RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9360
(236 letters)
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 118 bits (298), Expect = 2e-33
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNG 129
K ++C++ DC + + + + H H ++PF C+ C+K F + L++HS H G
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLDSK--PYSCHV--CGRSFISNTHKNNHLRIH 185
++ + C+ C F T + H + K Y CH CG++F + H H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 186 YGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT----QQTFHCNLCNKTY----KHQQSI 235
PY C EGC ++F S LK+H K+H ++ C+ KT+ KH
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187
Score = 107 bits (270), Expect = 2e-29
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 95 HARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQI 152
+ V + + C + C A+ + L H H G++P+ C C + F +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 153 HERCHLDSKPYSC--HVCGRSFISNTHKNNHLRIHYGLK--PYVCHVEGCKRKFVDLSSL 208
H H K ++C C F + + H + +K YVCH E C + F + L
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 209 KKHTKIHT 216
K H HT
Sbjct: 123 KVHQFSHT 130
Score = 92.7 bits (231), Expect = 2e-23
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH--VCGRSFISNTHKN 179
A+ + Y C++ CG + + + Q H H KP+ C C + F S H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT---QQTFHCNL--CNKTYKHQQS 234
H H G K + C +GC +F +++KKH + C+ C K +K
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Score = 78.4 bits (194), Expect = 4e-18
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAV--QRPFGCRY--CDKAFKTSGDLSKHSAIH 127
EK C + C+ F T+A ++H + C + C KAFK L H H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 128 NGDRPYKCNYTSCGRHFRTHTQRQIHERCH---LDSKPYSCHVCGRSFISNTHKNNHLRI 184
PY+C + C + F ++ + HE+ H K SC G+++ + +
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW--TLYLKHVAEC 187
Query: 185 H 185
H
Sbjct: 188 H 188
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 115 bits (291), Expect = 7e-33
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 77 CTYEDCNSVFQTQAEWEEH---ARMHAVQRPFGCRYCD-----KAFKTSGDLSKHSAIHN 128
C ++ C+ F +Q + H +H ++ F C + + FK L H H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 129 GDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH--VCGRSFISNTHKNNH-LRIH 185
G++P+KC + C + + + H R H KPY C C ++F + + + H R H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 186 YGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
KPYVC + GC +++ D SSL+KH K
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 80.3 bits (199), Expect = 3e-19
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 72 EKLHVCTYEDCNSV---FQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAI 126
K VC + C+ F+ Q H R H ++P C + C K++ +L H
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Query: 127 HNGDRPYKCNYTSCGRHFRTHTQRQIH-ERCHLDSKPYSCHV--CGRSFISNTHKNNHLR 183
H G++PY C + C + F + R H R H + KPY C + C + + + H++
Sbjct: 92 HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 184 IHYG 187
+G
Sbjct: 152 TVHG 155
Score = 74.9 bits (185), Expect = 3e-17
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 28/117 (23%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSA---IHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLD 159
C + F + L H IH + + C++ G
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHW--GG------------------ 41
Query: 160 SKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
C R F + H+R H G KP+ C EGC++ + L +LK H + HT
Sbjct: 42 -----CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 109 bits (275), Expect = 6e-31
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 103 RPFGC--RYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDS 160
RPF C C+K + L HS H G++PY+C++ C R F Q + H+R H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIH 215
KP+ C C R F + H H R H G KP+ C C++KF L +H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 81.4 bits (202), Expect = 4e-20
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 129 GDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHY 186
RP+ C Y C + + + Q+H R H KPY C C R F + H R H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 187 GLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G+KP+ C + C+RKF LK HT+ HT
Sbjct: 63 GVKPFQC--KTCQRKFSRSDHLKTHTRTHT 90
Score = 67.9 bits (167), Expect = 6e-15
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
EK + C ++DC F + + H R H +PF C+ C + F S L H+ H G++
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCH 157
P+ C + SC + F + H H
Sbjct: 94 PFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 64.5 bits (158), Expect = 1e-13
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 161 KPYSC--HVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-Q 217
+P+ C C + + +H H R H G KPY C + C+R+F LK+H + HT
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 218 QTFHCNLCNKT 228
+ F C C +
Sbjct: 65 KPFQCKTCQRK 75
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 108 bits (273), Expect = 3e-30
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 81 DCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTS- 139
S Q + + Q + CD+ F T +L H + + P + N+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 140 ------CGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKPY 191
G+ F+ + H R H KP+ C CG+ F + + H R H G KP+
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 192 VCHVEGCKRKFVDLSSLKKHTKIHT 216
C EGC R+F + S KKH +HT
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 97.4 bits (243), Expect = 9e-26
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 13/137 (9%)
Query: 68 IFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPF---------GCRYCDKAFKTSG 118
I E + + C+ F T E H M V P C K+FK
Sbjct: 19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 119 DLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNT 176
L H +H G++P+ C + CG+ F +IH+R H KP+ C C R F +++
Sbjct: 77 KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 177 HKNNHLRIHYGLKPYVC 193
+ H+ +H K
Sbjct: 137 DRKKHMHVHTSDKSGPS 153
Score = 56.5 bits (137), Expect = 2e-10
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNG 129
EK C + C +F + H R H ++PF C + CD+ F S D KH +H
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Query: 130 DRPYKCN 136
D+ +
Sbjct: 148 DKSGPSS 154
Score = 45.0 bits (107), Expect = 3e-06
Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 20/94 (21%)
Query: 139 SCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGC 198
S G + Q + C R+F + H+ + + P +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN---- 57
Query: 199 KRKFVDLSSLKKHTKIHTQQTFHCNLCNKTYKHQ 232
H C K++K +
Sbjct: 58 ----------------HVCYWEECPREGKSFKAK 75
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 104 bits (263), Expect = 3e-28
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHE 154
H R H ++P+ C C K+F DL++H H G++PYKC CG+ F + H+
Sbjct: 40 HQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRAHQ 97
Query: 155 RCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKI 214
R H KPY+C CG+SF H H R H G KPY C C + F +L H +
Sbjct: 98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRT 155
Query: 215 HT-QQTFHCNLCNKTYKH 231
HT ++ + C C K++
Sbjct: 156 HTGEKPYKCPECGKSFSR 173
Score = 103 bits (260), Expect = 7e-28
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHE 154
A + ++P+ C C K+F S L++H H G++PYKC CG+ F H+
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQ 69
Query: 155 RCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKI 214
R H KPY C CG+SF + H R H G KPY C C + F L+ L+ H +
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRT 127
Query: 215 HT-QQTFHCNLCNKTYKH 231
HT ++ + C C K++
Sbjct: 128 HTGEKPYKCPECGKSFSR 145
Score = 103 bits (260), Expect = 9e-28
Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
EK + C +C F + + H R H ++P+ C C K+F +L H H G++
Sbjct: 47 EKPYKCP--ECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPY 191
PY C CG+ F + H+R H KPY C CG+SF + + H R H G KPY
Sbjct: 105 PYACP--ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Query: 192 VCHVEGCKRKFVDLSSLKKHTKIHT 216
C C + F +L H + HT
Sbjct: 163 KCPE--CGKSFSRRDALNVHQRTHT 185
Score = 89.4 bits (223), Expect = 2e-22
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 113 AFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSF 172
+ S +A+ G++PY C CG+ F H+R H KPY C CG+SF
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSF 59
Query: 173 ISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTYKH 231
H R H G KPY C C + F ++L+ H + HT ++ + C C K++
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ 117
Score = 84.8 bits (211), Expect = 1e-20
Identities = 42/119 (35%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
EK + C +C F +A H R H ++P+ C C K+F L H H G++
Sbjct: 75 EKPYKCP--ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
PYKC CG+ F H+R H KPY C CG+SF N H R H G K
Sbjct: 133 PYKCP--ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 99.5 bits (249), Expect = 6e-27
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 103 RPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDS 160
R C + C K F+ + + KH H G R + C CG+ F ++ + H+ H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGE 60
Query: 161 KPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
KP+ C CG+ F + + H+RIH G +PYVC +GC +KF ++LK H H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 97.2 bits (243), Expect = 4e-26
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 71 KEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGD 130
+ + C ++ C +F+ + +H H R C C KAF S L +H +H G+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGL 188
+P++C + CG+ F + H R H +PY C C + F +T+ +H+ H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 189 KPY 191
K
Sbjct: 121 KNN 123
Score = 44.8 bits (107), Expect = 2e-06
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNG 129
EK CT+E C F H R+H RP+ C + C+K F S +L H H
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Query: 130 DRPYK 134
+ +
Sbjct: 120 AKNNQ 124
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 90.3 bits (225), Expect = 2e-23
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERC---HLD 159
C C K F + L H+ H G++P++C CG+ + HE +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRS 63
Query: 160 SKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKH-TKIHT 216
+ ++C VC +F H+ H G PY C C ++F+ L+ H K+H+
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHS 119
Score = 77.9 bits (193), Expect = 1e-18
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKH---SAIHN 128
C C+ F ++ + H R H ++PF C C K + +L +H + ++
Sbjct: 5 SSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 129 GDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNH-LRIHYG 187
++ + C+ C FR + ++H H PY C C + F+ +H +++H G
Sbjct: 63 SEQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Query: 188 LK 189
Sbjct: 121 PS 122
Score = 74.8 bits (185), Expect = 2e-17
Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 127 HNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLR--- 183
+G +C +C + F + ++H R H KP+ C CG+ + + H
Sbjct: 2 SSGSSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 184 IHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTY-------KHQQSI 235
++ + + C V C+ F L+ H HT + + C+ C++ + H +
Sbjct: 60 MNRSEQVFTCSV--CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKL 117
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 88.3 bits (220), Expect = 6e-23
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 99 HAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHL 158
P C C K F L H H G +PYKC +C + H R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHS 60
Query: 159 DSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
D +P+ C +C + +++ HLR H G
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 80.5 bits (200), Expect = 5e-20
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 127 HNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHY 186
P+KC CG+ F + + H RCH KPY C C + ++ N HLRIH
Sbjct: 3 SGSSGPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 187 GLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+P+ C + C + S L H + HT
Sbjct: 61 DERPFKCQI--CPYASRNSSQLTVHLRSHT 88
Score = 66.3 bits (163), Expect = 1e-14
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
H C E C F + + + H R H +P+ C+ CD A S L+KH IH+ +R
Sbjct: 6 SGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
P+KC C R +Q +H R H S
Sbjct: 64 PFKCQ--ICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 87.9 bits (219), Expect = 9e-23
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIH 153
++ F C++C + F S +L H H +RPY C+ C + FR + H
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCD--ICHKAFRRQDHLRDH 64
Query: 154 ERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
H KP+ C CG+ F + H +H
Sbjct: 65 RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 87.1 bits (217), Expect = 2e-22
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 117 SGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNT 176
S S + + C CGRHF IHER H D +PY+C +C ++F
Sbjct: 2 SSGSSGGRLPSKTKKEFICK--FCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Query: 177 HKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
H +H IH KP+ C + C + F +L H +H
Sbjct: 60 HLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLHM 97
Score = 61.3 bits (150), Expect = 1e-12
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+K +C + C F H R H +RP+ C C KAF+ L H IH+ ++
Sbjct: 15 KKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
P+KC CG+ F +H+ H+ + +
Sbjct: 73 PFKCQ--ECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 47.4 bits (114), Expect = 1e-07
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C + C+ F+ Q +H +H+ ++PF C+ C K F S L+ H +H
Sbjct: 43 ERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100
Query: 132 PYKCN 136
Sbjct: 101 SPTAA 105
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 84.4 bits (210), Expect = 2e-21
Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
RPY C SC R F H R H KP+ C +C R+F + H H+R H G KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 191 YVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ C + C RKF K+HTKIH
Sbjct: 63 FAC--DICGRKFARSDERKRHTKIHL 86
Score = 76.7 bits (190), Expect = 1e-18
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 101 VQRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHL 158
++RP+ C CD+ F SG L++H IH G +P++C C R+F H R H
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 58
Query: 159 DSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KP++C +CGR F + + H +IH K
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.1 bits (152), Expect = 5e-13
