Query psy9360
Match_columns 236
No_of_seqs 175 out of 1916
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 17:08:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 100.0 6.2E-32 1.3E-36 198.7 3.5 123 105-233 131-257 (279)
2 KOG2462|consensus 100.0 1.4E-29 3E-34 186.3 5.7 137 71-215 127-266 (279)
3 KOG3623|consensus 99.9 2.9E-24 6.2E-29 176.1 5.7 71 162-234 894-965 (1007)
4 KOG3608|consensus 99.9 9.1E-23 2E-27 154.7 5.4 212 17-235 132-368 (467)
5 KOG3608|consensus 99.8 3.3E-22 7.2E-27 151.7 2.7 190 19-217 177-377 (467)
6 KOG1074|consensus 99.8 6.5E-22 1.4E-26 164.7 3.9 74 161-236 604-685 (958)
7 KOG1074|consensus 99.8 5.3E-21 1.1E-25 159.4 3.5 179 33-217 592-932 (958)
8 KOG3623|consensus 99.8 2E-21 4.3E-26 159.6 0.7 79 133-215 895-973 (1007)
9 KOG3576|consensus 99.7 3.3E-17 7.2E-22 115.6 2.4 110 104-217 117-237 (267)
10 KOG3576|consensus 99.6 6E-16 1.3E-20 109.3 3.2 116 70-189 113-239 (267)
11 PLN03086 PRLI-interacting fact 99.3 6.6E-12 1.4E-16 104.2 8.3 136 74-232 407-554 (567)
12 PLN03086 PRLI-interacting fact 99.2 2E-11 4.2E-16 101.4 6.9 147 47-216 408-564 (567)
13 PHA00733 hypothetical protein 99.2 2.7E-11 5.8E-16 82.5 4.1 82 130-217 38-124 (128)
14 PHA02768 hypothetical protein; 99.2 2E-11 4.2E-16 68.7 2.4 43 190-235 5-47 (55)
15 PHA00733 hypothetical protein 99.1 1.7E-10 3.7E-15 78.6 4.6 95 89-187 25-124 (128)
16 PHA02768 hypothetical protein; 99.0 3.3E-10 7.1E-15 63.8 1.9 44 162-209 5-48 (55)
17 PF13465 zf-H2C2_2: Zinc-finge 98.9 1.4E-09 3.1E-14 52.4 1.9 24 178-203 2-25 (26)
18 PF13465 zf-H2C2_2: Zinc-finge 98.7 1.9E-08 4E-13 48.4 2.7 25 207-231 1-26 (26)
19 KOG3993|consensus 98.7 3E-09 6.5E-14 83.7 -0.4 51 164-216 432-482 (500)
20 KOG3993|consensus 98.5 4.8E-08 1E-12 77.1 2.6 135 46-184 267-480 (500)
21 PHA00616 hypothetical protein 98.5 5E-08 1.1E-12 52.3 1.5 33 162-194 1-33 (44)
22 PHA00732 hypothetical protein 98.3 5.6E-07 1.2E-11 55.7 2.6 21 163-183 2-22 (79)
23 PHA00616 hypothetical protein 98.2 5E-07 1.1E-11 48.5 1.4 33 190-224 1-34 (44)
24 PHA00732 hypothetical protein 98.2 1E-06 2.2E-11 54.5 2.4 39 190-232 1-40 (79)
25 PF05605 zf-Di19: Drought indu 98.0 1E-05 2.2E-10 46.5 4.0 49 163-216 3-53 (54)
26 COG5189 SFP1 Putative transcri 98.0 3.9E-06 8.5E-11 64.2 2.3 49 187-235 346-414 (423)
27 PF00096 zf-C2H2: Zinc finger, 98.0 5.5E-06 1.2E-10 38.5 1.9 22 191-214 1-22 (23)
28 PF00096 zf-C2H2: Zinc finger, 97.9 1.3E-05 2.7E-10 37.3 2.2 23 163-185 1-23 (23)
29 COG5189 SFP1 Putative transcri 97.7 1.1E-05 2.4E-10 61.8 1.1 72 130-213 347-419 (423)
30 PF05605 zf-Di19: Drought indu 97.7 7.8E-05 1.7E-09 42.8 4.3 50 132-186 2-53 (54)
31 PF13894 zf-C2H2_4: C2H2-type 97.7 3.9E-05 8.6E-10 35.8 2.2 23 191-215 1-23 (24)
32 PF13912 zf-C2H2_6: C2H2-type 97.7 3.5E-05 7.5E-10 37.3 2.0 25 190-216 1-25 (27)
33 PF13912 zf-C2H2_6: C2H2-type 97.6 2.5E-05 5.4E-10 37.8 1.3 25 162-186 1-25 (27)
34 PF13894 zf-C2H2_4: C2H2-type 97.6 5.6E-05 1.2E-09 35.3 2.3 24 163-186 1-24 (24)
35 PF12756 zf-C2H2_2: C2H2 type 97.5 7.2E-05 1.6E-09 48.9 2.4 22 163-184 51-72 (100)
36 PF12756 zf-C2H2_2: C2H2 type 97.5 8.9E-05 1.9E-09 48.4 2.6 72 135-215 2-73 (100)
37 PF09237 GAGA: GAGA factor; I 97.3 0.0003 6.6E-09 38.6 2.8 29 161-189 23-51 (54)
38 PF09237 GAGA: GAGA factor; I 97.1 0.00056 1.2E-08 37.6 2.7 32 186-219 20-52 (54)
39 KOG4173|consensus 97.0 0.00052 1.1E-08 49.5 2.4 84 130-216 77-170 (253)
40 smart00355 ZnF_C2H2 zinc finge 96.9 0.00077 1.7E-08 31.8 2.2 18 198-215 6-23 (26)
41 PRK04860 hypothetical protein; 96.8 0.001 2.3E-08 47.2 2.5 37 190-232 119-156 (160)
42 smart00355 ZnF_C2H2 zinc finge 96.7 0.0015 3.2E-08 30.7 2.0 24 163-186 1-24 (26)
43 PF12874 zf-met: Zinc-finger o 96.6 0.0013 2.7E-08 31.0 1.3 22 191-214 1-22 (25)
44 PF12874 zf-met: Zinc-finger o 96.6 0.0019 4.1E-08 30.4 1.8 22 163-184 1-22 (25)
45 COG5048 FOG: Zn-finger [Genera 96.6 0.00072 1.6E-08 56.3 0.5 151 74-226 289-453 (467)
46 PF13909 zf-H2C2_5: C2H2-type 96.3 0.0032 7E-08 29.3 1.8 17 198-215 6-22 (24)
47 PRK04860 hypothetical protein; 96.2 0.0032 7E-08 44.7 2.3 38 162-205 119-156 (160)
48 PF12171 zf-C2H2_jaz: Zinc-fin 96.0 0.0018 4E-08 31.1 -0.0 21 163-183 2-22 (27)
49 PF13909 zf-H2C2_5: C2H2-type 95.8 0.0082 1.8E-07 27.8 2.0 23 163-186 1-23 (24)
50 COG5236 Uncharacterized conser 95.1 0.042 9E-07 43.3 4.5 131 74-216 151-305 (493)
51 PF12171 zf-C2H2_jaz: Zinc-fin 95.0 0.0061 1.3E-07 29.3 -0.2 22 191-214 2-23 (27)
52 COG5048 FOG: Zn-finger [Genera 94.9 0.0071 1.5E-07 50.3 0.0 161 46-209 289-462 (467)
53 KOG2231|consensus 94.3 0.062 1.3E-06 46.6 4.2 125 75-213 100-260 (669)
54 KOG2231|consensus 94.2 0.13 2.9E-06 44.6 5.9 22 164-185 184-205 (669)
55 COG5236 Uncharacterized conser 94.1 0.03 6.6E-07 44.0 1.8 90 133-226 152-254 (493)
56 PF13913 zf-C2HC_2: zinc-finge 94.1 0.045 9.7E-07 25.7 1.7 15 198-213 8-22 (25)
57 KOG1146|consensus 93.3 0.034 7.3E-07 51.3 1.0 73 160-234 516-633 (1406)
58 smart00451 ZnF_U1 U1-like zinc 93.3 0.065 1.4E-06 27.3 1.7 22 162-183 3-24 (35)
59 smart00451 ZnF_U1 U1-like zinc 91.8 0.14 3.1E-06 25.9 1.8 23 190-214 3-25 (35)
60 KOG2893|consensus 91.4 0.059 1.3E-06 40.2 0.1 41 165-211 13-53 (341)
61 cd00350 rubredoxin_like Rubred 91.3 0.14 3E-06 25.8 1.3 11 163-173 2-12 (33)
62 PF12013 DUF3505: Protein of u 90.7 0.65 1.4E-05 30.8 4.6 27 191-217 81-109 (109)
63 KOG2785|consensus 90.7 0.83 1.8E-05 36.8 5.7 52 162-215 166-243 (390)
64 KOG1146|consensus 89.1 0.096 2.1E-06 48.5 -0.5 115 80-214 1232-1350(1406)
65 COG4049 Uncharacterized protei 88.5 0.23 4.9E-06 28.0 0.8 21 162-182 17-37 (65)
66 PF05290 Baculo_IE-1: Baculovi 87.3 0.36 7.7E-06 32.7 1.4 59 158-234 76-136 (140)
67 PF13719 zinc_ribbon_5: zinc-r 87.3 0.51 1.1E-05 24.5 1.7 33 134-173 4-36 (37)
68 TIGR00622 ssl1 transcription f 85.8 1.1 2.4E-05 29.7 3.1 20 103-122 14-33 (112)
69 PF13717 zinc_ribbon_4: zinc-r 85.2 0.78 1.7E-05 23.6 1.8 29 139-172 7-35 (36)
70 cd00729 rubredoxin_SM Rubredox 84.9 0.6 1.3E-05 23.7 1.2 12 163-174 3-14 (34)
71 PF12013 DUF3505: Protein of u 84.6 1.8 3.9E-05 28.7 3.8 25 163-187 81-109 (109)
72 KOG2186|consensus 84.3 0.58 1.3E-05 35.5 1.4 42 80-124 7-48 (276)
73 COG4049 Uncharacterized protei 83.4 0.59 1.3E-05 26.3 0.9 30 186-217 13-42 (65)
74 KOG2893|consensus 83.1 0.52 1.1E-05 35.3 0.7 47 75-127 11-58 (341)
75 KOG2482|consensus 83.0 3.8 8.1E-05 32.7 5.3 51 163-215 280-357 (423)
76 KOG2785|consensus 82.7 5 0.00011 32.6 6.0 52 131-184 165-242 (390)
77 KOG4173|consensus 82.1 0.43 9.3E-06 34.9 0.0 82 74-158 79-171 (253)
78 KOG2482|consensus 81.4 1.5 3.1E-05 34.9 2.6 107 75-185 145-357 (423)
79 PF09538 FYDLN_acid: Protein o 81.2 1.3 2.8E-05 29.3 2.0 14 161-174 25-38 (108)
80 KOG2186|consensus 80.5 1.5 3.2E-05 33.3 2.4 46 133-183 4-49 (276)
81 PF09538 FYDLN_acid: Protein o 80.2 1.3 2.8E-05 29.3 1.7 30 163-205 10-39 (108)
82 TIGR02098 MJ0042_CXXC MJ0042 f 79.7 1.5 3.3E-05 22.6 1.6 10 163-172 26-35 (38)
83 PF10571 UPF0547: Uncharacteri 79.4 1.2 2.6E-05 21.1 1.0 10 164-173 16-25 (26)
84 COG2888 Predicted Zn-ribbon RN 77.3 2 4.4E-05 24.7 1.7 8 162-169 50-57 (61)
85 KOG4124|consensus 73.9 1.1 2.5E-05 35.6 0.2 48 188-235 347-414 (442)
86 TIGR00622 ssl1 transcription f 73.1 8.1 0.00017 25.7 4.0 86 130-226 13-110 (112)
87 smart00659 RPOLCX RNA polymera 70.1 3.4 7.3E-05 22.4 1.4 11 163-173 3-13 (44)
88 TIGR00373 conserved hypothetic 69.6 5.2 0.00011 28.5 2.7 35 158-203 105-139 (158)
89 smart00734 ZnF_Rad18 Rad18-lik 68.6 4.4 9.4E-05 19.1 1.5 19 164-183 3-21 (26)
90 PRK00398 rpoP DNA-directed RNA 68.3 4.4 9.5E-05 22.0 1.7 12 163-174 4-15 (46)
91 PF02176 zf-TRAF: TRAF-type zi 68.3 2.9 6.4E-05 24.0 1.1 41 132-173 9-53 (60)
92 PRK14890 putative Zn-ribbon RN 68.2 4.2 9.1E-05 23.5 1.6 8 162-169 48-55 (59)
93 smart00614 ZnF_BED BED zinc fi 67.5 5.3 0.00011 22.1 2.0 21 163-183 19-44 (50)
94 KOG4377|consensus 67.2 3.1 6.7E-05 34.0 1.3 28 190-217 401-428 (480)
95 COG1592 Rubrerythrin [Energy p 67.0 3.9 8.3E-05 29.3 1.6 23 162-199 134-156 (166)
96 PF09986 DUF2225: Uncharacteri 66.0 2.3 4.9E-05 32.1 0.3 22 103-124 4-25 (214)
97 TIGR00373 conserved hypothetic 65.6 7.8 0.00017 27.6 3.0 37 68-115 103-139 (158)
98 TIGR02300 FYDLN_acid conserved 63.4 5.6 0.00012 27.0 1.8 15 161-175 25-39 (129)
99 PHA00626 hypothetical protein 62.3 3.6 7.9E-05 23.3 0.6 14 218-231 22-35 (59)
100 PF09986 DUF2225: Uncharacteri 61.7 1.8 3.9E-05 32.6 -0.9 18 161-178 4-21 (214)
101 PRK06266 transcription initiat 61.1 8.9 0.00019 28.0 2.6 34 160-204 115-148 (178)
102 PRK06266 transcription initiat 60.3 9.9 0.00022 27.7 2.8 36 70-116 113-148 (178)
103 smart00531 TFIIE Transcription 60.2 17 0.00037 25.5 3.9 39 70-114 95-133 (147)
104 PF02892 zf-BED: BED zinc fing 59.9 9.9 0.00022 20.3 2.1 11 163-173 17-27 (45)
105 PF07800 DUF1644: Protein of u 59.6 40 0.00086 24.0 5.4 53 162-217 80-133 (162)
106 PF07754 DUF1610: Domain of un 59.1 4.1 9E-05 18.8 0.4 9 218-226 15-23 (24)
107 smart00834 CxxC_CXXC_SSSS Puta 55.8 4.4 9.6E-05 21.1 0.3 11 220-230 6-16 (41)
108 KOG4124|consensus 55.6 2.7 5.8E-05 33.6 -0.8 29 65-96 204-232 (442)
109 PF09723 Zn-ribbon_8: Zinc rib 55.2 4.3 9.3E-05 21.6 0.1 12 220-231 6-17 (42)
110 PF14787 zf-CCHC_5: GAG-polypr 54.0 7.9 0.00017 19.8 1.0 14 221-234 4-17 (36)
111 PF06524 NOA36: NOA36 protein; 52.4 13 0.00028 28.6 2.3 70 158-231 138-221 (314)
112 PF03604 DNA_RNApol_7kD: DNA d 49.7 9.6 0.00021 19.0 0.9 7 163-169 18-24 (32)
113 PRK09678 DNA-binding transcrip 47.3 8 0.00017 23.5 0.4 7 197-203 34-40 (72)
114 PF05443 ROS_MUCR: ROS/MUCR tr 46.3 14 0.0003 25.5 1.5 22 191-217 73-94 (132)
115 PF01363 FYVE: FYVE zinc finge 45.7 8.1 0.00018 22.9 0.3 9 164-172 11-19 (69)
116 cd00065 FYVE FYVE domain; Zinc 43.9 15 0.00032 20.7 1.2 11 164-174 4-14 (57)
117 smart00154 ZnF_AN1 AN1-like Zi 42.7 11 0.00024 19.7 0.5 12 219-230 12-23 (39)
118 PF13451 zf-trcl: Probable zin 42.2 7.3 0.00016 21.6 -0.2 15 218-232 3-17 (49)
119 KOG2636|consensus 41.3 22 0.00047 29.7 2.2 29 155-183 394-423 (497)
120 PF14353 CpXC: CpXC protein 41.1 19 0.00042 24.5 1.7 11 163-173 2-12 (128)
121 COG1198 PriA Primosomal protei 41.1 10 0.00023 34.1 0.4 49 163-228 436-484 (730)
122 PRK00464 nrdR transcriptional 39.8 4.8 0.0001 28.5 -1.5 13 163-175 29-41 (154)
123 PF01428 zf-AN1: AN1-like Zinc 39.6 8.5 0.00018 20.6 -0.2 11 219-229 13-23 (43)
124 PF11789 zf-Nse: Zinc-finger o 39.2 17 0.00037 20.9 0.9 34 161-198 23-56 (57)
125 PF04959 ARS2: Arsenite-resist 38.1 28 0.0006 26.3 2.2 25 190-216 77-101 (214)
126 KOG4377|consensus 37.7 15 0.00033 30.2 0.8 19 168-186 409-427 (480)
127 PF08274 PhnA_Zn_Ribbon: PhnA 37.3 16 0.00036 17.9 0.6 7 163-169 20-26 (30)
128 COG1773 Rubredoxin [Energy pro 37.0 16 0.00035 20.8 0.6 14 162-175 3-16 (55)
129 COG4957 Predicted transcriptio 36.8 20 0.00043 24.6 1.1 25 163-190 77-101 (148)
130 KOG3408|consensus 36.7 18 0.0004 24.3 0.9 24 161-184 56-79 (129)
131 cd00924 Cyt_c_Oxidase_Vb Cytoc 36.5 18 0.0004 23.4 0.9 18 156-174 74-91 (97)
132 COG3357 Predicted transcriptio 36.0 19 0.00042 22.8 0.9 12 163-174 59-70 (97)
133 smart00064 FYVE Protein presen 35.8 23 0.00049 20.9 1.2 12 163-174 11-22 (68)
134 COG1996 RPC10 DNA-directed RNA 35.6 24 0.00052 19.6 1.1 10 163-172 7-16 (49)
135 KOG4167|consensus 35.4 9.5 0.00021 33.9 -0.7 24 163-186 793-816 (907)
136 PF11931 DUF3449: Domain of un 35.4 12 0.00027 27.6 0.0 29 155-183 94-123 (196)
137 PF13878 zf-C2H2_3: zinc-finge 34.9 43 0.00092 17.7 2.0 23 163-185 14-38 (41)
138 PLN02294 cytochrome c oxidase 34.9 20 0.00044 25.7 1.0 16 160-175 139-154 (174)
139 KOG2593|consensus 34.0 44 0.00095 27.9 2.8 51 59-114 113-163 (436)
140 KOG2807|consensus 33.6 54 0.0012 26.3 3.2 23 191-215 346-368 (378)
141 PF10013 DUF2256: Uncharacteri 33.0 16 0.00035 19.5 0.2 10 222-231 11-20 (42)
142 COG3677 Transposase and inacti 32.5 21 0.00047 24.4 0.8 15 218-232 52-66 (129)
143 PF08790 zf-LYAR: LYAR-type C2 32.3 13 0.00028 17.9 -0.2 8 165-172 3-10 (28)
144 PF04959 ARS2: Arsenite-resist 31.6 30 0.00065 26.1 1.5 30 71-102 74-103 (214)
145 KOG2593|consensus 31.6 54 0.0012 27.5 3.0 37 160-201 126-162 (436)
146 COG5151 SSL1 RNA polymerase II 31.2 25 0.00054 27.9 1.0 24 190-215 388-411 (421)
147 PF12907 zf-met2: Zinc-binding 31.1 22 0.00047 18.8 0.5 21 163-183 2-25 (40)
148 KOG0717|consensus 30.6 30 0.00066 29.2 1.4 21 163-183 293-313 (508)
149 PF09845 DUF2072: Zn-ribbon co 29.6 27 0.00058 23.9 0.8 15 162-176 1-15 (131)
150 PF01286 XPA_N: XPA protein N- 29.0 22 0.00047 18.1 0.2 12 221-232 5-16 (34)
151 PF08209 Sgf11: Sgf11 (transcr 28.6 60 0.0013 16.3 1.8 22 162-184 4-25 (33)
152 PF06397 Desulfoferrod_N: Desu 28.5 21 0.00045 18.4 0.1 11 218-228 5-15 (36)
153 PF14446 Prok-RING_1: Prokaryo 27.2 26 0.00056 19.9 0.4 27 191-230 6-32 (54)
154 PF12760 Zn_Tnp_IS1595: Transp 26.9 49 0.0011 17.8 1.5 8 163-170 19-26 (46)
155 PRK04023 DNA polymerase II lar 26.8 71 0.0015 30.1 3.2 9 219-227 663-671 (1121)
156 PF04423 Rad50_zn_hook: Rad50 26.7 52 0.0011 18.4 1.6 11 164-174 22-32 (54)
157 PRK14873 primosome assembly pr 26.1 20 0.00043 32.1 -0.3 48 163-228 384-431 (665)
158 COG1997 RPL43A Ribosomal prote 25.8 45 0.00098 21.0 1.3 8 163-170 36-43 (89)
159 COG3091 SprT Zn-dependent meta 25.7 35 0.00077 24.0 0.9 12 162-174 117-128 (156)
160 COG5188 PRP9 Splicing factor 3 25.7 51 0.0011 26.8 1.9 30 155-184 367-397 (470)
161 PF15269 zf-C2H2_7: Zinc-finge 25.6 80 0.0017 17.0 2.0 21 75-97 21-41 (54)
162 KOG3408|consensus 25.0 48 0.001 22.4 1.4 26 71-98 54-79 (129)
163 TIGR00595 priA primosomal prot 23.0 29 0.00064 30.0 0.1 47 164-227 215-261 (505)
164 KOG2071|consensus 22.6 58 0.0013 28.5 1.8 29 187-217 415-443 (579)
165 PF03811 Zn_Tnp_IS1: InsA N-te 22.4 16 0.00034 18.8 -1.0 18 208-225 17-35 (36)
166 PF15135 UPF0515: Uncharacteri 22.3 78 0.0017 24.4 2.2 36 105-147 133-168 (278)
167 KOG0717|consensus 22.2 56 0.0012 27.7 1.5 22 191-214 293-314 (508)
168 COG3364 Zn-ribbon containing p 21.9 59 0.0013 21.2 1.3 13 162-174 2-14 (112)
169 COG1675 TFA1 Transcription ini 20.9 1.4E+02 0.003 21.9 3.1 16 160-175 111-126 (176)
170 PRK03824 hypA hydrogenase nick 20.7 37 0.00081 23.5 0.3 11 163-173 71-81 (135)
171 PF01096 TFIIS_C: Transcriptio 20.6 28 0.00062 18.1 -0.3 8 220-227 29-36 (39)
172 PF04780 DUF629: Protein of un 20.6 75 0.0016 27.1 2.0 28 160-187 55-83 (466)
173 PF00301 Rubredoxin: Rubredoxi 20.5 67 0.0014 17.6 1.2 21 8-28 23-43 (47)
174 KOG4167|consensus 20.3 22 0.00047 31.8 -1.1 26 73-100 791-816 (907)
175 COG4888 Uncharacterized Zn rib 20.2 23 0.00049 23.0 -0.8 14 161-174 21-34 (104)
176 PF04780 DUF629: Protein of un 20.2 80 0.0017 27.0 2.1 25 190-216 57-81 (466)
177 COG5216 Uncharacterized conser 20.1 69 0.0015 18.4 1.2 31 133-171 23-53 (67)
