbjct: 70 -SCGKGF 75
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 160 SKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIH---T 216
S +C +CG+ F H N H H G KPY C V C +F + H + H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSV 62
Query: 217 QQTFHCNLCNKTY 229
+ + C C K +
Sbjct: 63 GKPYICQSCGKGF 75
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 110 CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCG 169
C K + S L H H G++PY C++ CG F + H R H +P+ C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 170 RSFISNTHKNNHLRIHY 186
R+F + H H++ H+
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 168 CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCN 226
CG+++ ++H HLR H G KPY C +GC KF L +H + HT + F C C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 227 KTY 229
+ +
Sbjct: 73 RAF 75
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 70 EKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIH 127
++ H C Y C + + + H R H ++P+ C + C F S +L++H H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 128 NGDRPYKCNYTSCGRHFRTHTQRQIHERCHL 158
G RP++C C R F +H + H
Sbjct: 61 TGHRPFQCQ--KCDRAFSRSDHLALHMKRHF 89
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 135 CNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYV 192
C+Y CG+ + + + H R H KPY C CG F + H R H G +P+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 193 CHVEGCKRKFVDLSSLKKHTKIH 215
C + C R F L H K H
Sbjct: 68 C--QKCDRAFSRSDHLALHMKRH 88
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 62 LQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLS 121
L+ + EK + C ++ C F E H R H RPF C+ CD+AF S L+
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 122 KHSAIH 127
H H
Sbjct: 83 LHMKRH 88
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 110 CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCG 169
C K + S L H H G++PY C++ CG F + H R H +P+ C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 170 RSFISNTHKNNHLRIHY 186
R+F + H H++ H+
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 168 CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCN 226
CG+++ ++H HLR H G KPY C +GC KF L +H + HT + F C C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 227 KTY 229
+ +
Sbjct: 74 RAF 76
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 70 EKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIH 127
+ H C Y C + + + H R H ++P+ C + C F S +L++H H
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 128 NGDRPYKCNYTSCGRHFRTHTQRQIHERCHL 158
G RP++C C R F +H + H
Sbjct: 62 TGHRPFQCQ--KCDRAFSRSDHLALHMKRHF 90
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 135 CNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYV 192
C+Y CG+ + + + H R H KPY C CG F + H R H G +P+
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 193 CHVEGCKRKFVDLSSLKKHTKIH 215
C + C R F L H K H
Sbjct: 69 C--QKCDRAFSRSDHLALHMKRH 89
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 62 LQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLS 121
L+ + EK + C ++ C F E H R H RPF C+ CD+AF S L+
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 122 KHSAIH 127
H H
Sbjct: 84 LHMKRH 89
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 73 KLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGD 130
K ++C++ DC + + + + H H ++PF C+ C+K F + L++HS H G+
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 131 RPYKCNYTSCGRHFRTHTQRQIH 153
+ + C+ C F T + H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKH 84
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC--HVCGRSFISNTHKNNHLRIHYGL 188
+ Y C++ CG + + + Q H H KP+ C C + F S H H H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 189 KPYVCHVEGCKRKFVDLSSLKKH 211
K + C +GC +F +++KKH
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKH 84
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 168 CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCN 223
CG ++ N HL H G KP+ C EGC++ F L L +H+ HT ++ F C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
+P+ C C +F+ G+L+ H +H G++PY+CN CG F + H R H KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
D+PYKC+ C FR H+ H KPY C++CG F + H RIH G K
Sbjct: 15 DKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Query: 190 P 190
P
Sbjct: 73 P 73
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
KPY C C SF + +H +H G KPY C++ C +F ++LK HT+IH+ +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGE 71
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 80 EDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+ C + F+ + H +H ++P+ C C F +L H+ IH+G++P
Sbjct: 21 DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 91 EWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQR 150
EW++ R R + C C K+F S DLSKH H G++PYKC+ CG+ F +
Sbjct: 10 EWQQRER-----RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHL 62
Query: 151 QIHERCHLDSKPYS 164
H R H S P S
Sbjct: 63 IGHHRVHTGSGPSS 76
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
R YKC+ CG+ F + H R H KPY C CG++FI +H H R+H G P
Sbjct: 17 RRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 159 DSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ + Y C CG+SF ++ + H R H G KPY C + C + F+ S L H ++HT
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHT 70
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 80 EDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++C F ++ +H R H ++P+ C C KAF L H +H G P
Sbjct: 22 DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
++P+GC C KAF S L +H +H G++PYKC CG+ F ++ H+R H S
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIH-TSG 68
Query: 162 PYS 164
P S
Sbjct: 69 PSS 71
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
++PY C CG+ F + H+R H KPY C CG++F N+ NH RIH
Sbjct: 12 EKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
KPY C CG++F ++ H R+H G KPY C +E C + F S L H +IHT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC-LE-CGKAFSQNSGLINHQRIHT 66