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+ + C E C+ F H R+H Q+PF CR C + F S L+ H H G++
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCH 157
P+ C+ CGR F +R+ H + H
Sbjct: 62 PFACD--ICGRKFARSDERKRHTKIH 85
Score = 35.5 bits (83), Expect = 0.002
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNG 129
+K C C F H R H ++PF C C + F S + +H+ IH
Sbjct: 32 QKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 78.6 bits (195), Expect = 4e-19
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 126 IHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
+GD+ Y C CG+ F +QR H HL +PY C VCG+ F H H++IH
Sbjct: 4 GSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 186 YGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTYKH 231
G+KPY C++ C ++F+ S H + + +++ +
Sbjct: 61 TGIKPYECNI--CAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTE 103
Score = 69.8 bits (172), Expect = 1e-15
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+KL+ C C F +++ + H MH RP+GC C K FK L H IH G +
Sbjct: 8 DKLYPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 132 PYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTH 177
PY+CN C + F H +K Y ++ +
Sbjct: 65 PYECN--ICAKRFMWRD--SFHRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 59.4 bits (145), Expect = 7e-12
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 154 ERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTK 213
K Y C CG+SF + ++ H+ +H GL+PY C V C +KF L H K
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMK 58
Query: 214 IHT-QQTFHCNLCNKTYKH 231
IHT + + CN+C K +
Sbjct: 59 IHTGIKPYECNICAKRFMW 77
Score = 25.5 bits (57), Expect = 7.6
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLS 121
H + + + + ++ + S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPS 108
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 75.3 bits (186), Expect = 4e-18
Identities = 24/88 (27%), Positives = 37/88 (42%)
Query: 99 HAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHL 158
C K + S L H H G++PY C++ CG F + H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 159 DSKPYSCHVCGRSFISNTHKNNHLRIHY 186
+P+ C C R+F + H H++ H+
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 65.2 bits (160), Expect = 2e-14
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGL 188
+ C+Y CG+ + + + H R H KPY C CG F + H R H G
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIH 215
+P+ C C R F L H K H
Sbjct: 64 RPFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 62.9 bits (154), Expect = 2e-13
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 157 HLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ CG+++ ++H HLR H G KPY C +GC KF L +H + HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 217 -QQTFHCNLCNKT 228
+ F C C++
Sbjct: 62 GHRPFQCQKCDRA 74
Score = 44.8 bits (107), Expect = 7e-07
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
EK + C ++ C F E H R H RPF C+ CD+AF S L+ H H
Sbjct: 33 EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 73.6 bits (182), Expect = 2e-17
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
F C+ C K+FK S LS H IH+ RPY C Y CG+ F + + H H KP+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 165 CHVCGRSFISNTHKNNHLRIHYG 187
C VCG++F +++ H R H G
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 67.1 bits (165), Expect = 5e-15
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYV 192
+ C CG+ F+ + H H D++PY C CG+ F + H IH G KP+
Sbjct: 2 FDCK--ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 193 CHVEGCKRKFVDLSSLKKHTKIHT 216
C V C + F S+L H++ HT
Sbjct: 60 CQV--CGKAFSQSSNLITHSRKHT 81
Score = 55.1 bits (134), Expect = 1e-10
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHE 154
H +H+ RP+ C+YC K F D+ KH+ IH G++P+KC CG+ F + H
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ--VCGKAFSQSSNLITHS 77
Query: 155 RCH 157
R H
Sbjct: 78 RKH 80
Score = 33.2 bits (77), Expect = 0.010
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNG 129
H +H ++P C+ C KAF S +L HS H G
Sbjct: 48 HTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 74.2 bits (183), Expect = 2e-17
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 102 QRPFGCR--YCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLD 159
+R C C K + S L H H G++PYKC + C F + H R H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 160 SKPYSCHVCGRSFISNTHKNNHLRIH 185
+KP+ C VC RSF + H H++ H
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 73.4 bits (181), Expect = 3e-17
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 113 AFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGR 170
+ +SG + R + C+Y C + + + + H R H KPY C C
Sbjct: 2 SSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 171 SFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
F + H R H G KP+ C V C R F L H K H
Sbjct: 56 RFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRSDHLALHMKRHQ 99
Score = 63.4 bits (155), Expect = 1e-13
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 144 FRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFV 203
+ R H P C + + ++H HLR H G KPY C EGC +F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 204 DLSSLKKHTKIHT-QQTFHCNLCNKTY 229
L +H + HT + F C +CN+++
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSF 85
Score = 46.5 bits (111), Expect = 3e-07
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
EK + CT+E C+ F E H R H +PF C C+++F S L+ H H
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 73.3 bits (181), Expect = 3e-17
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 127 HNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHY 186
+G C CG+ FR H+ H KPYSC VCG F + H+R H
Sbjct: 2 SSGSSGVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 187 G--LKPYVCHVEGCKRKFVDLSSLKKHTK-IHT 216
G KPY+C C + F L H K +H+
Sbjct: 60 GSVGKPYICQS--CGKGFSRPDHLNGHIKQVHS 90
Score = 72.5 bits (179), Expect = 5e-17
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 104 PFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHL--DSK 161
C C K F+ L++H H+G++PY C CG F+ + H R H K
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 162 PYSCHVCGRSFISNTHKNNHL-RIHYGLK 189
PY C CG+ F H N H+ ++H G
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 71.7 bits (177), Expect = 7e-17
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 117 SGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNT 176
SG + R YKC+ CG+ F + H R H KPY C CG++FI +
Sbjct: 3 SGSSGRSEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 177 HKNNHLRIHYGLKPY 191
H H R+H G P
Sbjct: 61 HLIGHHRVHTGSGPS 75
Score = 61.3 bits (150), Expect = 6e-13
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIH 153
+R + C C K+F S DLSKH H G++PYKC+ CG+ F + H
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGH 65
Query: 154 ERCHLDSKPY 163
R H S P
Sbjct: 66 HRVHTGSGPS 75
Score = 57.5 bits (140), Expect = 2e-11
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHT 212
E + + Y C CG+SF ++ + H R H G KPY C + C + F+ S L H
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHH 66
Query: 213 KIHT 216
++HT
Sbjct: 67 RVHT 70
Score = 39.7 bits (94), Expect = 4e-05
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+ + C ++C F ++ +H R H ++P+ C C KAF L H +H G
Sbjct: 16 RRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Query: 132 PYK 134
P
Sbjct: 74 PSS 76
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 71.8 bits (177), Expect = 8e-17
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 103 RPFGCRY--CDKAFKTSGDLSKHSAI-HNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLD 159
C + C + F L+ H H + + C +CG+ F + H + H D
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 160 SKPYSCHVCGRSF 172
++ Y C G S
Sbjct: 66 TRDYICEFSGPSS 78
Score = 71.4 bits (176), Expect = 1e-16
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 127 HNGDRPYKCNYTSCGRHFRTHTQRQIHER-CHLDSKPYSC--HVCGRSFISNTHKNNHLR 183
+G C++ CGR F H++ H+ K +SC CG+SF H H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 184 IHYGLKPYVCHVEGC 198
+H + Y+C G
Sbjct: 62 LHSDTRDYICEFSGP 76
Score = 60.3 bits (147), Expect = 1e-12
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 161 KPYSCHV--CGRSFISNTHKNNHLRI-HYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT- 216
C CGR F + + N+H + H K + C C + F LK+H K+H+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 217 QQTFHCNLCNKTY 229
+ + C +
Sbjct: 66 TRDYICEFSGPSS 78
Score = 34.4 bits (80), Expect = 0.004
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 185 HYGLKPYVCHVEGCKRKFVDLSSLKKHTKI-HT-QQTFHCN--LCNKTYKH 231
G C GC R F + L H K H Q++F C C K++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNF 52
Score = 34.1 bits (79), Expect = 0.005
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAF 114
+K C C F + +EH ++H+ R + C + +
Sbjct: 36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 70.6 bits (174), Expect = 2e-16
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 120 LSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKN 179
S S IH+G++PY C CG+ F + H+R H KPY C CG++F N+
Sbjct: 2 SSGSSGIHSGEKPYGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 180 NHLRIHYGLKPY 191
NH RIH
Sbjct: 60 NHQRIHTSGPSS 71
Score = 62.9 bits (154), Expect = 1e-13
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIH 153
+ +H+ ++P+GC C KAF S L +H +H G++PYKC CG+ F ++ H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINH 61
Query: 154 ERCHLDSKPY 163
+R H
Sbjct: 62 QRIHTSGPSS 71
Score = 59.4 bits (145), Expect = 2e-12
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHT 212
H KPY C CG++F ++ H R+H G KPY C C + F S L H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQ 62
Query: 213 KIHT 216
+IHT
Sbjct: 63 RIHT 66
Score = 40.9 bits (97), Expect = 1e-05
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
EK + C +C F + +H R+H ++P+ C C KAF + L H IH
Sbjct: 12 EKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Query: 132 PY 133
Sbjct: 70 SS 71
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 70.2 bits (173), Expect = 3e-16
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTF 220
KP+ C +C R+F + H H+R H G KP+ C + C RKF K+H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQHILPI 59
Query: 221 HCNLCNKT 228
+ +
Sbjct: 60 LEDKVEEL 67
Score = 69.8 bits (172), Expect = 5e-16
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKP 162
+PF CR C + F S L+ H H G++P+ C+ CGR F +R+ H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDIQHI-LP 58
Query: 163 YSCHVCGRSFISNTH---KNNHLRIHYGLK 189
N H + L+ G +
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 66.0 bits (162), Expect = 2e-14
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
+P++C C R+F H R H KP++C +CGR F + + H I + P
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILP 58
Query: 191 YVCHVEGCKRKFVDLSSLKKHT---KIHT 216
+ + L+ K
Sbjct: 59 ILEDK--VEELLSKNYHLENEVARLKKLV 85
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 69.9 bits (172), Expect = 5e-16
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 118 GDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCH----LDSKPYSCHVCGRSFI 173
G H G++PY C++ C + FR +H + + + C CG++F
Sbjct: 1 GSSGSSGRTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58
Query: 174 SNTHKNNHLRIHYGLKPYVCH 194
H G
Sbjct: 59 RRNTMARHADNCAGPDGVEGE 79
Score = 64.9 bits (159), Expect = 3e-14
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNG----DRPYKCNYTSCGRHFRTHTQR 150
R H ++P+ C +CDK F+ L H ++ + C+ CG+ F
Sbjct: 6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTM 63
Query: 151 QIHERCHLDSKPYSCHVCGRSF 172
H G S
Sbjct: 64 ARHADNCAGPDGVEGENSGPSS 85
Score = 57.5 bits (140), Expect = 2e-11
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 151 QIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYG----LKPYVCHVEGCKRKFVDLS 206
R H KPY+C C ++F + H + ++ +VC C + F +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRN 61
Query: 207 SLKKHTKIHT-QQTFHCNLCNKTY 229
++ +H +
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMH----AVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
EK + C+ C+ F+ + + H + + V F C C K F +++H+
Sbjct: 13 EKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Query: 128 NGDRPYKCNYTSCGRHF 144
G + + G
Sbjct: 71 AGPDGVEGE--NSGPSS 85
Score = 37.9 bits (89), Expect = 2e-04
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 177 HKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQT-----FHCNLCNKTYKH 231
+ R H G KPY C C + F L H K + F C+ C KT+
Sbjct: 2 SSGSSGRTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 232 QQS 234
+ +
Sbjct: 60 RNT 62
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 69.4 bits (171), Expect = 6e-16
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 117 SGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNT 176
HS + + D+PYKC+ C FR H+ H KPY C++CG F
Sbjct: 2 GHHHHHHSHMTHSDKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59
Query: 177 HKNNHLRIHYGLKPY 191
+ H RIH G KPY
Sbjct: 60 NLKTHTRIHSGEKPY 74
Score = 60.9 bits (149), Expect = 7e-13
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIH 153
H+ M +P+ C C +F+ G+L+ H +H G++PY+CN CG F + H
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTH 64
Query: 154 ERCHLDSKPY 163
R H KPY
Sbjct: 65 TRIHSGEKPY 74
Score = 59.8 bits (146), Expect = 2e-12
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 151 QIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKK 210
H KPY C C SF + +H +H G KPY C C +F ++LK
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKT 63
Query: 211 HTKIHT 216
HT+IH+
Sbjct: 64 HTRIHS 69
Score = 40.5 bits (96), Expect = 2e-05
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 177 HKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNKTYKH 231
H ++H + + KPY C + C+ F +L H +HT ++ + CN+C +
Sbjct: 4 HHHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57
Score = 40.1 bits (95), Expect = 3e-05
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+K + C + C + F+ + H +H ++P+ C C F +L H+ IH+G++
Sbjct: 15 DKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Query: 132 PY 133
PY
Sbjct: 73 PY 74
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 66.9 bits (164), Expect = 6e-15
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 110 CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCG 169
C KAFK L H H PY+C + C + F ++ + HE+ H C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 170 RSFI-SNTHKNNHLRIH 185
+ + H
Sbjct: 69 FVGKTWTLYLKHVAECH 85
Score = 64.6 bits (158), Expect = 4e-14
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKP 190
Y C++ +CG+ F+ H Q ++H+ H PY C C + F + H ++H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 191 YVCHVEGCKRKFVDLSSLKKHTK 213
+ C + KH