178 smart00440 ZnF_C2C2 C2C2 Zinc 20.0 44 0.00095 17.5 0.4 10 220-229 29-38 (40)
No 1
>KOG2462|consensus
Probab=99.97 E-value=6.2e-32 Score=198.72 Aligned_cols=123 Identities=30% Similarity=0.751 Sum_probs=62.5
Q ss_pred cccccCccccCCchhHHhhhhhhcC---CCCcccccCcccccccchhhHHHhHhhcCCCCCeecccccccccCchHHHhH
Q psy9360 105 FGCRYCDKAFKTSGDLSKHSAIHNG---DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNH 181 (236)
Q Consensus 105 ~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H 181 (236)
|.|..|++.+.+.++|.+|..+|.. .+.+.|+ .|++.|.+..+|..|+++|. .+++|.+||+.|.....|..|
T Consensus 131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~--~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGH 206 (279)
T KOG2462|consen 131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCK--YCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGH 206 (279)
T ss_pred eeccccccccccccccchhhcccccccccccccCC--CCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcc
Confidence 4455555555555555555444432 3344454 35555555555555555554 335555555555555555555
Q ss_pred HHHhcCCCCeeccccccccccCChhhHHHHHHhhcC-CcccCCccccccCccC
Q psy9360 182 LRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ-QTFHCNLCNKTYKHQQ 233 (236)
Q Consensus 182 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~ 233 (236)
+++|||||||.|+. |++.|.++++|+.||++|.+ |+|+|..|+|.|...+
T Consensus 207 iRTHTGEKPF~C~h--C~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~S 257 (279)
T KOG2462|consen 207 IRTHTGEKPFSCPH--CGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKS 257 (279)
T ss_pred cccccCCCCccCCc--ccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHH
Confidence 55555555555532 55555555555555555555 5555555555554443
No 2
>KOG2462|consensus
Probab=99.96 E-value=1.4e-29 Score=186.34 Aligned_cols=137 Identities=29% Similarity=0.627 Sum_probs=127.1
Q ss_pred cCCceeecCCCCCcccCChHHHHHHHhhcCC---CCCcccccCccccCCchhHHhhhhhhcCCCCcccccCcccccccch
Q psy9360 71 KEKLHVCTYEDCNSVFQTQAEWEEHARMHAV---QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTH 147 (236)
Q Consensus 71 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 147 (236)
....|.| ..|++.+.+.++|.+|.++|-. .+.+.|..|++.|.+...|..|+++|. .+.+|. .||+.|...
T Consensus 127 ~~~r~~c--~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~--iCGKaFSRP 200 (279)
T KOG2462|consen 127 KHPRYKC--PECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECG--ICGKAFSRP 200 (279)
T ss_pred cCCceec--cccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccc--cccccccch
Confidence 3446888 9999999999999999998853 677999999999999999999999996 678899 599999999
Q ss_pred hhHHHhHhhcCCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhh
Q psy9360 148 TQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIH 215 (236)
Q Consensus 148 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h 215 (236)
+.|+.|+++|+|+|||.|+.|++.|.+.++|+.|+.+|.+.|+|+|.. |+|.|...+.|.+|...-
T Consensus 201 WLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~--C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 201 WLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPR--CGKSFALKSYLNKHSESA 266 (279)
T ss_pred HHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcc--hhhHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999966 999999999999998753
No 3
>KOG3623|consensus
Probab=99.90 E-value=2.9e-24 Score=176.08 Aligned_cols=71 Identities=31% Similarity=0.770 Sum_probs=68.0
Q ss_pred CeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhcC-CcccCCccccccCccCC
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ-QTFHCNLCNKTYKHQQS 234 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~~~ 234 (236)
.|.|..|.++|...++|.+|.-.|+|.+||+|.+ |.|.|..+-.|..|+|.|.| |||+|+.|+|+|+...+
T Consensus 894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~i--CkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGS 965 (1007)
T KOG3623|consen 894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCII--CKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGS 965 (1007)
T ss_pred cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccch--hhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccc
Confidence 3999999999999999999999999999999977 99999999999999999999 99999999999998654
No 4
>KOG3608|consensus
Probab=99.87 E-value=9.1e-23 Score=154.68 Aligned_cols=212 Identities=21% Similarity=0.382 Sum_probs=169.5
Q ss_pred CCccccc--CCcCCCccCCCCCCCcccccch-h-------------hHH--hhhhhHHHHhhhhhhhhhhhccCCceeec
Q psy9360 17 GGDEVCW--ESTNSGWSNNGFNQNTRTASND-I-------------YAE--HLQLSEEIMKKSLQEDEKIFEKEKLHVCT 78 (236)
Q Consensus 17 ~~~~~C~--~c~~~~~~~~~~~~h~~~~~~~-~-------------~~~--~~~~~~~~~~~~~~~h~~~~~~~~~~~C~ 78 (236)
++-|.|. .|+..|.+...+..|...+.-- . ..| ..|-..+..+..|.+|.+.|.+++...|
T Consensus 132 g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvAC- 210 (467)
T KOG3608|consen 132 GQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVAC- 210 (467)
T ss_pred hhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEec-
Confidence 4455564 7888888877776666554321 0 111 1244557788888999999999999989
Q ss_pred CCCCCcccCChHHHHHHHhhc--CCCCCcccccCccccCCchhHHhhhhhhcCCCCcccccCcccccccchhhHHHhHh-
Q psy9360 79 YEDCNSVFQTQAEWEEHARMH--AVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHER- 155 (236)
Q Consensus 79 ~~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~- 155 (236)
+.||.-|.+...|..|++.. ....+|.|..|.+.|.++..|..|++.| ...|.|++ |.......+.|..|++
T Consensus 211 -p~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rH--vn~ykCpl--Cdmtc~~~ssL~~H~r~ 285 (467)
T KOG3608|consen 211 -PHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRH--VNCYKCPL--CDMTCSSASSLTTHIRY 285 (467)
T ss_pred -chHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHh--hhcccccc--cccCCCChHHHHHHHHh
Confidence 88999999999998887643 3466899999999999999999998888 45688994 9999999999999988
Q ss_pred hcCCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhc-C---CcccCCccccccCc
Q psy9360 156 CHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-Q---QTFHCNLCNKTYKH 231 (236)
Q Consensus 156 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-~---~~~~C~~C~~~f~~ 231 (236)
.|...+|++|..|.+.|...+.|..|..+|. +-.|.|..+.|..+|.+..+|++|++.++ | -+|.|..|++.|.+
T Consensus 286 rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~ 364 (467)
T KOG3608|consen 286 RHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTS 364 (467)
T ss_pred hhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhcc
Confidence 4677899999999999999999999999887 67799977789999999999999998665 4 56999999999988
Q ss_pred cCCC
Q psy9360 232 QQSI 235 (236)
Q Consensus 232 ~~~L 235 (236)
..+|
T Consensus 365 G~~L 368 (467)
T KOG3608|consen 365 GKSL 368 (467)
T ss_pred chhH
Confidence 7655
No 5
>KOG3608|consensus
Probab=99.85 E-value=3.3e-22 Score=151.66 Aligned_cols=190 Identities=23% Similarity=0.370 Sum_probs=170.1
Q ss_pred ccccc--CCcCCCccCCCCCCCcccccch-hhHHhhhhhHHHHhhhhhhhhhhhc--cCCceeecCCCCCcccCChHHHH
Q psy9360 19 DEVCW--ESTNSGWSNNGFNQNTRTASND-IYAEHLQLSEEIMKKSLQEDEKIFE--KEKLHVCTYEDCNSVFQTQAEWE 93 (236)
Q Consensus 19 ~~~C~--~c~~~~~~~~~~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~~C~~~~C~~~f~~~~~l~ 93 (236)
-+.|. .|.+.+.+...|..|.+.++++ ..+|..|+..|..+..+..|.+..+ ...+|.| ..|.+.|.+...|.
T Consensus 177 v~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC--~~C~KrFaTeklL~ 254 (467)
T KOG3608|consen 177 VTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQC--AQCFKRFATEKLLK 254 (467)
T ss_pred eeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHH--HHHHHHHhHHHHHH
Confidence 45554 7889999999999999999887 7889999999999999999977654 4578999 99999999999999
Q ss_pred HHHhhcCCCCCcccccCccccCCchhHHhhhhh-hcCCCCcccccCcccccccchhhHHHhHhhcCCCCCeeccc--ccc
Q psy9360 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAI-HNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGR 170 (236)
Q Consensus 94 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~ 170 (236)
.|+..|. ..|+|+.|+.+....+.|..|++. |...+||+|. .|.+.+.....|.+|..+|. +-.|.|.. |..
T Consensus 255 ~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd--~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~ 329 (467)
T KOG3608|consen 255 SHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCD--ECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHY 329 (467)
T ss_pred HHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCCcccc--chhhhhccHHHHHHHHHhcc-ccceecCCCCCcH
Confidence 9999886 459999999999999999999886 7789999999 79999999999999999998 56799999 999
Q ss_pred cccCchHHHhHHHHhc-CC--CCeeccccccccccCChhhHHHHHHhhcC
Q psy9360 171 SFISNTHKNNHLRIHY-GL--KPYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 171 ~f~~~~~l~~H~~~h~-~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
+|.....+++|++.++ |. -+|.|.+ |.+.|.+..+|.+|++..++
T Consensus 330 s~r~~~q~~~H~~evhEg~np~~Y~CH~--Cdr~ft~G~~L~~HL~kkH~ 377 (467)
T KOG3608|consen 330 SVRTYTQMRRHFLEVHEGNNPILYACHC--CDRFFTSGKSLSAHLMKKHG 377 (467)
T ss_pred HHHHHHHHHHHHHHhccCCCCCceeeec--chhhhccchhHHHHHHHhhc
Confidence 9999999999998776 44 4699998 99999999999999987654
No 6
>KOG1074|consensus
Probab=99.84 E-value=6.5e-22 Score=164.71 Aligned_cols=74 Identities=28% Similarity=0.719 Sum_probs=67.1
Q ss_pred CCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhcCC-----cccCC---ccccccCcc
Q psy9360 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ-----TFHCN---LCNKTYKHQ 232 (236)
Q Consensus 161 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----~~~C~---~C~~~f~~~ 232 (236)
.|-.|.+|.++..=.++|+.|+++|+||+||+|.| ||+.|..+.+|+.|+-+|..+ ++.|+ +|-+.|...
T Consensus 604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKi--CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~ 681 (958)
T KOG1074|consen 604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKI--CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNA 681 (958)
T ss_pred CccceeeeeecccchhhhhhhhhcccCcCcccccc--ccchhccccchhhcccccccCccccccccCCchhhhccccccc
Confidence 34789999999999999999999999999999988 999999999999999999753 48999 999999988
Q ss_pred CCCC
Q psy9360 233 QSIL 236 (236)
Q Consensus 233 ~~L~ 236 (236)
..|+
T Consensus 682 V~lp 685 (958)
T KOG1074|consen 682 VTLP 685 (958)
T ss_pred cccc
Confidence 7663
No 7
>KOG1074|consensus
Probab=99.82 E-value=5.3e-21 Score=159.37 Aligned_cols=179 Identities=26% Similarity=0.482 Sum_probs=149.4
Q ss_pred CCCCCCcccccchhhHHhhhhhHHHHhhhhhhhhhhhccCCceeecCCCCCcccCChHHHHHHHhhcCCC----CCcccc
Q psy9360 33 NGFNQNTRTASNDIYAEHLQLSEEIMKKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQ----RPFGCR 108 (236)
Q Consensus 33 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~ 108 (236)
..+.........+..+|.+|.....-+..|+.|.++|+++++|+| ++||+.|.++.+|+.|+.+|... .++.|+
T Consensus 592 ~slv~~~~~~~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkC--KiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP 669 (958)
T KOG1074|consen 592 TSLVENSENKRTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKC--KICGRAFTTKGNLKAHMSVHKAKPPARVQFSCP 669 (958)
T ss_pred cccccccccccCCccceeeeeecccchhhhhhhhhcccCcCcccc--ccccchhccccchhhcccccccCccccccccCC
Confidence 345566666667788899999999999999999999999999999 99999999999999999888543 347899
Q ss_pred ---cCccccCCchhHHhhhhhhcCC-CC------------cccccCcccccccchhhHHHhHhhcCC-------------
Q psy9360 109 ---YCDKAFKTSGDLSKHSAIHNGD-RP------------YKCNYTSCGRHFRTHTQRQIHERCHLD------------- 159 (236)
Q Consensus 109 ---~C~~~f~~~~~l~~H~~~h~~~-~~------------~~C~~~~C~~~f~~~~~l~~H~~~h~~------------- 159 (236)
+|.+.|...-.|..|+++|.+. .+ -.|. .|.+.|.....+..++..|.+
T Consensus 670 ~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~--~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t 747 (958)
T KOG1074|consen 670 STFICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCS--SCQKTFSDARSFSQQISEQPSPESEPDEQMDERT 747 (958)
T ss_pred chhhhcccccccccccceEEeecCCCCCCCcccccccchhcccc--hhhhcccccccchhhhhccCCcccCCcccccccc
Confidence 9999999999999999998732 11 3466 477777666666666665522
Q ss_pred --------------------------------------------------------------------------------
Q psy9360 160 -------------------------------------------------------------------------------- 159 (236)
Q Consensus 160 -------------------------------------------------------------------------------- 159 (236)
T Consensus 748 ~t~~~~~tp~~~e~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~p 827 (958)
T KOG1074|consen 748 ETEELDVTPPPPENSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDP 827 (958)
T ss_pred cccccccCCCccccccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCc
Confidence
Q ss_pred -------------------------------------------------CCCeecccccccccCchHHHhHHHHhcCCCC
Q psy9360 160 -------------------------------------------------SKPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190 (236)
Q Consensus 160 -------------------------------------------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 190 (236)
.....|.+||+.|.+.++|..|+++|+++||
T Consensus 828 vl~~~~~~~l~eg~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KP 907 (958)
T KOG1074|consen 828 VLWNQETSMLNEGLATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKP 907 (958)
T ss_pred hhhcccccccccccccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCC
Confidence 0116799999999999999999999999999
Q ss_pred eeccccccccccCChhhHHHHHHhhcC
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
|.|.+ |++.|..+.+|+.||.+|..
T Consensus 908 F~C~f--C~~aFttrgnLKvHMgtH~w 932 (958)
T KOG1074|consen 908 FFCHF--CEEAFTTRGNLKVHMGTHMW 932 (958)
T ss_pred ccchh--hhhhhhhhhhhhhhhccccc
Confidence 99998 99999999999999999986
No 8
>KOG3623|consensus
Probab=99.81 E-value=2e-21 Score=159.63 Aligned_cols=79 Identities=29% Similarity=0.742 Sum_probs=75.6
Q ss_pred cccccCcccccccchhhHHHhHhhcCCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHH
Q psy9360 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHT 212 (236)
Q Consensus 133 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~ 212 (236)
|.|. .|.+.|...+.|.+|.--|+|.+||.|.+|.+.|..+..|..|.+.|.|||||.|. .|+|+|..+.++.+||
T Consensus 895 yaCD--qCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCd--KClKRFSHSGSYSQHM 970 (1007)
T KOG3623|consen 895 YACD--QCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCD--KCLKRFSHSGSYSQHM 970 (1007)
T ss_pred chHH--HHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhh--hhhhhcccccchHhhh
Confidence 8899 79999999999999999999999999999999999999999999999999999995 5999999999999999
Q ss_pred Hhh
Q psy9360 213 KIH 215 (236)
Q Consensus 213 ~~h 215 (236)
...
