BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9363
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin
Specific Chaperone B
Length = 113
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 159 DEKRRAEFLEANPRVGDNYFQVMEDDIG----LRVCDSEGHRGTIRYVGSVEGTQGVWYG 214
+E R + EA R+ + Q +G +R D RGT+ YVG + G W G
Sbjct: 9 EELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVG 68
Query: 215 IDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS 256
+ +D E GK+DGS NG +YF + G+F++ + G S
Sbjct: 69 VRYD-EPLGKNDGSVNGKRYFECQAKY-GAFVKPSAVTVGDS 108
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
+GHRGT+ YVG+ G W G+ D E +GK+DG+ G KYF T G F+R+ ++
Sbjct: 24 KGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 80
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
+GHRGT+ YVG+ G W G+ D E +GK+DG+ G KYF T G F+R+ ++
Sbjct: 24 KGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 80
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin
1
Length = 112
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
+GHRGT+ YVG+ G W G+ D E +GK+DG+ G KYF T G F+R+ ++
Sbjct: 45 KGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 101
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 71
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
+GHRGT+ YVG G W G+ D E +GK+DG+ G KYF T G F+R+ ++
Sbjct: 12 KGHRGTVAYVGMTLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 68
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
+GHRGT+ YVG G W G+ D E +GK+DG+ G KYF T G F+R+ ++
Sbjct: 24 KGHRGTVAYVGMTLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 80
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 184 DIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
++G +V + +G +R+ G + G WYGI+ D T GKHDGS GV+YF
Sbjct: 27 EVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPT-GKHDGSVFGVRYF 77
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 180 VMEDDIGLRVCDS---EGHR-GTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
+M +GLR+ D +G + GT+R+ G+ E G W G++ D E GK+DGS GV+YF
Sbjct: 10 LMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELD-EPEGKNDGSVGGVRYF 68
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 196 RGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
RG + YVG+ + +GVW G+ +D E GK+DGS GV+YF
Sbjct: 29 RGEVAYVGATKFKEGVWVGVKYD-EPVGKNDGSVAGVRYF 67
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 196 RGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
RG + YVG+ + +GVW G+ +D E GK+DGS GV+YF
Sbjct: 32 RGEVAYVGATKFKEGVWVGVKYD-EPVGKNDGSVAGVRYF 70
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
+G RV GTIR+ G+ G WYGI+ + + GK+DGS GV+YF
Sbjct: 13 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELE-KPHGKNDGSVGGVQYF 62
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
+G RV G +RYVG + +G W G++ D E GK+DG+ G +YF
Sbjct: 10 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYF 59
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G I+++G + G W GI D E GK+DGS GV+YF G
Sbjct: 67 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 124
Query: 245 FMRRDKLN 252
F R KL
Sbjct: 125 FTRPSKLT 132
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
+G RV + GT+R+ G+ E G W GI+ D E GK++GS V+YF
Sbjct: 27 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELD-EPEGKNNGSVGRVQYF 76
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 182 EDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
E IG RV G +R++G + +G W G++ D E GK+DG+ G +YF
Sbjct: 9 ELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYF 61
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 182 EDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
E IG RV G +R++G + +G W G++ D E GK+DG+ G +YF
Sbjct: 1 ELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYF 53
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G I+++G + G W GI D E GK+DGS GV+YF G
Sbjct: 5 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 62
Query: 245 FMRRDKL 251
F R KL
Sbjct: 63 FTRPSKL 69
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G I+++G + G W GI D E GK+DGS GV+YF G
Sbjct: 10 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 67
Query: 245 FMRRDKL 251
F R KL
Sbjct: 68 FTRPSKL 74
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G I+++G + G W GI D E GK+DGS GV+YF G
Sbjct: 5 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 62
Query: 245 FMRRDKL 251
F R KL
Sbjct: 63 FTRPSKL 69
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 182 EDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
E IG RV G +R++G + +G W G++ D E GK+DG+ G +YF
Sbjct: 38 ELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYF 90
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 173 VGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGV 232
VGD++ + +G RV + G ++Y+G + G W G+ D GK+DG+ GV
Sbjct: 11 VGDDFLG--DFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGV 67
Query: 233 KYFWTHSTTSGSFMRRDKL 251
+YF G F R KL
Sbjct: 68 RYFEC-PALQGIFTRPSKL 85
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G I+++G + G W GI D E GK+DGS GV+YF G
Sbjct: 6 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 63
Query: 245 FMRRDK 250
F R K
Sbjct: 64 FTRPSK 69
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin-
Like Protein Kif13b
