Query psy9363
Match_columns 421
No_of_seqs 303 out of 3433
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 17:12:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3207|consensus 100.0 7E-31 1.5E-35 248.8 10.7 228 182-416 2-291 (505)
2 PLN00113 leucine-rich repeat r 99.9 5.1E-22 1.1E-26 219.8 9.7 374 9-419 202-593 (968)
3 PLN00113 leucine-rich repeat r 99.9 1E-21 2.2E-26 217.4 9.7 104 303-411 429-538 (968)
4 KOG2982|consensus 99.8 1.8E-19 3.9E-24 163.9 6.4 171 2-174 54-326 (418)
5 KOG4194|consensus 99.8 8.8E-20 1.9E-24 178.8 2.3 338 21-416 79-436 (873)
6 KOG0444|consensus 99.7 7.9E-19 1.7E-23 173.3 -2.2 96 313-414 213-309 (1255)
7 PF14580 LRR_9: Leucine-rich r 99.7 2.1E-17 4.6E-22 144.2 3.5 130 14-154 36-167 (175)
8 KOG0472|consensus 99.7 2.4E-18 5.2E-23 162.2 -3.5 101 303-409 436-541 (565)
9 KOG3207|consensus 99.7 7.8E-17 1.7E-21 153.7 5.6 153 2-157 130-385 (505)
10 KOG4194|consensus 99.7 4.7E-17 1E-21 159.9 3.9 121 281-405 320-448 (873)
11 KOG0444|consensus 99.6 1.8E-17 4E-22 163.7 -2.4 97 2-109 87-185 (1255)
12 KOG0618|consensus 99.6 8.6E-17 1.9E-21 165.4 -2.0 372 11-416 36-472 (1081)
13 KOG0472|consensus 99.5 2E-16 4.2E-21 149.5 -8.5 97 312-413 425-522 (565)
14 KOG1644|consensus 99.4 1.1E-13 2.3E-18 120.1 1.3 126 14-149 36-162 (233)
15 KOG4237|consensus 99.3 2.2E-13 4.7E-18 128.8 -0.9 300 3-408 49-358 (498)
16 PF01302 CAP_GLY: CAP-Gly doma 99.3 1.3E-11 2.8E-16 90.5 7.4 64 185-251 1-68 (69)
17 KOG0618|consensus 99.3 1.2E-12 2.6E-17 135.4 1.6 81 21-110 242-323 (1081)
18 PRK15387 E3 ubiquitin-protein 99.2 2E-11 4.3E-16 129.0 7.4 77 324-411 382-460 (788)
19 KOG3206|consensus 99.1 1.4E-10 2.9E-15 99.8 6.2 74 183-260 149-227 (234)
20 cd00116 LRR_RI Leucine-rich re 99.0 4.9E-10 1.1E-14 108.2 6.2 123 12-137 15-147 (319)
21 PLN03210 Resistant to P. syrin 99.0 2.5E-09 5.4E-14 120.3 12.5 96 303-407 803-904 (1153)
22 PF14580 LRR_9: Leucine-rich r 99.0 1.8E-10 3.9E-15 100.7 2.0 86 319-410 39-127 (175)
23 PRK15370 E3 ubiquitin-protein 98.9 8.2E-10 1.8E-14 117.3 6.0 75 21-110 179-254 (754)
24 PRK15387 E3 ubiquitin-protein 98.9 6E-09 1.3E-13 110.4 11.3 76 324-412 362-438 (788)
25 cd00116 LRR_RI Leucine-rich re 98.9 2.7E-09 5.9E-14 103.0 6.2 93 316-410 187-292 (319)
26 PRK15370 E3 ubiquitin-protein 98.8 1.1E-08 2.4E-13 108.8 9.3 82 324-411 346-430 (754)
27 KOG4237|consensus 98.8 3.7E-10 8E-15 107.3 -1.8 94 11-111 82-178 (498)
28 PF13855 LRR_8: Leucine rich r 98.7 9.4E-09 2E-13 73.9 3.2 59 349-408 1-61 (61)
29 PLN03210 Resistant to P. syrin 98.7 8E-08 1.7E-12 108.3 11.2 84 17-109 631-716 (1153)
30 KOG0617|consensus 98.6 3E-09 6.5E-14 90.4 -1.2 104 303-410 34-141 (264)
31 KOG2123|consensus 98.6 1.4E-08 3E-13 92.6 2.6 116 20-145 19-135 (388)
32 KOG0617|consensus 98.6 3.3E-09 7.2E-14 90.2 -1.5 93 320-418 31-124 (264)
33 COG5244 NIP100 Dynactin comple 98.6 6.7E-08 1.4E-12 93.0 6.9 64 183-249 4-67 (669)
34 KOG2739|consensus 98.5 3.8E-08 8.2E-13 89.3 1.3 133 2-145 26-161 (260)
35 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.7E-12 66.7 3.2 58 324-383 1-61 (61)
36 PLN03150 hypothetical protein; 98.4 3.2E-07 7E-12 96.7 5.5 85 21-111 419-504 (623)
37 KOG2982|consensus 98.4 3.2E-07 6.8E-12 84.7 3.7 108 305-415 53-165 (418)
38 PLN03150 hypothetical protein; 98.3 5.5E-07 1.2E-11 95.0 5.1 92 312-407 432-526 (623)
39 KOG1259|consensus 98.3 1.4E-07 3.1E-12 87.0 0.5 103 304-411 286-414 (490)
40 KOG0971|consensus 98.2 2.3E-06 5.1E-11 88.4 7.1 69 181-251 4-73 (1243)
41 KOG1259|consensus 98.2 3.2E-07 6.9E-12 84.8 0.3 79 303-387 330-415 (490)
42 COG4886 Leucine-rich repeat (L 98.1 4.7E-06 1E-10 83.2 7.3 64 317-385 227-291 (394)
43 PF12799 LRR_4: Leucine Rich r 98.0 5.1E-06 1.1E-10 55.2 2.7 38 372-411 2-39 (44)
44 KOG1644|consensus 97.9 5.8E-06 1.3E-10 72.5 3.2 83 324-410 42-127 (233)
45 PF12799 LRR_4: Leucine Rich r 97.9 5.8E-06 1.3E-10 54.9 2.4 37 351-387 4-40 (44)
46 KOG4579|consensus 97.8 3.4E-06 7.3E-11 69.5 -1.3 86 324-413 53-140 (177)
47 KOG4579|consensus 97.7 3.9E-06 8.5E-11 69.1 -1.5 130 4-150 8-141 (177)
48 KOG1909|consensus 97.7 2.5E-05 5.4E-10 73.9 3.0 126 13-140 178-311 (382)
49 KOG0531|consensus 97.6 2.6E-05 5.6E-10 78.5 1.8 88 318-413 91-179 (414)
50 KOG1859|consensus 97.5 1.5E-05 3.3E-10 81.8 -0.5 83 16-109 183-266 (1096)
51 KOG1859|consensus 97.5 1.2E-05 2.6E-10 82.5 -1.5 46 88-138 75-120 (1096)
52 KOG1909|consensus 97.5 0.00019 4.1E-09 68.0 6.3 122 16-139 88-225 (382)
53 KOG4568|consensus 97.5 8.6E-05 1.9E-09 77.2 4.4 65 183-249 18-82 (664)
54 KOG3665|consensus 97.4 0.00027 5.9E-09 75.0 6.8 117 11-135 139-258 (699)
55 KOG2123|consensus 97.4 9.7E-06 2.1E-10 74.4 -3.6 83 324-410 19-102 (388)
56 COG4886 Leucine-rich repeat (L 97.3 8.8E-05 1.9E-09 74.0 1.4 90 312-407 129-220 (394)
57 KOG0531|consensus 97.0 0.00021 4.6E-09 71.9 0.9 87 319-412 69-156 (414)
58 KOG2120|consensus 97.0 0.00043 9.3E-09 64.4 2.6 66 15-82 205-272 (419)
59 KOG2739|consensus 97.0 0.00039 8.5E-09 63.5 2.1 80 324-404 65-151 (260)
60 COG5238 RNA1 Ran GTPase-activa 97.0 0.0022 4.7E-08 59.1 6.8 89 319-410 211-317 (388)
61 KOG0532|consensus 97.0 9.4E-05 2E-09 74.2 -2.2 94 314-413 113-228 (722)
62 KOG3763|consensus 96.9 0.00091 2E-08 67.1 4.4 100 16-140 214-314 (585)
63 KOG0532|consensus 96.6 0.00038 8.3E-09 70.0 -0.7 92 10-112 157-249 (722)
64 KOG4658|consensus 96.6 0.0017 3.8E-08 70.8 3.9 82 324-406 770-856 (889)
65 KOG3556|consensus 96.5 0.007 1.5E-07 59.9 7.0 66 183-250 236-311 (724)
66 KOG3665|consensus 96.4 0.0021 4.5E-08 68.4 2.9 81 324-405 148-229 (699)
67 KOG2120|consensus 96.4 0.00061 1.3E-08 63.4 -1.1 113 13-135 228-346 (419)
68 KOG4658|consensus 95.8 0.0068 1.5E-07 66.3 3.2 88 14-108 565-653 (889)
69 COG5238 RNA1 Ran GTPase-activa 95.7 0.049 1.1E-06 50.5 7.8 121 18-139 90-226 (388)
70 KOG3763|consensus 93.9 0.029 6.3E-07 56.6 1.8 59 324-383 218-282 (585)
71 PF13504 LRR_7: Leucine rich r 93.7 0.025 5.5E-07 29.1 0.5 14 397-410 2-15 (17)
72 KOG0241|consensus 93.1 0.1 2.2E-06 55.6 4.1 66 183-254 1631-1696(1714)
73 KOG4568|consensus 92.9 0.033 7.2E-07 58.4 0.4 69 182-252 154-222 (664)
74 PF13504 LRR_7: Leucine rich r 92.8 0.064 1.4E-06 27.6 1.2 15 20-34 1-15 (17)
75 PF13516 LRR_6: Leucine Rich r 91.6 0.11 2.5E-06 29.1 1.4 16 19-34 1-16 (24)
76 PF00560 LRR_1: Leucine Rich R 91.1 0.13 2.8E-06 28.3 1.3 11 373-383 2-12 (22)
77 smart00365 LRR_SD22 Leucine-ri 90.8 0.15 3.2E-06 29.5 1.3 20 19-38 1-20 (26)
78 PRK15386 type III secretion pr 90.5 0.44 9.5E-06 47.4 5.2 91 303-407 73-188 (426)
79 smart00370 LRR Leucine-rich re 89.3 0.2 4.3E-06 28.7 1.1 18 395-412 1-18 (26)
80 smart00369 LRR_TYP Leucine-ric 89.3 0.2 4.3E-06 28.7 1.1 18 395-412 1-18 (26)