T Consensus 971 NHR 973 (1007)
T KOG3623|consen 971 NHR 973 (1007)
T ss_pred ccc
Confidence 854
No 9
>KOG3576|consensus
Probab=99.66 E-value=3.3e-17 Score=115.62 Aligned_cols=110 Identities=30% Similarity=0.620 Sum_probs=62.0
Q ss_pred CcccccCccccCCchhHHhhhhhhcCCCCcccccCcccccccchhhHHHhHhhcCCCCCeecccccccccCchHHHhHHH
Q psy9360 104 PFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLR 183 (236)
Q Consensus 104 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 183 (236)
.|.|.+|++.|...--|.+|+.-|...+.+.|.+ ||+.|.+--.|.+|.++|+|-+||+|..|+++|++.-+|..|.+
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK 194 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence 3555555555555555555555555555555553 55555555555555555555555555555555555555555554
Q ss_pred HhcC-----------CCCeeccccccccccCChhhHHHHHHhhcC
Q psy9360 184 IHYG-----------LKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 184 ~h~~-----------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
.-++ .+.|.| ++||..-.....+..|++.|+.
T Consensus 195 kvhgv~~~yaykerr~kl~vc--edcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 195 KVHGVQHQYAYKERRAKLYVC--EDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred HHcCchHHHHHHHhhhheeee--cccCCCCCChhHHHHHHHhcCC
Confidence 3322 244666 4566666666666666665543
No 10
>KOG3576|consensus
Probab=99.59 E-value=6e-16 Score=109.32 Aligned_cols=116 Identities=27% Similarity=0.536 Sum_probs=103.6
Q ss_pred ccCCceeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCccccCCchhHHhhhhhhcCCCCcccccCcccccccchhh
Q psy9360 70 EKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQ 149 (236)
Q Consensus 70 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~ 149 (236)
.....|.| ..|++.|.-...|.+|++-|..-+.+-|..|++.|...-.|++|.++|+|.+||.|. .|++.|.....
T Consensus 113 sd~d~ftC--rvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~--~c~kaftqrcs 188 (267)
T KOG3576|consen 113 SDQDSFTC--RVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCS--LCEKAFTQRCS 188 (267)
T ss_pred CCCCeeee--ehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchh--hhhHHHHhhcc
Confidence 34567999 999999999999999999998888899999999999999999999999999999999 69999999999
Q ss_pred HHHhHhhcCC-----------CCCeecccccccccCchHHHhHHHHhcCCC
Q psy9360 150 RQIHERCHLD-----------SKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189 (236)
Q Consensus 150 l~~H~~~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 189 (236)
|-.|++.-+| .+-|.|+.||..-.....+..|++.|+..-
T Consensus 189 leshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 189 LESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 9999774333 456999999999999999999999887543
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.31 E-value=6.6e-12 Score=104.21 Aligned_cols=136 Identities=18% Similarity=0.465 Sum_probs=104.9
Q ss_pred ceeecCCCCCcccCChHHHHHHHhhcCCCCCccccc--CccccCCchhHHhhhhhhcCCCCcccccCcccccccchhhHH
Q psy9360 74 LHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQ 151 (236)
Q Consensus 74 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~ 151 (236)
.-.| ..|..... ...|..|...- ....-.|+. |+..|. ...+..| +.|+ .|++.|. ...|.
T Consensus 407 ~V~C--~NC~~~i~-l~~l~lHe~~C-~r~~V~Cp~~~Cg~v~~-r~el~~H---------~~C~--~Cgk~f~-~s~Le 469 (567)
T PLN03086 407 TVEC--RNCKHYIP-SRSIALHEAYC-SRHNVVCPHDGCGIVLR-VEEAKNH---------VHCE--KCGQAFQ-QGEME 469 (567)
T ss_pred eEEC--CCCCCccc-hhHHHHHHhhC-CCcceeCCcccccceee-ccccccC---------ccCC--CCCCccc-hHHHH
Confidence 3467 77887644 46666786433 234456874 999884 3334444 4798 6999995 67899
Q ss_pred HhHhhcCCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCC----------hhhHHHHHHhhcCCccc
Q psy9360 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVD----------LSSLKKHTKIHTQQTFH 221 (236)
Q Consensus 152 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~----------~~~l~~H~~~h~~~~~~ 221 (236)
.|..+++ +++.|+ ||..+ ....|..|+.+|..++++.|.+ |++.|.. .+.|..|..+...+++.
T Consensus 470 kH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~ 543 (567)
T PLN03086 470 KHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAP 543 (567)
T ss_pred HHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCC--CCCccccCccccchhhhhhhHHHHHHhcCCcceE
Confidence 9999986 789999 99766 5589999999999999999987 9999952 35799999997669999
Q ss_pred CCccccccCcc
Q psy9360 222 CNLCNKTYKHQ 232 (236)
Q Consensus 222 C~~C~~~f~~~ 232 (236)
|..||+.|+.+
T Consensus 544 C~~Cgk~Vrlr 554 (567)
T PLN03086 544 CDSCGRSVMLK 554 (567)
T ss_pred ccccCCeeeeh
Confidence 99999998764
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.23 E-value=2e-11 Score=101.43 Aligned_cols=147 Identities=20% Similarity=0.384 Sum_probs=103.6
Q ss_pred hHHhhhhhHHHHhhhhhhhhhhhccCCceeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCccccCCchhHHhhhhh
Q psy9360 47 YAEHLQLSEEIMKKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAI 126 (236)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 126 (236)
..|..|..... ...+..|.....- ..-.|+...|+..|. ...+. +.+.|+.|++.|. ...|..|...
T Consensus 408 V~C~NC~~~i~-l~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~-r~el~---------~H~~C~~Cgk~f~-~s~LekH~~~ 474 (567)
T PLN03086 408 VECRNCKHYIP-SRSIALHEAYCSR-HNVVCPHDGCGIVLR-VEEAK---------NHVHCEKCGQAFQ-QGEMEKHMKV 474 (567)
T ss_pred EECCCCCCccc-hhHHHHHHhhCCC-cceeCCcccccceee-ccccc---------cCccCCCCCCccc-hHHHHHHHHh
Confidence 34555554433 3334456544332 234573225888772 22222 3358999999996 6779999998
Q ss_pred hcCCCCcccccCcccccccchhhHHHhHhhcCCCCCeecccccccccC----------chHHHhHHHHhcCCCCeecccc
Q psy9360 127 HNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFIS----------NTHKNNHLRIHYGLKPYVCHVE 196 (236)
Q Consensus 127 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~----------~~~l~~H~~~h~~~~~~~C~~~ 196 (236)
++ +++.|+ |+..+ ....|..|+..|...+++.|..|+..|.. .+.|..|..+. +.+++.|..
T Consensus 475 ~H--kpv~Cp---Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~- 546 (567)
T PLN03086 475 FH--EPLQCP---CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDS- 546 (567)
T ss_pred cC--CCccCC---CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccc-
Confidence 75 788997 98654 66899999999999999999999998852 35788998885 889999965
Q ss_pred ccccccCChhhHHHHHHhhc
Q psy9360 197 GCKRKFVDLSSLKKHTKIHT 216 (236)
Q Consensus 197 ~C~~~f~~~~~l~~H~~~h~ 216 (236)
|++.|..+ .|..|+..-|
T Consensus 547 -Cgk~Vrlr-dm~~H~~~~h 564 (567)
T PLN03086 547 -CGRSVMLK-EMDIHQIAVH 564 (567)
T ss_pred -cCCeeeeh-hHHHHHHHhh
Confidence 99888765 4777887544
No 13
>PHA00733 hypothetical protein
Probab=99.17 E-value=2.7e-11 Score=82.53 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=52.5
Q ss_pred CCCcccccCcccccccchhhHHHh--H---hhcCCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCC
Q psy9360 130 DRPYKCNYTSCGRHFRTHTQRQIH--E---RCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVD 204 (236)
Q Consensus 130 ~~~~~C~~~~C~~~f~~~~~l~~H--~---~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 204 (236)
.+++.|. .|.+.|.....|..+ + ..+.+.+||.|+.||+.|.+...|..|++.| +.+|.|.+ |++.|..
T Consensus 38 ~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~--CgK~F~~ 111 (128)
T PHA00733 38 QKRLIRA--VVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPV--CGKEFRN 111 (128)
T ss_pred hhhHHHH--HHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCC--CCCccCC
Confidence 4445555 355555444443333 1 1223466788888888888888888887765 34678855 8888888
Q ss_pred hhhHHHHHHhhcC
Q psy9360 205 LSSLKKHTKIHTQ 217 (236)
Q Consensus 205 ~~~l~~H~~~h~~ 217 (236)
...|.+|+...++
T Consensus 112 ~~sL~~H~~~~h~ 124 (128)
T PHA00733 112 TDSTLDHVCKKHN 124 (128)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888876654
No 14
>PHA02768 hypothetical protein; Provisional
Probab=99.16 E-value=2e-11 Score=68.69 Aligned_cols=43 Identities=16% Similarity=0.442 Sum_probs=32.7
Q ss_pred CeeccccccccccCChhhHHHHHHhhcCCcccCCccccccCccCCC
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFHCNLCNKTYKHQQSI 235 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~L 235 (236)
.|+|+. ||+.|...++|..|+++|. ++|+|..|++.|.+.+.|
T Consensus 5 ~y~C~~--CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 5 GYECPI--CGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred ccCcch--hCCeeccHHHHHHHHHhcC-CcccCCcccceeccccee
Confidence 367754 8888888888888888877 677888888888777665
No 15
>PHA00733 hypothetical protein
Probab=99.07 E-value=1.7e-10 Score=78.59 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=69.3
Q ss_pred hHHHHHHHhhcCCCCCcccccCccccCCchhHHhh--h---hhhcCCCCcccccCcccccccchhhHHHhHhhcCCCCCe
Q psy9360 89 QAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKH--S---AIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPY 163 (236)
Q Consensus 89 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H--~---~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~ 163 (236)
...|.++-..-..++++.|.+|...|.....|..+ + ..++++.+|.|+ .|++.|.....|..|++.+ ..++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~--~Cgk~Fss~s~L~~H~r~h--~~~~ 100 (128)
T PHA00733 25 LEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCP--LCLMPFSSSVSLKQHIRYT--EHSK 100 (128)
T ss_pred HHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCC--CCCCcCCCHHHHHHHHhcC--CcCc
Confidence 34444433333346678888888777776665555 1 233457889998 6999999999999998876 3468
Q ss_pred ecccccccccCchHHHhHHHHhcC
Q psy9360 164 SCHVCGRSFISNTHKNNHLRIHYG 187 (236)
Q Consensus 164 ~C~~C~~~f~~~~~l~~H~~~h~~ 187 (236)
.|.+|++.|.....|..|+...++
T Consensus 101 ~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 101 VCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred cCCCCCCccCCHHHHHHHHHHhcC
Confidence 999999999999999999887664
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.96 E-value=3.3e-10 Score=63.78 Aligned_cols=44 Identities=27% Similarity=0.503 Sum_probs=36.7
Q ss_pred CeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHH
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLK 209 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~ 209 (236)
.|+|+.||+.|...++|..|+++|+ ++++|.. |++.|...+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~--C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSN--CKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCc--ccceecccceeE
Confidence 3789999999999999999999987 6888854 999988877664
No 17
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.86 E-value=1.4e-09 Score=52.39 Aligned_cols=24 Identities=42% Similarity=0.898 Sum_probs=12.1
Q ss_pred HHhHHHHhcCCCCeeccccccccccC
Q psy9360 178 KNNHLRIHYGLKPYVCHVEGCKRKFV 203 (236)
Q Consensus 178 l~~H~~~h~~~~~~~C~~~~C~~~f~ 203 (236)
|..|+++|++++||.|+. |++.|.
T Consensus 2 l~~H~~~H~~~k~~~C~~--C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPY--CGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESS--SSEEES
T ss_pred HHHHhhhcCCCCCCCCCC--CcCeeC
Confidence 445555555555555533 555543
No 18
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.69 E-value=1.9e-08 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.882 Sum_probs=17.9
Q ss_pred hHHHHHHhhcC-CcccCCccccccCc
Q psy9360 207 SLKKHTKIHTQ-QTFHCNLCNKTYKH 231 (236)
Q Consensus 207 ~l~~H~~~h~~-~~~~C~~C~~~f~~ 231 (236)
+|.+|+++|.+ +||+|+.|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 46777777777 77777777777753
No 19
>KOG3993|consensus
Probab=98.67 E-value=3e-09 Score=83.69 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=33.8
Q ss_pred ecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhc
Q psy9360 164 SCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216 (236)
Q Consensus 164 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~ 216 (236)
.++.+|..+.++..--.+.+.-..+..|.|.+ |.-.|.++..|.+|+..-|
T Consensus 432 ~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky--~~atfyss~~ltrhin~~H 482 (500)
T KOG3993|consen 432 LPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKY--CPATFYSSPGLTRHINKCH 482 (500)
T ss_pred CCCCCCCCcccCCCCCccccccchhhcccccc--chHhhhcCcchHhHhhhcC
Confidence 35556655555544444444444556688876 9999999999999887543
No 20
>KOG3993|consensus
Probab=98.53 E-value=4.8e-08 Score=77.10 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=94.8
Q ss_pred hhHHhhhhhHHHHhhhhhhhhhhhccCCceeecCCCCCcccCChHHHHHHHhhcCC------------------------
Q psy9360 46 IYAEHLQLSEEIMKKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAV------------------------ 101 (236)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~------------------------ 101 (236)
.+.|..|...+.+...|..|.-..-....|+| ++|+++|+-..+|..|.+.|..
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e 344 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE 344 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence 57899999999999999998766666667999 9999999999999999887731
Q ss_pred ---------CCCcccccCccccCCchhHHhhhhhhcCCCC----------------------------------------
Q psy9360 102 ---------QRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP---------------------------------------- 132 (236)
Q Consensus 102 ---------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~---------------------------------------- 132 (236)
+..|.|..|++.|....-|+.|+..|+....
T Consensus 345 a~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~ 424 (500)
T KOG3993|consen 345 AERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYV 424 (500)
T ss_pred ccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeee
Confidence 1237888888888888888888777643100
Q ss_pred ------cccccCcccccccchhhHHHhHhhcCCCCCeecccccccccCchHHHhHHHH
Q psy9360 133 ------YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRI 184 (236)
Q Consensus 133 ------~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 184 (236)
..++ -++..+.+...--.+.+.-.-+..|.|..|.-.|.+...|.+|+..
T Consensus 425 a~sael~~pp--~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~ 480 (500)
T KOG3993|consen 425 AGSAELELPP--YDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK 480 (500)
T ss_pred eccccccCCC--CCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence 1122 1333333332222222222224458899999999999999998864
No 21
>PHA00616 hypothetical protein
Probab=98.51 E-value=5e-08 Score=52.25 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=22.4
Q ss_pred CeecccccccccCchHHHhHHHHhcCCCCeecc
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCH 194 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~ 194 (236)
||.|+.||+.|...+.|..|++.|++++++.|.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 466777777777777777777777766666654
No 22
>PHA00732 hypothetical protein
Probab=98.28 E-value=5.6e-07 Score=55.71 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=9.9
Q ss_pred eecccccccccCchHHHhHHH
Q psy9360 163 YSCHVCGRSFISNTHKNNHLR 183 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~ 183 (236)
|.|+.||+.|.+...|..|++
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r 22 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHAR 22 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhh
Confidence 444444444444444444444
No 23
>PHA00616 hypothetical protein
Probab=98.24 E-value=5e-07 Score=48.46 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=29.8
Q ss_pred CeeccccccccccCChhhHHHHHHhhcC-CcccCCc
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQ-QTFHCNL 224 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~ 224 (236)
||+|+ .||+.|...+.|.+|++.|++ +++.|+.
T Consensus 1 pYqC~--~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCL--RCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccc--hhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 68995 599999999999999999999 8988865
No 24
>PHA00732 hypothetical protein
Probab=98.20 E-value=1e-06 Score=54.51 Aligned_cols=39 Identities=36% Similarity=0.755 Sum_probs=33.5
Q ss_pred CeeccccccccccCChhhHHHHHHh-hcCCcccCCccccccCcc
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKI-HTQQTFHCNLCNKTYKHQ 232 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~C~~C~~~f~~~ 232 (236)
||.|.. |++.|.+..+|..|++. |. ++.|+.||+.|.+.
T Consensus 1 py~C~~--Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~~l 40 (79)
T PHA00732 1 MFKCPI--CGFTTVTLFALKQHARRNHT--LTKCPVCNKSYRRL 40 (79)
T ss_pred CccCCC--CCCccCCHHHHHHHhhcccC--CCccCCCCCEeCCh
Confidence 688965 99999999999999985 54 46899999999853
No 25
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.02 E-value=1e-05 Score=46.48 Aligned_cols=49 Identities=22% Similarity=0.528 Sum_probs=30.2
Q ss_pred eecccccccccCchHHHhHHHHhcC-C-CCeeccccccccccCChhhHHHHHHhhc
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHYG-L-KPYVCHVEGCKRKFVDLSSLKKHTKIHT 216 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~~-~-~~~~C~~~~C~~~f~~~~~l~~H~~~h~ 216 (236)
|.|+.|++. .+...|..|....+. + +.+.|++ |...+. .+|.+|+..++
T Consensus 3 f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPI--CSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred cCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCC--chhhhh--hHHHHHHHHhc
Confidence 677777774 345667777654332 2 4577766 776544 37777777655
No 26
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.98 E-value=3.9e-06 Score=64.17 Aligned_cols=49 Identities=35% Similarity=0.808 Sum_probs=42.3
Q ss_pred CCCCeeccccccccccCChhhHHHHHHhhc-------------------C-CcccCCccccccCccCCC
Q psy9360 187 GLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-------------------Q-QTFHCNLCNKTYKHQQSI 235 (236)
Q Consensus 187 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------------~-~~~~C~~C~~~f~~~~~L 235 (236)
++|||+|+|+.|.|.+.....|+-|+..-+ + |||.|+.|+|.|..-.+|
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGL 414 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGL 414 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccc
Confidence 358999999999999999999999987532 2 789999999999988877
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.97 E-value=5.5e-06 Score=38.53 Aligned_cols=22 Identities=36% Similarity=0.847 Sum_probs=12.7
Q ss_pred eeccccccccccCChhhHHHHHHh
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKI 214 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~ 214 (236)
|+|+. |++.|.....|.+|++.
T Consensus 1 y~C~~--C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPI--CGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETT--TTEEESSHHHHHHHHHH
T ss_pred CCCCC--CCCccCCHHHHHHHHhH
Confidence 45543 66666666666666654
No 28
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.87 E-value=1.3e-05 Score=37.29 Aligned_cols=23 Identities=43% Similarity=1.034 Sum_probs=21.5
Q ss_pred eecccccccccCchHHHhHHHHh
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIH 185 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h 185 (236)
|.|+.|++.|.+...|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 68999999999999999999875
No 29
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.73 E-value=1.1e-05 Score=61.77 Aligned_cols=72 Identities=26% Similarity=0.553 Sum_probs=42.1
Q ss_pred CCCcccccCcccccccchhhHHHhHhh-cCCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhH
Q psy9360 130 DRPYKCNYTSCGRHFRTHTQRQIHERC-HLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSL 208 (236)
Q Consensus 130 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l 208 (236)
++||+|++..|.+.|.+...|..|+.- |...+-..=+ .-..|......+|||+|.| |+|++.....|
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCev--C~KRYKNlNGL 414 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEV--CDKRYKNLNGL 414 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccc--cchhhccCccc
Confidence 477777777777777777777777652 2221111111 0011111133467888866 88888888887
Q ss_pred HHHHH
Q psy9360 209 KKHTK 213 (236)
Q Consensus 209 ~~H~~ 213 (236)
+-|..