Length = 100
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 197 GTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
G +RYVG + +G W G++ D + GK+DGS G +YF
Sbjct: 38 GVVRYVGPADFQEGTWVGVELDLPS-GKNDGSIGGKQYF 75
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
IG RV G +R+ G +G W G++ D + G ++G+++G+ YF
Sbjct: 34 IGDRVLIGNVQPGILRFKGETSFAKGFWAGVELD-KPEGNNNGTYDGIAYF 83
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 198 TIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNF 253
T+RYVG + G+W G++ S +GK+DG+ +YF T G +R ++ +
Sbjct: 29 TVRYVGPTDFASGIWLGLELRS-AKGKNDGAVGDKRYF-TCKPNYGVLVRPSRVTY 82
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 358 NRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
N+I +L + + + L LY+ N I +WGE++ L +L L+ L LA L N
Sbjct: 104 NQIASLSGIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 155
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 358 NRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
N+I +L + + + L LY+ N I +WGE++ L +L L+ L LA L N
Sbjct: 103 NQIASLSGIEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154
>pdb|1IXD|A Chain A, Solution Structure Of The Cap-Gly Domain From Human
Cylindromatosis Tomour-Suppressor Cyld
Length = 104
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 197 GTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
G IR++G G V G++ + E G DG+ G +YF
Sbjct: 34 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYF 72
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 29/86 (33%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI----------------VDWGEVNALG 393
L+L NR+TT+ + G F S L+EL+L+ N I +D GE+ L
Sbjct: 117 LELFDNRLTTIPN--GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 394 --------SLPNLKYLNLASTNLRNI 411
L NL+YLNLA NLR I
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREI 200
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 353 LKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L L NRI TL+ F LEEL L EN IV E A +L NL+ L L S L+ I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 412 KL 413
L
Sbjct: 96 PL 97
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN DI L + L L N+I+ + + G+ +
Sbjct: 123 DINGLVH--LPQ--LESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGL-T 175
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGH 418
L+ LYL +N+I D + AL L NL L L S N +N + +
Sbjct: 176 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSN 219
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN +L L + L L N+I+ + + G+ +
Sbjct: 126 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTK--LDTLSLEDNQISDIVPLAGL-T 178
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGH 418
L+ LYL +N+I D + AL L NL L L S N +N + +
Sbjct: 179 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSN 222
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 7 NAGKTHDEIEQAVPFIEDLD----LSRNLLASWFA--VGEITCQL-----KHLR-HLNLR 54
A K HD + QA+ ED+ L R ++S A + E+T L K LR L L
Sbjct: 6 KATKPHDRLAQALA--EDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLA 63
Query: 55 I-RLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEE 113
RL P H +LA V F+H TL +D V E P + L K+ +L +
Sbjct: 64 AARLVGYGGPFHVHLAATVEFIHTA-TLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGD 122
Query: 114 RVVSSREKTIARLGGLKLL----NGSAI 137
+ + + + G ++++ N SA+
Sbjct: 123 YLFARSFQLMTDTGNMRVMEILANASAV 150
>pdb|3UGJ|A Chain A, Formyl Glycinamide Ribonucletide Amidotransferase From
Salmonella Typhimurum: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 14/144 (9%)
Query: 45 LKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRF 104
L R L R ++++ H+ AE V F L L D + + LL Y P LSS
Sbjct: 19 LSAFRINKLLARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPALSSHTP 78
Query: 105 TKNPILAEERVV-----SSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLD 159
+L R SS+ IA GL+ ++R ER G Y YI+ +
Sbjct: 79 AGKLLLVTPRPGTISPWSSKATDIAHNCGLQ-----QVDRLER-GVAY-YIE--ASTLTA 129
Query: 160 EKRRAEFLEANPRVGDNYFQVMED 183
E+ R E + R+ + F + D
Sbjct: 130 EQWRQVAAELHDRMMETVFSSLTD 153
>pdb|1T3T|A Chain A, Structure Of Formylglycinamide Synthetase
pdb|3UJN|A Chain A, Formyl Glycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium : Role Of The Atp Complexation
And Glutaminase Domain In Catalytic Coupling
pdb|3UMM|A Chain A, Formylglycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 14/144 (9%)
Query: 45 LKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRF 104
L R L R ++++ H+ AE V F L L D + + LL Y P LSS
Sbjct: 19 LSAFRINKLLARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPALSSHTP 78
Query: 105 TKNPILAEERVV-----SSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLD 159
+L R SS+ IA GL+ ++R ER G Y YI+ +
Sbjct: 79 AGKLLLVTPRPGTISPWSSKATDIAHNCGLQ-----QVDRLER-GVAY-YIE--ASTLTA 129
Query: 160 EKRRAEFLEANPRVGDNYFQVMED 183
E+ R E + R+ + F + D
Sbjct: 130 EQWRQVAAELHDRMMETVFSSLTD 153
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN +L L L L N+I+ + + G+ +
Sbjct: 124 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTKL--DTLSLEDNQISDIVPLAGL-T 176
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGH 418
L+ LYL +N+I D + AL L NL L L S N +N + +
Sbjct: 177 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSN 220