81 PRK15386 type III secretion pr 89.1 0.53 1.1E-05 46.9 4.5 43 351-405 97-141 (426)
82 KOG1947|consensus 88.4 0.55 1.2E-05 47.6 4.4 113 16-136 184-304 (482)
83 KOG4308|consensus 87.9 0.096 2.1E-06 53.5 -1.5 133 3-138 154-301 (478)
84 smart00446 LRRcap occurring C- 87.7 0.4 8.6E-06 27.6 1.6 21 116-136 2-22 (26)
85 smart00369 LRR_TYP Leucine-ric 87.5 0.5 1.1E-05 27.0 2.0 18 370-387 1-18 (26)
86 smart00370 LRR Leucine-rich re 87.5 0.5 1.1E-05 27.0 2.0 18 370-387 1-18 (26)
87 smart00368 LRR_RI Leucine rich 86.0 0.89 1.9E-05 26.6 2.6 15 20-34 2-16 (28)
88 smart00365 LRR_SD22 Leucine-ri 83.8 0.86 1.9E-05 26.3 1.7 16 371-386 2-17 (26)
89 KOG0473|consensus 83.8 0.11 2.4E-06 47.2 -3.0 90 13-112 36-126 (326)
90 PF13306 LRR_5: Leucine rich r 83.2 2.6 5.6E-05 34.2 5.2 80 317-405 30-112 (129)
91 KOG1947|consensus 82.8 1.4 3.1E-05 44.5 4.2 118 12-135 206-329 (482)
92 PF13306 LRR_5: Leucine rich r 81.3 2.3 5E-05 34.5 4.2 86 316-410 6-94 (129)
93 smart00364 LRR_BAC Leucine-ric 80.1 0.89 1.9E-05 26.2 0.9 16 396-411 2-17 (26)
94 KOG4341|consensus 79.9 2.4 5.2E-05 41.9 4.3 92 15-108 289-383 (483)
95 KOG0473|consensus 76.3 0.11 2.3E-06 47.2 -5.6 86 317-409 37-124 (326)
96 KOG3864|consensus 68.5 2.1 4.5E-05 38.2 0.7 34 370-404 150-184 (221)
97 KOG4341|consensus 63.9 7.2 0.00016 38.7 3.4 117 13-135 313-434 (483)
98 KOG3864|consensus 62.4 5.7 0.00012 35.5 2.2 63 68-136 123-185 (221)
99 smart00367 LRR_CC Leucine-rich 55.0 15 0.00033 20.7 2.5 16 19-34 1-17 (26)
100 KOG4308|consensus 35.0 7.9 0.00017 39.7 -1.5 94 19-112 203-305 (478)
101 TIGR00864 PCC polycystin catio 24.7 41 0.00089 41.5 1.8 31 354-384 1-32 (2740)
102 PF07723 LRR_2: Leucine Rich R 24.6 54 0.0012 18.7 1.4 23 22-44 2-24 (26)
103 PTZ00243 ABC transporter; Prov 24.1 1.2E+02 0.0026 36.2 5.4 58 183-241 125-200 (1560)
No 1
>KOG3207|consensus
Probab=99.97 E-value=7e-31 Score=248.76 Aligned_cols=228 Identities=32% Similarity=0.627 Sum_probs=189.9
Q ss_pred cCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhHHHh
Q psy9363 182 EDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEAL 261 (421)
Q Consensus 182 ~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~~al 261 (421)
.+.+|.|+. +++.++|+||+|.|+++.|.|+||||||..||||+|.++|.+||+|..|+.|||+++.++..+.++..++
T Consensus 2 ~~~IG~Rvk-I~~~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p~d~~~t~ 80 (505)
T KOG3207|consen 2 TMEIGTRVK-IGGEIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFPTDLLRTF 80 (505)
T ss_pred ceeccceEE-EcCEEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCCccHHHHH
Confidence 356899998 9999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred hhhhccccchhhhccccceeeeeecCceeEeecccchhhhh----CCCccCCCC---CCCc--hhhhcCCCCCccEEEee
Q psy9363 262 HRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ----NTNKLPIPN---DTSG--VMEQIFPQGHIHTLTLG 332 (421)
Q Consensus 262 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~----~L~~l~l~~---~~~~--~~~~~l~~~~L~~L~Ls 332 (421)
.++|...... +.+....+.++++.+|.+||+++..++ +|+.+.|.+ +..+ .....| ++++.||||
T Consensus 81 ~ery~e~~s~----~sd~~~~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~--~~v~~LdLS 154 (505)
T KOG3207|consen 81 KERYYEKYSY----SSDLESVLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKIL--PNVRDLDLS 154 (505)
T ss_pred HHHHHHhhcC----CcchhhHhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhC--Ccceeecch
Confidence 9999877542 222233456889999999999999888 566667776 3333 467889 999999999
Q ss_pred Ccccc-hhhHHHHhccCCC-cEEEccCCcCcc-cCCC-------------------------------------------
Q psy9363 333 NMGYI-WADILKLLANFPV-TCLKLPSNRITT-LDSV------------------------------------------- 366 (421)
Q Consensus 333 ~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~------------------------------------------- 366 (421)
.|.|+ |..+.+++..+|+ +.|+|+.|++.- ....
T Consensus 155 ~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~ 234 (505)
T KOG3207|consen 155 RNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI 234 (505)
T ss_pred hhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc
Confidence 99999 9999999999999 999999999962 1000
Q ss_pred -------CCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCCCCC
Q psy9363 367 -------PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKE 416 (421)
Q Consensus 367 -------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p~~ 416 (421)
...+..|++|||++|++-+.+....++.+|.|..|+++.+.+++|..|+.
T Consensus 235 ~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 235 ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred cceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc
Confidence 02244567777777777776666677788888888888888888888876
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=5.1e-22 Score=219.76 Aligned_cols=374 Identities=13% Similarity=0.099 Sum_probs=193.4
Q ss_pred CCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchh
Q psy9363 9 GKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFV 87 (421)
Q Consensus 9 g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~ 87 (421)
|..|..+. .+++|++|+|++|.++ +.+|..++++++|++|+| .|++. +.+|..++.+++|++|+|++|.+.+..+
T Consensus 202 ~~~p~~l~-~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 202 GQIPRELG-QMKSLKWIYLGYNNLS--GEIPYEIGGLTSLNHLDLVYNNLT-GPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CcCChHHc-CcCCccEEECcCCccC--CcCChhHhcCCCCCEEECcCceec-cccChhHhCCCCCCEEECcCCeeeccCc
Confidence 33455555 4678888888888887 566777778888888888 47776 4667667777788888887665544433
Q ss_pred hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccch-h---hHH
Q psy9363 88 KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLD-E---KRR 163 (421)
Q Consensus 88 ~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~-~---~~~ 163 (421)
.. +..+++|++|++++|.+... .+..++.+++|+.|+++...........+.-+..+...... + ...
T Consensus 278 ~~---l~~l~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 278 PS---IFSLQKLISLDLSDNSLSGE------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred hh---HhhccCcCEEECcCCeeccC------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 22 44567777777777766322 33445566666666655322211111111111000000000 0 000
Q ss_pred HHHHHhCC-----CCCCcccccccCCCCceEEee-cCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEec
Q psy9363 164 AEFLEANP-----RVGDNYFQVMEDDIGLRVCDS-EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWT 237 (421)
Q Consensus 164 ~~~~~~~~-----~~~~n~~~~~~~~i~~rv~~l-~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~ 237 (421)
.......+ ....|.+.+...........+ ...+..+++.|.+|...+.+..++..++..++..|..