Sbjct: 62 KKD--DSCSFVGKTWTLYLKHVA 82
Score = 60.7 bits (148), Expect = 1e-12
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 163 YSCHV--CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQT 219
Y CH CG++F + H H PY C EGC ++F S LK+H K+H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 220 FHCNLCNKTYKH 231
+ C+ K
Sbjct: 62 KKDDSCSFVGKT 73
Score = 43.0 bits (102), Expect = 4e-06
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKH 123
+ + C +E C+ F + + H ++HA C KT KH
Sbjct: 29 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 80
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 61.4 bits (150), Expect = 6e-13
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 118 GDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHL--DSKPYSCHVCGRSFISN 175
G H+G++PY+C C F ++H + + C C
Sbjct: 1 GSSGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARK 58
Query: 176 THKNNHLR-IHYGLKPY 191
+ HLR H P
Sbjct: 59 SDLGVHLRKQHSYSGPS 75
Score = 55.6 bits (135), Expect = 8e-11
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 151 QIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYG--LKPYVCHVEGCKRKFVDLSSL 208
R H KPY C++C F + H+ + + + C C S L
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDL 61
Query: 209 KKHT-KIHT 216
H K H+
Sbjct: 62 GVHLRKQHS 70
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNG--DRPYKCNYTSCGRHFRTHTQRQI 152
R H+ ++P+ C C F SG + H + + C + C + +
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGV 63
Query: 153 HERC-HLDSKPYS 164
H R H S P S
Sbjct: 64 HLRKQHSYSGPSS 76
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT---QQTFHCNLCNKTYKHQQS 234
R H G KPY C++ C +F ++K H FHC C+ +
Sbjct: 6 SGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 59.3 bits (144), Expect = 3e-12
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 148 TQRQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDL 205
+ + + + C CG+++ ++H H R H G KP+ C +GC+R+F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 206 SSLKKHTKIH 215
L +H + H
Sbjct: 63 DELSRHRRTH 72
Score = 52.8 bits (127), Expect = 7e-10
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 95 HARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQI 152
+ R C + C K + S L H+ H G++P+ C++ C R F +
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 153 HERCH 157
H R H
Sbjct: 68 HRRTH 72
Score = 47.4 bits (113), Expect = 6e-08
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 59 KKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRY--CDKAFKT 116
+ + + H+C++ C + + + H R H ++PF C + C++ F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 117 SGDLSKHSAIH 127
S +LS+H H
Sbjct: 62 SDELSRHRRTH 72
Score = 42.8 bits (101), Expect = 3e-06
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 176 THKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCN 223
+ + ++ ++C GC + + S LK HT+ HT ++ F C+
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 57.6 bits (140), Expect = 1e-11
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 126 IHNGDRPYKCNYTSCGRHFRTHTQRQIHER--CHLDSKPYSCHVCGRSFISNTHKNNHLR 183
G+ Y+C C R + + H + K Y C C + F + H++
Sbjct: 4 TKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 184 IHYGL 188
I + +
Sbjct: 62 IIHKI 66
Score = 56.8 bits (138), Expect = 2e-11
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 154 ERCHLDSKPYSCHVCGRSFISNTHKNNHLRI--HYGLKPYVCHVEGCKRKFVDLSSLKKH 211
E Y C VC R + ++ H +K Y C C ++F ++ H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAH 59
Query: 212 TKIHTQ 217
KI +
Sbjct: 60 VKIIHK 65
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 183 RIHYGLKPYVCHVEGCKRKFVDLSSLKKH--TKIHT-QQTFHCNLCNKTY 229
G Y C V C R + +S+ +H T + + C C K +
Sbjct: 3 FTKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF 50
Score = 32.5 bits (75), Expect = 0.012
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHAR--MHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNG 129
E + C + C+ V+ + + H + + C +C K F +++ H I +
Sbjct: 8 EHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 56.3 bits (137), Expect = 2e-11
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHT-KIHT 216
+ + C VC R+F H H R H KPY C + C R F L +H KIH+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHS 55
Score = 49.8 bits (120), Expect = 6e-09
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHL-RIHYG 187
R + C C R F + H R H + KPY C +C R+F H +IH G
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 47.5 bits (114), Expect = 5e-08
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFR------THTQRQIH 153
R F C C +AF L +H H ++PY C C R F H Q+ IH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQK-IH 54
Score = 33.2 bits (77), Expect = 0.007
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 73 KLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSA-IHNGD 130
+ VC E C F Q + H R H ++P+ C C++AF L +H+ IH+G+
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 56.7 bits (138), Expect = 3e-11
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 125 AIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRI 184
+ + P KC+ C + +IHER H +P+ C+ C ++ + H++
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Query: 185 HYGLKPY 191
+G
Sbjct: 60 FHGDMSG 66
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 155 RCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKI 214
P C C S S H RIH +P+ C+ C S+L KH K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKK 59
Query: 215 HT 216
Sbjct: 60 FH 61
Score = 52.5 bits (127), Expect = 8e-10
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 97 RMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERC 156
+ P C C + + L H IH DRP+KCNY C + + H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKK 59
Query: 157 H 157
Sbjct: 60 F 60
Score = 40.6 bits (96), Expect = 2e-05
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
H R+H RPF C YC K +LSKH +GD
Sbjct: 28 HERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 55.1 bits (133), Expect = 1e-10
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIH---YGLKPYVCHVEGCKRKFVDLSSLKKHTKIH 215
C +CG + N H R H + C E C ++F S+ H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAHRSKS 61
Score = 51.3 bits (123), Expect = 4e-09
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 127 HNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDS---KPYSCHVCGRSFISNTHKNNHLR 183
+G +C CG R H+R H ++ + C CG+ F H
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 184 IHYGLKPYVCH 194
+
Sbjct: 60 KSHPALLLAPQ 70
Score = 49.7 bits (119), Expect = 1e-08
Identities = 13/74 (17%), Positives = 18/74 (24%), Gaps = 6/74 (8%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIH---NGDRPYKCNYTSCGRHFRTHTQRQIHER-CHL 158
C C + L+ H H + C + CG+ F H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHP 63
Query: 159 DSKPYSCHVCGRSF 172
G S
Sbjct: 64 ALLLAPQESSGPSS 77
Score = 42.8 bits (101), Expect = 4e-06
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 185 HYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQT----FHCNLCNKTYKHQQS 234
G C + C +SL H + H + F C C K ++ S
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDS 53
Score = 40.1 bits (94), Expect = 4e-05
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQ---RPFGCRYCDKAFKTSGDLSKHSAIHN 128
C E C + +A H R HA F C +C K F+ ++ H + +
Sbjct: 5 SSGLQC--EICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 129 GDRPYKCN 136
Sbjct: 63 PALLLAPQ 70
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 53.5 bits (129), Expect = 5e-10
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHL 182
+ + RPY C SC R F + H R H KP+ C +C R+F + H H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 183 RIH 185
R H
Sbjct: 70 RTH 72
Score = 53.1 bits (128), Expect = 6e-10
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 150 RQIHERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSS 207
+ +PY+C V C R F + H+RIH G KP+ C + C R F
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDH 64
Query: 208 LKKHTKIHT 216
L H + HT
Sbjct: 65 LTTHIRTHT 73
Score = 45.4 bits (108), Expect = 4e-07
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 71 KEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
K + + C E C+ F E H R+H Q+PF CR C + F S L+ H H
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 45.0 bits (107), Expect = 5e-07
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 176 THKNNHLRIHY--GLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCNK 227
H N+L + ++PY C VE C R+F L +H +IHT Q+ F C +C +
Sbjct: 3 PHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMR 57
Score = 41.9 bits (99), Expect = 6e-06
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 95 HARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGR---------- 142
+ RP+ C CD+ F S +L++H IH G +P++C C R
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTT 67
Query: 143 HFRTHT 148
H RTHT
Sbjct: 68 HIRTHT 73
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 1e-09
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPYSC+VCG++F+ + H N HLR+H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF S L++H +H + +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 41.7 bits (99), Expect = 4e-06
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY CN CG+ F H R H
Sbjct: 2 SSGSSGTGEKPYSCN--VCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C+V C + FV + L +H ++HT
Sbjct: 2 SSGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHT 36
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 53.6 bits (128), Expect = 1e-09
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAI--HNGDRPYKCNYT-SCGRHFRTHTQRQ 151
+ + F C+ C A+ T +L+ H H D ++ +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHL--RIHYGLKPY 191
E K C CG SF S + H+ HY
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 39.0 bits (90), Expect = 2e-04
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 151 QIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRI--HYGLKPYVCHVEG-CKRKFVDLSS 207
+++ + + C C ++ + H+ HY + + S
Sbjct: 8 KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS 67
Query: 208 LKKHTKIHTQQT-FHCNLCNKTYKHQQ 233
L + Q C C +++ Q
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQ 94
Score = 38.2 bits (88), Expect = 4e-04
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 9/101 (8%)
Query: 116 TSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIH-----ERCHLDSKPYSCHVCGR 170
+ + +I G ++C C + T + +H + + + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 171 SFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKH 211
S K C C F L L H
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMY--CGHSFESLQDLSVH 99
Score = 31.3 bits (70), Expect = 0.098
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKH 123
E Q+ C YC +F++ DLS H
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 30.1 bits (67), Expect = 0.22
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 174 SNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFHCNLCNKTYKHQQ 233
S + + I G + C + C + L L H + + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 234 S 234
S
Sbjct: 61 S 61
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+ K Y C VCG+ F ++H H R+H G KP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++ + C C K F S L H +H G++P +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++ YKC+ CG+ F + Q H+R H KP
Sbjct: 3 SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.004
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G K Y C V C ++F S L+ H ++HT
Sbjct: 3 SGSSGMGEKCYKCDV--CGKEFSQSSHLQTHQRVHT 36
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG+SFI +H N H RIH G KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K+F L++H IH G++P +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY CN CG+ F + H R H KP
Sbjct: 2 SSGSSGTGEKPYICN--ECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.004
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY+C+ C + F+ S L +H +IHT
Sbjct: 3 SGSSGTGEKPYICNE--CGKSFIQKSHLNRHRRIHT 36
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCH 194
KP+ C CG++F N H +HLRIH G KP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 3e-07
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++PF C+ C KAF+ + L+ H IH G++P +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 1e-06
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH 166
+ +G++P+KC CG+ FR + H R H KP
Sbjct: 2 SSGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.007
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP+ C C + F L H +IHT
Sbjct: 3 SGSSGSGEKPFKCKE--CGKAFRQNIHLASHLRIHT 36
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 4e-09
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C +CG+SF + N H +H KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 45.9 bits (110), Expect = 1e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++PF C C K+F L++HS +H ++P +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 41.3 bits (98), Expect = 6e-06
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P+KC+ CG+ F ++ H H KP
Sbjct: 3 SGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 35.5 bits (83), Expect = 7e-04
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KP+ C + C + F S L +H+ +HT
Sbjct: 2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHT 36
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.9 bits (120), Expect = 4e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCH 194
KP+ C CG+ F N+H ++H R+H G KP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 44.5 bits (106), Expect = 4e-07
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++PF C C K F + L H +H G++P +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH 166
+ +G++P++C CG+ F ++ H+R H KP
Sbjct: 2 SSGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.009
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP+ C C ++F S L H ++HT
Sbjct: 3 SGSSGSGEKPFQCEE--CGKRFTQNSHLHSHQRVHT 36
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 5e-09
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C VCG++F ++H H +H G +P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 47.5 bits (114), Expect = 3e-08
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C+ C KAF+ S L +H ++H+G+RP +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 41.0 bits (97), Expect = 8e-06
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKC CG+ FR + H H +P
Sbjct: 2 SSGSSGTGEKPYKCQ--VCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C V C + F S L +H +H+
Sbjct: 3 SGSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHS 36
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 5e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCH 194