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHN 128
EK + C +C F + +H R+H ++P+ C C KAF + L H IH
Sbjct: 12 EKPYGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKI 214
KP+ C +C R+F + H H+R H G KP+ C + C RKF K+H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDI 53
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIH 153
+PF CR C + F S L+ H H G++P+ C+ CGR F +R+ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRH 50
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGL 188
+P++C C R+F H R H KP++C +CGR F + + H I + L
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 82 CNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAI 126
C F H R H ++PF C C + F S + +H I
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 68 IFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
+ K + + C E C+ F E H R+H Q+PF CR C + F S L+ H H
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
RPY C SC R F + H R H KP+ C +C R+F + H H+R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 188 LKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTY 229
++PY C VE C R+F L +H +IHT Q+ F C +C + +
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 161 KPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+PY+C V C R F + H+RIH G KP+ C + C R F L H + HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 102 QRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCH 157
RP+ C CD+ F S +L++H IH G +P++C C R+F H R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 72
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
+RP+ CN+ CG+ +R + H R HL +P SC CG+ F + N HL++H
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCH 157
+RPF C +C K ++ + LS+H H G RP C CG+ FR ++ H + H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVH 55
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQT 219
+P+ C+ CG+++ + + H R H G +P C C + F D S + +H K+H +
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVHQNKP 59
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
E+ C + C ++ + H R H RP C C K F+ ++++H +H
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 155 RCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKI 214
R H+ S P CG+++ ++H H R H G KP+ C +GC+R+F L +H +
Sbjct: 16 RSHICSHP----GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 215 H 215
H
Sbjct: 72 H 72
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 73 KLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIH 127
+ H+C++ C + + + H R H ++PF C + C++ F S +LS+H H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 110 CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCH 157
C K + S L H+ H G++P+ C++ C R F + H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC--HVCGRSFISNTHKNNHLRIH 185
R + C++ CG+ + + + H R H KP+SC C R F + + H R H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 188 LKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCN 223
++ ++C GC + + S LK HT+ HT ++ F C+
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 66 EKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSA 125
E I + ++C C + H +H+ ++ + CRYC+K F + +KH
Sbjct: 14 ELIVDGRVYYICIV--CKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI 71
Query: 126 IHNGDRPYKCNYTSCGRHF 144
H G+R Y+C +CG+ F
Sbjct: 72 HHTGERRYQC--LACGKSF 88
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
+ C C +++ L +H IH+ ++ Y C Y C + F R HE H + Y
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 165 CHVCGRSFISNTHKNNHLR 183
C CG+SFI+ ++H++
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFH 221
Y C VC RS++ T H IH K Y C C++ F KH HT ++ +
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 222 CNLCNKTYKHQQ 233
C C K++ + Q
Sbjct: 81 CLACGKSFINYQ 92
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
R Y C TS RHF H+ K Y C C + F ++ H H G +
Sbjct: 30 RSYVC-LTSLRRHFNIHSW----------EKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 191 YVCHVEGCKRKFVDLSSLKKHTK-IHTQ 217
Y C C + F++ + H K +H+Q
Sbjct: 79 YQC--LACGKSFINYQFMSSHIKSVHSQ 104
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 82 CNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSA---IHNGDRPYKCNYT 138
C+ F ++ + H R H ++PF C C K + +L +H A ++ ++ + C+
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV- 71
Query: 139 SCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHL-RIHYG 187
C FR + ++H H PY C C + F+ +H+ ++H G
Sbjct: 72 -CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 107 CRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGR-HFRT-----HTQRQIHERCHLDS 160
C C K F + L H+ H G++P++C CG+ +FR H R R
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNR---SE 64
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKH-TKIHT 216
+ ++C VC +F H+ H G PY C C ++F+ L+ H K+H+
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHS 119
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 65 DEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHS 124
EK FE K C + N + E E M+ ++ F C C + F+ +L H
Sbjct: 32 GEKPFECPKCGKCYFRKENLL-----EHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
Query: 125 AIHNGDRPYKCNYTSCGRHFRTHTQRQIH 153
H G+ PYKC +SC + F Q H
Sbjct: 87 VSHTGEMPYKC--SSCSQQFMQKKDLQSH 113
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 165 CHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIH----TQQTF 220
C C + F+S + H R H G KP+ C C + + +L +H + ++Q F
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 221 HCNLCNKTYKHQQSI 235
C++C +T++ + +
Sbjct: 68 TCSVCQETFRRRMEL 82
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 139 SCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLR---IHYGLKPYVCHV 195
+C + F + ++H R H KP+ C CG+ + + H ++ + + C V
Sbjct: 12 TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV 71
Query: 196 EGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTYKHQQSI 235
C+ F L+ H HT + + C+ C++ + ++ +
Sbjct: 72 --CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIH 185