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~-------- 420 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL-------- 420 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--------
Confidence 00000000 111122211110000000000 0123333444444433332222222222222221111
Q ss_pred CCCCceeEEecCcccc-CchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC----C
Q psy9363 238 HSTTSGSFMRRDKLNF-GSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----D 312 (421)
Q Consensus 238 ~~~~~gsf~~~~~l~~-g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~ 312 (421)
+...+.+..+..+.. +..+...+... +........+.++.+.+... +.......+|+.+++++ +
T Consensus 421 -p~~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~~l~~L~~L~L~~n~~~~~-~p~~~~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 421 -PSEFTKLPLVYFLDISNNNLQGRINSR---------KWDMPSLQMLSLARNKFFGG-LPDSFGSKRLENLDLSRNQFSG 489 (968)
T ss_pred -ChhHhcCCCCCEEECcCCcccCccChh---------hccCCCCcEEECcCceeeee-cCcccccccceEEECcCCccCC
Confidence 100011111111110 01111000000 01112233333443322111 00010111556666654 6
Q ss_pred CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcc-cCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363 313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITT-LDSVPGMFSSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 390 (421)
.+|..+..+ ++|+.|+|++|.+. +.++..+..+++ ++|+|++|.+++ +|..+..+++|+.|+|++|++ ....+.
T Consensus 490 ~~~~~~~~l--~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~ 565 (968)
T PLN00113 490 AVPRKLGSL--SELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL-SGEIPK 565 (968)
T ss_pred ccChhhhhh--hccCEEECcCCcce-eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc-cccCCh
Confidence 778888899 99999999999998 455567778889 999999999995 565568899999999999999 444567
Q ss_pred ccCccccccccccccccCcccCCCCCCCC
Q psy9363 391 ALGSLPNLKYLNLASTNLRNIKLNKEGHY 419 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N~l~~i~~p~~~~~ 419 (421)
.+..++.|+.|++++|++.+ .+|+.+.|
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~-~~p~~~~~ 593 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHG-SLPSTGAF 593 (968)
T ss_pred hHhcCcccCEEeccCCccee-eCCCcchh
Confidence 88899999999999999997 77766554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=1e-21 Score=217.37 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=66.9
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcc-cCCCCCCCCCCcEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITT-LDSVPGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~~~l~~L~~L 376 (421)
.|+.+++++ +.++..+..+ ++|+.|+|++|.+. +.++... ..++ +.|+|++|++++ +|..+..+++|+.|
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~~~-~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 504 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDM--PSLQMLSLARNKFF-GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504 (968)
T ss_pred CCCEEECcCCcccCccChhhccC--CCCcEEECcCceee-eecCccc-ccccceEEECcCCccCCccChhhhhhhccCEE
Confidence 444444443 4445555566 66777777777665 2222222 2345 777777777763 44444677888888
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i 411 (421)
+|++|++.. ..+..++.+++|+.|+|++|.+++.
T Consensus 505 ~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 505 KLSENKLSG-EIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred ECcCCccee-eCChHHcCccCCCEEECCCCccccc
Confidence 888888843 3356778888888888888888873
No 4
>KOG2982|consensus
Probab=99.78 E-value=1.8e-19 Score=163.91 Aligned_cols=171 Identities=29% Similarity=0.359 Sum_probs=136.2
Q ss_pred CCccCcCCCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCC--CCCcc-------------
Q psy9363 2 DSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSS--SAPAH------------- 65 (421)
Q Consensus 2 ~~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~--~~p~~------------- 65 (421)
++.|..+| +...++..|+.+++|||.+|+||+|.+|..++.+||.|++|+|+ |.+.+. ..|..
T Consensus 54 ~~~id~~g-d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 54 GSIIDNEG-DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred CCCCCcch-hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 67889999 88999999999999999999999999999999999999999995 988741 22311
Q ss_pred ---------cccccccchhccccc-----------cCC------------------------------------------
Q psy9363 66 ---------SYLAEVVFFVHLGRT-----------LCD------------------------------------------ 83 (421)
Q Consensus 66 ---------~~~~~~L~~L~L~~~-----------~~~------------------------------------------ 83 (421)
...++.++.|+++.| ...
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence 123344555555422 000
Q ss_pred ------------------------cchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363 84 ------------------------EDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER 139 (421)
Q Consensus 84 ------------------------~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~ 139 (421)
++|..++. +.+||.|+.|++++||+.+...-++.|...|||++++++||+++|+.
T Consensus 213 ~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 213 TESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred chhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccch
Confidence 11334444 99999999999999999988777778889999999999999999999
Q ss_pred hhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363 140 QERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG 174 (421)
Q Consensus 140 ~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (421)
+||.++|++|.|.|+.+-.....+.++...|+++-
T Consensus 292 ~er~dSEr~fVRyym~qke~p~ky~el~~~Hg~l~ 326 (418)
T KOG2982|consen 292 RERKDSERRFVRYYMSQKELPDKYGELELLHGRLY 326 (418)
T ss_pred hhhhhhHHHHHHHHhhhhhcchhhhhHHHHccchh
Confidence 99999999999999875433456677777787773
No 5
>KOG4194|consensus
Probab=99.77 E-value=8.8e-20 Score=178.82 Aligned_cols=338 Identities=19% Similarity=0.200 Sum_probs=193.0
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L 99 (421)
.-+.||+|+|.|+.|+ +..+.++|+|+.+++ .|.++ .+|.+.+...+|+.|+|.+|+++.--.+. +..+|.|
T Consensus 79 ~t~~LdlsnNkl~~id--~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~---L~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHID--FEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEE---LSALPAL 151 (873)
T ss_pred ceeeeeccccccccCc--HHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHH---HHhHhhh
Confidence 4567999999999886 556789999999999 58888 68888878788999999998884322222 7789999
Q ss_pred ceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCcccc
Q psy9363 100 SSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQ 179 (421)
Q Consensus 100 ~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 179 (421)
++|||+.|.|+.. +...+.+-.+++.||++....-..+......+..+- ..+.+.|.++
T Consensus 152 rslDLSrN~is~i------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~---------------tlkLsrNrit 210 (873)
T KOG4194|consen 152 RSLDLSRNLISEI------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL---------------TLKLSRNRIT 210 (873)
T ss_pred hhhhhhhchhhcc------cCCCCCCCCCceEEeeccccccccccccccccchhe---------------eeecccCccc
Confidence 9999999998544 334455666789999885433222212211121110 0122223332
Q ss_pred cccCCCCce---EEeecCceeEEEEe-cccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCc
Q psy9363 180 VMEDDIGLR---VCDSEGHRGTIRYV-GSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGS 255 (421)
Q Consensus 180 ~~~~~i~~r---v~~l~~~~~~~r~~-G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~ 255 (421)
-....+..| +..++..+..+|.+ |.- . .| .-.++-..+.|++-. -+++-.||.+. +++.+....
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~lt-F-qg-L~Sl~nlklqrN~I~-kL~DG~Fy~l~--------kme~l~L~~ 278 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLT-F-QG-LPSLQNLKLQRNDIS-KLDDGAFYGLE--------KMEHLNLET 278 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhh-h-cC-chhhhhhhhhhcCcc-cccCcceeeec--------ccceeeccc
Confidence 221111122 22223344444443 111 0 00 000111111222110 01111222221 111111111
Q ss_pred hhHHHhhh--hhccccchhhhccccceeeeeecCceeEe---ecccchhhhhCCCccCCCC----CCCchhhhcCCCCCc
Q psy9363 256 SFMEALHR--KYVETDNELTVRENVEEVKASINAPFLEL---VGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHI 326 (421)
Q Consensus 256 ~~~~al~~--~y~~~~~~~~~~~~~~~~~~~~~~~~~e~---~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L 326 (421)
.-.+++.+ .|+... ++.+.++-+.++- -+|+.. +.|+.++|+. .-.+..+..+ ..|
T Consensus 279 N~l~~vn~g~lfgLt~----------L~~L~lS~NaI~rih~d~Wsft---qkL~~LdLs~N~i~~l~~~sf~~L--~~L 343 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTS----------LEQLDLSYNAIQRIHIDSWSFT---QKLKELDLSSNRITRLDEGSFRVL--SQL 343 (873)
T ss_pred chhhhhhcccccccch----------hhhhccchhhhheeecchhhhc---ccceeEeccccccccCChhHHHHH--HHh
Confidence 11112111 122221 1222233222222 233332 2455555543 3445667888 888
Q ss_pred cEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcc-cCCCC---CCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363 327 HTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITT-LDSVP---GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400 (421)
Q Consensus 327 ~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 400 (421)
++|.|++|.++ ..+ ..+..+.+ ++|+|++|.|+. |+... ..++.|+.|.|.+|+|..++ -.++..+++|++
T Consensus 344 e~LnLs~Nsi~~l~e--~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~-krAfsgl~~LE~ 420 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAE--GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP-KRAFSGLEALEH 420 (873)
T ss_pred hhhcccccchHHHHh--hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc-hhhhccCcccce
Confidence 89999999988 333 44566777 899999999983 44432 66899999999999998876 568899999999
Q ss_pred cccccccCcccCCCCC
Q psy9363 401 LNLASTNLRNIKLNKE 416 (421)
Q Consensus 401 L~Ls~N~l~~i~~p~~ 416 (421)
|||.+|.|..|.+.+.
T Consensus 421 LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAF 436 (873)
T ss_pred ecCCCCcceeeccccc
Confidence 9999999998877654
No 6
>KOG0444|consensus
Probab=99.70 E-value=7.9e-19 Score=173.27 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=48.6
Q ss_pred CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccc
Q psy9363 313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNA 391 (421)
Q Consensus 313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 391 (421)
.+|..+..+ .+|..+|||+|.+. .+|.++..+++ +.|+||+|+|+++....+.+.+|++|+||+|+++.+ |..