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN +L L L L N+I+ + + G+ +
Sbjct: 126 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTKL--DTLSLEDNQISDIVPLAGL-T 178
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGH 418
L+ LYL +N+I D + AL L NL L L S N +N + +
Sbjct: 179 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSN 222
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN +L L L L N+I+ + + G+ +
Sbjct: 146 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTKL--DTLSLEDNQISDIVPLAGL-T 198
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGH 418
L+ LYL +N+I D + AL L NL L L S N +N + +
Sbjct: 199 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSN 242
>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
pdb|3GAZ|B Chain B, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
Length = 343
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 143 QGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDS 192
+GS+ +Y+++ GA +D R E A G F ++ D +G V D+
Sbjct: 183 RGSDLEYVRDLGATPIDASREPEDYAAEHTAGQG-FDLVYDTLGGPVLDA 231
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVP-GMF 370
D +G++ PQ + +L LGN +L L L L N+I+ D VP
Sbjct: 121 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTKL--DTLSLEDNQIS--DIVPLACL 172
Query: 371 SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGH 418
+ L+ LYL +N+I D + AL L NL L L S N +N + +
Sbjct: 173 TKLQNLYLSKNHISD---LRALCGLKNLDVLELFSQEALNKPINHQSN 217
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 25/84 (29%)
Query: 353 LKLPSNRITTLDSVPGMF-SSLEELYLQENNI----------------VDWGEVN----- 390
L+L NR+TT+ + + S L EL+L+ N I +D GE+
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Query: 391 ---ALGSLPNLKYLNLASTNLRNI 411
A L NL+YLNL NL++I
Sbjct: 148 SEAAFEGLVNLRYLNLGMCNLKDI 171
>pdb|1M1C|A Chain A, Structure Of The L-A Virus
pdb|1M1C|B Chain B, Structure Of The L-A Virus
Length = 680
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 251 LNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAP 288
N GSS++E + +KY+ D L + + E++++ P
Sbjct: 63 FNEGSSYLEGIAKKYLTLDGGLAIDNVLNELRSTCGIP 100
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN +L L L L N+I+ + + G+ +
Sbjct: 144 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTKL--DTLSLEDNQISDIVPLAGL-T 196
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
L+ LYL +N+I D + AL L NL L L S N +N
Sbjct: 197 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPIN 236
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN +L L L L N+I+ + + G+ +
Sbjct: 144 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTKL--DTLSLEDNQISDIVPLAGL-T 196
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
L+ LYL +N+I D + AL L NL L L S N +N
Sbjct: 197 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPIN 236
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN +L L L L N+I+ + + G+ +
Sbjct: 144 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTKL--DTLSLEDNQISDIVPLAGL-T 196
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
L+ LYL +N+I D + AL L NL L L S N +N
Sbjct: 197 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPIN 236
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 25/84 (29%)
Query: 353 LKLPSNRITTLDSVPGMF-SSLEELYLQENNI----------------VDWGEVN----- 390
L+L NR+TT+ + + S L EL+L+ N I +D GE+
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Query: 391 ---ALGSLPNLKYLNLASTNLRNI 411
A L NL+YLNL NL++I
Sbjct: 148 SEAAFEGLVNLRYLNLGMCNLKDI 171
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
G+ ++L+EL L N + D G L SL NL L+LA+ + N+
Sbjct: 214 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNL 254
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
G+ ++L+EL L N + D G L SL NL L+LA+ + N+
Sbjct: 217 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNL 257
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS 371
D +G++ PQ + +L LGN +L L L L N+I+ + + G+ +
Sbjct: 121 DINGLVH--LPQ--LESLYLGNNKITDITVLSRLTKL--DTLSLEDNQISDIVPLAGL-T 173
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
L+ LYL +N+I D + AL L NL L L S N +N
Sbjct: 174 KLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPIN 213
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
G+ ++L+EL L N + D G L SL NL L+LA+ + N+
Sbjct: 213 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNL 253
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
G+ ++L+EL L N + D G L SL NL L+LA+ + N+
Sbjct: 214 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNL 254
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
G+ ++L+EL L N + D G L SL NL L+LA+ + N+
Sbjct: 218 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNL 258
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
G+ ++L+EL L N + D G L SL NL L+LA+ + N+
Sbjct: 214 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNL 254
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
G+ ++L+EL L N + D G L SL NL L+LA+ + N+
Sbjct: 213 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNL 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,907,423
Number of Sequences: 62578
Number of extensions: 553098
Number of successful extensions: 1432
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 84
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)