KPYSC+VCG++F+ + H N HLR+H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTF 220
KPY C+V C + FV + L +H ++HTQ+T
Sbjct: 11 KPYSCNV--CGKAFVLSAHLNQHLRVHTQETL 40
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIH 127
++P+ C C KAF S L++H +H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG+ F N+H NH RIH G+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F + L+ H IH G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PYKCN CG+ F ++ H+R H KP
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG+SFI +H N H RIH G KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K+F L++H IH G++P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 80 EDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKH 123
E+C + + ++H R H RP+ C YC+ +FKT G+L+KH
Sbjct: 5 EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 140 CGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLR 183
CG + + + H R H D +PY C C SF + + H++
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG+ F N+H NH RIH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F + L+ H IH G++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 74 LHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNG 129
++VC +E+C F+ + + H H Q P+ C + CDK F L +H +H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 28/84 (33%)
Query: 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYV 192
Y C++ +CG+ F+ H Q ++H+ H PY C P+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC------------------------PH- 36
Query: 193 CHVEGCKRKFVDLSSLKKHTKIHT 216
EGC ++F S LK+H K+H
Sbjct: 37 ---EGCDKRFSLPSRLKRHEKVHA 57
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 110 CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLD---SKPYSCH 166
C KAFK L H H PY+C + C + F ++ + HE+ H K SC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 167 VCGRSF 172
G+++
Sbjct: 69 FVGKTW 74
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 74 LHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNG 129
++VC +E+C F+ + + H H Q P+ C + CDK F L +H +H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 28/84 (33%)
Query: 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYV 192
Y C++ +CG+ F+ H Q ++H+ H PY C P+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC------------------------PH- 36
Query: 193 CHVEGCKRKFVDLSSLKKHTKIHT 216
EGC ++F S LK+H K+H
Sbjct: 37 ---EGCDKRFSLPSRLKRHEKVHA 57
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 110 CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLD---SKPYSCH 166
C KAFK L H H PY+C + C + F ++ + HE+ H K SC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 167 VCGRSF 172
G+++
Sbjct: 69 FVGKTW 74
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG++F N H +HLRIH G KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C+ C KAF+ + L+ H IH G++P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 165 CHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIH 215
C CG+ F SN + N HLR H G KPY C E C+ +SL+ H + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERH 55
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 129 GDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
G +C+Y CG+ FR++ IH R H KPY C C + T HL H
Sbjct: 1 GSSSRECSY--CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 107 CRYCDKAFKTSGDLSKHSAIHNGDRPYKCNY 137
C YC K F+++ L+ H H G++PYKC +
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF 37
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 77 CTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
C+Y C F++ H R H ++P+ C +C+ A L H H
Sbjct: 7 CSY--CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C YC KAF S +L +H IH G++P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F + H RIH G KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFG 106
EK +VC Y C F AE H R+H ++P G
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKPSG 42
Score = 27.3 bits (59), Expect = 7.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PY C+Y CG+ F + H+R H KP
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C+ C KAF+ S L +H ++H+G+RP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C VCG++F ++H H +H G +P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F +TH N H RIH G +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF L++H IH G RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PYKC + CG+ F HT H R H +P
Sbjct: 10 EKPYKC--SECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY+C CG++FI ++ H RIH G KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF L +H IH G++P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PY C CG+ F +Q Q H+R H KP
Sbjct: 10 EKPYNCE--ECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 128 NGDRPYKCNYTSCGRHFRTHTQRQIHERC-HLDSKPYSCH--VCGRSFISNTHKNNHLRI 184
+G C++ CGR F H++ H+ K +SC CG+SF H H+++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 185 HYGLKPYVCHVEG 197
H + Y+C G
Sbjct: 63 HSDTRDYICEFSG 75
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG+ F N+H H R+H G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F + L++H +H G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PYKCN CG+ F ++ H R H KP
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG+ F N+H ++H R+H G KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C K F + L H +H G++P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F TH H R+H G KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C+ C KAF + L +H +H G++P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 160 SKPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
+K + CH CGR F +H N H RIH G KP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
+P+ C+ CG+SFI + H H RIH G KP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+RP C C K+F S L +H IH G++P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY CH CG+ F N+H H IH G KP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F+ + L++H IH G++P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 80 EDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHS-AIHNGD 130