T Consensus 213 N~Ptsld~l--~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L--P~a 286 (1255)
T KOG0444|consen 213 NIPTSLDDL--HNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL--PDA 286 (1255)
T ss_pred cCCCchhhh--hhhhhccccccCCC--cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc--hHH
Confidence 344445555 55555555555553 33445555555 555555555555444344455555555555555443 234
Q ss_pred cCccccccccccccccCcccCCC
Q psy9363 392 LGSLPNLKYLNLASTNLRNIKLN 414 (421)
Q Consensus 392 l~~l~~L~~L~Ls~N~l~~i~~p 414 (421)
++.++.|+.|.+.+|+++---+|
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCc
Confidence 55555555555555555443444
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.67 E-value=2.1e-17 Score=144.21 Aligned_cols=130 Identities=25% Similarity=0.291 Sum_probs=67.8
Q ss_pred HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCccc-ccccccchhccccccCCcchhhHHH
Q psy9363 14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHS-YLAEVVFFVHLGRTLCDEDFVKEGS 91 (421)
Q Consensus 14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~-~~~~~L~~L~L~~~~~~~~~~~~~~ 91 (421)
.+...+.+|+.||||+|.|++++.++. |++|+.|++ +|+++. ++... ..+++|++|+|++|.+ .++.++..
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l~~l~~----L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~ 108 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKLEGLPG----LPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKI-SDLNELEP 108 (175)
T ss_dssp S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS----SCCCCGG
T ss_pred chhhhhcCCCEEECCCCCCccccCccC----hhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcC-CChHHhHH
Confidence 345567899999999999998877665 899999999 599984 43322 3689999999988877 33445555
Q ss_pred HHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhc
Q psy9363 92 LLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFG 154 (421)
Q Consensus 92 ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~ 154 (421)
+..+|+|++|+|.+||++.. ..||.++|+.+|+|++||+..|+++||+.|+..|-...+
T Consensus 109 -L~~l~~L~~L~L~~NPv~~~---~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~~~~~ 167 (175)
T PF14580_consen 109 -LSSLPKLRVLSLEGNPVCEK---KNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKLFKGKRA 167 (175)
T ss_dssp -GGG-TT--EEE-TT-GGGGS---TTHHHHHHHH-TT-SEETTEETTS-B-------------
T ss_pred -HHcCCCcceeeccCCcccch---hhHHHHHHHHcChhheeCCEEccHHHhcccccccccccc
Confidence 78899999999999999765 699999999999999999999999999999988876544
No 8
>KOG0472|consensus
Probab=99.66 E-value=2.4e-18 Score=162.24 Aligned_cols=101 Identities=22% Similarity=0.255 Sum_probs=83.4
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEE
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELY 377 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~ 377 (421)
+|..+++++ .++|..++.+ ..|+.|++|+|+|. .+|+++..+.. +.+-.++|++..+++. ++.|.+|+.||
T Consensus 436 kLt~L~L~NN~Ln~LP~e~~~l--v~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPEEMGSL--VRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred cceeeecccchhhhcchhhhhh--hhhheecccccccc--cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 777777877 7788888888 88999999999886 44566655444 6666677999888876 58999999999
Q ss_pred CcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
|.+|.|..+ |..++++.+|++|++++|+++
T Consensus 512 L~nNdlq~I--Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 512 LQNNDLQQI--PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cCCCchhhC--ChhhccccceeEEEecCCccC
Confidence 999999885 458999999999999999998
No 9
>KOG3207|consensus
Probab=99.66 E-value=7.8e-17 Score=153.70 Aligned_cols=153 Identities=32% Similarity=0.420 Sum_probs=110.5
Q ss_pred CCccCcCCCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcc---------------
Q psy9363 2 DSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAH--------------- 65 (421)
Q Consensus 2 ~~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~--------------- 65 (421)
+++|.++|+. +..+.|++++.||||.|+|+.|..|..++++||+|+.|+| +|+|.. ...+.
T Consensus 130 n~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-~~~s~~~~~l~~lK~L~l~~ 206 (505)
T KOG3207|consen 130 NYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-FISSNTTLLLSHLKQLVLNS 206 (505)
T ss_pred Cccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-CccccchhhhhhhheEEecc
Confidence 5789999943 6778999999999999999999999999999999999999 599973 11110
Q ss_pred -----------cccccccc------------------------hhccccc-cCCcc-------hh---------------
Q psy9363 66 -----------SYLAEVVF------------------------FVHLGRT-LCDED-------FV--------------- 87 (421)
Q Consensus 66 -----------~~~~~~L~------------------------~L~L~~~-~~~~~-------~~--------------- 87 (421)
...|++|. .|+|++| +++-+ ++
T Consensus 207 CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 207 CGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred CCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence 01233444 4444322 11111 11
Q ss_pred -----hHHHHHhhCCCCceeeecCCCCCCcccc-----------------------chhHHHHHHhccCceeccCCccCh
Q psy9363 88 -----KEGSLLHYLPKLSSLRFTKNPILAEERV-----------------------VSSREKTIARLGGLKLLNGSAIER 139 (421)
Q Consensus 88 -----~~~~ll~~l~~L~~L~l~~N~l~~~~~~-----------------------~~~~~~~i~~l~~L~~ln~s~i~~ 139 (421)
++......+|+|++|.+.+|++.+..+. ..++..+||++++|..||...|.+
T Consensus 287 ~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p 366 (505)
T KOG3207|consen 287 AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISP 366 (505)
T ss_pred cCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccCh
Confidence 1111156799999999999998444321 123345899999999999999999
Q ss_pred hhhhccHHHHHHh-hcccc
Q psy9363 140 QERQGSEYDYIKE-FGAVW 157 (421)
Q Consensus 140 ~~r~~ae~~~l~~-~~~~~ 157 (421)
.||++||++|++. ++.+|
T Consensus 367 ~eRR~AEl~~~~~~~~ne~ 385 (505)
T KOG3207|consen 367 NERRDAELYYLSKIFDNEI 385 (505)
T ss_pred HHhhhhhhhHHhhhhhhhh
Confidence 9999999999988 55444
No 10
>KOG4194|consensus
Probab=99.65 E-value=4.7e-17 Score=159.89 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=90.7
Q ss_pred eeeeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccch--hhHHHHhccCCC-cEE
Q psy9363 281 VKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIW--ADILKLLANFPV-TCL 353 (421)
Q Consensus 281 ~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~--~~i~~~~~~l~~-~~L 353 (421)
+.+.++.+.+....-..+....+|+.+.|++ ..-...|..+ ++|+.|||++|.|+| ++....+..+|+ +.|
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l--ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL--SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh--hhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 3344555555544444444334677777765 2223458889 999999999999994 344455677999 999
Q ss_pred EccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccccccc
Q psy9363 354 KLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAS 405 (421)
Q Consensus 354 ~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~ 405 (421)
+|-+|+|+.|+... ..++.|++|||.+|.|.++. +.+|..+ .|++|.++.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq-~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ-PNAFEPM-ELKELVMNS 448 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeec-ccccccc-hhhhhhhcc
Confidence 99999999998654 88999999999999999887 7788888 888887654
No 11
>KOG0444|consensus
Probab=99.62 E-value=1.8e-17 Score=163.74 Aligned_cols=97 Identities=24% Similarity=0.274 Sum_probs=78.9
Q ss_pred CCccCcCCCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCc-ccccccccchhcccc
Q psy9363 2 DSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPA-HSYLAEVVFFVHLGR 79 (421)
Q Consensus 2 ~~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~-~~~~~~~L~~L~L~~ 79 (421)
+++++++| +|.+|.. +.-|+.||||+|+++ ++|..+..-+++-+|+|| |++.. ||. ...+++-|-+|||++
T Consensus 87 ~N~LKnsG-iP~diF~-l~dLt~lDLShNqL~---EvP~~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 87 DNNLKNSG-IPTDIFR-LKDLTILDLSHNQLR---EVPTNLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred ccccccCC-CCchhcc-cccceeeecchhhhh---hcchhhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhcccc
Confidence 46788999 9999985 689999999999997 788888889999999995 88884 443 234667788999999
Q ss_pred ccCCcchhhHHHHHhhCCCCceeeecCCCC
Q psy9363 80 TLCDEDFVKEGSLLHYLPKLSSLRFTKNPI 109 (421)
Q Consensus 80 ~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l 109 (421)
|.+.--++. .+++..|++|.|++||+
T Consensus 160 NrLe~LPPQ----~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 160 NRLEMLPPQ----IRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred chhhhcCHH----HHHHhhhhhhhcCCChh
Confidence 988444555 45689999999999998
No 12
>KOG0618|consensus
Probab=99.59 E-value=8.6e-17 Score=165.44 Aligned_cols=372 Identities=18% Similarity=0.155 Sum_probs=195.7
Q ss_pred ChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhH
Q psy9363 11 THDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKE 89 (421)
Q Consensus 11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~ 89 (421)
.|-+..+.|-+|+.||||+|+++++ |..+..+++|+.|++ +|.+. ..|.......+|++|.|.+|...-.+..+
T Consensus 36 ~pl~~~~~~v~L~~l~lsnn~~~~f---p~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 36 RPLEFVEKRVKLKSLDLSNNQISSF---PIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQSLPASI 110 (1081)
T ss_pred CchHHhhheeeeEEeeccccccccC---CchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhhcCchhH
Confidence 3456666777899999999999976 444566889999999 58887 46777788899999999988875555554
Q ss_pred HHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHH----HHHhh---ccccchhhH
Q psy9363 90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYD----YIKEF---GAVWLDEKR 162 (421)
Q Consensus 90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~----~l~~~---~~~~~~~~~ 162 (421)
..+.+|++|+++.|.+... |.+|-.+..+..++.+.. .+..+-.+.. +++.. +.+..+
T Consensus 111 ----~~lknl~~LdlS~N~f~~~-------Pl~i~~lt~~~~~~~s~N-~~~~~lg~~~ik~~~l~~n~l~~~~~~~--- 175 (1081)
T KOG0618|consen 111 ----SELKNLQYLDLSFNHFGPI-------PLVIEVLTAEEELAASNN-EKIQRLGQTSIKKLDLRLNVLGGSFLID--- 175 (1081)
T ss_pred ----HhhhcccccccchhccCCC-------chhHHhhhHHHHHhhhcc-hhhhhhccccchhhhhhhhhcccchhcc---
Confidence 4589999999999998543 456666666666665533 1110000000 11100 000000
Q ss_pred HHHHHHhCCCCCCcccccccCCCCceEEe--e-cCceeEEEEecccCCCCC--cEEEEEecCCCCCCCCCeeCCEEeEec
Q psy9363 163 RAEFLEANPRVGDNYFQVMEDDIGLRVCD--S-EGHRGTIRYVGSVEGTQG--VWYGIDWDSETRGKHDGSHNGVKYFWT 237 (421)
Q Consensus 163 ~~~~~~~~~~~~~n~~~~~~~~i~~rv~~--l-~~~~~~~r~~G~ip~~~g--~~~gle~d~~~~g~~~G~~~g~~~f~~ 237 (421)
... ........+|.+...+......+.. + ...+....++|+--.+.- ...-.. -...+..+..+|+.-
T Consensus 176 i~~-l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~------~~~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 176 IYN-LTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT------LDVHPVPLNLQYLDI 248 (1081)
T ss_pred hhh-hheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCccee------eccccccccceeeec
Confidence 000 0001122223333111111111110 1 124555555555432210 000000 011112222233321
Q ss_pred C-------CCCceeEEecCccccCchhHHHhhhhhccccchh-------------hh-ccccceeeeeecCceeEeec--
Q psy9363 238 H-------STTSGSFMRRDKLNFGSSFMEALHRKYVETDNEL-------------TV-RENVEEVKASINAPFLELVG-- 294 (421)
Q Consensus 238 ~-------~~~~gsf~~~~~l~~g~~~~~al~~~y~~~~~~~-------------~~-~~~~~~~~~~~~~~~~e~~g-- 294 (421)
. +.-.+..+.++.+..+.+...++..+.......- .+ .......++.+.++.+-...