KPY C+ CG+ F N+H NH RIH G+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 44.8 bits (107), Expect = 3e-07
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K F + L+ H IH G +P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH 166
+ G++PYKCN CG+ F ++ H+R H KP
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 32.9 bits (76), Expect = 0.007
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C+ C + F S L H +IHT
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFTQNSHLANHQRIHT 36
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 49.8 bits (120), Expect = 5e-09
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCH 194
K Y C+ CG+ F N+ + H +IH G KP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++ + C C K F + LS+H IH G++P +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH 166
+ G++ YKCN CG+ F ++Q H++ H KP
Sbjct: 2 SSGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G K Y C+ C + F S L +H KIHT
Sbjct: 3 SGSSGTGEKRYKCNE--CGKVFSRNSQLSQHQKIHT 36
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 5e-09
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C VC ++F H H + H G KP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C+ C KAF L++H H G++P +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 6e-06
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C C + F H++ H KP
Sbjct: 2 SSGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.007
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C V C + F + L +H K HT
Sbjct: 3 SGSSGTGEKPYECKV--CSKAFTQKAHLAQHQKTHT 36
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 6e-09
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCH 194
KPY C CG+ + S + + H ++H G +P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 47.1 bits (113), Expect = 5e-08
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K + + +L H +H G+RP +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH 166
+ G++PYKC CG+ + + +H++ H +P
Sbjct: 2 SSGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 33.7 bits (78), Expect = 0.004
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C E C + + +L H K+HT
Sbjct: 3 SGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHT 36
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 6e-09
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+P+ C+ CG+SFI + H H RIH G KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+RP C C K+F S L +H IH G++P +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 6e-06
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G+RP+KCN CG+ F H+R H KP
Sbjct: 3 SGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.011
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G +P+ C+ C + F+ + L +H +IHT
Sbjct: 2 SSGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHT 36
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 6e-09
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG+ F N+H NH RIH G KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 5e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++P+ C C K F + L+ H IH G++P +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 4e-06
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++PYKCN CG+ F ++ H R H KP
Sbjct: 3 SGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.004
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C+ C + F S L H +IHT
Sbjct: 2 SSGSSGSGEKPYKCNE--CGKVFTQNSHLTNHWRIHT 36
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 6e-09
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG+ F N+ ++H R+H G KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++PF C C K F + L H +H G++P +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 4e-06
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++P+KC CG+ F ++Q H+R H KP
Sbjct: 3 SGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KP+ C C ++F S L H ++HT
Sbjct: 2 SSGSSGSGEKPFKCEE--CGKRFTQNSQLHSHQRVHT 36
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 7e-09
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG+ F +N+ +H R H G KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 44.1 bits (105), Expect = 6e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++PF C C K F T+ H H+G++P +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 6e-06
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++P+KC CG+ F T++Q H+R H KP
Sbjct: 3 SGSSGSGEKPFKCE--ECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 34.5 bits (80), Expect = 0.002
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KP+ C E C + F S H + H+
Sbjct: 2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHS 36
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 7e-09
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCH 194
KPY CH CG+ F N+H H IH G KP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 45.5 bits (109), Expect = 2e-07
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K F+ + L++H IH G++P +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH 166
+ G++PYKC+ CG+ FR ++ H+ H KP
Sbjct: 2 SSGSSGTGEKPYKCH--ECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.005
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY CH C + F S L +H IHT
Sbjct: 3 SGSSGTGEKPYKCHE--CGKVFRRNSHLARHQLIHT 36
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 8e-09
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F +TH N H RIH G +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 46.3 bits (111), Expect = 8e-08
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++P+ C C KAF L++H IH G RP +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++PYKC+ CG+ F HT H R H +P
Sbjct: 2 SSGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 32.5 bits (75), Expect = 0.008
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C C + F + L +H +IHT
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHT 36
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 50.0 bits (119), Expect = 8e-09
Identities = 20/76 (26%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 116 TSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISN 175
+SG K IH GDR KC+ CG F I K C C +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCS--KCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQE 52
Query: 176 THKNNHLRIHYGLKPY 191
N G K
Sbjct: 53 AALNKDEGNESGKKTS 68
Score = 38.9 bits (90), Expect = 9e-05
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 148 TQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSS 207
++ HL + C CG FI + + K +C E C++ ++
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMC--EKCRKDSCQEAA 54
Query: 208 LKKHTKIHTQQT 219
L K + +
Sbjct: 55 LNKDEGNESGKK 66
Score = 36.6 bits (84), Expect = 6e-04
Identities = 11/76 (14%), Positives = 18/76 (23%), Gaps = 9/76 (11%)
Query: 88 TQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTH 147
+ + ++H R C C F LS+ + C C +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCE--KCRKDSCQE 52
Query: 148 TQRQIHERCHLDSKPY 163
E K
Sbjct: 53 AALNKDEGNESGKKTS 68
Score = 30.8 bits (69), Expect = 0.069
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 61 SLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDL 120
S + +KI ++ C+ C +F ++ + ++ C C K L
Sbjct: 5 SSGKRQKIHLGDRSQKCS--KCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAAL 55
Query: 121 SKHSAIHNGDRPY 133
+K +G +
Sbjct: 56 NKDEGNESGKKTS 68
Score = 28.1 bits (62), Expect = 0.62
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 174 SNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFHCNLCNKTY 229
S+ +IH G + C C F+ S+L + +T C C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRR------KTPMCEKCRKDS 49
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 8e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG+ F N+H H R+H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 44.0 bits (105), Expect = 6e-07
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K F + L++H +H G +P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKCN CG+ F ++ H R H KP
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 32.1 bits (74), Expect = 0.010
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C+ C + F S L +H ++HT
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFTQNSHLARHRRVHT 36
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 9e-09
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG+ F N+H H IH G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 3e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K F + L++H IH G++P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKCN CG+ F ++ H H KP
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.007
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C+ C + F S L +H IHT
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFTQNSHLARHRGIHT 36
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 9e-09
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C C ++FI H N H R+H G +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 43.3 bits (103), Expect = 1e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++P+ C+ C K F G L++H +H G+R +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G +PY+C C + F H+R H +
Sbjct: 2 SSGSSGSGKKPYECKE--CRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 31.7 bits (73), Expect = 0.018
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C C++ F+ + L +H ++HT
Sbjct: 3 SGSSGSGKKPYECKE--CRKTFIQIGHLNQHKRVHT 36
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG+SFI + + H RIH G P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.5 bits (106), Expect = 4e-07
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K+F L H IH G+ P +
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 41.8 bits (99), Expect = 5e-06
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C+ CG+ F +Q +H+R H P
Sbjct: 2 SSGSSGTGEKPYECS--DCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C C + F+ S L H +IHT
Sbjct: 3 SGSSGTGEKPYECS--DCGKSFIKKSQLHVHQRIHT 36
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG++F + N H RIH G KP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 7e-07
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++PF C C KAF L++H IH G++P +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P+ C CG+ F H H R H KP
Sbjct: 2 SSGSSGTGEKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP+ C C + F D L +H +IHT
Sbjct: 3 SGSSGTGEKPFDCID--CGKAFSDHIGLNQHRRIHT 36
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++F + H R+H G KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+P+ C C KAF + L++H +H G++P +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G +PY+CN CG+ F ++ H+R H KP
Sbjct: 2 SSGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C+ C + F S L +H ++HT
Sbjct: 3 SGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHT 36
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG+S+ H H R+H G KP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++PF C C K++ L++H +H G++P +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P+KC CG+ + H+R H KP
Sbjct: 2 SSGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.018
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP+ C C + + L +H ++HT
Sbjct: 3 SGSSGTGEKPFKCGE--CGKSYNQRVHLTQHQRVHT 36
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 1e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG+ F N+H H IH G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K F + L +H IH G++P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKCN CG+ F ++ H H KP
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C+ C + F S L +H IHT
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLVRHRGIHT 36
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++F + + H R H G KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++P+GC C K F LS H H G++P +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++PY CN CG+ F + H+R H KP
Sbjct: 3 SGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C+ C + F S L H + HT
Sbjct: 3 SGSSGSGEKPYGCNE--CGKTFSQKSILSAHQRTHT 36
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 1e-08
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCH 194
KPY C+ CG+ F N++ + H RIH G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 7e-08
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K F+ + LS+H IH G++P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCH 166
+ G++PYKCN CG+ FR ++ H+R H KP
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C+ C + F S L +H +IHT
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFRHNSYLSRHQRIHT 36
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY+C CG++FI ++ H RIH G KP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF L +H IH G++P +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY C CG+ F +Q Q H+R H KP
Sbjct: 2 SSGSSGTGEKPYNCE--ECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C E C + F+ S L++H +IHT
Sbjct: 3 SGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHT 36
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 48.7 bits (117), Expect = 1e-08
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG+SF + + H RIH G K
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 47.2 bits (113), Expect = 5e-08
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
Q+PF C +C K+F+ G+L H IH G++ +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 41.0 bits (97), Expect = 7e-06
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G +P++C CG+ FR H+R H K
Sbjct: 3 SGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KP+ C C + F +L H +IHT
Sbjct: 2 SSGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHT 36
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG+ + + H R+H G K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 47.5 bits (114), Expect = 4e-08
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++P+ C C K +K DL H +H G++ +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++PYKC CG+ ++ H+R H K
Sbjct: 2 SSGSSGSGEKPYKCV--ECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 32.9 bits (76), Expect = 0.007
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C C + + L H ++HT
Sbjct: 2 SSGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHT 36
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG+ F N+H H IH G KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K F + L++H IH G++P +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 4e-06
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G +PYKCN CG+ F ++ H H KP
Sbjct: 3 SGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.008
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C C + F S L +H IHT
Sbjct: 3 SGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHT 36
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C +CG+SF + + H +IH G KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K+F L H IH G++P +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 6e-06