T Consensus 415 KYHr~ 419 (423)
T COG5189 415 KYHRK 419 (423)
T ss_pred eeccc
Confidence 77654
No 30
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.72 E-value=7.8e-05 Score=42.77 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=30.9
Q ss_pred CcccccCcccccccchhhHHHhHhh-cCC-CCCeecccccccccCchHHHhHHHHhc
Q psy9360 132 PYKCNYTSCGRHFRTHTQRQIHERC-HLD-SKPYSCHVCGRSFISNTHKNNHLRIHY 186 (236)
Q Consensus 132 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~ 186 (236)
.|.|++ |++ ..+...|..|... |.. .+.+.|++|...+. .+|..|+..++
T Consensus 2 ~f~CP~--C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPY--CGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCC--CCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 366774 777 4556677777553 333 24577777776544 36777776654
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.67 E-value=3.9e-05 Score=35.81 Aligned_cols=23 Identities=30% Similarity=0.837 Sum_probs=11.7
Q ss_pred eeccccccccccCChhhHHHHHHhh
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKIH 215 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~h 215 (236)
|.|++ |++.|.+...|+.|+++|
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHH
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhh
Confidence 44544 666666666666665554
No 32
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.66 E-value=3.5e-05 Score=37.31 Aligned_cols=25 Identities=36% Similarity=0.909 Sum_probs=17.1
Q ss_pred CeeccccccccccCChhhHHHHHHhhc
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKIHT 216 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~h~ 216 (236)
||+|.+ |++.|.+...|..|++.|.
T Consensus 1 ~~~C~~--C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDE--CGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETT--TTEEESSHHHHHHHHCTTT
T ss_pred CCCCCc--cCCccCChhHHHHHhHHhc
Confidence 466754 7777777777777776664
No 33
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.65 E-value=2.5e-05 Score=37.83 Aligned_cols=25 Identities=36% Similarity=0.822 Sum_probs=20.6
Q ss_pred CeecccccccccCchHHHhHHHHhc
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLRIHY 186 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~~h~ 186 (236)
||+|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 5788888888888888888887764
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.62 E-value=5.6e-05 Score=35.28 Aligned_cols=24 Identities=38% Similarity=0.928 Sum_probs=20.3
Q ss_pred eecccccccccCchHHHhHHHHhc
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHY 186 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~ 186 (236)
|.|+.|+..|.+...|..|+.+|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 689999999999999999999874
No 35
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.50 E-value=7.2e-05 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.723 Sum_probs=11.0
Q ss_pred eecccccccccCchHHHhHHHH
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRI 184 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~ 184 (236)
+.|..|++.|.+...|..|++.
T Consensus 51 ~~C~~C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 51 FRCPYCNKTFRSREALQEHMRS 72 (100)
T ss_dssp EEBSSSS-EESSHHHHHHHHHH
T ss_pred CCCCccCCCCcCHHHHHHHHcC
Confidence 5555555555555555555543
No 36
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.47 E-value=8.9e-05 Score=48.43 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=21.6
Q ss_pred cccCcccccccchhhHHHhHhhcCCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHh
Q psy9360 135 CNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKI 214 (236)
Q Consensus 135 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 214 (236)
|. -|+..|.+...|..|+...++-..- ....+.....+..+.+.-. ...+.|.+ |++.|.+...|..|++.
T Consensus 2 C~--~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~-~~~~~C~~--C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 2 CL--FCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKV-KESFRCPY--CNKTFRSREALQEHMRS 72 (100)
T ss_dssp ------------------------------------------------------SSEEBSS--SS-EESSHHHHHHHHHH
T ss_pred cc--ccccccccccccccccccccccccc----ccccccccccccccccccc-CCCCCCCc--cCCCCcCHHHHHHHHcC
Confidence 66 4999999999999998765542211 1112223344444443321 23699987 99999999999999996
Q ss_pred h
Q psy9360 215 H 215 (236)
Q Consensus 215 h 215 (236)
+
T Consensus 73 ~ 73 (100)
T PF12756_consen 73 K 73 (100)
T ss_dssp T
T ss_pred c
Confidence 5
No 37
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.29 E-value=0.0003 Score=38.64 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=12.4
Q ss_pred CCeecccccccccCchHHHhHHHHhcCCC
Q psy9360 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189 (236)
Q Consensus 161 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 189 (236)
.|-.|++|+..+.+..+|++|+.+.++.+
T Consensus 23 ~PatCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 23 QPATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp --EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCCCcchhhccchhhHHHHHHHHhccc
Confidence 34455555555555555555555444444
No 38
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.11 E-value=0.00056 Score=37.60 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=22.8
Q ss_pred cCCCCeeccccccccccCChhhHHHHHHhhcC-Cc
Q psy9360 186 YGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ-QT 219 (236)
Q Consensus 186 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~ 219 (236)
..+.|-+|++ |+..+.+..+|++|+.++|+ ||
T Consensus 20 ~S~~PatCP~--C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 20 QSEQPATCPI--CGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TTS--EE-TT--T--EESSHHHHHHHHHHHTTTS-
T ss_pred ccCCCCCCCc--chhhccchhhHHHHHHHHhcccC
Confidence 3568999977 99999999999999998877 65
No 39
>KOG4173|consensus
Probab=96.99 E-value=0.00052 Score=49.50 Aligned_cols=84 Identities=26% Similarity=0.471 Sum_probs=68.3
Q ss_pred CCCcccccCcccccccchhhHHHhHhhcCCCCCeecccccccccCchHHHhHHHH-h---------cCCCCeeccccccc
Q psy9360 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRI-H---------YGLKPYVCHVEGCK 199 (236)
Q Consensus 130 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h---------~~~~~~~C~~~~C~ 199 (236)
...+.|++..|...|.....+-.|..+.++ -.|.+|.+.|++...|..|+.. | .|.-.|+|-+++|+
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt 153 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCT 153 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhh
Confidence 345788877898999888888888776665 3899999999999999999752 2 34456999999999
Q ss_pred cccCChhhHHHHHHhhc
Q psy9360 200 RKFVDLSSLKKHTKIHT 216 (236)
Q Consensus 200 ~~f~~~~~l~~H~~~h~ 216 (236)
..|.....-..|+..-|
T Consensus 154 ~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 154 EKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhhhhhhhhhhHHHHhc
Confidence 99999999999997544
No 40
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.95 E-value=0.00077 Score=31.80 Aligned_cols=18 Identities=39% Similarity=0.746 Sum_probs=8.9
Q ss_pred cccccCChhhHHHHHHhh
Q psy9360 198 CKRKFVDLSSLKKHTKIH 215 (236)
Q Consensus 198 C~~~f~~~~~l~~H~~~h 215 (236)
|++.|.....|..|++.|
T Consensus 6 C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 6 CGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CcchhCCHHHHHHHHHHh
Confidence 555555555555554433
No 41
>PRK04860 hypothetical protein; Provisional
Probab=96.77 E-value=0.001 Score=47.16 Aligned_cols=37 Identities=22% Similarity=0.755 Sum_probs=21.4
Q ss_pred CeeccccccccccCChhhHHHHHHhhcC-CcccCCccccccCcc
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQ-QTFHCNLCNKTYKHQ 232 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~~f~~~ 232 (236)
+|.|. |+. ....+++|.++|.+ ++|.|..|+..|...
T Consensus 119 ~Y~C~---C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK---CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC---CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 46662 554 45555666666665 556666666665544
No 42
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.68 E-value=0.0015 Score=30.74 Aligned_cols=24 Identities=38% Similarity=0.876 Sum_probs=21.6
Q ss_pred eecccccccccCchHHHhHHHHhc
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHY 186 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~ 186 (236)
|.|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 579999999999999999998764
No 43
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.58 E-value=0.0013 Score=31.01 Aligned_cols=22 Identities=27% Similarity=0.828 Sum_probs=11.8
Q ss_pred eeccccccccccCChhhHHHHHHh
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKI 214 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~ 214 (236)
|.|.+ |++.|.+...|..|++.
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTT
T ss_pred CCCCC--CCCCcCCHHHHHHHHCc
Confidence 34544 55555555555555543
No 44
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.57 E-value=0.0019 Score=30.40 Aligned_cols=22 Identities=36% Similarity=0.839 Sum_probs=20.1
Q ss_pred eecccccccccCchHHHhHHHH
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRI 184 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~ 184 (236)
|.|.+|+..|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 6899999999999999999875
No 45
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.55 E-value=0.00072 Score=56.26 Aligned_cols=151 Identities=24% Similarity=0.463 Sum_probs=104.4
Q ss_pred ceeecCCCCCcccCChHHHHHHHh--hcCCC--CCcccc--cCccccCCchhHHhhhhhhcCCCCcccccCcccccccch
Q psy9360 74 LHVCTYEDCNSVFQTQAEWEEHAR--MHAVQ--RPFGCR--YCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTH 147 (236)
Q Consensus 74 ~~~C~~~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 147 (236)
.+.| ..|...|.....|..|.. .|.++ +++.|. .|++.|.....+..|...|.+..++.+.+..+...+...
T Consensus 289 ~~~~--~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (467)
T COG5048 289 PIKS--KQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPL 366 (467)
T ss_pred CCCC--ccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccc
Confidence 5667 889999999999999988 78888 899999 799999999999999999888877777654555555443
Q ss_pred hhHH-----HhHhhcCCCCCeeccc--ccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhcC-Cc
Q psy9360 148 TQRQ-----IHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ-QT 219 (236)
Q Consensus 148 ~~l~-----~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~ 219 (236)
..-. .............+.. |-..+.....+..|...|....++.+....|.+.|.....+..|++.|.. .+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (467)
T COG5048 367 LNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAP 446 (467)
T ss_pred cCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCc
Confidence 3211 1111111222233322 55666667777777777776665555445688888888888888888877 45
Q ss_pred ccCCccc
Q psy9360 220 FHCNLCN 226 (236)
Q Consensus 220 ~~C~~C~ 226 (236)
+.|..++
T Consensus 447 ~~~~~~~ 453 (467)
T COG5048 447 LLCSILK 453 (467)
T ss_pred eeecccc
Confidence 4444444
No 46
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.32 E-value=0.0032 Score=29.26 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=7.3
Q ss_pred cccccCChhhHHHHHHhh
Q psy9360 198 CKRKFVDLSSLKKHTKIH 215 (236)
Q Consensus 198 C~~~f~~~~~l~~H~~~h 215 (236)
|+.... ...|.+|++.|
T Consensus 6 C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 6 CSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp SS-EES-HHHHHHHHHHH
T ss_pred CCCcCC-HHHHHHHHHhh
Confidence 444444 44444444443
No 47
>PRK04860 hypothetical protein; Provisional
Probab=96.24 E-value=0.0032 Score=44.68 Aligned_cols=38 Identities=29% Similarity=0.625 Sum_probs=27.6
Q ss_pred CeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCCh
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDL 205 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 205 (236)
+|.|. |+. ....+..|.++|+++++|.|. .|+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~--~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCR--RCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECC--CCCceeEEe
Confidence 57887 776 556677888888888888884 488777644
No 48
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.97 E-value=0.0018 Score=31.12 Aligned_cols=21 Identities=24% Similarity=0.770 Sum_probs=12.3
Q ss_pred eecccccccccCchHHHhHHH
Q psy9360 163 YSCHVCGRSFISNTHKNNHLR 183 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~ 183 (236)
|.|..|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 456666666666666655554
No 49
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.84 E-value=0.0082 Score=27.84 Aligned_cols=23 Identities=30% Similarity=0.597 Sum_probs=18.8
Q ss_pred eecccccccccCchHHHhHHHHhc
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHY 186 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~ 186 (236)
|+|+.|+.... ...|..|++.++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 68999999998 889999999875
No 50
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.06 E-value=0.042 Score=43.28 Aligned_cols=131 Identities=22% Similarity=0.375 Sum_probs=87.7
Q ss_pred ceeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCc---cccC------CchhHHhhhhhhcCC----CCcccccCcc
Q psy9360 74 LHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCD---KAFK------TSGDLSKHSAIHNGD----RPYKCNYTSC 140 (236)
Q Consensus 74 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---~~f~------~~~~l~~H~~~h~~~----~~~~C~~~~C 140 (236)
.|.||-..|..+......|..|.+..++. +-|.+|- +.|. ....|..|...-..+ ---.|.+ |
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~F--C 226 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIF--C 226 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhh--c
Confidence 48897777888888888899998875542 4555553 2332 344567776553322 1236885 9
Q ss_pred cccccchhhHHHhHhhcCCCCCeecccccc-------cccCchHHHhHHHHhcCCCCeeccccccc----cccCChhhHH
Q psy9360 141 GRHFRTHTQRQIHERCHLDSKPYSCHVCGR-------SFISNTHKNNHLRIHYGLKPYVCHVEGCK----RKFVDLSSLK 209 (236)
Q Consensus 141 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~-------~f~~~~~l~~H~~~h~~~~~~~C~~~~C~----~~f~~~~~l~ 209 (236)
...|.+...|..|.+..+. .|-+|.+ -|.+...|..|.+.-+ |.|.+--|. ..|.+.-.|.
T Consensus 227 ~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~ 298 (493)
T COG5236 227 KIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELL 298 (493)
T ss_pred cceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHH
Confidence 9999999999999986553 5666654 3777888888886432 555432222 3588889999
Q ss_pred HHHHhhc
Q psy9360 210 KHTKIHT 216 (236)
Q Consensus 210 ~H~~~h~ 216 (236)
.|+..-+
T Consensus 299 ~h~~~~h 305 (493)
T COG5236 299 EHLTRFH 305 (493)
T ss_pred HHHHHHh
Confidence 9986543
No 51
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.96 E-value=0.0061 Score=29.26 Aligned_cols=22 Identities=32% Similarity=0.741 Sum_probs=19.5
Q ss_pred eeccccccccccCChhhHHHHHHh
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKI 214 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~ 214 (236)
|.|.+ |++.|.+...|..|++.
T Consensus 2 ~~C~~--C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDA--CDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTT--TTBBBSSHHHHHCCTTS
T ss_pred CCccc--CCCCcCCHHHHHHHHcc
Confidence 67976 99999999999999875
No 52
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.92 E-value=0.0071 Score=50.30 Aligned_cols=161 Identities=18% Similarity=0.246 Sum_probs=112.5
Q ss_pred hhHHhhhhhHHHHhhhhhhhhh--hhccC--CceeecCCCCCcccCChHHHHHHHhhcCCCCCccccc--CccccCCchh
Q psy9360 46 IYAEHLQLSEEIMKKSLQEDEK--IFEKE--KLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGD 119 (236)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~h~~--~~~~~--~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~ 119 (236)
...+..|...+.....+..|.+ .|..+ +++.|+...|++.|.....+..|...|.+..++.+.. +...+.....
T Consensus 289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (467)
T COG5048 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368 (467)
T ss_pred CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccC
Confidence 4566677778888888888888 78888 8999933389999999999999999998877766655 3444333333
Q ss_pred HHhhhh-----hhcCCCCcccccCcccccccchhhHHHhHhhcCCCC--CeecccccccccCchHHHhHHHHhcCCCCee
Q psy9360 120 LSKHSA-----IHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSK--PYSCHVCGRSFISNTHKNNHLRIHYGLKPYV 192 (236)
Q Consensus 120 l~~H~~-----~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~ 192 (236)
-..+.. .-.......+....|...+.....+..|...+.... .+.+..|...|.....+..|++.|....++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (467)
T COG5048 369 NEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLL 448 (467)
T ss_pred CCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCcee
Confidence 211111 112233444544457777777777888877776655 5778889999999999999999998888877
Q ss_pred ccccccccccCChhhHH
Q psy9360 193 CHVEGCKRKFVDLSSLK 209 (236)
Q Consensus 193 C~~~~C~~~f~~~~~l~ 209 (236)
|. +-+.|.....+.
T Consensus 449 ~~---~~~~~~~~~~~~ 462 (467)
T COG5048 449 CS---ILKSFRRDLDLS 462 (467)
T ss_pred ec---cccccchhhhhh
Confidence 74 444444444443
No 53
>KOG2231|consensus
Probab=94.34 E-value=0.062 Score=46.60 Aligned_cols=125 Identities=25% Similarity=0.466 Sum_probs=70.8
Q ss_pred eeecCCCCCcccC---------------ChHHHHHHHhhcCCCCCcccccCc---ccc------CCchhHHhhhhhhcC-
Q psy9360 75 HVCTYEDCNSVFQ---------------TQAEWEEHARMHAVQRPFGCRYCD---KAF------KTSGDLSKHSAIHNG- 129 (236)
Q Consensus 75 ~~C~~~~C~~~f~---------------~~~~l~~H~~~h~~~~~~~C~~C~---~~f------~~~~~l~~H~~~h~~- 129 (236)
+.| .+|+..|. ....|+.|+...+ +.+.|.+|- +.| -+...|..|++.--.
T Consensus 100 ~~C--~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d 175 (669)
T KOG2231|consen 100 HSC--HICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH--KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPD 175 (669)
T ss_pred hhc--CccccchhhhcccCCCccccchhHHHHHHHHHHHhh--hhhccccccccceeeeeeeehehHHHHHHHHhcCCCc
Confidence 567 77776662 6677888874332 334555543 222 233556666554211
Q ss_pred CCC----cccccCcccccccchhhHHHhHhhcCCCCCeecccc------cccccCchHHHhHHHHhcCCCCeeccccccc
Q psy9360 130 DRP----YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVC------GRSFISNTHKNNHLRIHYGLKPYVCHVEGCK 199 (236)
Q Consensus 130 ~~~----~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~ 199 (236)
++. ..|. .|...|.....|..|++.++ |.|..| +..|.....|..|.+.++ |.|..+-|.
T Consensus 176 ~~s~rGhp~C~--~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~ 245 (669)
T KOG2231|consen 176 DESCRGHPLCK--FCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCR 245 (669)
T ss_pred cccccCCccch--hhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccc
Confidence 221 3576 48888888888888887654 455555 455677778888887665 444311232
Q ss_pred -cccCChhhHHHHHH
Q psy9360 200 -RKFVDLSSLKKHTK 213 (236)
Q Consensus 200 -~~f~~~~~l~~H~~ 213 (236)
+.|.....+..+++
T Consensus 246 ~~~f~~~~~~ei~lk 260 (669)
T KOG2231|consen 246 TKKFYVAFELEIELK 260 (669)
T ss_pred cceeeehhHHHHHHH
Confidence 23333334555555
No 54
>KOG2231|consensus
Probab=94.19 E-value=0.13 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=11.2
Q ss_pred ecccccccccCchHHHhHHHHh
Q psy9360 164 SCHVCGRSFISNTHKNNHLRIH 185 (236)
Q Consensus 164 ~C~~C~~~f~~~~~l~~H~~~h 185 (236)
.|..|...|.....|..|++.+
T Consensus 184 ~C~~C~~~fld~~el~rH~~~~ 205 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLRFD 205 (669)
T ss_pred cchhhhhhhccHHHHHHhhccc
Confidence 3555555555555555555443
No 55
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.10 E-value=0.03 Score=44.02 Aligned_cols=90 Identities=19% Similarity=0.424 Sum_probs=53.5
Q ss_pred cccccCcccccccchhhHHHhHhhcCCCCCeeccccc---cccc------CchHHHhHHHHhcCCC----Ceeccccccc
Q psy9360 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCG---RSFI------SNTHKNNHLRIHYGLK----PYVCHVEGCK 199 (236)
Q Consensus 133 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---~~f~------~~~~l~~H~~~h~~~~----~~~C~~~~C~ 199 (236)
|.|+...|......+..|..|.++.++. +.|.+|- +.|. ++..|+.|...-..+. --.|.+ |.