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~ 328 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDN 328 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchH
Confidence 1 1122334444555444333344433322111000 00 00111111211111100000
Q ss_pred c-cchhh--------------------hh--CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhc
Q psy9363 295 F-DQVHE--------------------EQ--NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLA 346 (421)
Q Consensus 295 ~-~~l~~--------------------~~--~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~ 346 (421)
+ ..... .. .|+.+.+++ +..=+.+..+ ++|+.|+|++|++. +++ ..+.
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~--~hLKVLhLsyNrL~~fpa--s~~~ 404 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF--KHLKVLHLSYNRLNSFPA--SKLR 404 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc--cceeeeeecccccccCCH--HHHh
Confidence 0 00000 00 111222322 2222346677 99999999999998 655 6678
Q ss_pred cCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCCCCC
Q psy9363 347 NFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKE 416 (421)
Q Consensus 347 ~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p~~ 416 (421)
.++. ++|+||+|+++.||..+..+..|++|...+|+|..++ .+..++.|+.+|+|.|+|+.+.+|..
T Consensus 405 kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP---e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP---ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech---hhhhcCcceEEecccchhhhhhhhhh
Confidence 8888 9999999999999977777778888888888876654 46677888888888888877766643
No 13
>KOG0472|consensus
Probab=99.49 E-value=2e-16 Score=149.46 Aligned_cols=97 Identities=22% Similarity=0.215 Sum_probs=82.5
Q ss_pred CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 312 ~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 390 (421)
+-+|..++.+ ++|+.|+|++|.+. ++|.-++.+.. +.|+++.|+|..+|..+..+..++.+-.++|++...+ +.
T Consensus 425 sfv~~~l~~l--~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd-~~ 499 (565)
T KOG0472|consen 425 SFVPLELSQL--QKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD-PS 499 (565)
T ss_pred ccchHHHHhh--hcceeeecccchhh--hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccC-hH
Confidence 5678889999 99999999999998 44556666677 9999999999999976666777888888889998876 66
Q ss_pred ccCccccccccccccccCcccCC
Q psy9363 391 ALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
.+.++.+|.+|||.+|.+..||+
T Consensus 500 ~l~nm~nL~tLDL~nNdlq~IPp 522 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQQIPP 522 (565)
T ss_pred HhhhhhhcceeccCCCchhhCCh
Confidence 79999999999999999997654
No 14
>KOG1644|consensus
Probab=99.37 E-value=1.1e-13 Score=120.08 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=105.0
Q ss_pred HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHH
Q psy9363 14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSL 92 (421)
Q Consensus 14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~l 92 (421)
.++........+||++|.+...+.+|. +++|.+|.| +|++.. .-|.....+++|+.|.|.+|.+ -.+.++..
T Consensus 36 nlg~~~d~~d~iDLtdNdl~~l~~lp~----l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~p- 108 (233)
T KOG1644|consen 36 NLGATLDQFDAIDLTDNDLRKLDNLPH----LPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSI-QELGDLDP- 108 (233)
T ss_pred hccccccccceecccccchhhcccCCC----ccccceEEecCCccee-eccchhhhccccceEEecCcch-hhhhhcch-
Confidence 345566688999999999997766655 999999999 589984 3344445678899999977655 34556666
Q ss_pred HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHH
Q psy9363 93 LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDY 149 (421)
Q Consensus 93 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~ 149 (421)
++.||+|++|.+-+||++.. ..||.++++++|+|++||+..|+.+||+.|+-++
T Consensus 109 La~~p~L~~Ltll~Npv~~k---~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHK---KNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred hccCCccceeeecCCchhcc---cCceeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence 88999999999999999776 5899999999999999999999999999998877
No 15
>KOG4237|consensus
Probab=99.31 E-value=2.2e-13 Score=128.83 Aligned_cols=300 Identities=19% Similarity=0.159 Sum_probs=168.7
Q ss_pred CccCcCCCChhHHhhhC-CCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhcc-cc
Q psy9363 3 SRVSNAGKTHDEIEQAV-PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHL-GR 79 (421)
Q Consensus 3 ~~i~~~g~~~~~~~~~~-~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L-~~ 79 (421)
+.|.|.|....++-..+ +.-++|+|..|.|++++ +.+++++++|+.|||+ |.++-+. |.....+.+|..|.| ++
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCC--hhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcC
Confidence 44555554333443333 36889999999999764 5688999999999995 8888433 333334466666666 55
Q ss_pred ccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccch
Q psy9363 80 TLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLD 159 (421)
Q Consensus 80 ~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~ 159 (421)
|.+..-+... ++.|.+|+-|.+.-|.+ .=.|+.++..+++|..|.+-.... ..+.
T Consensus 126 NkI~~l~k~~---F~gL~slqrLllNan~i------~Cir~~al~dL~~l~lLslyDn~~--------------q~i~-- 180 (498)
T KOG4237|consen 126 NKITDLPKGA---FGGLSSLQRLLLNANHI------NCIRQDALRDLPSLSLLSLYDNKI--------------QSIC-- 180 (498)
T ss_pred CchhhhhhhH---hhhHHHHHHHhcChhhh------cchhHHHHHHhhhcchhcccchhh--------------hhhc--
Confidence 6664444443 77888888888888887 456788888888887665522111 1000
Q ss_pred hhHHHHHHHhCCCCCCcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCC
Q psy9363 160 EKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239 (421)
Q Consensus 160 ~~~~~~~~~~~~~~~~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~ 239 (421)
+ -.+.+ ...+..+. .+.+.++. -..+.|...--....-...|. .|..
T Consensus 181 ----------~-----~tf~~--l~~i~tlh-----lA~np~ic--------dCnL~wla~~~a~~~ietsga---rc~~ 227 (498)
T KOG4237|consen 181 ----------K-----GTFQG--LAAIKTLH-----LAQNPFIC--------DCNLPWLADDLAMNPIETSGA---RCVS 227 (498)
T ss_pred ----------c-----ccccc--hhccchHh-----hhcCcccc--------ccccchhhhHHhhchhhcccc---eecc
Confidence 0 00000 00000000 11111100 011222110000011111111 1111
Q ss_pred CCceeEEecCccccCchh---HHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCC-Cc
Q psy9363 240 TTSGSFMRRDKLNFGSSF---MEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDT-SG 315 (421)
Q Consensus 240 ~~~gsf~~~~~l~~g~~~---~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~-~~ 315 (421)
+..-..+|...+..+ .| .+.+.+++...+. ++ .. +.