E C F Q + H R H ++P+ C C++AF L +H+ IH+G+
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHT-KIHT 216
+ C VC R+F H H R H KPY C + C R F L +H KIH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHS 55
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 191 YVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTYKHQQSIL 236
+VC V C R F LK+H + HT ++ + C LCN+ + + ++
Sbjct: 3 FVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLI 47
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 140 CGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSF 172
C R F + H R H + KPY C +C R+F
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHF 144
F C C +AF L +H H ++PY C C R F
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAF 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
Q+PF C +C K+F+ G+L H IH G++
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KP+ C CG+SF + + H RIH G K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 104 PFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
P CR C K F TSG+L +H IH+G++
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 162 PYSCHVCGRSFISNTHKNNHLRIHYGLK 189
P C CG+ F ++ + HLRIH G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+RP+ C C KAF +L KH IH G++P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
+PY C VCG++F ++ H +IH G KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
+PY+C V C + F D S+L KH KIHT +
Sbjct: 11 RPYICTV--CGKAFTDRSNLIKHQKIHTGE 38
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF+ +L+ H IH G++P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PYKCN CG+ FR H+ H+ H KP
Sbjct: 10 EKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG++F ++++ H IH G KP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C +CG+SF + + H +IH G KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K+F L H IH G++P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PY+C+ CG+ F +Q +H++ H KP
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG+ F N+H H IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F + L++H IH G++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG+ F N+ ++H R+H G KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C K F + L H +H G++P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++P+KC CG+ F ++Q H+R H KP
Sbjct: 10 EKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C K+F S L+ H IH G++P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG+SF ++ H RIH G KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++P++C CG+ F +Q H+R H KP
Sbjct: 10 EKPFEC--AECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF L+ H AIH G +P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG++F + H IH G KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PY+CN CG+ F + H+ H KP
Sbjct: 10 EKPYECN--QCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG+ F N+H H IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F + L++H IH G++P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F + H RIH G KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF +L++H IH G++P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF + L++H IH G++P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG++F + H RIH G KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PYKCN CG+ F ++ H+R H KP
Sbjct: 10 EKPYKCN--ECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG+ F N++ + H RIH G KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F+ + LS+H IH G++P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PYKCN CG+ FR ++ H+R H KP
Sbjct: 10 EKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 101 VQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C CDK+F+ L+ H IH G++P
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C C +SF + N+H IH G KP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG+ F N+H H IH G KP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F + L +H IH G++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F S ++ H+R H G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+GC C KAF + L H H+G++P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PY C + CG+ F + + IH R H KP
Sbjct: 10 EKPYGC--SECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.079, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F S ++ H+R H G KP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 0.24, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+P+GC C KAF++ L H H G++P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.4 bits (67), Expect = 0.91, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
S+ +G +PY C + CG+ FR+ + IH R H KP
Sbjct: 2 SSGSSGVKPYGC--SECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG+SFI + + H RIH G P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PY+C + CG+ F +Q +H+R H P
Sbjct: 10 EKPYEC--SDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 191 YVCHVEGCKRKFVDLSSLKKHTKIHT 216
YVCH E C R F D L +H KIHT
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 89 QAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGD 130
+A H R+H RPF C YC K +LSKH +GD
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIHYGLKP 190
Y C VCG+ F ++H H R+H G KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2AB7|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 191 YVCHVEGCKRKFVDLSSLKKHTKIHT 216
YVCH E C R F D L +H KIHT
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C VC ++F H H + H G KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C+ C KAF L++H H G++P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF+ L+ H A H+G++P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PYKCN CG+ FR + IH+ H KP
Sbjct: 10 EKPYKCN--ECGKAFRARSSLAIHQATHSGEKP 40
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG++F + + H H G KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C VCG++F + H RIH G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF LS H IH+G +P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+P+ C C KAF L+ H IH G++P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG++F + H IH G KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