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C+ CG+ F +Q +H++ H KP
Sbjct: 2 SSGSSGTGEKPYECS--ICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C + C + F S L H +IHT
Sbjct: 3 SGSSGTGEKPYECSI--CGKSFTKKSQLHVHQQIHT 36
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C VC +SF + H RIH G KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 8e-08
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K+F+ L+ H IH G++P +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKC+ C + FR + +H+R H KP
Sbjct: 3 SGSSGTGEKPYKCD--VCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C V C + F SSL H +IHT
Sbjct: 3 SGSSGTGEKPYKCDV--CHKSFRYGSSLTVHQRIHT 36
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F + H RIH G KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF +L++H IH G++P +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 5e-06
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C CG+ F H+R H KP
Sbjct: 3 SGSSGTGEKPYRCG--ECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C C + F ++L +H +IHT
Sbjct: 2 SSGSSGTGEKPYRCGE--CGKAFAQKANLTQHQRIHT 36
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG+ FI H +H G KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K F DL H +H G++P +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 41.8 bits (99), Expect = 5e-06
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKC CG+ F H H KP
Sbjct: 3 SGSSGTGEKPYKCE--ECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 8e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C E C + F+ L H +HT
Sbjct: 2 SSGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHT 36
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++F + H RIH G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF + L++H IH G++P +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKCN CG+ F ++ H+R H KP
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C+ C + F S L +H +IHT
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHT 36
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F TH H R+H G KP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C+ C KAF + L +H +H G++P +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 41.3 bits (98), Expect = 7e-06
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C CG+ F T H+R H KP
Sbjct: 2 SSGSSGTGEKPYECK--ECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C C + F + L +H ++HT
Sbjct: 3 SGSSGTGEKPYECKE--CGKAFSQTTHLIQHQRVHT 36
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG+ F + N H ++H G KP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++PF C C K F L+ H +H G++P +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 5e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P+KC CG+ F + +H + H KP
Sbjct: 2 SSGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KP+ C C + F S+L H K+HT
Sbjct: 2 SSGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHT 36
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHS-AIHNGDRPYKCNYTSCGRHFRT 146
+V +P+ C+ C K F L+ H +H +RP+KC +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSS 53
Score = 44.1 bits (105), Expect = 6e-07
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHL-RIHYGLKPYVCHVEGCKRKF 202
KPY C CG+ F H N H+ ++H +P+ C V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGP 51
Score = 30.6 bits (70), Expect = 0.041
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTK-IHT-QQTFHCNLCNKTY 229
+ KPY+C C + F L H K +HT ++ C +
Sbjct: 2 SSGSSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++F ++++ H IH G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 9e-08
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF+ +L+ H IH G++P +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKCN CG+ FR H+ H+ H KP
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C C + F S+L H IHT
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHT 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+K + CH CGR F +H N H RIH G KP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 6e-06
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ + + ++C+ CGR F + H+R H KP
Sbjct: 2 SSGSSGSSTKSHQCH--ECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
+ + C C + F L++H IH G++P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ K + CH C R F S L +H +IHT
Sbjct: 2 SSGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHT 36
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C VC ++F + H R+H G KP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 44.4 bits (106), Expect = 4e-07
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF L++H +H+G++P +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 41.3 bits (98), Expect = 7e-06
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C+ C + F H H+R H KP
Sbjct: 3 SGSSGTGEKPYECD--VCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 8e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C V C++ F +SL +H ++H+
Sbjct: 3 SGSSGTGEKPYECDV--CRKAFSHHASLTQHQRVHS 36
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG+SF ++ H RIH G KP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
++PF C C K+F S L+ H IH G++P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 4e-06
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P++C CG+ F +Q H+R H KP
Sbjct: 2 SSGSSGTGEKPFECA--ECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.005
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP+ C C + F S L H +IHT
Sbjct: 3 SGSSGTGEKPFECAE--CGKSFSISSQLATHQRIHT 36
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+ Y C CG++FI + + H RIH G KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+R + C C KAF LS H IH G++P +
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 41.7 bits (99), Expect = 4e-06
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G+R Y+C+ CG+ F + +H+R H KP
Sbjct: 2 SSGSSGTGERHYECS--ECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.007
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G + Y C C + F+ S+L H +IH
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHR 36
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+P+ C+ CG+ F +H HLR+H K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 44.4 bits (106), Expect = 4e-07
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ +RPF C C K F L+ H +H+ ++ +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G+RP+KCN CG+ F + H R H K
Sbjct: 2 SSGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 31.0 bits (71), Expect = 0.030
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G +P+ C+ C + F S L H ++H+
Sbjct: 3 SGSSGSGERPFKCNE--CGKGFGRRSHLAGHLRLHS 36
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.0 bits (115), Expect = 2e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F N+ H R+H G +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF + ++H +H G RP +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 41.4 bits (98), Expect = 5e-06
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKC CG+ F ++ H+R H +P
Sbjct: 3 SGSSGTGEKPYKCM--ECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C C + F D SS +H ++HT
Sbjct: 2 SSGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHT 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F + H RIH G KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 5e-08
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++P+ C YC KAF S +L +H IH G++P +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 5e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++PY C+Y CG+ F + H+R H KP
Sbjct: 2 SSGSSGSGEKPYVCDY--CGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 6e-04
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPYVC C + F + L +H +IHT
Sbjct: 3 SGSSGSGEKPYVCDY--CGKAFGLSAELVRHQRIHT 36
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG+SF + H + H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K+F L H H G+R +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKC+ CG+ F ++ +IH++CH +
Sbjct: 3 SGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C C + F S L+ H K HT
Sbjct: 2 SSGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHT 36
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+V++P+ C C K + +L H +H G++ +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 47.5 bits (114), Expect = 3e-08
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG+ + + + H R+H G K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 41.7 bits (99), Expect = 4e-06
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ + ++PYKC CG+ + +H+R H+ K
Sbjct: 3 SGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.5 bits (83), Expect = 8e-04
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ KPY C C + + +L H ++H
Sbjct: 2 SSGSSGSVEKPYKCED--CGKGYNRRLNLDMHQRVHM 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 47.9 bits (115), Expect = 2e-08
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPY 191
KPY C CG F+ H H+ IH G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 40.2 bits (95), Expect = 1e-05
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
S G++PYKC +CG F + H H S P S
Sbjct: 2 SSGSSGGEKPYKCE--TCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 38.7 bits (91), Expect = 5e-05
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPY 133
+ ++P+ C C F L H IH G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 35.6 bits (83), Expect = 6e-04
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C E C +FV ++ L+ H IHT
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHT 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 3e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+PY C VCG++F ++ H +IH G KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 7e-08
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+RP+ C C KAF +L KH IH G++P +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G+RPY C CG+ F + H++ H KP
Sbjct: 3 SGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 3e-04
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G +PY+C V C + F D S+L KH KIHT
Sbjct: 3 SGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHT 36
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 3e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++F + H IH G KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+P+ C C KAF L+ H IH G++P +
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G +PY CN CG+ F ++ H+ H KP
Sbjct: 2 SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G+KPY+C C + F SSL H IHT
Sbjct: 2 SSGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHT 36
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
K + C CG++F + + H +IH G KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ F C C KAF LS H IH G++P +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 41.4 bits (98), Expect = 5e-06
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 121 SKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G + ++C CG+ F + +H++ H KP
Sbjct: 1 GSSGSSGTGGKHFECT--ECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G K + C C + F S+L H KIHT
Sbjct: 2 SSGSSGTGGKHFECTE--CGKAFTRKSTLSMHQKIHT 36
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F S ++ H+R H G KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 44.5 bits (106), Expect = 5e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
A ++P+GC C KAF + L H H+G++P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 41.8 bits (99), Expect = 4e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY C+ CG+ F + + IH R H KP
Sbjct: 3 SGSSGAGEKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.007
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C C + F S L H + H+
Sbjct: 2 SSGSSGAGEKPYGCSE--CGKAFSSKSYLIIHMRTHS 36
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F ++ H +IH G KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
++P+ C C KAF +L H IH G++P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C CG+ F + H++ H KP
Sbjct: 3 SGSSGTGEKPYRCA--ECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C C + F D S+L H KIHT
Sbjct: 3 SGSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHT 36
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG+SF N+ H RIH G P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P CR C K+F + L H IH G+ P +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 41.8 bits (99), Expect = 5e-06
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P++C CG+ F ++Q +H+R H P
Sbjct: 2 SSGSSGTGEKPHECR--ECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP+ C C + F S L H +IHT
Sbjct: 3 SGSSGTGEKPHECRE--CGKSFSFNSQLIVHQRIHT 36
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++F + H IH G KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF L+ H AIH G +P +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+CN CG+ F + H+ H KP
Sbjct: 2 SSGSSGTGEKPYECN--QCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C+ C + F SSL H IHT
Sbjct: 3 SGSSGTGEKPYECNQ--CGKAFSVRSSLTTHQAIHT 36
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
K Y+C CG+SF H R+H G KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++ + C+ C K+F + L KH +H+G++P +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 5e-06
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++ Y C CG+ F HER H KP
Sbjct: 3 SGSSGTGEKLYNCK--ECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G K Y C C + F L KH ++H+
Sbjct: 2 SSGSSGTGEKLYNCKE--CGKSFSRAPCLLKHERLHS 36
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 4e-08
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F + + H + H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF L H H G+R +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKC+ CG+ F + IH++ H +
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C C + F S L H + HT
Sbjct: 2 SSGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHT 36
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 4e-08
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
P+ C CG+ F T+ H +IH G +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ PF C C K F +L H IH G+RP +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 40.9 bits (97), Expect = 8e-06
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G+ P+ C+ CG+ F T IH++ H +P
Sbjct: 3 SGSSGTGENPFICS--ECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G P++C C + F ++L H KIHT
Sbjct: 2 SSGSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHT 36
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 4e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
K + C+ C ++F ++ H RIH G KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
A ++ F C C K F S L+ H IH G++P +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G + +KCN C + F + +H+R H KP