T Consensus 228 p~rl~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~------------------------------------~d---~~cP~ 267 (498)
T KOG4237|consen 228 PYRLYYKRINQEDAR-KFLCSLESLPSRLSSEDF------------------------------------PD---SICPA 267 (498)
T ss_pred hHHHHHHHhcccchh-hhhhhHHhHHHhhccccC------------------------------------cC---CcChH
Confidence 111111111111111 11 1112222222211 00 12 23
Q ss_pred hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCccccc
Q psy9363 316 VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNAL 392 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l 392 (421)
..|..+ ++|+.|+|++|+|+ ..+ ..+..... ++|+|..|+|..+.... ..+.+|+.|+|.+|+|+... +..|
T Consensus 268 ~cf~~L--~~L~~lnlsnN~i~~i~~--~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-~~aF 342 (498)
T KOG4237|consen 268 KCFKKL--PNLRKLNLSNNKITRIED--GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-PGAF 342 (498)
T ss_pred HHHhhc--ccceEeccCCCccchhhh--hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe-cccc
Confidence 458899 99999999999998 322 55667777 99999999998776544 78899999999999998776 6688
Q ss_pred CccccccccccccccC
Q psy9363 393 GSLPNLKYLNLASTNL 408 (421)
Q Consensus 393 ~~l~~L~~L~Ls~N~l 408 (421)
..+..|.+|+|-.|.+
T Consensus 343 ~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccceeeeeehccCcc
Confidence 8888999999988876
No 16
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.28 E-value=1.3e-11 Score=90.54 Aligned_cols=64 Identities=42% Similarity=0.835 Sum_probs=54.3
Q ss_pred CCceEEee---cCceeEEEEecccC-CCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcc
Q psy9363 185 IGLRVCDS---EGHRGTIRYVGSVE-GTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251 (421)
Q Consensus 185 i~~rv~~l---~~~~~~~r~~G~ip-~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l 251 (421)
+++||. + ....+++||+|+++ ...|.|+|||||+. +|+++|+++|.+||.|. +.+|.|++++++
T Consensus 1 VG~rV~-v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~-~G~~dGt~~G~rYF~c~-~~~G~Fv~~~~v 68 (69)
T PF01302_consen 1 VGDRVR-VDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEP-RGKNDGTVKGKRYFECP-PNHGIFVRPSKV 68 (69)
T ss_dssp TTSEEE-ESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSS-TSSBSSEETTEESS-SS-TTTEEEEEGGGE
T ss_pred CCCEEE-EeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCC-CCCCCcEECCEEEeeeC-CCCEEEecHHHC
Confidence 467877 5 45899999999999 55679999999766 69999999999999996 999999999875
No 17
>KOG0618|consensus
Probab=99.26 E-value=1.2e-12 Score=135.40 Aligned_cols=81 Identities=21% Similarity=0.130 Sum_probs=58.9
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L 99 (421)
+|+++|+|.|.++ .+|.+++.+++|+.|++ .|+|. .+|..+...++|+.|....|-+.--++. +..+..|
T Consensus 242 nl~~~dis~n~l~---~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~----le~~~sL 312 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS---NLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPF----LEGLKSL 312 (1081)
T ss_pred cceeeecchhhhh---cchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCc----cccccee
Confidence 5788888888887 34677788888888888 47775 5676666777888888877755332332 4458888
Q ss_pred ceeeecCCCCC
Q psy9363 100 SSLRFTKNPIL 110 (421)
Q Consensus 100 ~~L~l~~N~l~ 110 (421)
++|+|+.|.|.
T Consensus 313 ~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 313 RTLDLQSNNLP 323 (1081)
T ss_pred eeeeehhcccc
Confidence 88888888873
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=2e-11 Score=128.99 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363 324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 401 (421)
++|+.|+|++|.|+ ++. ..+. +.|++++|+|+.+|.. +.+|+.|+|++|+|+.+ +..+..+++|+.|
T Consensus 382 ~~L~~LdLs~N~Lt~LP~------l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~L--P~sl~~L~~L~~L 450 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRL--PESLIHLSSETTV 450 (788)
T ss_pred cccceEEecCCcccCCCC------cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccccc--ChHHhhccCCCeE
Confidence 56777888888877 221 1234 7788888888777642 34677788888888654 3457777788888
Q ss_pred ccccccCccc
Q psy9363 402 NLASTNLRNI 411 (421)
Q Consensus 402 ~Ls~N~l~~i 411 (421)
+|++|+|++.
T Consensus 451 dLs~N~Ls~~ 460 (788)
T PRK15387 451 NLEGNPLSER 460 (788)
T ss_pred ECCCCCCCch
Confidence 8888887754
No 19
>KOG3206|consensus
Probab=99.10 E-value=1.4e-10 Score=99.81 Aligned_cols=74 Identities=41% Similarity=0.755 Sum_probs=66.3
Q ss_pred CCCCceEEeec--C---ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363 183 DDIGLRVCDSE--G---HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF 257 (421)
Q Consensus 183 ~~i~~rv~~l~--~---~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~ 257 (421)
..+|.|+. +. + +.++++|+|+.+...|.|+||++|++. ||++|++.|++||.|. +.+|+|++|..+..| +|
T Consensus 149 i~vG~rCe-Vtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEpl-GKnDGsv~G~ryF~c~-p~yGgfVrP~~V~Vg-df 224 (234)
T KOG3206|consen 149 IAVGRRCE-VTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPL-GKNDGSVNGKRYFECA-PKYGGFVRPRAVTVG-DF 224 (234)
T ss_pred cccCCeeE-EecCCCCCcceEEEEecccCCCCceEEEEecCCcc-ccCCCcccceEeeecC-CccCCccccceeeec-CC
Confidence 56888877 42 2 899999999999999999999999999 9999999999999996 899999999999888 67
Q ss_pred HHH
Q psy9363 258 MEA 260 (421)
Q Consensus 258 ~~a 260 (421)
|+.
T Consensus 225 pee 227 (234)
T KOG3206|consen 225 PEE 227 (234)
T ss_pred Chh
Confidence 763
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=4.9e-10 Score=108.24 Aligned_cols=123 Identities=18% Similarity=0.039 Sum_probs=84.2
Q ss_pred hhHHhhhCCCCcEEECCCCCCCCh--hhHHHHHhcCCCCceeec-ccccCC--C---CCCcccccccccchhccccccCC
Q psy9363 12 HDEIEQAVPFIEDLDLSRNLLASW--FAVGEITCQLKHLRHLNL-RIRLKS--S---SAPAHSYLAEVVFFVHLGRTLCD 83 (421)
Q Consensus 12 ~~~~~~~~~~L~~L~Ls~N~ls~~--~~i~~~~~~l~~L~~L~L-~N~l~~--~---~~p~~~~~~~~L~~L~L~~~~~~ 83 (421)
-.++...++.|+.|+|+++.++.- ..++..+...++|+.|++ .+.+.+ . .++..++.+++|+.|+|++|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 345566778899999999999742 357777888899999999 476652 0 11223445779999999887775
Q ss_pred cch-hhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhc-cCceeccCCcc
Q psy9363 84 EDF-VKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARL-GGLKLLNGSAI 137 (421)
Q Consensus 84 ~~~-~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l-~~L~~ln~s~i 137 (421)
... ..+..+... ++|++|++++|.+.... .......+..+ ++|+.|+++..
T Consensus 95 ~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~--~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 95 PDGCGVLESLLRS-SSLQELKLNNNGLGDRG--LRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred hhHHHHHHHHhcc-CcccEEEeeCCccchHH--HHHHHHHHHhCCCCceEEEcCCC
Confidence 433 233332333 66999999999985321 12233456777 89999998753
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.99 E-value=2.5e-09 Score=120.27 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=60.8
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY 377 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~ 377 (421)
+|+.|.|.+ +.+|... .+ ++|+.|+|++|..- ..++ ....+ +.|+|++|.|+.+|..+..+++|+.|+
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~-~L--~sL~~L~Ls~c~~L-~~~p---~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGI-NL--ESLESLDLSGCSRL-RTFP---DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCC-Cc--cccCEEECCCCCcc-cccc---ccccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence 555666553 3344433 45 77777777776432 1111 12245 788888888888887777888888888
Q ss_pred CcC-CCCCCCCcccccCcccccccccccccc
Q psy9363 378 LQE-NNIVDWGEVNALGSLPNLKYLNLASTN 407 (421)
Q Consensus 378 Ls~-N~l~~~~~~~~l~~l~~L~~L~Ls~N~ 407 (421)
|++ |++..++ ..+..++.|+.++++++.
T Consensus 876 L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 876 MNGCNNLQRVS--LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcCccC--cccccccCCCeeecCCCc
Confidence 877 5565543 345667777777777663
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=1.8e-10 Score=100.74 Aligned_cols=86 Identities=30% Similarity=0.472 Sum_probs=48.1
Q ss_pred hcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363 319 QIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSL 395 (421)
Q Consensus 319 ~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 395 (421)
..+ .+|+.|+|++|.|+ .. .+..++. ++|++++|+|+.++..+ ..+++|++|+|++|+|.++.++..++.+
T Consensus 39 ~~l--~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 39 ATL--DKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSL 112 (175)
T ss_dssp TT---TT--EEE-TTS--S--T----T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-
T ss_pred hhh--cCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcC
Confidence 357 89999999999998 43 2445778 99999999999986434 4689999999999999999988899999
Q ss_pred ccccccccccccCcc
Q psy9363 396 PNLKYLNLASTNLRN 410 (421)
Q Consensus 396 ~~L~~L~Ls~N~l~~ 410 (421)
|+|+.|+|.+|+++.