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~F--C~ 227 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIF--CK 227 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhh--cc
Confidence 5676656666666677777777765543 4566652 3332 2345666655433221 135766 78
Q ss_pred cccCChhhHHHHHHhhcCCcccCCccc
Q psy9360 200 RKFVDLSSLKKHTKIHTQQTFHCNLCN 226 (236)
Q Consensus 200 ~~f~~~~~l~~H~~~h~~~~~~C~~C~ 226 (236)
..|.+-..|.+|+|..+.+-|.|+.-+
T Consensus 228 ~~FYdDDEL~~HcR~~HE~ChICD~v~ 254 (493)
T COG5236 228 IYFYDDDELRRHCRLRHEACHICDMVG 254 (493)
T ss_pred ceecChHHHHHHHHhhhhhhhhhhccC
Confidence 888888888888877665555554433
No 56
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.10 E-value=0.045 Score=25.71 Aligned_cols=15 Identities=53% Similarity=0.955 Sum_probs=7.3
Q ss_pred cccccCChhhHHHHHH
Q psy9360 198 CKRKFVDLSSLKKHTK 213 (236)
Q Consensus 198 C~~~f~~~~~l~~H~~ 213 (236)
||+.| ....|.+|+.
T Consensus 8 CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 8 CGRKF-NPDRLEKHEK 22 (25)
T ss_pred CCCEE-CHHHHHHHHH
Confidence 55555 4444555543
No 57
>KOG1146|consensus
Probab=93.32 E-value=0.034 Score=51.29 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=50.1
Q ss_pred CCCeecccccccccCchHHHhHHHH--hcCC-----------------------------------------CCeecccc
Q psy9360 160 SKPYSCHVCGRSFISNTHKNNHLRI--HYGL-----------------------------------------KPYVCHVE 196 (236)
Q Consensus 160 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~-----------------------------------------~~~~C~~~ 196 (236)
.++|.|..|...+....+|..|+.. |..+ -.+.|.+
T Consensus 516 ~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~v- 594 (1406)
T KOG1146|consen 516 GKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEV- 594 (1406)
T ss_pred CCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhh-
Confidence 4568888888888888888888753 2100 0388876
Q ss_pred ccccccCChhhHHHHHHh-hcCC-cccCCccccccCccCC
Q psy9360 197 GCKRKFVDLSSLKKHTKI-HTQQ-TFHCNLCNKTYKHQQS 234 (236)
Q Consensus 197 ~C~~~f~~~~~l~~H~~~-h~~~-~~~C~~C~~~f~~~~~ 234 (236)
|++.-.-..+|+.|+.. ++-+ +.-|..++..+.....
T Consensus 595 -c~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~ 633 (1406)
T KOG1146|consen 595 -CSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASL 633 (1406)
T ss_pred -hcchhhhhhccccccccCCCCCChHHHhhhcchhhcccc
Confidence 98888888888888874 3333 3667777766655443
No 58
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=93.31 E-value=0.065 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.690 Sum_probs=13.3
Q ss_pred CeecccccccccCchHHHhHHH
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLR 183 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~ 183 (236)
+|.|..|+..|.+...+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 3556666666666666666654
No 59
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.80 E-value=0.14 Score=25.93 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.4
Q ss_pred CeeccccccccccCChhhHHHHHHh
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKI 214 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~ 214 (236)
+|.|.+ |++.|.+...+..|++.
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHCh
Confidence 588977 99999999999999864
No 60
>KOG2893|consensus
Probab=91.41 E-value=0.059 Score=40.16 Aligned_cols=41 Identities=27% Similarity=0.647 Sum_probs=19.5
Q ss_pred cccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHH
Q psy9360 165 CHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKH 211 (236)
Q Consensus 165 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H 211 (236)
|.-|++.|.....|.+|++.- -|+|.| |.+..-+.-.|..|
T Consensus 13 cwycnrefddekiliqhqkak----hfkchi--chkkl~sgpglsih 53 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKAK----HFKCHI--CHKKLFSGPGLSIH 53 (341)
T ss_pred eeecccccchhhhhhhhhhhc----cceeee--ehhhhccCCCceee
Confidence 445555555555555554421 255554 55554444444333
No 61
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=91.26 E-value=0.14 Score=25.84 Aligned_cols=11 Identities=45% Similarity=1.102 Sum_probs=5.9
Q ss_pred eeccccccccc
Q psy9360 163 YSCHVCGRSFI 173 (236)
Q Consensus 163 ~~C~~C~~~f~ 173 (236)
|+|.+||..+.
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 45555555544
No 62
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=90.71 E-value=0.65 Score=30.77 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=22.4
Q ss_pred eec--cccccccccCChhhHHHHHHhhcC
Q psy9360 191 YVC--HVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 191 ~~C--~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
|.| ..+.|+..+.+...+++|++.+||
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 899 223499999999999999998875
No 63
>KOG2785|consensus
Probab=90.66 E-value=0.83 Score=36.81 Aligned_cols=52 Identities=23% Similarity=0.547 Sum_probs=42.0
Q ss_pred CeecccccccccCchHHHhHHHHhcCC-----------------------CCeeccccccc---cccCChhhHHHHHHhh
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLRIHYGL-----------------------KPYVCHVEGCK---RKFVDLSSLKKHTKIH 215 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~C~~~~C~---~~f~~~~~l~~H~~~h 215 (236)
|-.|-.|+..+.+...-..||..+++- .-+.|-+ |. +.|.+..+.++||+..
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~--CN~~~~~f~sleavr~HM~~K 243 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF--CNELGRPFSSLEAVRAHMRDK 243 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE--eccccCcccccHHHHHHHhhc
Confidence 467888999999888888999887763 2488877 88 8899999999999753
No 64
>KOG1146|consensus
Probab=89.11 E-value=0.096 Score=48.52 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=59.9
Q ss_pred CCCCcccCChHHHHHHHhhcC----CCCCcccccCccccCCchhHHhhhhhhcCCCCcccccCcccccccchhhHHHhHh
Q psy9360 80 EDCNSVFQTQAEWEEHARMHA----VQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHER 155 (236)
Q Consensus 80 ~~C~~~f~~~~~l~~H~~~h~----~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 155 (236)
..|-.-|........+-.... ....+.|..|+..+...-.+. |+-+ ..+|.|. .|...|.....|..|++
T Consensus 1232 ~~~e~~f~~~~~~~~~a~~~~~~~~~sGe~~c~~~~~~~~~~~~~~-~l~~---~~~~~~~--~~~~~~~~~~~l~~~~~ 1305 (1406)
T KOG1146|consen 1232 NALEQPFPQEPEPTATAPPKPPELPASGEGECGAVDELLTPSFGIS-TLDV---THRYLCR--QCKMAFDGEAPLTAHQR 1305 (1406)
T ss_pred HhhhcCccCcccccccCCCCCCcCcCCCcchhhhccccccCcccee-eccc---chhHHHH--HHHhhhcchhHHHHHHH
Confidence 455555555555544432110 112256777777766655554 4333 2346666 57777777766666662
Q ss_pred hcCCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHh
Q psy9360 156 CHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKI 214 (236)
Q Consensus 156 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 214 (236)
. |-+.+.......-|...+-...+| |.+ |...|.....|.+|+++
T Consensus 1306 k-----------~~~~~~~~~~~~~~~l~~~d~~~~-c~~--c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1306 K-----------FCFAGRGSGGSMPPPLRVPDCTYH-CLA--CEVLLSGREALQIHMRS 1350 (1406)
T ss_pred H-----------HHhccCccccCCCCcccCcccccc-chH--HHhhcchhHHHHHHHHH
Confidence 1 112222222222233233333445 766 88888888888888774
No 65
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=88.45 E-value=0.23 Score=27.97 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=9.3
Q ss_pred CeecccccccccCchHHHhHH
Q psy9360 162 PYSCHVCGRSFISNTHKNNHL 182 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~ 182 (236)
-++|+.||..|....++.+|.
T Consensus 17 ~lrCPRC~~~FR~~K~Y~RHV 37 (65)
T COG4049 17 FLRCPRCGMVFRRRKDYIRHV 37 (65)
T ss_pred eeeCCchhHHHHHhHHHHHHh
Confidence 344444444444444444444
No 66
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.33 E-value=0.36 Score=32.75 Aligned_cols=59 Identities=29% Similarity=0.677 Sum_probs=37.2
Q ss_pred CCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCC--hhhHHHHHHhhcCCcccCCccccccCccCC
Q psy9360 158 LDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVD--LSSLKKHTKIHTQQTFHCNLCNKTYKHQQS 234 (236)
Q Consensus 158 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~--~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~ 234 (236)
.+.+.|+|.+|..+...+.- -||-+| ||.+--. -..|++|-.+|. .|+.|.-+|++.+.
T Consensus 76 ~d~~lYeCnIC~etS~ee~F----------LKPneC----CgY~iCn~Cya~LWK~~~~yp----vCPvCkTSFKss~~ 136 (140)
T PF05290_consen 76 LDPKLYECNICKETSAEERF----------LKPNEC----CGYSICNACYANLWKFCNLYP----VCPVCKTSFKSSSS 136 (140)
T ss_pred cCCCceeccCcccccchhhc----------CCcccc----cchHHHHHHHHHHHHHcccCC----CCCccccccccccc
Confidence 44567889888887766533 267777 6643222 344565555553 68888888876553
No 67
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=87.26 E-value=0.51 Score=24.47 Aligned_cols=33 Identities=24% Similarity=0.659 Sum_probs=16.6
Q ss_pred ccccCcccccccchhhHHHhHhhcCCCCCeeccccccccc
Q psy9360 134 KCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFI 173 (236)
Q Consensus 134 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 173 (236)
.|+ .|+..|.-... ++..+....+|+.|+..|.
T Consensus 4 ~CP--~C~~~f~v~~~-----~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCP--NCQTRFRVPDD-----KLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECC--CCCceEEcCHH-----HcccCCcEEECCCCCcEee
Confidence 455 56666655443 2223333466666666553
No 68
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.83 E-value=1.1 Score=29.65 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=12.0
Q ss_pred CCcccccCccccCCchhHHh
Q psy9360 103 RPFGCRYCDKAFKTSGDLSK 122 (236)
Q Consensus 103 ~~~~C~~C~~~f~~~~~l~~ 122 (236)
-|..|++|+.+.-....|.+
T Consensus 14 LP~~CpiCgLtLVss~HLAR 33 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLAR 33 (112)
T ss_pred CCCcCCcCCCEEeccchHHH
Confidence 45567777766665555544
No 69
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=85.24 E-value=0.78 Score=23.61 Aligned_cols=29 Identities=17% Similarity=0.605 Sum_probs=13.3
Q ss_pred cccccccchhhHHHhHhhcCCCCCeecccccccc
Q psy9360 139 SCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSF 172 (236)
Q Consensus 139 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 172 (236)
.|+..|.-... ++.......+|+.|+..|
T Consensus 7 ~C~~~y~i~d~-----~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 7 NCQAKYEIDDE-----KIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred CCCCEEeCCHH-----HCCCCCcEEECCCCCCEe
Confidence 45555544433 222223345566655554
No 70
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=84.86 E-value=0.6 Score=23.69 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=7.0
Q ss_pred eecccccccccC
Q psy9360 163 YSCHVCGRSFIS 174 (236)
Q Consensus 163 ~~C~~C~~~f~~ 174 (236)
|+|.+||..+..
T Consensus 3 ~~C~~CG~i~~g 14 (34)
T cd00729 3 WVCPVCGYIHEG 14 (34)
T ss_pred EECCCCCCEeEC
Confidence 566666655543
No 71
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=84.56 E-value=1.8 Score=28.65 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=23.0
Q ss_pred eec----ccccccccCchHHHhHHHHhcC
Q psy9360 163 YSC----HVCGRSFISNTHKNNHLRIHYG 187 (236)
Q Consensus 163 ~~C----~~C~~~f~~~~~l~~H~~~h~~ 187 (236)
|.| ..|+....+...+..|++.+++
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 899 9999999999999999998764
No 72
>KOG2186|consensus
Probab=84.27 E-value=0.58 Score=35.46 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=20.3
Q ss_pred CCCCcccCChHHHHHHHhhcCCCCCcccccCccccCCchhHHhhh
Q psy9360 80 EDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHS 124 (236)
Q Consensus 80 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~ 124 (236)
..||....- ..+.+|+..-++ ..|.|-.|+.+|.. ..+..|.
T Consensus 7 nvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~ 48 (276)
T KOG2186|consen 7 NVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHT 48 (276)
T ss_pred hhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhh
Confidence 555554332 334445544433 34555555555554 3344443
No 73
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=83.38 E-value=0.59 Score=26.33 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=24.6
Q ss_pred cCCCCeeccccccccccCChhhHHHHHHhhcC
Q psy9360 186 YGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 186 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
-||.-+.|+- |+..|..+.++.+|+..-++
T Consensus 13 DGE~~lrCPR--C~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 13 DGEEFLRCPR--CGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred CCceeeeCCc--hhHHHHHhHHHHHHhhHHhh
Confidence 3567799965 99999999999999985443
No 74
>KOG2893|consensus
Probab=83.06 E-value=0.52 Score=35.34 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=37.6
Q ss_pred eeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCccccCCchhHHhhh-hhh
Q psy9360 75 HVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHS-AIH 127 (236)
Q Consensus 75 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h 127 (236)
-.| .-|++.|-...-|..|++. +-|+|.+|.+...+.-.|..|- .+|
T Consensus 11 pwc--wycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 11 PWC--WYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred cee--eecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhh
Confidence 357 6799999999999888765 4489999999888888888883 344
No 75
>KOG2482|consensus
Probab=82.96 E-value=3.8 Score=32.73 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=37.9
Q ss_pred eecccccccccCchHHHhHHHHhcC---------------------------CCCeeccccccccccCChhhHHHHHHhh
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHYG---------------------------LKPYVCHVEGCKRKFVDLSSLKKHTKIH 215 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~~---------------------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h 215 (236)
.+|-.|....-+...|..||..-+. .+...| ..|.-.|.....|..||..+
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c--~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRC--AECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhcccc--ccccccccCcchhhhhcccc
Confidence 5888898888888889999875422 113556 45888899999999998644
No 76
>KOG2785|consensus
Probab=82.69 E-value=5 Score=32.55 Aligned_cols=52 Identities=21% Similarity=0.417 Sum_probs=42.2
Q ss_pred CCcccccCcccccccchhhHHHhHhhcCC-----------------------CCCeeccccc---ccccCchHHHhHHHH
Q psy9360 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLD-----------------------SKPYSCHVCG---RSFISNTHKNNHLRI 184 (236)
Q Consensus 131 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----------------------~~~~~C~~C~---~~f~~~~~l~~H~~~ 184 (236)
.|-.|-+ |+..+.+...-..|+..+++ ...+.|-.|+ +.|.+..+.+.||..
T Consensus 165 ~Pt~CLf--C~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 165 IPTDCLF--CDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CCcceee--cCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 3456774 99999999999999998877 2337788888 999999999999963
No 77
>KOG4173|consensus
Probab=82.13 E-value=0.43 Score=34.93 Aligned_cols=82 Identities=27% Similarity=0.530 Sum_probs=61.2
Q ss_pred ceeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCccccCCchhHHhhhhhhc----------CCCCcccccCccccc
Q psy9360 74 LHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHN----------GDRPYKCNYTSCGRH 143 (236)
Q Consensus 74 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------~~~~~~C~~~~C~~~ 143 (236)
.+.|+-..|...|.+...+..|-.+.++ -.|.+|.+.|.+..-|..|+...+ |...|.|-+..|+..
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K 155 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK 155 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence 4778667788888887777777544444 379999999999999999976432 455688887789999
Q ss_pred ccchhhHHHhHh-hcC
Q psy9360 144 FRTHTQRQIHER-CHL 158 (236)
Q Consensus 144 f~~~~~l~~H~~-~h~ 158 (236)
|.....-..|+- .|.
T Consensus 156 FkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 156 FKTSRDRKDHMIRMHK 171 (253)
T ss_pred hhhhhhhhhHHHHhcc
Confidence 988877777754 443
No 78
>KOG2482|consensus
Probab=81.39 E-value=1.5 Score=34.94 Aligned_cols=107 Identities=22% Similarity=0.373 Sum_probs=74.5
Q ss_pred eeecCCCCCccc-CChHHHHHHHhh-cC---C--C----------------CCcccccCccccCCchhHHhhhhh--hcC
Q psy9360 75 HVCTYEDCNSVF-QTQAEWEEHARM-HA---V--Q----------------RPFGCRYCDKAFKTSGDLSKHSAI--HNG 129 (236)
Q Consensus 75 ~~C~~~~C~~~f-~~~~~l~~H~~~-h~---~--~----------------~~~~C~~C~~~f~~~~~l~~H~~~--h~~ 129 (236)
.+| -.|...+ .+.+.+..|+-. |. | + ..+.|--|.+.|..+..|+.||+. |-.
T Consensus 145 lqC--lFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 145 LQC--LFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred eEE--EEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 456 7787543 466667777642 32 1 0 136899999999999999999875 311
Q ss_pred ----------------------------------------------------CCC--cccccCcccccccchhhHHHhHh
Q psy9360 130 ----------------------------------------------------DRP--YKCNYTSCGRHFRTHTQRQIHER 155 (236)
Q Consensus 130 ----------------------------------------------------~~~--~~C~~~~C~~~f~~~~~l~~H~~ 155 (236)
..+ .+|-+ |....-+...|..|++
T Consensus 223 inPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLf--C~~~~en~~~l~eHmk 300 (423)
T KOG2482|consen 223 INPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLF--CTNFYENPVFLFEHMK 300 (423)
T ss_pred cCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEe--eccchhhHHHHHHHHH
Confidence 011 46774 8888888899999988
Q ss_pred hcCC---------------------------CCCeecccccccccCchHHHhHHHHh
Q psy9360 156 CHLD---------------------------SKPYSCHVCGRSFISNTHKNNHLRIH 185 (236)
Q Consensus 156 ~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~~h 185 (236)
.-+. ...-.|..|.-.|-....|..|+..+
T Consensus 301 ~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 301 IVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred HHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence 5332 11246899999999999999999643
No 79
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=81.22 E-value=1.3 Score=29.33 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=6.7
Q ss_pred CCeecccccccccC
Q psy9360 161 KPYSCHVCGRSFIS 174 (236)
Q Consensus 161 ~~~~C~~C~~~f~~ 174 (236)
.|..|+.||..|.-
T Consensus 25 ~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 25 DPIVCPKCGTEFPP 38 (108)
T ss_pred CCccCCCCCCccCc
Confidence 34445555554443
No 80
>KOG2186|consensus
Probab=80.52 E-value=1.5 Score=33.33 Aligned_cols=46 Identities=28% Similarity=0.636 Sum_probs=24.9
Q ss_pred cccccCcccccccchhhHHHhHhhcCCCCCeecccccccccCchHHHhHHH
Q psy9360 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLR 183 (236)
Q Consensus 133 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 183 (236)
|.|. .||....- ..+-+|+...++ .-|.|-.||..|.. ..+..|..
