RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9360
(236 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 39.3 bits (91), Expect = 0.001
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
+P SC C SF H H+R H G KP C GC + F L +H + H
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNN 89
Score = 31.6 bits (71), Expect = 0.31
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 11/138 (7%)
Query: 107 CRYCDKAFKTSGDLSKH--SAIHNG--DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
+ C+ +F S L++H S H+G +P+ C Y+ CG+ F + + H H P
Sbjct: 292 SKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP 351
Query: 163 YSCH--VCGRSFISNTHKNNHLRI--HYGL---KPYVCHVEGCKRKFVDLSSLKKHTKIH 215
F + + + L K C R F S+L H H
Sbjct: 352 AKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITH 411
Query: 216 TQQTFHCNLCNKTYKHQQ 233
+ K
Sbjct: 412 LSFRPYNCKNPPCSKSFN 429
Score = 31.2 bits (70), Expect = 0.41
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 7/128 (5%)
Query: 109 YCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHF------RTHTQRQIHERCHLDSKP 162
C K F + L +H +H P K + F Q ++ D K
Sbjct: 328 LCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKS 387
Query: 163 YSCHVCGRSFISNTHK-NNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFH 221
+ + H+ H +PY C C + F +L H KIHT
Sbjct: 388 ETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447
Query: 222 CNLCNKTY 229
K++
Sbjct: 448 LCSILKSF 455
>gnl|CDD|153117 cd07908, Mn_catalase_like, Manganese catalase-like protein,
ferritin-like diiron-binding domain. This
uncharacterized bacterial protein family has a
ferritin-like domain similar to that of the manganese
catalase protein of Lactobacillus plantarum and the
bll3758 protein of Bradyrhizobium japonicum.
Ferritin-like, diiron-carboxylate proteins participate
in a range of functions including iron regulation,
mono-oxygenation, and reactive radical production. These
proteins are characterized by the fact that they
catalyze dioxygen-dependent oxidation-hydroxylation
reactions within diiron centers; one exception is
manganese catalase, which catalyzes peroxide-dependent
oxidation-reduction within a dimanganese center.
Diiron-carboxylate proteins are further characterized by
the presence of duplicate metal ligands, glutamates and
histidines (ExxH) and two additional glutamates within a
four-helix bundle. Outside of these conserved residues
there is little obvious homology. Members include
bacterioferritin, ferritin, rubrerythrin, aromatic and
alkene monooxygenase hydroxylases (AAMH), ribonucleotide
reductase R2 (RNRR2), acyl-ACP-desaturases
(Acyl_ACP_Desat), manganese (Mn) catalases,
demethoxyubiquinone hydroxylases (DMQH), DNA protecting
proteins (DPS), and ubiquinol oxidases (AOX), and the
aerobic cyclase system, Fe-containing subunit (ACSF).
Length = 154
Score = 29.6 bits (67), Expect = 0.88
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 15 MFGGDEVCWESTNSGWS--NNGFNQNTRTA----SNDIYAEHLQLSEEIMKKSLQED--- 65
+ GGD S++ ++ + + DI +E +++ + +D
Sbjct: 73 LLGGDPRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIKDPYI 132
Query: 66 ----EKIFEKEKLHV 76
+I EKLH+
Sbjct: 133 RALLNRIILDEKLHI 147
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 26.6 bits (59), Expect = 1.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 151 QIHERCHLDSKPYSCHVCGRSF 172
+ H R H KPY C VCG+SF
Sbjct: 3 RRHMRTHTGEKPYKCPVCGKSF 24
Score = 25.8 bits (57), Expect = 2.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 91 EWEEHARMHAVQRPFGCRYCDKAFKT 116
H R H ++P+ C C K+F +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 25.4 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 119 DLSKHSAIHNGDRPYKCNYTSCGRHFRT 146
+L +H H G++PYKC CG+ F +
Sbjct: 1 NLRRHMRTHTGEKPYKCPV--CGKSFSS 26
Score = 24.7 bits (54), Expect = 5.8
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 207 SLKKHTKIHTQQT-FHCNLCNKTYKH 231
+L++H + HT + + C +C K++
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 29.3 bits (65), Expect = 1.9
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 20/65 (30%)
Query: 187 GLKPYVCHVEGCKRKFVDLSSLKKHTKI-HTQQTFH-------------------CNLCN 226
KPY C VEGC +K+ + + LK H H Q H C +C+
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 227 KTYKH 231
K YK+
Sbjct: 406 KRYKN 410
>gnl|CDD|145459 pfam02318, RPH3A_effect_N, Rabphilin-3A effector domain
N-terminal. This is a the N-terminus of a family of
proteins involved in protein transport in synaptic
vesicles. Rabphilin-3A has been shown to contact Rab3A,
a small G protein important in neurotransmitter
release, in two distinct areas. Most member proteins
carry an FVHE-PHD type zinc-finger domain at the
C-terminus.