T Consensus 113 ~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 113 PKLRVLSLEGNPVCE 127 (175)
T ss_dssp TT--EEE-TT-GGGG
T ss_pred CCcceeeccCCcccc
Confidence 999999999999985
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.94 E-value=8.2e-10 Score=117.29 Aligned_cols=75 Identities=17% Similarity=0.064 Sum_probs=47.0
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L 99 (421)
+...|+|+++.+++++. .+ .+.|+.|+| +|+++. +|.. .+++|++|+|++|.+..-+..+ .+.|
T Consensus 179 ~~~~L~L~~~~LtsLP~---~I--p~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~LtsLP~~l------~~~L 243 (754)
T PRK15370 179 NKTELRLKILGLTTIPA---CI--PEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQLTSIPATL------PDTI 243 (754)
T ss_pred CceEEEeCCCCcCcCCc---cc--ccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCccccCChhh------hccc
Confidence 46788888888875432 12 246788888 477773 4543 2357888888766654222211 3467
Q ss_pred ceeeecCCCCC
Q psy9363 100 SSLRFTKNPIL 110 (421)
Q Consensus 100 ~~L~l~~N~l~ 110 (421)
+.|+|++|.+.
T Consensus 244 ~~L~Ls~N~L~ 254 (754)
T PRK15370 244 QEMELSINRIT 254 (754)
T ss_pred cEEECcCCccC
Confidence 88888888774
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.92 E-value=6e-09 Score=110.42 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=60.0
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 402 (421)
++|+.|++++|.|+ .++. ..++ +.|+|++|+|+.+|.. .++|+.|++++|+|+.++. ...+|+.|+
T Consensus 362 ~~L~~L~Ls~N~L~--~LP~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~-----l~~~L~~L~ 428 (788)
T PRK15387 362 SELYKLWAYNNRLT--SLPA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM-----LPSGLLSLS 428 (788)
T ss_pred cccceehhhccccc--cCcc---cccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc-----chhhhhhhh
Confidence 67888999999998 2222 2345 8999999999988753 4689999999999987542 245789999
Q ss_pred cccccCcccC
Q psy9363 403 LASTNLRNIK 412 (421)
Q Consensus 403 Ls~N~l~~i~ 412 (421)
+++|+|+.+|
T Consensus 429 Ls~NqLt~LP 438 (788)
T PRK15387 429 VYRNQLTRLP 438 (788)
T ss_pred hccCcccccC
Confidence 9999999653
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=2.7e-09 Score=102.99 Aligned_cols=93 Identities=24% Similarity=0.212 Sum_probs=68.4
Q ss_pred hhhhcCCCCCccEEEeeCcccc---hhhHHHHhccCCC-cEEEccCCcCcccCC-CC-----CCCCCCcEEECcCCCCCC
Q psy9363 316 VMEQIFPQGHIHTLTLGNMGYI---WADILKLLANFPV-TCLKLPSNRITTLDS-VP-----GMFSSLEELYLQENNIVD 385 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~l~---~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~-----~~l~~L~~L~Ls~N~l~~ 385 (421)
..+..+ ++|+.|+|++|.++ ...+...+..+++ ++|++++|.++.... .+ ...+.|+.|++++|.+++
T Consensus 187 ~~l~~~--~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 187 EGLKAN--CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHhC--CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 344566 79999999999997 2334556677888 999999999984211 11 124799999999999963
Q ss_pred CC---cccccCccccccccccccccCcc
Q psy9363 386 WG---EVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 386 ~~---~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
.. ....+..+++|+.+++++|.++.
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 22 12345567899999999999985
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.82 E-value=1.1e-08 Score=108.81 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=62.4
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCc--ccccCccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGE--VNALGSLPNLKY 400 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~l~~L~~ 400 (421)
++|+.|+|++|.|+ .++..+ .+. +.|+|++|.|+.+|..+ ...|+.|++++|+|..++. +...+.++.+..
T Consensus 346 ~sL~~L~Ls~N~L~--~LP~~l--p~~L~~LdLs~N~Lt~LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 346 PELQVLDVSKNQIT--VLPETL--PPTITTLDVSRNALTNLPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTR 419 (754)
T ss_pred CcccEEECCCCCCC--cCChhh--cCCcCEEECCCCcCCCCCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccE
Confidence 68999999999998 122212 245 99999999999998654 2479999999999987652 123345688999
Q ss_pred cccccccCccc
Q psy9363 401 LNLASTNLRNI 411 (421)
Q Consensus 401 L~Ls~N~l~~i 411 (421)
|++.+|+++.-
T Consensus 420 L~L~~Npls~~ 430 (754)
T PRK15370 420 IIVEYNPFSER 430 (754)
T ss_pred EEeeCCCccHH
Confidence 99999998643
No 27
>KOG4237|consensus
Probab=98.81 E-value=3.7e-10 Score=107.25 Aligned_cols=94 Identities=20% Similarity=0.105 Sum_probs=70.2
Q ss_pred ChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-c-cccCCCCCCc-ccccccccchhccccccCCcchh
Q psy9363 11 THDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-R-IRLKSSSAPA-HSYLAEVVFFVHLGRTLCDEDFV 87 (421)
Q Consensus 11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~-N~l~~~~~p~-~~~~~~~L~~L~L~~~~~~~~~~ 87 (421)
.|+..++.+++|+.||||+|.|+.+ -|+.+.-|++|..|-+ + |+++. +|. ..+.+.+|+.|.|+-|.+.--..
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~NkI~~--l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNNKITD--LPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred CChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCCchhh--hhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 5667778899999999999999944 4677888999999998 6 99983 454 34567788888887665533333
Q ss_pred hHHHHHhhCCCCceeeecCCCCCC
Q psy9363 88 KEGSLLHYLPKLSSLRFTKNPILA 111 (421)
Q Consensus 88 ~~~~ll~~l~~L~~L~l~~N~l~~ 111 (421)
+. +..+++|.-|.+.+|.+..
T Consensus 158 ~a---l~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 158 DA---LRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred HH---HHHhhhcchhcccchhhhh
Confidence 32 6668888888888887643
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=9.4e-09 Score=73.90 Aligned_cols=59 Identities=36% Similarity=0.600 Sum_probs=50.1
Q ss_pred CC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccccccccccC
Q psy9363 349 PV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408 (421)
Q Consensus 349 ~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l 408 (421)
|+ ++|++++|+|+.+|... ..+++|++|++++|.++.++ +..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCcC
Confidence 45 78999999999888654 88899999999999997765 56888999999999999976
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=8e-08 Score=108.26 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=59.7
Q ss_pred hhCCCCcEEECCCCC-CCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363 17 QAVPFIEDLDLSRNL-LASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH 94 (421)
Q Consensus 17 ~~~~~L~~L~Ls~N~-ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~ 94 (421)
..+++|+.|+|+++. +. .+|. ++.+++|+.|+|+ |... ..+|..++.+++|+.|+|++|..-..++.. .
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~---~ip~-ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i 701 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLK---EIPD-LSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTG----I 701 (1153)
T ss_pred ccCCCCCEEECCCCCCcC---cCCc-cccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCc----C
Confidence 357899999999765 54 3343 6678999999994 4333 367877888899999999776432333321 1
Q ss_pred hCCCCceeeecCCCC
Q psy9363 95 YLPKLSSLRFTKNPI 109 (421)
Q Consensus 95 ~l~~L~~L~l~~N~l 109 (421)
.+++|+.|+|++|..
T Consensus 702 ~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 702 NLKSLYRLNLSGCSR 716 (1153)
T ss_pred CCCCCCEEeCCCCCC
Confidence 578899999988864
No 30
>KOG0617|consensus
Probab=98.65 E-value=3e-09 Score=90.44 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=67.7
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEEC
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYL 378 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~L 378 (421)
+++++.+++ ..+|+-+..+ .+|+.|++++|.|. +.|..++.+|+ +.|+++-|++..+|..++.++.|+.|||
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l--~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAEL--KNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCceeecCCcHHHh--hhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 344555555 4556666677 77777777777775 33455666677 7777777777777777777777777777
Q ss_pred cCCCCCCCCcccccCccccccccccccccCcc
Q psy9363 379 QENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 379 s~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
..|++..-..+..|-.+..|+.|+|++|.+.-
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~ 141 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEI 141 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCccc
Confidence 77777554444455556666666666666654
No 31
>KOG2123|consensus
Probab=98.63 E-value=1.4e-08 Score=92.61 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=95.5
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
.+++.|++=+..|+++ .++..||.||+|.|| |++++ +. .+..|++|++|+|..|-+ .++.++.. |..+|+
T Consensus 19 ~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIss--L~-pl~rCtrLkElYLRkN~I-~sldEL~Y-Lknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISS--LA-PLQRCTRLKELYLRKNCI-ESLDELEY-LKNLPS 89 (388)
T ss_pred HHhhhhcccCCCccHH----HHHHhcccceeEEeecccccc--ch-hHHHHHHHHHHHHHhccc-ccHHHHHH-HhcCch
Confidence 4788899988889853 467789999999997 99984 22 245899999999976555 35566666 899999
Q ss_pred CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhcc
Q psy9363 99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGS 145 (421)
Q Consensus 99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~a 145 (421)
|+.|.|..||.++. +...||..++--+|+|+.||-..|+++|.++|
T Consensus 90 Lr~LWL~ENPCc~~-ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 90 LRTLWLDENPCCGE-AGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA 135 (388)
T ss_pred hhhHhhccCCcccc-cchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence 99999999996544 46789999999999999999999999988666
No 32
>KOG0617|consensus
Probab=98.63 E-value=3.3e-09 Score=90.17 Aligned_cols=93 Identities=24% Similarity=0.264 Sum_probs=79.3
Q ss_pred cCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccc
Q psy9363 320 IFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398 (421)
Q Consensus 320 ~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 398 (421)
.+ .+++.|.||+|+++ .++.-+..+.+ +.|++.+|+|+++|.++..++.|+.|+++-|++... +..|+.+|.|
T Consensus 31 ~~--s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l--prgfgs~p~l 104 (264)
T KOG0617|consen 31 NM--SNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL--PRGFGSFPAL 104 (264)
T ss_pred ch--hhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC--ccccCCCchh
Confidence 56 88999999999998 22233445567 999999999999999999999999999999999553 5689999999
Q ss_pred cccccccccCcccCCCCCCC
Q psy9363 399 KYLNLASTNLRNIKLNKEGH 418 (421)
Q Consensus 399 ~~L~Ls~N~l~~i~~p~~~~ 418 (421)
+.|||++|++.+-.+|....