Sbjct: 3 SGSSGAGKKLFKCN--ECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.005
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G K + C+ CK+ F SSL H +IHT
Sbjct: 3 SGSSGAGKKLFKCNE--CKKTFTQSSSLTVHQRIHT 36
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 47.2 bits (113), Expect = 4e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY+C CG+SF + H R+H G KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 7e-08
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C+ C K+F+ + L KH +H+G++P +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 6e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY C CG+ FR + H+R H KP
Sbjct: 3 SGSSGTGEKPYNCK--ECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 34.9 bits (81), Expect = 0.001
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C + C + F S L KH ++H+
Sbjct: 3 SGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHS 36
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 4e-08
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG+SF + H H KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 44.5 bits (106), Expect = 5e-07
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C K+F S L++H H ++P +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 41.0 bits (97), Expect = 9e-06
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C+ CG+ F + H H KP
Sbjct: 2 SSGSSGEGEKPYQCS--ECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 31.4 bits (72), Expect = 0.020
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C C + F L +H HT
Sbjct: 3 SGSSGEGEKPYQCSE--CGKSFSGSYRLTQHWITHT 36
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C CG++F ++ H +IH KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 46.4 bits (111), Expect = 9e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF +L KH IH +P +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY C CG+ F + H++ H KP
Sbjct: 3 SGSSGTGEKPYICA--ECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 36.3 bits (85), Expect = 3e-04
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY+C C + F S+L KH KIHT
Sbjct: 2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHT 36
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 4e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++F S ++ H R H G
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 44.4 bits (106), Expect = 4e-07
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G +PY CN CG+ FR+ + IH R H S
Sbjct: 2 SSGSSGTGMKPYVCN--ECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.9 bits (97), Expect = 9e-06
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
+P+ C C KAF++ L H+ H G+
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.004
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G+KPYVC+ C + F S L HT+ HT
Sbjct: 2 SSGSSGTGMKPYVCNE--CGKAFRSKSYLIIHTRTHT 36
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+PY C+ CG++F ++H HL+ H+ K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 44.8 bits (107), Expect = 4e-07
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ +RP+GC C K F L +H H ++ +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 44.0 bits (105), Expect = 7e-07
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G+RPY CN CG++F H+ H + H K
Sbjct: 3 SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G +PY C+ C + F S L +H K H
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHF 36
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 5e-08
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C VCG++F + H RIH G KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF LS H IH+G +P +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+C+ CG+ F +H+R H KP
Sbjct: 2 SSGSSGTGEKPYECS--VCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C V C + F SL H +IH+
Sbjct: 3 SGSSGTGEKPYECSV--CGKAFSHRQSLSVHQRIHS 36
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 5e-08
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 152 IHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ C ++F + ++ H R H G
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PY+CN C + F T + +H+R H S
Sbjct: 3 SGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 42.1 bits (100), Expect = 3e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
++P+ C C KAF T +L H H G+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.004
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C+ C++ F S+L H + HT
Sbjct: 3 SGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHT 36
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.8 bits (112), Expect = 6e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+PY C CG++F + + H R H G KP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
QRP+ C C KAFKT L H H G++P +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 44.1 bits (105), Expect = 6e-07
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G RPY+C CG+ F+T + H R H KP
Sbjct: 2 SSGSSGTGQRPYECI--ECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.004
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G +PY C C + F SSL H + HT
Sbjct: 3 SGSSGTGQRPYECI--ECGKAFKTKSSLICHRRSHT 36
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 46.8 bits (112), Expect = 6e-08
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLR-IHYGLKPYVC 193
KPY C CG++FI NT H R H G KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 42.2 bits (100), Expect = 3e-06
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHS-AIHNGDRPYKCN 136
++P+ C C KAF + L +H H G++P +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 31.0 bits (71), Expect = 0.034
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHT-KIHT 216
+ G KPY C C + F+ +SL +H HT
Sbjct: 2 SSGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHT 37
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 7e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++F + + H H G KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 44.8 bits (107), Expect = 3e-07
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P+ C C KAF+ L+ H A H+G++P +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 44.8 bits (107), Expect = 4e-07
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++PYKCN CG+ FR + IH+ H KP
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.007
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C+ C + F SSL H H+
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHS 36
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 7e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+ Y C CG++F + H RIH G KP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 1e-07
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+R + C C KAF L H IH G++P +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 40.9 bits (97), Expect = 8e-06
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G+R Y+C+ CG+ F + +H+R H KP
Sbjct: 2 SSGSSGTGERHYECS--ECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G + Y C C + F S+L H +IHT
Sbjct: 3 SGSSGTGERHYECS--ECGKAFARKSTLIMHQRIHT 36
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 46.8 bits (112), Expect = 8e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C C ++F + H R H G+KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 45.2 bits (108), Expect = 2e-07
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+P+GC C K F L H H G +P +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G +PY C+ C + F +Q +H+R H KP
Sbjct: 2 SSGSSGTGVKPYGCS--QCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G+KPY C C + F S L H + HT
Sbjct: 2 SSGSSGTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHT 36
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 8e-08
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C C ++F + ++ H R H G KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 43.2 bits (103), Expect = 1e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
++PF C C KAF T +L H H G++P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 40.9 bits (97), Expect = 9e-06
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P++C+ C + F T + +H+R H KP
Sbjct: 3 SGSSGTGEKPFECS--ECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.007
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KP+ C C++ F S+L H + HT
Sbjct: 2 SSGSSGTGEKPFECSE--CQKAFNTKSNLIVHQRTHT 36
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 8e-08
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
PY CH CG++F +H R H G KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ P+ C C KAF L H H G++P +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G+ PY+C+ CG+ F Q H+R H KP
Sbjct: 3 SGSSGTGENPYECH--ECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.009
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G PY CH C + F L H + H
Sbjct: 3 SGSSGTGENPYECHE--CGKAFSRKYQLISHQRTHA 36
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 1e-07
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
A P+ C C+K+F L H +H ++P +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 46.0 bits (110), Expect = 1e-07
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
PY C C +SF H R+H KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 42.1 bits (100), Expect = 3e-06
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G PYKC+ C + F + +H+R H KP
Sbjct: 3 SGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 31.4 bits (72), Expect = 0.025
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G+ PY C C++ F L H ++HT
Sbjct: 3 SGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHT 36
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+ + C CG+ F+ ++ H RIH G KP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+R C C K F + + +H IH G++P +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G+R ++C+ CG+ F + H R H KP
Sbjct: 2 SSGSSGHGERGHRCS--DCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.003
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ +G + + C C + F+ S+ +H +IHT
Sbjct: 2 SSGSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHT 36
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++ + CR CD F + L H +H G++P +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 45.2 bits (108), Expect = 2e-07
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+ K + C C F + H +H G KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 41.4 bits (98), Expect = 6e-06
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++ +KC C F + ++H+ H+ KP
Sbjct: 3 SGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.011
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G K + C C F SSL+ H +H
Sbjct: 3 SGSSGMGEKTWKCRE--CDMCFSQASSLRLHQNVHV 36
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPY 191
KPY C +CG F +HLRIH G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 41.3 bits (98), Expect = 6e-06
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
S G++PY C CG FR + H R H S P S
Sbjct: 2 SSGSSGGEKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPY 133
+ ++P+ C C F+ L H IH G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C + C +F L +LK H +IHT
Sbjct: 2 SSGSSGGEKPYPCEI--CGTRFRHLQTLKSHLRIHT 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP C CG++F + H R H K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 43.3 bits (103), Expect = 1e-06
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++P C C KAF L H H D+ +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 41.0 bits (97), Expect = 8e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P KC CG+ F +Q +H+R H+D K
Sbjct: 3 SGSSGTGEKPCKCT--ECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 30.6 bits (70), Expect = 0.046
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP C C + F S L H + H
Sbjct: 3 SGSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHV 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 45.3 bits (108), Expect = 2e-07
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPY 191
KPY C CG++F H+R+H G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 41.4 bits (98), Expect = 6e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
S G++PY+C+ CG+ F +H R H S P S
Sbjct: 2 SSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 39.9 bits (94), Expect = 2e-05
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPY 133
+ ++P+ C C KAF G L H +H G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 33.7 bits (78), Expect = 0.003
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KPY C + C + F SL H ++HT
Sbjct: 2 SSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHT 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 45.4 bits (108), Expect = 2e-07
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCN 223
+ G KP+ C GC +F L +H + H+ + +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 44.6 bits (106), Expect = 4e-07
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 95 HARMHAVQRPFGCRY--CDKAFKTSGDLSKHSAIHNGDRPYKCN 136
++PF C + C F S +LS+H H+G +P +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 43.4 bits (103), Expect = 1e-06
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P+ C + CG F + H R H KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 41.1 bits (97), Expect = 8e-06
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 153 HERCHLDSKPYSCHV--CGRSFISNTHKNNHLRIHYGLKPYVC 193
KP++C CG F + + H R H G+KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 33.0 bits (76), Expect = 0.007
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGC 107
EK CT+ C F E H R H+ +P G
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 45.2 bits (108), Expect = 3e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPY C+ CG++FI + H R H G+
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++PY+CN CG+ F + +HER H S
Sbjct: 3 SGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
+ ++P+ C C KAF L H H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G KPY C+ C + F+ S L H + H
Sbjct: 2 SSGSSGSGEKPYECN--ECGKAFIWKSLLIVHERTHA 36
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 44.1 bits (105), Expect = 6e-07
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C C ++F S ++ H + H KP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 43.3 bits (103), Expect = 1e-06
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 99 HAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++PFGC C+KAF + L H H ++P +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 41.8 bits (99), Expect = 4e-06
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
S+ +G++P+ C+ C + F + + +H++ H + KP
Sbjct: 2 SSGSSGEKPFGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 27.1 bits (61), Expect = 0.69
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 183 RIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP+ C C++ F S L H + H