+PY CN CG+ F ++ H+ H KP
Sbjct: 11 KPYMCN--ECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C KAF T +L H H G++P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F N+ H R+H G +P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF + ++H +H G RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P C C K F+ S LSKH IH+G++P
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP C+ CG++F ++ + H RIH G KP
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG++F + H R+H G KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+P+ C C KAF + L++H +H G++P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
+PY+CN CG+ F ++ H+R H KP
Sbjct: 11 KPYQCN--ECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 75 HVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKH 123
H+C C F ++ E H R+ + F C+YC F +S L++H
Sbjct: 29 HLCPV--CGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 156 CHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHT 212
CHL C VCG SF S + HLR+ + + + C C F L +H
Sbjct: 28 CHL------CPVCGESFASKGAQERHLRLLHAAQVFPCKY--CPATFYSSPGLTRHI 76
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
S+ +G++PY+C CG+ F +HER H S P S
Sbjct: 2 SSGSSGEKPYQCK--ECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C+ C K+F G L+ H +H G P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG+SF H R+H G P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+ PF C C K F S LSKH IH G+ P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 162 PYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
P+ C+ CG++F + H + H IH G P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
++P+ C C KAF+T +L+ H IH G++
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KPY C+ CG++F + ++ H IH G K
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
QRP+ C C KAFKT L H H G++P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
RPY+C CG+ F+T + H R H KP
Sbjct: 11 RPYEC--IECGKAFKTKSSLICHRRSHTGEKP 40
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
+PY C CG++F + + H R H G KP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C+ C K+F+ + L KH +H+G++P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY+C CG+SF + H R+H G KP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
KPY C CG++FI +H H RIH G
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG+S+ H H R+H G KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C K++ L++H +H G++P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIH 185
KPY C CGRSF T K HL H
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHL-DSKPYS 164
S+ +G +PY CN CG+ F +Q IHER H +S P S
Sbjct: 2 SSGSSGQKPYVCN--ECGKAFGLKSQLIIHERIHTGESGPSS 41
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGD 130
Q+P+ C C KAF L H IH G+
Sbjct: 8 QKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
KPY C+ CG++F + H RIH G
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG++F + N H RIH G KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C KAF L++H IH G++P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C +CG+SF + N H +H KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C K+F L++HS +H ++P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.27, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPYSC+ CG++F + H +H G+KP
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 1.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF L H +H G +P
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
S+ +G++PY CN CG+ F +Q +H+ H KP
Sbjct: 2 SSGSSGEKPYSCN--ECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 103 RPFGCRYCDKAFKTSGDLSKH 123
RP+ C YC+ +FKT G+L+KH
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKH 21
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+GC C K F LS H H G++P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C+ CG++F + + H R H G KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PY CN CG+ F + H+R H KP
Sbjct: 10 EKPYGCN--ECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHL-DSKPYS 164
S+ +G++PY+C T CG+ F +Q IH+R H +S P S
Sbjct: 2 SSGSSGEKPYEC--TDCGKAFGLKSQLIIHQRTHTGESGPSS 41
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F ++ H +IH G KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF +L H IH G++P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG+ F +N+ +H R H G KP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C K F T+ H H+G++P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++P+KC CG+ F T++Q H+R H KP
Sbjct: 10 EKPFKCE--ECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF L++H +H+G++P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C VC ++F + H R+H G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.6 bits (70), Expect = 0.40, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG F+ H H+ IH G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
QR + C+ C K+F+ G L+ H IH G P
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
S+ +G R Y+C CG+ FR +HER H S P S
Sbjct: 2 SSGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
KPY C C ++FI H N H R+H G
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
++P+ C+ C K F G L++H +H G+R
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 160 SKPYSCHVCGRSFISNTHKNNHLR-IHYGLKPYVCHV 195
KPY C CG+ F H N H++ +H +P+ C V
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 101 VQRPFGCRYCDKAFKTSGDLSKH-SAIHNGDRPYKCNYTSCG 141
V +P+ C+ C K F L+ H +H +RP+KC G
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
KPY C CG++FI N+ H R H G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C +CG F +HLRIH G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
KPY C + C +F L +LK H +IHT
Sbjct: 10 KPYPCEI--CGTRFRHLQTLKSHLRIHT 35
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIHYGLKP 190