T Consensus 4 FtCn--vCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCN--VCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehh--hhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 4455 46655433 344456655555 44666666666665 44555554
No 81
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=80.16 E-value=1.3 Score=29.30 Aligned_cols=30 Identities=30% Similarity=0.682 Sum_probs=20.8
Q ss_pred eecccccccccCchHHHhHHHHhcCCCCeeccccccccccCCh
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDL 205 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 205 (236)
..|+.||..|-.. +..|..|+. ||..|.-.
T Consensus 10 R~Cp~CG~kFYDL-----------nk~PivCP~--CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL-----------NKDPIVCPK--CGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC-----------CCCCccCCC--CCCccCcc
Confidence 5777788777664 346777755 88777665
No 82
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=79.66 E-value=1.5 Score=22.64 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=4.4
Q ss_pred eecccccccc
Q psy9360 163 YSCHVCGRSF 172 (236)
Q Consensus 163 ~~C~~C~~~f 172 (236)
.+|+.|+..|
T Consensus 26 v~C~~C~~~~ 35 (38)
T TIGR02098 26 VRCGKCGHVW 35 (38)
T ss_pred EECCCCCCEE
Confidence 4444444433
No 83
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=79.43 E-value=1.2 Score=21.08 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=5.7
Q ss_pred eccccccccc
Q psy9360 164 SCHVCGRSFI 173 (236)
Q Consensus 164 ~C~~C~~~f~ 173 (236)
.|+.||..|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 5666666553
No 84
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=77.26 E-value=2 Score=24.67 Aligned_cols=8 Identities=63% Similarity=1.746 Sum_probs=3.7
Q ss_pred Ceeccccc
Q psy9360 162 PYSCHVCG 169 (236)
Q Consensus 162 ~~~C~~C~ 169 (236)
+|+|+.||
T Consensus 50 ~Y~Cp~CG 57 (61)
T COG2888 50 PYRCPKCG 57 (61)
T ss_pred ceECCCcC
Confidence 34444444
No 85
>KOG4124|consensus
Probab=73.93 E-value=1.1 Score=35.58 Aligned_cols=48 Identities=29% Similarity=0.721 Sum_probs=37.2
Q ss_pred CCCeeccccccccccCChhhHHHHHHhh-------------------c-CCcccCCccccccCccCCC
Q psy9360 188 LKPYVCHVEGCKRKFVDLSSLKKHTKIH-------------------T-QQTFHCNLCNKTYKHQQSI 235 (236)
Q Consensus 188 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-------------------~-~~~~~C~~C~~~f~~~~~L 235 (236)
.++|+|+|+.|.+.+.....|..|..+- . .|+|+|++|.++++.-..|
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l 414 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGL 414 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCC
Confidence 4689999999999998888888776542 1 2679999999988765554
No 86
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.11 E-value=8.1 Score=25.69 Aligned_cols=86 Identities=22% Similarity=0.378 Sum_probs=51.9
Q ss_pred CCCcccccCcccccccchhhHHHhHhhcCC-----C-------CCeecccccccccCchHHHhHHHHhcCCCCeeccccc
Q psy9360 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLD-----S-------KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEG 197 (236)
Q Consensus 130 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~-------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~ 197 (236)
+-|..|+ .|+........|.+...---. + ....|-.|...|....... ...-.....|+|+.
T Consensus 13 ~LP~~Cp--iCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~--~~~~~~~~~y~C~~-- 86 (112)
T TIGR00622 13 ELPVECP--ICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP--FDELKDSHRYVCAV-- 86 (112)
T ss_pred CCCCcCC--cCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccc--ccccccccceeCCC--
Confidence 3456788 598888877777665331100 1 1124888888887543111 00012234688854
Q ss_pred cccccCChhhHHHHHHhhcCCcccCCccc
Q psy9360 198 CKRKFVDLSSLKKHTKIHTQQTFHCNLCN 226 (236)
Q Consensus 198 C~~~f~~~~~l~~H~~~h~~~~~~C~~C~ 226 (236)
|...|-..=+.-.|..+|. |+.|.
T Consensus 87 C~~~FC~dCD~fiHe~Lh~-----CPGC~ 110 (112)
T TIGR00622 87 CKNVFCVDCDVFVHESLHC-----CPGCI 110 (112)
T ss_pred CCCccccccchhhhhhccC-----CcCCC
Confidence 8888888888888887775 66664
No 87
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=70.12 E-value=3.4 Score=22.37 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=5.9
Q ss_pred eeccccccccc
Q psy9360 163 YSCHVCGRSFI 173 (236)
Q Consensus 163 ~~C~~C~~~f~ 173 (236)
|.|..||..|.
T Consensus 3 Y~C~~Cg~~~~ 13 (44)
T smart00659 3 YICGECGRENE 13 (44)
T ss_pred EECCCCCCEee
Confidence 45555555544
No 88
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=69.62 E-value=5.2 Score=28.53 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCCCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccC
Q psy9360 158 LDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFV 203 (236)
Q Consensus 158 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~ 203 (236)
.+..-|.|+.|+..|+...++. .-|.|+. ||....
T Consensus 105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~--Cg~~L~ 139 (158)
T TIGR00373 105 TNNMFFICPNMCVRFTFNEAME---------LNFTCPR--CGAMLD 139 (158)
T ss_pred cCCCeEECCCCCcEeeHHHHHH---------cCCcCCC--CCCEee
Confidence 3345577777777777666653 2477755 776543
No 89
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=68.60 E-value=4.4 Score=19.09 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=10.2
Q ss_pred ecccccccccCchHHHhHHH
Q psy9360 164 SCHVCGRSFISNTHKNNHLR 183 (236)
Q Consensus 164 ~C~~C~~~f~~~~~l~~H~~ 183 (236)
.|++|++.+ ....+..|..
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 466666665 3345555543
No 90
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=68.33 E-value=4.4 Score=22.02 Aligned_cols=12 Identities=42% Similarity=0.969 Sum_probs=6.6
Q ss_pred eecccccccccC
Q psy9360 163 YSCHVCGRSFIS 174 (236)
Q Consensus 163 ~~C~~C~~~f~~ 174 (236)
|.|+.||..|..
T Consensus 4 y~C~~CG~~~~~ 15 (46)
T PRK00398 4 YKCARCGREVEL 15 (46)
T ss_pred EECCCCCCEEEE
Confidence 555555555544
No 91
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=68.28 E-value=2.9 Score=24.01 Aligned_cols=41 Identities=17% Similarity=0.403 Sum_probs=15.9
Q ss_pred CcccccCcccccccchhhHHHhHhhcCCCCCeeccc----cccccc
Q psy9360 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV----CGRSFI 173 (236)
Q Consensus 132 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~ 173 (236)
+..|+. .|+..-..+..|..|+...-..++..|+. |+..+.
T Consensus 9 ~v~C~~-~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~ 53 (60)
T PF02176_consen 9 PVPCPN-GCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVP 53 (60)
T ss_dssp EEE-TT---S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEE
T ss_pred EeeCCC-CCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccc
Confidence 344542 23333333445555555443444555555 555444
No 92
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=68.17 E-value=4.2 Score=23.45 Aligned_cols=8 Identities=63% Similarity=1.817 Sum_probs=3.9
Q ss_pred Ceeccccc
Q psy9360 162 PYSCHVCG 169 (236)
Q Consensus 162 ~~~C~~C~ 169 (236)
+|+|+.||
T Consensus 48 ~Y~CP~CG 55 (59)
T PRK14890 48 PYTCPKCG 55 (59)
T ss_pred ceECCCCC
Confidence 35555554
No 93
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=67.51 E-value=5.3 Score=22.13 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=13.2
Q ss_pred eecccccccccCc-----hHHHhHHH
Q psy9360 163 YSCHVCGRSFISN-----THKNNHLR 183 (236)
Q Consensus 163 ~~C~~C~~~f~~~-----~~l~~H~~ 183 (236)
-.|..|++.+... +.|.+|+.
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence 4577777666544 46666665
No 94
>KOG4377|consensus
Probab=67.17 E-value=3.1 Score=34.02 Aligned_cols=28 Identities=21% Similarity=0.597 Sum_probs=24.4
Q ss_pred CeeccccccccccCChhhHHHHHHhhcC
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
-+.|.++.|+..|...+.+..|.|.|..
T Consensus 401 hfhc~r~Gc~~tl~s~sqm~shkrkheR 428 (480)
T KOG4377|consen 401 HFHCDRLGCEATLYSVSQMASHKRKHER 428 (480)
T ss_pred eeeecccCCceEEEehhhhhhhhhhhhh
Confidence 3788888999999999999999998853
No 95
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=67.00 E-value=3.9 Score=29.34 Aligned_cols=23 Identities=39% Similarity=0.951 Sum_probs=15.1
Q ss_pred CeecccccccccCchHHHhHHHHhcCCCCeeccccccc
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCK 199 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~ 199 (236)
.|+|++||..+. ++-|-.||+ ||
T Consensus 134 ~~vC~vCGy~~~-------------ge~P~~CPi--Cg 156 (166)
T COG1592 134 VWVCPVCGYTHE-------------GEAPEVCPI--CG 156 (166)
T ss_pred EEEcCCCCCccc-------------CCCCCcCCC--CC
Confidence 577777776543 355677766 76
No 96
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.04 E-value=2.3 Score=32.05 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=13.6
Q ss_pred CCcccccCccccCCchhHHhhh
Q psy9360 103 RPFGCRYCDKAFKTSGDLSKHS 124 (236)
Q Consensus 103 ~~~~C~~C~~~f~~~~~l~~H~ 124 (236)
+...|++|+..|..+.-.....
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~ 25 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKI 25 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCc
Confidence 4467777777777665444443
No 97
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=65.57 E-value=7.8 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=23.8
Q ss_pred hhccCCceeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCccccC
Q psy9360 68 IFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFK 115 (236)
Q Consensus 68 ~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 115 (236)
......-|.| +.|+..|+....+. ..|.|+.||....
T Consensus 103 ~e~~~~~Y~C--p~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 103 FETNNMFFIC--PNMCVRFTFNEAME---------LNFTCPRCGAMLD 139 (158)
T ss_pred hccCCCeEEC--CCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence 3444556777 77887777766663 2477777776643
No 98
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=63.45 E-value=5.6 Score=26.96 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=8.4
Q ss_pred CCeecccccccccCc
Q psy9360 161 KPYSCHVCGRSFISN 175 (236)
Q Consensus 161 ~~~~C~~C~~~f~~~ 175 (236)
.|..|+.||..|.-.
T Consensus 25 ~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 25 RPAVSPYTGEQFPPE 39 (129)
T ss_pred CCccCCCcCCccCcc
Confidence 455666666655443
No 99
>PHA00626 hypothetical protein
Probab=62.26 E-value=3.6 Score=23.33 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=9.9
Q ss_pred CcccCCccccccCc
Q psy9360 218 QTFHCNLCNKTYKH 231 (236)
Q Consensus 218 ~~~~C~~C~~~f~~ 231 (236)
..|+|+.||..|+.
T Consensus 22 nrYkCkdCGY~ft~ 35 (59)
T PHA00626 22 DDYVCCDCGYNDSK 35 (59)
T ss_pred cceEcCCCCCeech
Confidence 56778888776653
No 100
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.72 E-value=1.8 Score=32.60 Aligned_cols=18 Identities=33% Similarity=0.855 Sum_probs=10.9
Q ss_pred CCeecccccccccCchHH
Q psy9360 161 KPYSCHVCGRSFISNTHK 178 (236)
Q Consensus 161 ~~~~C~~C~~~f~~~~~l 178 (236)
+.+.|++|+..|.....+
T Consensus 4 k~~~CPvC~~~F~~~~vr 21 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVR 21 (214)
T ss_pred CceECCCCCCeeeeeEEE
Confidence 346677777777665433
No 101
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=61.13 E-value=8.9 Score=27.96 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccccCC
Q psy9360 160 SKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVD 204 (236)
Q Consensus 160 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 204 (236)
..-|.|+.|+..|+...++. ..|.|+. ||.....
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~--Cg~~L~~ 148 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAME---------YGFRCPQ--CGEMLEE 148 (178)
T ss_pred CCEEECCCCCcEEeHHHHhh---------cCCcCCC--CCCCCee
Confidence 44578888887777766542 2488865 8766544
No 102
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=60.33 E-value=9.9 Score=27.71 Aligned_cols=36 Identities=22% Similarity=0.584 Sum_probs=22.5
Q ss_pred ccCCceeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCccccCC
Q psy9360 70 EKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKT 116 (236)
Q Consensus 70 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 116 (236)
....-|.| +.|+..|+....+. ..|.|+.||.....
T Consensus 113 ~~~~~Y~C--p~C~~rytf~eA~~---------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 113 ENNMFFFC--PNCHIRFTFDEAME---------YGFRCPQCGEMLEE 148 (178)
T ss_pred cCCCEEEC--CCCCcEEeHHHHhh---------cCCcCCCCCCCCee
Confidence 34456777 77777777665542 24777777766543
No 103
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=60.17 E-value=17 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.463 Sum_probs=21.7
Q ss_pred ccCCceeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCcccc
Q psy9360 70 EKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAF 114 (236)
Q Consensus 70 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 114 (236)
.....|.| +.|+..|.....+.. .. ....|.|+.|+...
T Consensus 95 ~~~~~Y~C--p~C~~~y~~~ea~~~---~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKC--PNCQSKYTFLEANQL---LD-MDGTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEEC--cCCCCEeeHHHHHHh---cC-CCCcEECCCCCCEE
Confidence 34456777 777777775433322 01 12337777777665
No 104
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=59.90 E-value=9.9 Score=20.28 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=4.2
Q ss_pred eeccccccccc
Q psy9360 163 YSCHVCGRSFI 173 (236)
Q Consensus 163 ~~C~~C~~~f~ 173 (236)
.+|..|++.+.
T Consensus 17 a~C~~C~~~~~ 27 (45)
T PF02892_consen 17 AKCKYCGKVIK 27 (45)
T ss_dssp EEETTTTEE--
T ss_pred EEeCCCCeEEe
Confidence 44444444443
No 105
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=59.57 E-value=40 Score=23.99 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=35.2
Q ss_pred Ceeccccc-ccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhcC
Q psy9360 162 PYSCHVCG-RSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 162 ~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
...|+.|. .++.-. ...-.+.+.+.|+-.|..+.|... .+...|++|.+..|.
T Consensus 80 ~L~CPLCRG~V~GWt--vve~AR~~LN~K~RsC~~e~C~F~-GtY~eLrKHar~~HP 133 (162)
T PF07800_consen 80 ELACPLCRGEVKGWT--VVEPARRFLNAKKRSCSQESCSFS-GTYSELRKHARSEHP 133 (162)
T ss_pred cccCccccCceeceE--EchHHHHHhccCCccCcccccccc-cCHHHHHHHHHhhCC
Confidence 47899985 333322 234467777888888877666642 457789999997654
No 106
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=59.06 E-value=4.1 Score=18.82 Aligned_cols=9 Identities=33% Similarity=0.888 Sum_probs=5.2
Q ss_pred CcccCCccc
Q psy9360 218 QTFHCNLCN 226 (236)
Q Consensus 218 ~~~~C~~C~ 226 (236)
.+|.|+.||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 446666665
No 107
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=55.75 E-value=4.4 Score=21.12 Aligned_cols=11 Identities=27% Similarity=1.072 Sum_probs=8.3
Q ss_pred ccCCccccccC
Q psy9360 220 FHCNLCNKTYK 230 (236)
Q Consensus 220 ~~C~~C~~~f~ 230 (236)
|+|..||..|.
T Consensus 6 y~C~~Cg~~fe 16 (41)
T smart00834 6 YRCEDCGHTFE 16 (41)
T ss_pred EEcCCCCCEEE
Confidence 67888887775
No 108
>KOG4124|consensus
Probab=55.62 E-value=2.7 Score=33.59 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=21.6
Q ss_pred hhhhhccCCceeecCCCCCcccCChHHHHHHH
Q psy9360 65 DEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHA 96 (236)
Q Consensus 65 h~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~ 96 (236)
++...+..++|+| .|++++.....|+.|.
T Consensus 204 ~~T~~t~~~p~k~---~~~~~~~T~~~l~~HS 232 (442)
T KOG4124|consen 204 SSTAETTGTPKKM---PESLVMDTSSPLSDHS 232 (442)
T ss_pred ccccccccCCccC---cccccccccchhhhcc
Confidence 4555566778888 5888888888888874
No 109
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=55.19 E-value=4.3 Score=21.63 Aligned_cols=12 Identities=17% Similarity=0.888 Sum_probs=8.5
Q ss_pred ccCCccccccCc
Q psy9360 220 FHCNLCNKTYKH 231 (236)
Q Consensus 220 ~~C~~C~~~f~~ 231 (236)
|+|..||..|.-
T Consensus 6 y~C~~Cg~~fe~ 17 (42)
T PF09723_consen 6 YRCEECGHEFEV 17 (42)
T ss_pred EEeCCCCCEEEE
Confidence 678888876643
No 110
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=54.02 E-value=7.9 Score=19.81 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=8.7
Q ss_pred cCCccccccCccCC
Q psy9360 221 HCNLCNKTYKHQQS 234 (236)
Q Consensus 221 ~C~~C~~~f~~~~~ 234 (236)
.|..|+|.|...+.
T Consensus 4 ~CprC~kg~Hwa~~ 17 (36)
T PF14787_consen 4 LCPRCGKGFHWASE 17 (36)
T ss_dssp C-TTTSSSCS-TTT
T ss_pred cCcccCCCcchhhh
Confidence 58888888876653
No 111
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=52.35 E-value=13 Score=28.59 Aligned_cols=70 Identities=16% Similarity=0.416 Sum_probs=35.3
Q ss_pred CCCCCeecccccccccCchHHHhHHHHh--cCCCCeeccccccccccCChhhH-------HHHHHhh-----cCCcccCC
Q psy9360 158 LDSKPYSCHVCGRSFISNTHKNNHLRIH--YGLKPYVCHVEGCKRKFVDLSSL-------KKHTKIH-----TQQTFHCN 223 (236)
Q Consensus 158 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~~~C~~~f~~~~~l-------~~H~~~h-----~~~~~~C~ 223 (236)
+|.+.|+|..|....--. .--.|+..- .....|+|.. |++. .+.+-| ..|++.. .++++.|+
T Consensus 138 hGGrif~CsfC~~flCED-DQFEHQAsCQvLe~E~~KC~S--CNrl-Gq~sCLRCK~cfCddHvrrKg~ky~k~k~~PCP 213 (314)
T PF06524_consen 138 HGGRIFKCSFCDNFLCED-DQFEHQASCQVLESETFKCQS--CNRL-GQYSCLRCKICFCDDHVRRKGFKYEKGKPIPCP 213 (314)
T ss_pred CCCeEEEeecCCCeeecc-chhhhhhhhhhhhcccccccc--cccc-cchhhhheeeeehhhhhhhcccccccCCCCCCC
Confidence 455678888776544332 223555422 1223455543 5542 222222 2355432 23889999
Q ss_pred ccccccCc
Q psy9360 224 LCNKTYKH 231 (236)
Q Consensus 224 ~C~~~f~~ 231 (236)
.||..-+.