Sbjct: 3 SGSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHA 34
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 45.0 bits (106), Expect = 1e-06
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 23/97 (23%)
Query: 98 MHAVQRPFGCRYCDKAFKTSGDLSKH-SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERC 156
+ Q + CD+ F T +L H + H G + C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV------------------C 60
Query: 157 HLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
+ + C G+SF + NH+R+H G K
Sbjct: 61 YWEE----CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 39.2 bits (91), Expect = 1e-04
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 157 HLDSKPYSCHVCGRSFISNTHKNNHL-RIHYGLKP---YVCHVEGCKRK---FVDLSSLK 209
C R+F + H+ H G +VC+ E C R+ F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 210 KHTKIHT 216
H ++HT
Sbjct: 80 NHIRVHT 86
Score = 35.3 bits (81), Expect = 0.002
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 75 HVCTYEDCNSVFQTQAEWEEH-ARMHAVQRPF--------GCRYCDKAFKTSGDLSKHSA 125
+ C+ F T E H H C K+FK L H
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 126 IHNGDRPYKC 135
+H G++
Sbjct: 84 VHTGEKSGPS 93
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 42.9 bits (102), Expect = 2e-06
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 154 ERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
PY C CG++F +H R H G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 97 RMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
+ + P+ C C KAF L H H G+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 38.6 bits (91), Expect = 5e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
S+ +G+ PY+C+ CG+ F Q H+R H S
Sbjct: 2 SSGSSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 28.6 bits (65), Expect = 0.20
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 183 RIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G PY C C + F L H + H
Sbjct: 3 SGSSGENPYECS--ECGKAFNRKDQLISHQRTHA 34
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
PY C CG+ F +H + H G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 41.3 bits (98), Expect = 5e-06
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
+ P+ C C K F L H H+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G+ PY+C CG+ F Q H++ H S
Sbjct: 2 SSGSSGTGENPYECC--ECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 29.4 bits (67), Expect = 0.11
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G PY C C + F L H K H+
Sbjct: 3 SGSSGTGENPYECCE--CGKVFSRKDQLVSHQKTHS 36
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 4e-06
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
++PF C+ C F S L KH H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.8 bits (99), Expect = 5e-06
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KP+ C CG +F + HLR H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 39.5 bits (93), Expect = 3e-05
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ G++P++C CG +F H R H + P
Sbjct: 3 SGSSGTGEKPFQCK--ECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G KP+ C + C F SL KH + H
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHE 36
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 41.9 bits (99), Expect = 4e-06
Identities = 10/39 (25%), Positives = 11/39 (28%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPY 191
PY C CG+SF H R P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 39.2 bits (92), Expect = 3e-05
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYK 134
+ + P+ C C K+F G L+ H + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 38.8 bits (91), Expect = 4e-05
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
S G+ PY C CG+ F +H+R S P S
Sbjct: 2 SSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 30.7 bits (70), Expect = 0.035
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G PY+C C + F SL H + +
Sbjct: 2 SSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCS 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 41.5 bits (97), Expect = 5e-06
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 96 ARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTS 139
++ C C K F+ L++H H+G++PY +S
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 39.5 bits (92), Expect = 3e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
K +C +CG+ F H N H H G KPY
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 34.5 bits (79), Expect = 0.002
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 127 HNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVC 168
+ C CG+ FR H+ H KPYS
Sbjct: 7 GRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.8 bits (59), Expect = 0.88
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 183 RIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT-QQTFHCNLCN 226
K C + C + F D+ L +H H+ ++ + +
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 25.7 bits (56), Expect = 3.0
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYC 110
K C E C +F+ H H+ ++P+
Sbjct: 10 RKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 41.0 bits (97), Expect = 7e-06
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPY 191
+ Y C CG+SF H RIH G P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 39.9 bits (94), Expect = 2e-05
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
S+ +G R Y+C CG+ FR +HER H S P S
Sbjct: 2 SSGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 96 ARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPY 133
+ + QR + C+ C K+F+ G L+ H IH G P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 26.4 bits (59), Expect = 1.1
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 183 RIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G + Y C C + F SL H +IHT
Sbjct: 3 SGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHT 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 7e-06
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
K ++C CG++F + H R+H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 41.0 bits (97), Expect = 8e-06
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ +G++ + C+ CG++F + +IH+R H+ K
Sbjct: 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 36.4 bits (85), Expect = 3e-04
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCN 136
+ ++ C C K F L H +H G++ +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 31.8 bits (73), Expect = 0.015
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
G K + C C + F +S+L+ H ++H
Sbjct: 3 SGSSGSGEKSHTCDE--CGKNFCYISALRIHQRVHM 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.0 bits (97), Expect = 7e-06
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
DSK Y+C+ CG++F H H +IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 37.2 bits (87), Expect = 2e-04
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 94 EHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
+ + C C KAF L++H IH
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
+ + Y CN CG+ F H++ H S
Sbjct: 2 SSGSSGTDSKSYNCN--ECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.6 bits (75), Expect = 0.009
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQT 219
K Y C C + F + L +H KIHT+++
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKS 39
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.9 bits (95), Expect = 1e-05
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
Y C CG + H+R H ++PY C C F +L KH K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKA 53
Score = 39.7 bits (92), Expect = 3e-05
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 133 YKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
Y C CG + + + H R H D +PY C C SF + + H++ K
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 37.4 bits (86), Expect = 2e-04
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 107 CRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
C C K L KH H RPY C C F+T H + SK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAHSK 56
Score = 34.3 bits (78), Expect = 0.002
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 80 EDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
E+C + + ++H R H RP+ C YC+ +FKT G+L+KH +
Sbjct: 5 EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.5 bits (91), Expect = 1e-04
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 93 EEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQI 152
A + + CR C+ + + H + C Y C F + +Q
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPY--CSLRFFSPELKQE 60
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNH 181
HE + K +C C R+F S+ H
Sbjct: 61 HES-KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 39.1 bits (90), Expect = 2e-04
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 159 DSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
+ + Y C +C S + +H R+ VC C +F ++H +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVC--PYCSLRFFSPELKQEHESKCEYK 68
Query: 219 TFHCNLCNKTYKHQQSI 235
C C +T+K SI
Sbjct: 69 KLTCLECMRTFKSSFSI 85
Score = 33.0 bits (74), Expect = 0.025
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 64 EDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKH 123
E ++++ C CN+ + E H R+ + C YC F + +H
Sbjct: 6 SGASPVENKEVYQCRL--CNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH 61
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHE 154
+ + C C R F++ H+
Sbjct: 62 ES-KCEYKKLTCLE--CMRTFKSSFSIWRHQ 89
Score = 27.6 bits (60), Expect = 1.8
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 82 CNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKH-SAIHNGD 130
C+ F + +EH + C C + FK+S + +H +HN +
Sbjct: 48 CSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.8 bits (89), Expect = 3e-04
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSF-ISNTHKNNHL 182
S + +G + Y N+ H ++ H+ + V ++++L
Sbjct: 4 SDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63
Query: 183 RIHYGLK---PYVCHVEGCKRKFVDLSSLKKHTKIHTQQTFHCNLCNKTYKHQQSIL 236
K +VC + C F SLK+H + T C +C K + S L
Sbjct: 64 YRLLASKAISQFVCPL--CLMPFSSSVSLKQHIRYTE-HTKVCPVCKKEFTSTDSAL 117
Score = 38.0 bits (87), Expect = 5e-04
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 6/94 (6%)
Query: 120 LSKHSAIHNGDRPYKCNYTSCGR--HFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTH 177
H R + + + + C +C F S+
Sbjct: 30 KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVS 89
Query: 178 KNNHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKH 211
H+R VC V CK++F S H
Sbjct: 90 LKQHIRYT--EHTKVCPV--CKKEFTSTDSALDH 119
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.1 bits (84), Expect = 4e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVC 193
KPYSC C +F N H ++H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.1 bits (76), Expect = 0.006
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 99 HAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKC 135
+ ++P+ C C + F + L +H +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.9 bits (73), Expect = 0.014
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 183 RIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQT 219
G KPY C CK F D + L +H K+HT ++
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKS 37
Score = 31.5 bits (72), Expect = 0.019
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 124 SAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYSC 165
S+ +G++PY C C F + + H++ H S
Sbjct: 2 SSGSSGEKPYSCA--ECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 35.4 bits (82), Expect = 7e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
R KP+ C C RSF + H H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 35.0 bits (81), Expect = 9e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
R +PF C CD++F S L+ H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.5 bits (77), Expect = 0.003
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 181 HLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIH 215
R G+KP+ C C R F L H K H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 27.3 bits (61), Expect = 0.45
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 123 HSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHL 158
+ G +P++C C R F +H + H+
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHM 35
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 33.6 bits (76), Expect = 0.002
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+P+ C +C + F G L +H IH G++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.1 bits (67), Expect = 0.053
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 188 LKPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
+KPYVC C+R+F D +L++H +IHT +
Sbjct: 1 MKPYVC--IHCQRQFADPGALQRHVRIHTGE 29
Score = 26.6 bits (58), Expect = 0.81
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KPY C C R F H+RIH G K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 33.7 bits (77), Expect = 0.004
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 153 HERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYG 187
P+ C C R F + H R H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 32.9 bits (75), Expect = 0.006
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 95 HARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
A + PF C CD+ F L +H H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 31.8 bits (72), Expect = 0.017
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 122 KHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSKPYS 164
+ G+ P+KC+ C R F HER H S
Sbjct: 2 SSGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 26.7 bits (59), Expect = 0.86
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 180 NHLRIHYGLKPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+ G P+ C C R F + L +H + H
Sbjct: 2 SSGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHA 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.1 bits (76), Expect = 0.005
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHTQQ 218
K ++CH++GC + + S L+ H + HT +
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 26.9 bits (60), Expect = 0.80
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 70 EKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQR 103
K+K H+C + C V+ + H R H +R
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.2 bits (58), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 161 KPYSCHV--CGRSFISNTHKNNHLRIHYGLK 189
K + CH+ CG+ + +H HLR H G +
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.2 bits (58), Expect = 1.5
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCH 157
+ + C+ CG+ + + + H R H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 24.6 bits (54), Expect = 4.3