Y C CG++FI + + H RIH G KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+R + C C KAF LS H IH G++P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K+F+ L+ H IH G++P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C VC +SF + H RIH G KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
++PYKC+ C + FR + +H+R H KP
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KPY C+ CG+ F S ++ H RIH G K
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
S+ +G++PY CN CG+ F + + +H+R H K
Sbjct: 2 SSGSSGEKPYGCN--ECGKDFSSKSYLIVHQRIHTGEK 37
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
++P+GC C K F + L H IH G++
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLR-IHYGLKP 190
KPY C CG++FI NT H R H G KP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 162 PYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
PY CH CG++F +H R H G KP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.4 bits (67), Expect = 0.85, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 188 LKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
+KPYVC C+R+F D +L++H +IHT +
Sbjct: 1 MKPYVC--IHCQRQFADPGALQRHVRIHTGE 29
Score = 27.3 bits (59), Expect = 6.6, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+P+ C +C + F G L +H IH G++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+ PF C C K F +L H IH G+RP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K + + +L H +H G+RP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG+ + S + + H ++H G +P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
F C C KAF LS H IH G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
K Y C+ CG+ F N+ + H +IH G KP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+ C C K F + LS+H IH G++P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
+PYSC VCG+ F H R+H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF +L KH IH +P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
KPY+C C + F S+L KH KIHT+Q
Sbjct: 11 KPYIC--AECGKAFTIRSNLIKHQKIHTKQ 38
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F ++ H +IH KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG+SF N+ H RIH G P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P CR C K+F + L H IH G+ P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIH 185
+P+ C+ CG+ F +H HLR+H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C KAF G L H +H G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG++F H+R+H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
F C C K F S L+ H IH G++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIH 185
KPY C CG+ F+ ++ NH+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++P+ C C K F DL H +H G++P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C CG+ FI H +H G KP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PFGC C+KAF + L H H ++P
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGD 130
++P+ C C KAF T +L H H G+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++PF C C K F L+ H +H G++P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KP+ C CG+ F + N H ++H G KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.9 bits (63), Expect = 2.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIH 127
+RPF CR C AF T + ++H +H
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
KPY C CG++F ++ + H R+H G
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGD 130
++P+ C+ C KAF S LS H +H G+
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
KPYSC VCG F + H+R H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KP+ C C R F + H H R H G K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+PF C+ C + F S L H+ H G++
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 183 RIHYGLKPYVCHVEGCKRKFVDLSSLKKHT-KIHTQQT--FHCNLCN 226
R H G KPY C++ C +F ++K H + HT+ FHC C+
Sbjct: 8 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCD 52
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
KPY C+ CG++F S ++ H R H G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHL-DSKPYS 164
+PY CN CG+ FR+ + IH R H +S P S
Sbjct: 11 KPYVCN--ECGKAFRSKSYLIIHTRTHTGESGPSS 43
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
KPY C C ++F + H R H G+KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+P+GC C K F L H H G +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 103 RPFGC--RYCDKAFKTSGDLSKHSAIHNGDR 131
RPF C YC K F S +L +H H G++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
RP+ C ++ CG+ F + Q H+R H K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
K ++CH++GC + + S L+ H + HT +
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
++PYKC + CG+ F ++ +IH++CH +
Sbjct: 10 EKPYKC--SDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 5.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGL 188
KPY C+ CG++FI + H R H G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHY 186
+PY C+ CG++F ++H HL+ H+
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHF 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+R + C C KAF L H IH G++P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIHYGLKP 190
Y C CG++F + H RIH G KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
++ + CR CD F + L H +H G++P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KPY C CG+ + + + H R+H G K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
+ C+ C K+F + L KH +H+G++P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPY 191
K +C +CG+ F H N H H G KPY
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 8.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNG 129
++P+ C C KAF L H IH G
Sbjct: 8 EKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 183 RIHYGLKPYVC-HVEGC--KRKFVDLSSLKKHTKIHTQQTFHCNLCNKTYKHQQSI 235
R H G KPY C H + +++ +D+ + H F C+ C KT+ + ++
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,764,635
Number of Sequences: 62578
Number of extensions: 315001
Number of successful extensions: 1502
Number of sequences better than 100.0: 180
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 633
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)