T Consensus 214 KCg~et~e 221 (314)
T PF06524_consen 214 KCGYETQE 221 (314)
T ss_pred CCCCcccc
Confidence 99854433
No 112
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=49.68 E-value=9.6 Score=19.01 Aligned_cols=7 Identities=43% Similarity=1.222 Sum_probs=3.2
Q ss_pred eeccccc
Q psy9360 163 YSCHVCG 169 (236)
Q Consensus 163 ~~C~~C~ 169 (236)
.+|+.||
T Consensus 18 irC~~CG 24 (32)
T PF03604_consen 18 IRCPECG 24 (32)
T ss_dssp SSBSSSS
T ss_pred EECCcCC
Confidence 3444444
No 113
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=47.31 E-value=8 Score=23.48 Aligned_cols=7 Identities=29% Similarity=1.027 Sum_probs=2.9
Q ss_pred ccccccC
Q psy9360 197 GCKRKFV 203 (236)
Q Consensus 197 ~C~~~f~ 203 (236)
+||..|.
T Consensus 34 eCg~tF~ 40 (72)
T PRK09678 34 NCSATFI 40 (72)
T ss_pred CCCCEEE
Confidence 3444443
No 114
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=46.33 E-value=14 Score=25.49 Aligned_cols=22 Identities=36% Similarity=0.821 Sum_probs=11.1
Q ss_pred eeccccccccccCChhhHHHHHHhhcC
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
..|- +||+.|.. |++|++.|+|
T Consensus 73 i~cl--ecGk~~k~---LkrHL~~~~g 94 (132)
T PF05443_consen 73 IICL--ECGKKFKT---LKRHLRTHHG 94 (132)
T ss_dssp EE-T--BT--EESB---HHHHHHHTT-
T ss_pred eEEc--cCCcccch---HHHHHHHccC
Confidence 5663 37776654 3777777765
No 115
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=45.69 E-value=8.1 Score=22.93 Aligned_cols=9 Identities=44% Similarity=1.556 Sum_probs=2.5
Q ss_pred ecccccccc
Q psy9360 164 SCHVCGRSF 172 (236)
Q Consensus 164 ~C~~C~~~f 172 (236)
.|..|++.|
T Consensus 11 ~C~~C~~~F 19 (69)
T PF01363_consen 11 NCMICGKKF 19 (69)
T ss_dssp B-TTT--B-
T ss_pred cCcCcCCcC
Confidence 455555555
No 116
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=43.86 E-value=15 Score=20.72 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=5.4
Q ss_pred ecccccccccC
Q psy9360 164 SCHVCGRSFIS 174 (236)
Q Consensus 164 ~C~~C~~~f~~ 174 (236)
.|..|++.|..
T Consensus 4 ~C~~C~~~F~~ 14 (57)
T cd00065 4 SCMGCGKPFTL 14 (57)
T ss_pred cCcccCccccC
Confidence 34555555543
No 117
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=42.66 E-value=11 Score=19.68 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=8.2
Q ss_pred cccCCccccccC
Q psy9360 219 TFHCNLCNKTYK 230 (236)
Q Consensus 219 ~~~C~~C~~~f~ 230 (236)
+|+|..|++.|=
T Consensus 12 ~f~C~~C~~~FC 23 (39)
T smart00154 12 GFKCRHCGNLFC 23 (39)
T ss_pred CeECCccCCccc
Confidence 667777777664
No 118
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=42.21 E-value=7.3 Score=21.61 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=8.8
Q ss_pred CcccCCccccccCcc
Q psy9360 218 QTFHCNLCNKTYKHQ 232 (236)
Q Consensus 218 ~~~~C~~C~~~f~~~ 232 (236)
+.+.|..||..|...
T Consensus 3 k~l~C~dCg~~FvfT 17 (49)
T PF13451_consen 3 KTLTCKDCGAEFVFT 17 (49)
T ss_pred eeEEcccCCCeEEEe
Confidence 445666666666543
No 119
>KOG2636|consensus
Probab=41.33 E-value=22 Score=29.74 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=24.4
Q ss_pred hhcCCCCCeeccccc-ccccCchHHHhHHH
Q psy9360 155 RCHLDSKPYSCHVCG-RSFISNTHKNNHLR 183 (236)
Q Consensus 155 ~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~ 183 (236)
+.|.-...|.|.+|| +++.....|.+|..
T Consensus 394 KLHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 394 KLHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred hhcCCCcccceeeccCccccCcHHHHHHhH
Confidence 556667789999999 88999999999975
No 120
>PF14353 CpXC: CpXC protein
Probab=41.13 E-value=19 Score=24.46 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=7.0
Q ss_pred eeccccccccc
Q psy9360 163 YSCHVCGRSFI 173 (236)
Q Consensus 163 ~~C~~C~~~f~ 173 (236)
..|+.|+..|.
T Consensus 2 itCP~C~~~~~ 12 (128)
T PF14353_consen 2 ITCPHCGHEFE 12 (128)
T ss_pred cCCCCCCCeeE
Confidence 35777776664
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=41.11 E-value=10 Score=34.09 Aligned_cols=49 Identities=20% Similarity=0.436 Sum_probs=28.9
Q ss_pred eecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhcCCcccCCccccc
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFHCNLCNKT 228 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~ 228 (236)
..|..||..+.=. +-..-+..|...+...|+. ||.. ...|..|+.||-.
T Consensus 436 l~C~~Cg~v~~Cp-~Cd~~lt~H~~~~~L~CH~--Cg~~--------------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYIAECP-NCDSPLTLHKATGQLRCHY--CGYQ--------------EPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCcccCC-CCCcceEEecCCCeeEeCC--CCCC--------------CCCCCCCCCCCCC
Confidence 4577777776422 1111233444456688977 8832 2278889999843
No 122
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=39.81 E-value=4.8 Score=28.53 Aligned_cols=13 Identities=31% Similarity=0.859 Sum_probs=6.9
Q ss_pred eecccccccccCc
Q psy9360 163 YSCHVCGRSFISN 175 (236)
Q Consensus 163 ~~C~~C~~~f~~~ 175 (236)
+.|+.||..|...
T Consensus 29 ~~c~~c~~~f~~~ 41 (154)
T PRK00464 29 RECLACGKRFTTF 41 (154)
T ss_pred eeccccCCcceEe
Confidence 4555555555543
No 123
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=39.58 E-value=8.5 Score=20.56 Aligned_cols=11 Identities=36% Similarity=1.204 Sum_probs=5.9
Q ss_pred cccCCcccccc
Q psy9360 219 TFHCNLCNKTY 229 (236)
Q Consensus 219 ~~~C~~C~~~f 229 (236)
++.|+.|++.|
T Consensus 13 ~~~C~~C~~~F 23 (43)
T PF01428_consen 13 PFKCKHCGKSF 23 (43)
T ss_dssp HEE-TTTS-EE
T ss_pred CeECCCCCccc
Confidence 56677777666
No 124
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=39.16 E-value=17 Score=20.88 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=16.2
Q ss_pred CCeecccccccccCchHHHhHHHHhcCCCCeecccccc
Q psy9360 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGC 198 (236)
Q Consensus 161 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C 198 (236)
.|++...||-+|... ++...+ .+.+..+|++..|
T Consensus 23 ~PV~s~~C~H~fek~-aI~~~i---~~~~~~~CPv~GC 56 (57)
T PF11789_consen 23 DPVKSKKCGHTFEKE-AILQYI---QRNGSKRCPVAGC 56 (57)
T ss_dssp SEEEESSS--EEEHH-HHHHHC---TTTS-EE-SCCC-
T ss_pred CCcCcCCCCCeecHH-HHHHHH---HhcCCCCCCCCCC
Confidence 456667777777654 333444 2345577766444
No 125
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=38.05 E-value=28 Score=26.25 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=14.6
Q ss_pred CeeccccccccccCChhhHHHHHHhhc
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKIHT 216 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~h~ 216 (236)
-|.|++ |+|.|.-..-.++|+...|
T Consensus 77 K~~C~l--c~KlFkg~eFV~KHI~nKH 101 (214)
T PF04959_consen 77 KWRCPL--CGKLFKGPEFVRKHIFNKH 101 (214)
T ss_dssp EEEE-S--SS-EESSHHHHHHHHHHH-
T ss_pred EECCCC--CCcccCChHHHHHHHhhcC
Confidence 467755 7777777777777776543
No 126
>KOG4377|consensus
Probab=37.65 E-value=15 Score=30.24 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=13.0
Q ss_pred ccccccCchHHHhHHHHhc
Q psy9360 168 CGRSFISNTHKNNHLRIHY 186 (236)
Q Consensus 168 C~~~f~~~~~l~~H~~~h~ 186 (236)
|+..+.+.+.+..|.+.|.
T Consensus 409 c~~tl~s~sqm~shkrkhe 427 (480)
T KOG4377|consen 409 CEATLYSVSQMASHKRKHE 427 (480)
T ss_pred CceEEEehhhhhhhhhhhh
Confidence 6666777777777776663
No 127
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=37.28 E-value=16 Score=17.88 Aligned_cols=7 Identities=43% Similarity=1.217 Sum_probs=3.0
Q ss_pred eeccccc
Q psy9360 163 YSCHVCG 169 (236)
Q Consensus 163 ~~C~~C~ 169 (236)
+.|+.|+
T Consensus 20 ~vCp~C~ 26 (30)
T PF08274_consen 20 LVCPECG 26 (30)
T ss_dssp EEETTTT
T ss_pred EeCCccc
Confidence 4444443
No 128
>COG1773 Rubredoxin [Energy production and conversion]
Probab=36.98 E-value=16 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=10.9
Q ss_pred CeecccccccccCc
Q psy9360 162 PYSCHVCGRSFISN 175 (236)
Q Consensus 162 ~~~C~~C~~~f~~~ 175 (236)
.|+|.+||.+|.-.
T Consensus 3 ~~~C~~CG~vYd~e 16 (55)
T COG1773 3 RWRCSVCGYVYDPE 16 (55)
T ss_pred ceEecCCceEeccc
Confidence 47888998888754
No 129
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=36.81 E-value=20 Score=24.63 Aligned_cols=25 Identities=44% Similarity=0.784 Sum_probs=17.8
Q ss_pred eecccccccccCchHHHhHHHHhcCCCC
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHYGLKP 190 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~ 190 (236)
..|-++|+.|.+ |++|+.+|.+.-|
T Consensus 77 IicLEDGkkfKS---LKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFKS---LKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchHH---HHHHHhcccCCCH
Confidence 567778887763 7788888776543
No 130
>KOG3408|consensus
Probab=36.68 E-value=18 Score=24.26 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=20.3
Q ss_pred CCeecccccccccCchHHHhHHHH
Q psy9360 161 KPYSCHVCGRSFISNTHKNNHLRI 184 (236)
Q Consensus 161 ~~~~C~~C~~~f~~~~~l~~H~~~ 184 (236)
--|.|-.|.+-|.+...|..|.++
T Consensus 56 GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 56 GQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred ceeehhhhhhhhcchHHHHHHHhc
Confidence 348899999999999999999864
No 131
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=36.52 E-value=18 Score=23.39 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=13.9
Q ss_pred hcCCCCCeecccccccccC
Q psy9360 156 CHLDSKPYSCHVCGRSFIS 174 (236)
Q Consensus 156 ~h~~~~~~~C~~C~~~f~~ 174 (236)
.+.+ ++.+|++||..|.-
T Consensus 74 l~~g-~~~rC~eCG~~fkL 91 (97)
T cd00924 74 LEKG-KPKRCPECGHVFKL 91 (97)
T ss_pred EeCC-CceeCCCCCcEEEE
Confidence 4455 78999999998864
No 132
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=35.99 E-value=19 Score=22.77 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=5.6
Q ss_pred eecccccccccC
Q psy9360 163 YSCHVCGRSFIS 174 (236)
Q Consensus 163 ~~C~~C~~~f~~ 174 (236)
-.|..||..|..
T Consensus 59 a~CkkCGfef~~ 70 (97)
T COG3357 59 ARCKKCGFEFRD 70 (97)
T ss_pred hhhcccCccccc
Confidence 344445544443
No 133
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=35.61 E-value=24 Score=19.58 Aligned_cols=10 Identities=50% Similarity=1.321 Sum_probs=4.3
Q ss_pred eecccccccc
Q psy9360 163 YSCHVCGRSF 172 (236)
Q Consensus 163 ~~C~~C~~~f 172 (236)
|.|..||+.|
T Consensus 7 Y~C~~Cg~~~ 16 (49)
T COG1996 7 YKCARCGREV 16 (49)
T ss_pred EEhhhcCCee
Confidence 4444444444
No 135
>KOG4167|consensus
Probab=35.41 E-value=9.5 Score=33.88 Aligned_cols=24 Identities=29% Similarity=0.861 Sum_probs=22.3
Q ss_pred eecccccccccCchHHHhHHHHhc
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHY 186 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~ 186 (236)
|-|.+|++.|-...++..||++|.
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHH
Confidence 889999999999999999999984
No 136
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=35.39 E-value=12 Score=27.59 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=0.0
Q ss_pred hhcCCCCCeeccccc-ccccCchHHHhHHH
Q psy9360 155 RCHLDSKPYSCHVCG-RSFISNTHKNNHLR 183 (236)
Q Consensus 155 ~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~ 183 (236)
+.|.-...|.|.+|| .+|.....|.+|..
T Consensus 94 KLhGL~~ey~CEICGN~~Y~GrkaFekHF~ 123 (196)
T PF11931_consen 94 KLHGLGVEYKCEICGNQSYKGRKAFEKHFQ 123 (196)
T ss_dssp ------------------------------
T ss_pred HHhCCCCeeeeEeCCCcceecHHHHHHhcC
Confidence 345555679999998 66777888999975
No 137
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=34.93 E-value=43 Score=17.68 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=11.7
Q ss_pred eecccccccccC--chHHHhHHHHh
Q psy9360 163 YSCHVCGRSFIS--NTHKNNHLRIH 185 (236)
Q Consensus 163 ~~C~~C~~~f~~--~~~l~~H~~~h 185 (236)
..|+.||-.|.. ...-..|.+.|
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH 38 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYH 38 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHH
Confidence 456666655443 33444555544
No 138
>PLN02294 cytochrome c oxidase subunit Vb
Probab=34.91 E-value=20 Score=25.71 Aligned_cols=16 Identities=31% Similarity=0.754 Sum_probs=13.0
Q ss_pred CCCeecccccccccCc
Q psy9360 160 SKPYSCHVCGRSFISN 175 (236)
Q Consensus 160 ~~~~~C~~C~~~f~~~ 175 (236)
.++.+|++||..|.-.
T Consensus 139 Gkp~RCpeCG~~fkL~ 154 (174)
T PLN02294 139 GKSFECPVCTQYFELE 154 (174)
T ss_pred CCceeCCCCCCEEEEE
Confidence 3689999999998743
No 139
>KOG2593|consensus
Probab=34.04 E-value=44 Score=27.94 Aligned_cols=51 Identities=16% Similarity=0.365 Sum_probs=30.1
Q ss_pred hhhhhhhhhhhccCCceeecCCCCCcccCChHHHHHHHhhcCCCCCcccccCcccc
Q psy9360 59 KKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAF 114 (236)
Q Consensus 59 ~~~~~~h~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 114 (236)
+..+..-++.......|.| +.|.+.|..-..++. .-.....|.|..|+...
T Consensus 113 ~krled~~~d~t~~~~Y~C--p~C~kkyt~Lea~~L---~~~~~~~F~C~~C~gel 163 (436)
T KOG2593|consen 113 RKRLEDRLRDDTNVAGYVC--PNCQKKYTSLEALQL---LDNETGEFHCENCGGEL 163 (436)
T ss_pred HHHHHHHhhhccccccccC--CccccchhhhHHHHh---hcccCceEEEecCCCch
Confidence 3344444444555567888 888888776555432 22234568888887443
No 140
>KOG2807|consensus
Probab=33.61 E-value=54 Score=26.34 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=10.8
Q ss_pred eeccccccccccCChhhHHHHHHhh
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKIH 215 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~h 215 (236)
|.|.. |.-.|-..-+.-.|...|
T Consensus 346 y~C~~--Ck~~FCldCDv~iHesLh 368 (378)
T KOG2807|consen 346 YRCES--CKNVFCLDCDVFIHESLH 368 (378)
T ss_pred EEchh--ccceeeccchHHHHhhhh
Confidence 55533 555554444444444444
No 141
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.00 E-value=16 Score=19.46 Aligned_cols=10 Identities=20% Similarity=1.049 Sum_probs=6.1
Q ss_pred CCccccccCc
Q psy9360 222 CNLCNKTYKH 231 (236)
Q Consensus 222 C~~C~~~f~~ 231 (236)
|..||+.|+.
T Consensus 11 C~~C~rpf~W 20 (42)
T PF10013_consen 11 CPVCGRPFTW 20 (42)
T ss_pred CcccCCcchH
Confidence 6666666654
No 142
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=32.47 E-value=21 Score=24.44 Aligned_cols=15 Identities=27% Similarity=0.840 Sum_probs=9.9
Q ss_pred CcccCCccccccCcc
Q psy9360 218 QTFHCNLCNKTYKHQ 232 (236)
Q Consensus 218 ~~~~C~~C~~~f~~~ 232 (236)
..|+|+.|++.|...
T Consensus 52 qRyrC~~C~~tf~~~ 66 (129)
T COG3677 52 QRYKCKSCGSTFTVE 66 (129)
T ss_pred cccccCCcCcceeee
Confidence 557777777777654
No 143
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=32.28 E-value=13 Score=17.92 Aligned_cols=8 Identities=38% Similarity=1.186 Sum_probs=3.6
Q ss_pred cccccccc
Q psy9360 165 CHVCGRSF 172 (236)
Q Consensus 165 C~~C~~~f 172 (236)
|-.|++.|
T Consensus 3 CiDC~~~F 10 (28)
T PF08790_consen 3 CIDCSKDF 10 (28)
T ss_dssp ETTTTEEE
T ss_pred eecCCCCc
Confidence 44444444
No 144
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=31.63 E-value=30 Score=26.07 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=22.3
Q ss_pred cCCceeecCCCCCcccCChHHHHHHHhhcCCC
Q psy9360 71 KEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQ 102 (236)
Q Consensus 71 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~ 102 (236)
.+..|.| ..|+|.|....-.+.|+..-|.+
T Consensus 74 ~~~K~~C--~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 74 DEDKWRC--PLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SSEEEEE---SSS-EESSHHHHHHHHHHH-HH
T ss_pred cCCEECC--CCCCcccCChHHHHHHHhhcCHH
Confidence 4567899 99999999999999998865544
No 145
>KOG2593|consensus
Probab=31.56 E-value=54 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.395 Sum_probs=19.3
Q ss_pred CCCeecccccccccCchHHHhHHHHhcCCCCeeccccccccc
Q psy9360 160 SKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRK 201 (236)
Q Consensus 160 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~ 201 (236)
...|.|+.|.+.|+....+ +-.-...-.|.|.+ |+-.