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 102 QRPFGCRY--CDKAFKTSGDLSKHSAIHNGDR 131
++ C C K + + L H H G+R
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 32.6 bits (75), Expect = 0.006
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
+P++C C ++F L++H + HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 31.4 bits (72), Expect = 0.017
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 103 RPFGCRY--CDKAFKTSGDLSKHSAIHNGDR 131
RPF C + C K F S +L +H H G++
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.5 bits (67), Expect = 0.076
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 10/28 (35%)
Query: 131 RPYKCNYTSCG----------RHFRTHT 148
RP+ C ++ CG RH RTHT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.8 bits (71), Expect = 0.015
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 100 AVQRPFGCRYCDKAFKTSGDLSKHSAIHNGD 130
A + C+ C K F+ S L +H A+H G+
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 35.2 bits (80), Expect = 0.015
Identities = 10/74 (13%), Positives = 24/74 (32%)
Query: 54 SEEIMKKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKA 113
+ E+ + ++E ++ + E +++ + + C C
Sbjct: 130 ANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAV 189
Query: 114 FKTSGDLSKHSAIH 127
+ DL H A H
Sbjct: 190 LFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.082
Identities = 10/49 (20%), Positives = 13/49 (26%)
Query: 137 YTSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
+ H R Y CHVC S + H+ H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 31.1 bits (70), Expect = 0.023
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHTQQT 219
+PY C GC + FV L +H K H ++
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
Score = 26.1 bits (57), Expect = 1.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 130 DRPYKCNYTSCGRHFRTHTQRQIHERCHLD 159
DRPY C++ C + F + H++ H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 25.7 bits (56), Expect = 2.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 103 RPFGCRY--CDKAFKTSGDLSKHSAIH 127
RP+ C + CDKAF + DL +H H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 30.8 bits (69), Expect = 0.026
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 191 YVCHVEGCKRKFVDLSSLKKHTKIHT 216
YVCH E C R F D L +H KIHT
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHT 28
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 30.4 bits (69), Expect = 0.038
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
+ + C VC R+F H H R H K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.1 bits (63), Expect = 0.27
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
R F C C +AF L +H H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.5 bits (59), Expect = 0.80
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217
+ +VC V C R F LK+H + HT
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTN 27
Score = 24.6 bits (54), Expect = 3.9
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 131 RPYKCNYTSCGRHFRTHTQRQIHERCH 157
R + C C R F + H R H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 30.3 bits (67), Expect = 0.055
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 157 HLDSKPYSCHVCGRSFISNTHKNNHLRIHYG 187
KPYSC VCG F + H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.7 bits (63), Expect = 0.18
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 99 HAVQRPFGCRYCDKAFKTSGDLSKHSAIHNG 129
+ ++P+ C C FK +S H H+G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 33.3 bits (75), Expect = 0.058
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 138 TSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEG 197
+H + +Q+ + + C C +N L +
Sbjct: 193 RQVSKH--AFSLKQLDNPARIPPCGWKCSKCD------MRENLWLNLT-------DGSIL 237
Query: 198 CKRKFVDLSSLKKHTKIHTQQTFHC 222
C R++ D S H H ++T +
Sbjct: 238 CGRRYFDGSGGNNHAVEHYRETGYP 262
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.9 bits (65), Expect = 0.12
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
R + C +C + F+++ L H +H DR
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.9 bits (62), Expect = 0.43
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHTQ 217
K + C GC + F +++ H + H +
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 24.8 bits (54), Expect = 4.8
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 128 NGDRPYKCNYTSCGRHFRTHTQRQIHERCHLDSK 161
D+ ++C + C + F+ + H + HL+ +
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 24.8 bits (54), Expect = 5.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 72 EKLHVCTYEDCNSVFQTQAEWEEHARMHAVQR 103
+K C + C F+ + H + H R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.3 bits (60), Expect = 0.51
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 189 KPYVCHVEGCKRKFVDLSSLKKHTKIHT 216
KP++C GC ++F + L H H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 26.2 bits (57), Expect = 1.2
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 128 NGDRPYKCNYTSCGRHFRTHTQRQIHERCH 157
+ D+P+ C CG+ F +H+ H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.56
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 22/78 (28%)
Query: 49 EHLQLSEEIMKKSLQEDEKIFEKEKLHV---CTY--ED------------CNSVFQTQAE 91
L + +++ K L ++ F + + + T+ D + + + +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 92 WEEHARM---HAVQRPFG 106
WE + H + FG
Sbjct: 490 WETTTQFKATHILD--FG 505
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.0 bits (59), Expect = 0.58
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 99 HAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
+ +RPF CR C AF T + ++H +H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.9 bits (56), Expect = 1.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 157 HLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
+P+ C +C +F + + HL++H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 23.9 bits (51), Expect = 9.4
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 127 HNGDRPYKCNY--------TSCGRHFRTHT 148
+G RP+ C +C RH + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 0.67
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 154 ERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKP 190
E C C C + F S N H + KP
Sbjct: 46 EVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 27.2 bits (59), Expect = 2.1
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 82 CNSVFQTQAE--WEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
CN V + + +Q C++C K FK+ L+ H+ + +P
Sbjct: 30 CNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 26.7 bits (58), Expect = 0.72
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYG 187
+PYSC VCG+ F H R+H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 26.6 bits (58), Expect = 0.78
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIH 185
KPY C CG+ F+ ++ NH+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 30.1 bits (66), Expect = 0.80
Identities = 23/198 (11%), Positives = 56/198 (28%), Gaps = 7/198 (3%)
Query: 40 RTASNDIYAEHLQLSEEIMKKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEW----EEH 95
+ + + + + + ++ + + ++ + L + F W E+
Sbjct: 142 KRIRDFLLQLYREAVDWAVENGVVKVDRSEKDSMLKEAYLKIVREYFTVSITWVSLSEKE 201
Query: 96 ARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIHER 155
+ K + + ++S + Y + E+
Sbjct: 202 DIYQVTENAGLSDEDVKKWLKFAEKKENSRVLERIAIYPLLVKILDSLGERKVTEERFEK 261
Query: 156 CHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKP--YVCHVEGCKRKFVDLSSLKKHTK 213
K + CHVCG + +H + +C + KR + K K
Sbjct: 262 SE-QLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKRYYPVWIRSKTGQK 320
Query: 214 IHTQQTFHCNLCNKTYKH 231
I + L K ++
Sbjct: 321 IRFESVVDVALLYKNWRK 338
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 29.6 bits (65), Expect = 1.0
Identities = 10/85 (11%), Positives = 23/85 (27%)
Query: 43 SNDIYAEHLQLSEEIMKKSLQEDEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQ 102
+ E++M S+ + E + + F ++ +
Sbjct: 517 GVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKEN 576
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIH 127
+ CR C + D+ H
Sbjct: 577 KKLLCRKCKALACYTADVRVIEDCH 601
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.9 bits (61), Expect = 1.2
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 80 EDCNSV-FQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRP 132
C +V +T ++H Q F C +C K ++ + H ++ P
Sbjct: 38 PTCQAVGRKTIEGLKKHMENCK-QEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 27.9 bits (61), Expect = 1.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 201 KFVDLSSLKKHTKIHTQQTFHCNLCNKTYK 230
+ LKKH + Q+ F C+ C K +
Sbjct: 44 GRKTIEGLKKHMENCKQEMFTCHHCGKQLR 73
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.6 bits (63), Expect = 1.4
Identities = 4/47 (8%), Positives = 11/47 (23%)
Query: 139 SCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
+ + +Q IH K + + + +
Sbjct: 185 DYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.9 bits (61), Expect = 2.9
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 68 IFEKEKLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
I E L V ED + ++ H + ++ ++ DL +
Sbjct: 172 IRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 26.0 bits (57), Expect = 1.6
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDRPYK 134
F C C K F S LSKH +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.9 bits (56), Expect = 1.9
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 102 QRPFGCRYCDKAF-KTSGDLSKHSAIHNG 129
R C YCD F K DL +H H G
Sbjct: 7 GRAMKCPYCDFYFMKNGSDLQRHIWAHEG 35
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 2.1
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 103 RPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
+P+ C C A +L+ H H G++
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (55), Expect = 2.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 99 HAVQRPFGCRYCDKAFKTSGDLSKHSAIH 127
++ F C C+K F S L++H IH
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 24.0 bits (51), Expect = 9.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 157 HLDSKPYSCHVCGRSFISNTHKNNHLRIH 185
K + C+ C ++F + + H RIH
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.9 bits (54), Expect = 3.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDR 131
F C C K F S L+ H +H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 3.2
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 27/60 (45%)
Query: 48 AEHLQLSEE---IMK------KSLQE-DEKIFEKEKLHVCTYEDCNSVFQTQAEWEEHAR 97
A+ +L++E I K K LQE D K + EW E A+
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAA--SKVM---------------EQEWREKAK 117
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 3.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGDR 131
F C YC+K FK L H IH ++
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (54), Expect = 4.0
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
K + C CG F H +H G K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 24.8 bits (53), Expect = 4.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 102 QRPFGCRYCDKAFKTSGDLSKHSAIHNGDR 131
++ CR C + F L +H +H G +
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 4.4
Identities = 21/185 (11%), Positives = 49/185 (26%), Gaps = 53/185 (28%)
Query: 14 NMFGG---DEVC-WESTNSGWSNNGFNQNTRTASNDIYAEHLQLSEEIMKKS------LQ 63
++ D + W+ W + ++ T + + L +K
Sbjct: 331 SIIAESIRDGLATWD----NWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDRLSVFP 382
Query: 64 EDEKIFEK--EKL-HVCTYEDCNSVFQT-------QAEWEEHA-RMHAVQRPFGCRYCDK 112
I + D V + + +E + ++ Y +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------YLEL 435
Query: 113 AFKTSGDLSKHSAI---HNGDRPYKCN-----------YTSCGRHFRTHTQRQIHERCHL 158
K + + H +I +N + + + Y+ G H + ER L
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH---PERMTL 492
Query: 159 DSKPY 163
+
Sbjct: 493 FRMVF 497
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase;
1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Length = 129
Score = 26.5 bits (58), Expect = 4.9
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 138 TSCGRHFRTHTQRQIHERCHLDSKPYSCHVCGRSFISNTHKNNHLRIHYGLKPYVCHVEG 197
+H + +Q+ + + C C +N L +
Sbjct: 12 RQVSKH--AFSLKQLDNPARIPPCGWKCSKCD------MRENLWLNLT-------DGSIL 56
Query: 198 CKRKFVDLSSLKKHTKIHTQQTFHC 222
C R++ D S H H ++T +
Sbjct: 57 CGRRYFDGSGGNNHAVEHYRETGYP 81
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 27.2 bits (59), Expect = 5.9
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 10/103 (9%)
Query: 52 QLSEEIMKKSLQEDEKIFEKE-KLHVCTYEDCNSVFQTQAEWEEHARMHAVQRPFGCRYC 110
+ EE+M K++++ +K E+ + + V + E ++ Q+ C C
Sbjct: 759 RYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKNLLCGKC 818
Query: 111 DKAFKTSGDLSKHSAIHNGDRPYKCNYTSCGRHFRTHTQRQIH 153
++ D+ H + G F+ + H
Sbjct: 819 KAYACSTDDIRIIKDSH---------HIVLGEAFKERYTTKPH 852
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 25.9 bits (56), Expect = 5.9
Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 93 EEHARMHAVQRPFGCRYCDKAFKTSGDLSKHSAIHNGDRPYKCNY--TSCGRHFRTHTQR 150
+ + V+ + C+YC + H + + +Y C + +
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 151 QIH-ERCHLDSKPYSCHVCGRS 171
H + H + + + R+
Sbjct: 67 SEHNLKYHPGEENFKLTMVKRN 88
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 25.2 bits (54), Expect = 7.7
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 105 FGCRYCDKAFKTSGDLSKHSAIHNGD 130
+ C++CD +++ +L+ H IHN +
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIHNEE 51
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 24.0 bits (51), Expect = 8.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 161 KPYSCHVCGRSFISNTHKNNHLRIHYGLK 189
KP C +CG++F + H+R H G K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid; 2.69A
{Burkholderia pseudomallei}
Length = 439
Score = 26.6 bits (58), Expect = 8.2
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 78 TYEDCNSVFQTQAEWEEHARMHAVQRPF 105
+ + + Q +WE R ++R F
Sbjct: 6 SRQ--QQAQELQKQWETDPRWKGIKRAF 31
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.9 bits (51), Expect = 9.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 163 YSCHVCGRSFISNTHKNNHLRIH 185
Y CH+C R F + ++ H+ +H
Sbjct: 10 YDCHICERKFKNELDRDRHMLVH 32
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 23.7 bits (51), Expect = 9.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 161 KPYSCHVCGRSF 172
K Y+C +C R+F
Sbjct: 1 KAYACGLCNRAF 12
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.433
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,498,907
Number of extensions: 189458
Number of successful extensions: 1849
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1326
Number of HSP's successfully gapped: 682
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)