Length = 92
Score = 27.4 bits (61), Expect = 2.4
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 27 NSGWSNNGFNQNTRTASNDIYAEHLQLSEEIMKKSLQEDEKIFEKEK 73
+GWS + Q + + + EI+ + + EK+ E+
Sbjct: 27 QAGWSVHTGQQEKQRKTESLTDAEQ----EIINRVIARAEKMESMEQ 69
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 25.9 bits (57), Expect = 2.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIH 185
Y C CG+ F S + H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|177297 PHA00729, PHA00729, NTP-binding motif containing protein.
Length = 226
Score = 28.6 bits (64), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 39 TRTASNDIYAEHLQLSEEIMKKSLQEDEKIFEKEKLHV 76
NDIY E++Q +E +K LQE +I +
Sbjct: 186 KVQIPNDIYKEYMQRRKETERKLLQELRQILSTLNVKN 223
>gnl|CDD|227480 COG5151, SSL1, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit SSL1 [Transcription / DNA replication,
recombination, and repair].
Length = 421
Score = 28.8 bits (64), Expect = 2.9
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 155 RCH--LDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLK--- 209
C + S P SC +C I +TH Y LKP+V EG K +
Sbjct: 313 VCKTKVCSLPISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPF 372
Query: 210 ------KHTKIHTQQTFHCNLCNKTY 229
+ + + C LC T+
Sbjct: 373 PKPPVSPFDESTSSGRYQCELCKSTF 398
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 25.4 bits (56), Expect = 3.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 164 SCHVCGRSFISNTHKNNHLRIH 185
C CG+SF ++ HLR H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 24.6 bits (54), Expect = 5.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 107 CRYCDKAFKTSGDLSKHSAIH 127
C C K+F +L +H H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|219584 pfam07800, DUF1644, Protein of unknown function (DUF1644). This
family consists of sequences found in a number of
hypothetical plant proteins of unknown function. The
region of interest contains nine highly conserved
cysteine residues and is approximately 160 amino acids
in length, and is probably a zinc-binding domain.
Length = 148
Score = 26.9 bits (60), Expect = 6.0
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 155 RCHLDSKPYSCHVCGRSFISNTHK-NNHLRI-HYGLKP 190
R L+SK SC G SF + H R H G +P
Sbjct: 86 RRFLNSKKRSCMQEGCSFSGTYRELRKHARSEHPGARP 123
>gnl|CDD|215724 pfam00110, wnt, wnt family. Wnt genes have been identified in
vertebrates and invertebrates but not in plants,
unicellular eukaryotes or prokaryotes. In humans, 19 WNT
proteins are known. Because of their insolubility little
is known about Wnt protein structure, but all have 23 or
24 Cys residues whose spacing is highly conserved.
Signal transduction by Wnt proteins (including the
Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity
pathway) is mediated by receptors of the Frizzled and
LDL-receptor-related protein (LRP) families.
Length = 308
Score = 27.2 bits (61), Expect = 7.2
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 11/33 (33%)
Query: 135 CNYTS----------CGRHFRTHTQRQIHERCH 157
CN TS CGR + T T ERC+
Sbjct: 253 CNKTSSGTDGCDLLCCGRGYNTRTVVV-VERCN 284
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.132 0.433
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,121,293
Number of extensions: 943895
Number of successful extensions: 986
Number of sequences better than 10.0: 1
Number of HSP's gapped: 979
Number of HSP's successfully gapped: 59
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)