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea~---~L~~~~~~~F~C~~--C~ge 162 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEAL---QLLDNETGEFHCEN--CGGE 162 (436)
T ss_pred cccccCCccccchhhhHHH---HhhcccCceEEEec--CCCc
Confidence 4457777777776654332 22222233467744 6644
No 146
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=31.21 E-value=25 Score=27.91 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=13.3
Q ss_pred CeeccccccccccCChhhHHHHHHhh
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKIH 215 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~h 215 (236)
.|.|.. |...|-..-..-.|...|
T Consensus 388 rY~Ce~--CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 388 RYQCEL--CKSTFCSDCDVFIHETLH 411 (421)
T ss_pred ceechh--hhhhhhhhhHHHHHHHHh
Confidence 366633 666665555555555555
No 147
>PF12907 zf-met2: Zinc-binding
Probab=31.12 E-value=22 Score=18.82 Aligned_cols=21 Identities=19% Similarity=0.692 Sum_probs=10.9
Q ss_pred eeccccccccc---CchHHHhHHH
Q psy9360 163 YSCHVCGRSFI---SNTHKNNHLR 183 (236)
Q Consensus 163 ~~C~~C~~~f~---~~~~l~~H~~ 183 (236)
+.|.+|...|. +...|..|..
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~e 25 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAE 25 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHH
Confidence 45666664443 2344666654
No 148
>KOG0717|consensus
Probab=30.58 E-value=30 Score=29.17 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.4
Q ss_pred eecccccccccCchHHHhHHH
Q psy9360 163 YSCHVCGRSFISNTHKNNHLR 183 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~ 183 (236)
+.|.+|.++|.+...+..|..
T Consensus 293 lyC~vCnKsFKseKq~kNHEn 313 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHEN 313 (508)
T ss_pred eEEeeccccccchHHHHhhHH
Confidence 889999999999999999975
No 149
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=29.63 E-value=27 Score=23.94 Aligned_cols=15 Identities=40% Similarity=0.968 Sum_probs=11.6
Q ss_pred CeecccccccccCch
Q psy9360 162 PYSCHVCGRSFISNT 176 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~ 176 (236)
|++|..||+.|...+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 578888888888754
No 150
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=29.01 E-value=22 Score=18.06 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=5.0
Q ss_pred cCCccccccCcc
Q psy9360 221 HCNLCNKTYKHQ 232 (236)
Q Consensus 221 ~C~~C~~~f~~~ 232 (236)
.|..|++.|...
T Consensus 5 ~C~eC~~~f~dS 16 (34)
T PF01286_consen 5 KCDECGKPFMDS 16 (34)
T ss_dssp E-TTT--EES-S
T ss_pred hHhHhCCHHHHH
Confidence 477777776543
No 151
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=28.64 E-value=60 Score=16.30 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=14.0
Q ss_pred CeecccccccccCchHHHhHHHH
Q psy9360 162 PYSCHVCGRSFISNTHKNNHLRI 184 (236)
Q Consensus 162 ~~~C~~C~~~f~~~~~l~~H~~~ 184 (236)
.+.|+.|++.+.. +-+..|+..
T Consensus 4 ~~~C~nC~R~v~a-~RfA~HLek 25 (33)
T PF08209_consen 4 YVECPNCGRPVAA-SRFAPHLEK 25 (33)
T ss_dssp EEE-TTTSSEEEG-GGHHHHHHH
T ss_pred eEECCCCcCCcch-hhhHHHHHH
Confidence 3678888887664 456777654
No 152
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=28.46 E-value=21 Score=18.38 Aligned_cols=11 Identities=18% Similarity=0.842 Sum_probs=5.9
Q ss_pred CcccCCccccc
Q psy9360 218 QTFHCNLCNKT 228 (236)
Q Consensus 218 ~~~~C~~C~~~ 228 (236)
+.|+|..||.-
T Consensus 5 ~~YkC~~CGni 15 (36)
T PF06397_consen 5 EFYKCEHCGNI 15 (36)
T ss_dssp EEEE-TTT--E
T ss_pred cEEEccCCCCE
Confidence 56888888854
No 153
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=27.20 E-value=26 Score=19.91 Aligned_cols=27 Identities=33% Similarity=0.738 Sum_probs=14.9
Q ss_pred eeccccccccccCChhhHHHHHHhhcCCcccCCccccccC
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKIHTQQTFHCNLCNKTYK 230 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~ 230 (236)
.+|.+ |++.|..... -..|+.||..+.
T Consensus 6 ~~C~~--Cg~~~~~~dD-----------iVvCp~CgapyH 32 (54)
T PF14446_consen 6 CKCPV--CGKKFKDGDD-----------IVVCPECGAPYH 32 (54)
T ss_pred ccChh--hCCcccCCCC-----------EEECCCCCCccc
Confidence 45655 7776654432 236666665443
No 154
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=26.90 E-value=49 Score=17.82 Aligned_cols=8 Identities=38% Similarity=1.265 Sum_probs=3.8
Q ss_pred eecccccc
Q psy9360 163 YSCHVCGR 170 (236)
Q Consensus 163 ~~C~~C~~ 170 (236)
+.|+.||.
T Consensus 19 ~~CP~Cg~ 26 (46)
T PF12760_consen 19 FVCPHCGS 26 (46)
T ss_pred CCCCCCCC
Confidence 34555553
No 155
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.81 E-value=71 Score=30.07 Aligned_cols=9 Identities=22% Similarity=0.767 Sum_probs=5.6
Q ss_pred cccCCcccc
Q psy9360 219 TFHCNLCNK 227 (236)
Q Consensus 219 ~~~C~~C~~ 227 (236)
++.|+.||.
T Consensus 663 ~y~CPKCG~ 671 (1121)
T PRK04023 663 EDECEKCGR 671 (1121)
T ss_pred CCcCCCCCC
Confidence 456777764
No 156
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.73 E-value=52 Score=18.42 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=4.1
Q ss_pred ecccccccccC
Q psy9360 164 SCHVCGRSFIS 174 (236)
Q Consensus 164 ~C~~C~~~f~~ 174 (236)
.|++|++.|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 56666666554
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.06 E-value=20 Score=32.14 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=27.7
Q ss_pred eecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhcCCcccCCccccc
Q psy9360 163 YSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFHCNLCNKT 228 (236)
Q Consensus 163 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~ 228 (236)
..|..||..+.=. .-...+..|...+...|++ ||.. ..+..|+.||-.
T Consensus 384 l~C~~Cg~~~~C~-~C~~~L~~h~~~~~l~Ch~--CG~~---------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 384 LACARCRTPARCR-HCTGPLGLPSAGGTPRCRW--CGRA---------------APDWRCPRCGSD 431 (665)
T ss_pred eEhhhCcCeeECC-CCCCceeEecCCCeeECCC--CcCC---------------CcCccCCCCcCC
Confidence 3577777665421 1122233444556788987 8842 146679999853
No 158
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=25.79 E-value=45 Score=21.03 Aligned_cols=8 Identities=50% Similarity=1.252 Sum_probs=3.8
Q ss_pred eecccccc
Q psy9360 163 YSCHVCGR 170 (236)
Q Consensus 163 ~~C~~C~~ 170 (236)
|.|+.|++
T Consensus 36 ~~Cp~C~~ 43 (89)
T COG1997 36 HVCPFCGR 43 (89)
T ss_pred CcCCCCCC
Confidence 44444443
No 159
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=25.72 E-value=35 Score=24.03 Aligned_cols=12 Identities=33% Similarity=1.315 Sum_probs=6.1
Q ss_pred CeecccccccccC
Q psy9360 162 PYSCHVCGRSFIS 174 (236)
Q Consensus 162 ~~~C~~C~~~f~~ 174 (236)
+|.|. |+..|.+
T Consensus 117 ~Y~C~-C~q~~l~ 128 (156)
T COG3091 117 PYRCQ-CQQHYLR 128 (156)
T ss_pred eEEee-cCCccch
Confidence 45555 5555443
No 160
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=25.69 E-value=51 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.477 Sum_probs=23.4
Q ss_pred hhcCCCCCeeccccc-ccccCchHHHhHHHH
Q psy9360 155 RCHLDSKPYSCHVCG-RSFISNTHKNNHLRI 184 (236)
Q Consensus 155 ~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~ 184 (236)
+.|.-.+.|.|.+|| +++.....+.+|..-
T Consensus 367 klhgLd~ef~CEICgNyvy~GR~~FdrHF~E 397 (470)
T COG5188 367 KLHGLDIEFECEICGNYVYYGRDRFDRHFEE 397 (470)
T ss_pred HhcCCCcceeeeecccccccchHHHHhhhhh
Confidence 346666779999999 888888888888753
No 161
>PF15269 zf-C2H2_7: Zinc-finger
Probab=25.61 E-value=80 Score=17.03 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=14.1
Q ss_pred eeecCCCCCcccCChHHHHHHHh
Q psy9360 75 HVCTYEDCNSVFQTQAEWEEHAR 97 (236)
Q Consensus 75 ~~C~~~~C~~~f~~~~~l~~H~~ 97 (236)
|+| -+|......++.|-.||+
T Consensus 21 ykc--fqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 21 YKC--FQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred cee--ecCCcccchHHHHHHHHH
Confidence 445 677777777777777765
No 162
>KOG3408|consensus
Probab=25.04 E-value=48 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=21.9
Q ss_pred cCCceeecCCCCCcccCChHHHHHHHhh
Q psy9360 71 KEKLHVCTYEDCNSVFQTQAEWEEHARM 98 (236)
Q Consensus 71 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~ 98 (236)
+...|.| -.|.+-|.+...|..|.++
T Consensus 54 G~GqfyC--i~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYC--IECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeeh--hhhhhhhcchHHHHHHHhc
Confidence 3456888 8999999999999999764
No 163
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.98 E-value=29 Score=29.97 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=25.8
Q ss_pred ecccccccccCchHHHhHHHHhcCCCCeeccccccccccCChhhHHHHHHhhcCCcccCCcccc
Q psy9360 164 SCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFHCNLCNK 227 (236)
Q Consensus 164 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~ 227 (236)
.|..||....=. .-...+..|.......|+. ||.... -+..|+.||-
T Consensus 215 ~C~~Cg~~~~C~-~C~~~l~~h~~~~~l~Ch~--Cg~~~~--------------~~~~Cp~C~s 261 (505)
T TIGR00595 215 LCRSCGYILCCP-NCDVSLTYHKKEGKLRCHY--CGYQEP--------------IPKTCPQCGS 261 (505)
T ss_pred EhhhCcCccCCC-CCCCceEEecCCCeEEcCC--CcCcCC--------------CCCCCCCCCC
Confidence 566666664421 1122344444556678876 874321 3556888874
No 164
>KOG2071|consensus
Probab=22.62 E-value=58 Score=28.46 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=23.9
Q ss_pred CCCCeeccccccccccCChhhHHHHHHhhcC
Q psy9360 187 GLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217 (236)
Q Consensus 187 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 217 (236)
...|..|.+ ||.+|.......+||..|..
T Consensus 415 ~~~pnqC~~--CG~R~~~~ee~sk~md~H~d 443 (579)
T KOG2071|consen 415 KDSPNQCKS--CGLRFDDSEERSKHMDIHDD 443 (579)
T ss_pred cCCcchhcc--cccccccchhhhhHhhhhhh
Confidence 456789977 99999999998888888854
No 165
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=22.43 E-value=16 Score=18.79 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=8.8
Q ss_pred HHHHHHhhcC-CcccCCcc
Q psy9360 208 LKKHTKIHTQ-QTFHCNLC 225 (236)
Q Consensus 208 l~~H~~~h~~-~~~~C~~C 225 (236)
+.+|=+...| ..|.|..|
T Consensus 17 v~k~G~~~~G~qryrC~~C 35 (36)
T PF03811_consen 17 VKKNGKSPSGHQRYRCKDC 35 (36)
T ss_pred ceeCCCCCCCCEeEecCcC
Confidence 3334444444 55666655
No 166
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=22.30 E-value=78 Score=24.41 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=17.8
Q ss_pred cccccCccccCCchhHHhhhhhhcCCCCcccccCcccccccch
Q psy9360 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTH 147 (236)
Q Consensus 105 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 147 (236)
-.|.-|.+.|.--.. - ..=|..-|.|+ .|+..|...
T Consensus 133 SRCr~C~~rYDPVP~---d--kmwG~aef~C~--~C~h~F~G~ 168 (278)
T PF15135_consen 133 SRCRKCRKRYDPVPC---D--KMWGIAEFHCP--KCRHNFRGF 168 (278)
T ss_pred ccccccccccCCCcc---c--cccceeeeecc--cccccchhh
Confidence 456666666543221 0 01122336676 677777654
No 167
>KOG0717|consensus
Probab=22.18 E-value=56 Score=27.69 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.3
Q ss_pred eeccccccccccCChhhHHHHHHh
Q psy9360 191 YVCHVEGCKRKFVDLSSLKKHTKI 214 (236)
Q Consensus 191 ~~C~~~~C~~~f~~~~~l~~H~~~ 214 (236)
+-|.+ |.++|.+..+|..|..+
T Consensus 293 lyC~v--CnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVV--CNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEee--ccccccchHHHHhhHHH
Confidence 88988 99999999999999864
No 168
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=21.86 E-value=59 Score=21.18 Aligned_cols=13 Identities=38% Similarity=0.922 Sum_probs=6.7
Q ss_pred CeecccccccccC
Q psy9360 162 PYSCHVCGRSFIS 174 (236)
Q Consensus 162 ~~~C~~C~~~f~~ 174 (236)
|+.|..||..|..
T Consensus 2 pH~CtrCG~vf~~ 14 (112)
T COG3364 2 PHQCTRCGEVFDD 14 (112)
T ss_pred Cceeccccccccc
Confidence 3455555555554
No 169
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.88 E-value=1.4e+02 Score=21.85 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=8.4
Q ss_pred CCCeecccccccccCc
Q psy9360 160 SKPYSCHVCGRSFISN 175 (236)
Q Consensus 160 ~~~~~C~~C~~~f~~~ 175 (236)
..-|.|+.|.-.|+..
T Consensus 111 ~~~y~C~~~~~r~sfd 126 (176)
T COG1675 111 NNYYVCPNCHVKYSFD 126 (176)
T ss_pred CCceeCCCCCCcccHH
Confidence 3446666665554443
No 170
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.70 E-value=37 Score=23.46 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=5.3
Q ss_pred eeccccccccc
Q psy9360 163 YSCHVCGRSFI 173 (236)
Q Consensus 163 ~~C~~C~~~f~ 173 (236)
+.|..||..|.
T Consensus 71 ~~C~~CG~~~~ 81 (135)
T PRK03824 71 LKCRNCGNEWS 81 (135)
T ss_pred EECCCCCCEEe
Confidence 44555554443
No 171
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.59 E-value=28 Score=18.10 Aligned_cols=8 Identities=25% Similarity=0.928 Sum_probs=3.3
Q ss_pred ccCCcccc
Q psy9360 220 FHCNLCNK 227 (236)
Q Consensus 220 ~~C~~C~~ 227 (236)
|.|..||.
T Consensus 29 y~C~~C~~ 36 (39)
T PF01096_consen 29 YVCCNCGH 36 (39)
T ss_dssp EEESSSTE
T ss_pred EEeCCCCC
Confidence 44444443
No 172
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=20.56 E-value=75 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCCeecccccccccCchHHHhHHH-HhcC
Q psy9360 160 SKPYSCHVCGRSFISNTHKNNHLR-IHYG 187 (236)
Q Consensus 160 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~ 187 (236)
-+-+.|+.|.+.|.....+..|+. .|-+
T Consensus 55 WrFWiCp~CskkF~d~~~~~~H~~~eH~~ 83 (466)
T PF04780_consen 55 WRFWICPRCSKKFSDAESCLSHMEQEHPA 83 (466)
T ss_pred eeEeeCCcccceeCCHHHHHHHHHHhhhh
Confidence 345789999999999999999997 4543
No 173
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=20.51 E-value=67 Score=17.64 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=9.5
Q ss_pred CcccccccCCCcccccCCcCC
Q psy9360 8 PDQSFRNMFGGDEVCWESTNS 28 (236)
Q Consensus 8 ~~~~~~~~~~~~~~C~~c~~~ 28 (236)
+|-..-+.....+.|+.|+..
T Consensus 23 ~pGt~F~~Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 23 PPGTPFEDLPDDWVCPVCGAP 43 (47)
T ss_dssp -TT--GGGS-TT-B-TTTSSB
T ss_pred CCCCCHHHCCCCCcCcCCCCc
Confidence 333333444667899998864
No 174
>KOG4167|consensus
Probab=20.30 E-value=22 Score=31.79 Aligned_cols=26 Identities=23% Similarity=0.569 Sum_probs=23.0
Q ss_pred CceeecCCCCCcccCChHHHHHHHhhcC
Q psy9360 73 KLHVCTYEDCNSVFQTQAEWEEHARMHA 100 (236)
Q Consensus 73 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~ 100 (236)
..|.| .+|+++|.....+..||+.|.
T Consensus 791 giFpC--reC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 791 GIFPC--RECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred ceeeh--HHHHHHHHHHhhhhHHHHHHH
Confidence 45888 999999999999999999884
No 175
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=20.24 E-value=23 Score=22.95 Aligned_cols=14 Identities=36% Similarity=0.933 Sum_probs=7.8
Q ss_pred CCeecccccccccC
Q psy9360 161 KPYSCHVCGRSFIS 174 (236)
Q Consensus 161 ~~~~C~~C~~~f~~ 174 (236)
+.|.|+.||..-.+
T Consensus 21 k~FtCp~Cghe~vs 34 (104)
T COG4888 21 KTFTCPRCGHEKVS 34 (104)
T ss_pred ceEecCccCCeeee
Confidence 34666666655443
No 176
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=20.24 E-value=80 Score=26.98 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=21.7
Q ss_pred CeeccccccccccCChhhHHHHHHhhc
Q psy9360 190 PYVCHVEGCKRKFVDLSSLKKHTKIHT 216 (236)
Q Consensus 190 ~~~C~~~~C~~~f~~~~~l~~H~~~h~ 216 (236)
-+.|++ |.+.|.+...+..|+...|
T Consensus 57 FWiCp~--CskkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 57 FWICPR--CSKKFSDAESCLSHMEQEH 81 (466)
T ss_pred EeeCCc--ccceeCCHHHHHHHHHHhh
Confidence 489977 9999999999999998543
No 177
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=20.14 E-value=69 Score=18.43 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=19.7
Q ss_pred cccccCcccccccchhhHHHhHhhcCCCCCeeccccccc
Q psy9360 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRS 171 (236)
Q Consensus 133 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 171 (236)
|.|+ ||-.|.-... ....|+..-+|+.|...
T Consensus 23 yPCP---CGDRFeIsLe-----Dl~~GE~VArCPSCSLi 53 (67)
T COG5216 23 YPCP---CGDRFEISLE-----DLRNGEVVARCPSCSLI 53 (67)
T ss_pred ecCC---CCCEeEEEHH-----HhhCCceEEEcCCceEE
Confidence 5566 8888855432 23466777788888643
No 178
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=20.00 E-value=44 Score=17.52 Aligned_cols=10 Identities=20% Similarity=0.979 Sum_probs=4.6
Q ss_pred ccCCcccccc
Q psy9360 220 FHCNLCNKTY 229 (236)
Q Consensus 220 ~~C~~C~~~f 229 (236)
|.|..||..|
T Consensus 29 y~C~~C~~~w 38 (40)
T smart00440 29 YVCTKCGHRW 38 (40)
T ss_pred EEeCCCCCEe
Confidence 4444444433
Done!