T Consensus 105 evldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred hhhhccccccccccCCcchh
Confidence 99999999999988886543
No 33
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=98.62 E-value=6.7e-08 Score=93.02 Aligned_cols=64 Identities=38% Similarity=0.734 Sum_probs=59.7
Q ss_pred CCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecC
Q psy9363 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD 249 (421)
Q Consensus 183 ~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~ 249 (421)
+.++++|. ++..+|++||+|......|.|+|+|.|++. |+++|+++|+|||.|. ...|.|+++.
T Consensus 4 lSv~D~Vl-l~~~~g~VrfiG~t~f~~GiW~GlELd~p~-GkNDGSvnGvRYF~Ck-k~~giFir~~ 67 (669)
T COG5244 4 LSVNDRVL-LGDKFGTVRFIGKTKFKDGIWIGLELDDPV-GKNDGSVNGVRYFHCK-KRHGIFIRPD 67 (669)
T ss_pred eecCCEEE-eccccceEEEeeecccccceEEEEEecCCC-CCCCCccCceEEEEec-CCcceEEecC
Confidence 56888988 889999999999999999999999999998 9999999999999997 7899999975
No 34
>KOG2739|consensus
Probab=98.49 E-value=3.8e-08 Score=89.33 Aligned_cols=133 Identities=21% Similarity=0.226 Sum_probs=105.1
Q ss_pred CCccCcCCCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-c--ccCCCCCCcccccccccchhccc
Q psy9363 2 DSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-I--RLKSSSAPAHSYLAEVVFFVHLG 78 (421)
Q Consensus 2 ~~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N--~l~~~~~p~~~~~~~~L~~L~L~ 78 (421)
++.++.+| ....+...+.+|+.|++.+-.+++.-..|. ||+|++|.++ | +.+ +.++.....+++|++|+|+
T Consensus 26 D~~~s~~g-~~~gl~d~~~~le~ls~~n~gltt~~~~P~----Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 26 DNARSGAG-KLGGLTDEFVELELLSVINVGLTTLTNFPK----LPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLS 99 (260)
T ss_pred chhhhcCC-CcccccccccchhhhhhhccceeecccCCC----cchhhhhcccCCccccc-ccceehhhhCCceeEEeec
Confidence 45566666 556667778899999999999998777776 8999999995 8 555 4555555677999999999
Q ss_pred cccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhcc
Q psy9363 79 RTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGS 145 (421)
Q Consensus 79 ~~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~a 145 (421)
.|.+.. +..+.. +..+++|..|++..|+.+. ...||..++..+++|++||+..+...|...+
T Consensus 100 ~Nki~~-lstl~p-l~~l~nL~~Ldl~n~~~~~---l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 100 GNKIKD-LSTLRP-LKELENLKSLDLFNCSVTN---LDDYREKVFLLLPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred CCcccc-ccccch-hhhhcchhhhhcccCCccc---cccHHHHHHHHhhhhccccccccCCcccccc
Confidence 887743 444444 7889999999999999876 3789999999999999999998776665433
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.2e-07 Score=66.71 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=50.8
Q ss_pred CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCC
Q psy9363 324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNI 383 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l 383 (421)
++|+.|++++|.|+ .+. ..+..+++ ++|++++|.|+.+++.. ..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~--~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP--DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT--TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH--HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57999999999998 432 56788899 99999999999988755 8999999999999986
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=3.2e-07 Score=96.71 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=74.5
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L 99 (421)
.++.|+|++|.++ +.+|..+++|++|+.|+| +|.+. +.+|..++.+++|+.|+|++|.+++.++.. +..+++|
T Consensus 419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~---l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPES---LGQLTSL 492 (623)
T ss_pred EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchH---HhcCCCC
Confidence 4889999999998 778888999999999999 58888 688888889999999999998888876654 7789999
Q ss_pred ceeeecCCCCCC
Q psy9363 100 SSLRFTKNPILA 111 (421)
Q Consensus 100 ~~L~l~~N~l~~ 111 (421)
++|+|++|.+..
T Consensus 493 ~~L~Ls~N~l~g 504 (623)
T PLN03150 493 RILNLNGNSLSG 504 (623)
T ss_pred CEEECcCCcccc
Confidence 999999999844
No 37
>KOG2982|consensus
Probab=98.35 E-value=3.2e-07 Score=84.67 Aligned_cols=108 Identities=24% Similarity=0.448 Sum_probs=84.6
Q ss_pred CccCCCC-CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcc-cCCCCCCCCCCcEEECcC
Q psy9363 305 NKLPIPN-DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITT-LDSVPGMFSSLEELYLQE 380 (421)
Q Consensus 305 ~~l~l~~-~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~~~l~~L~~L~Ls~ 380 (421)
....|++ ++....-... +.+++|||..|.|+ |.+|..++.++|. +.|+|+.|.+.. |...-....+|++|-|.+
T Consensus 53 n~~~id~~gd~~~~~~~~--~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 53 NGSIIDNEGDVMLFGSSV--TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred cCCCCCcchhHHHHHHHh--hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 3344443 4444555677 89999999999999 9999999999999 999999999973 322113557999999999
Q ss_pred CCCCCCCccc-ccCccccccccccccccCcccCCCC
Q psy9363 381 NNIVDWGEVN-ALGSLPNLKYLNLASTNLRNIKLNK 415 (421)
Q Consensus 381 N~l~~~~~~~-~l~~l~~L~~L~Ls~N~l~~i~~p~ 415 (421)
..+ +|.... .+..+|.+++|++|.|.+..+.+-+
T Consensus 131 T~L-~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd 165 (418)
T KOG2982|consen 131 TGL-SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDD 165 (418)
T ss_pred CCC-Chhhhhhhhhcchhhhhhhhccchhhhhcccc
Confidence 999 887555 4677999999999999877655543
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=5.5e-07 Score=94.96 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=47.7
Q ss_pred CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcc
Q psy9363 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEV 389 (421)
Q Consensus 312 ~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 389 (421)
+.+|..+..+ ++|+.|+|++|.++ +.++..+..++. +.|+|++|+++ .+|..+..+++|+.|+|++|++ .+..+
T Consensus 432 g~ip~~i~~L--~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l-~g~iP 507 (623)
T PLN03150 432 GFIPNDISKL--RHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGRVP 507 (623)
T ss_pred ccCCHHHhCC--CCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc-cccCC
Confidence 4455555555 55666666666555 334444555555 55666666555 3444445555566666666655 33333
Q ss_pred cccCc-ccccccccccccc
Q psy9363 390 NALGS-LPNLKYLNLASTN 407 (421)
Q Consensus 390 ~~l~~-l~~L~~L~Ls~N~ 407 (421)
..++. +.++..+++.+|.
T Consensus 508 ~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 508 AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred hHHhhccccCceEEecCCc
Confidence 34433 2344455555554
No 39
>KOG1259|consensus
Probab=98.31 E-value=1.4e-07 Score=87.02 Aligned_cols=103 Identities=24% Similarity=0.288 Sum_probs=62.8
Q ss_pred CCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCC--------------
Q psy9363 304 TNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDS-------------- 365 (421)
Q Consensus 304 L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-------------- 365 (421)
|+.+++++ ..+....+-. |.++.|++|+|.|. .+ ..+..+++ +.|+||+|.++.+..
T Consensus 286 LtelDLS~N~I~~iDESvKL~--Pkir~L~lS~N~i~--~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLA--PKLRRLILSQNRIR--TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhccccccchhhhhhhhhhc--cceeEEecccccee--ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34444444 3334444455 66666666666665 11 11344555 666666666654332
Q ss_pred --------CCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363 366 --------VPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 366 --------~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i 411 (421)
.+..+-+|..||+++|+|+..+++..++++|-|+++.|.+|+++.+
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 1245556777888888887777777788888888888888888754
No 40
>KOG0971|consensus
Probab=98.22 E-value=2.3e-06 Score=88.36 Aligned_cols=69 Identities=33% Similarity=0.616 Sum_probs=61.7
Q ss_pred ccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcc
Q psy9363 181 MEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251 (421)
Q Consensus 181 ~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l 251 (421)
+.+.+|.||...+. -.|++.|+|...++.|.|+||-+|++. ||++|++.|.+||.|. +++|-||+.+.+
T Consensus 4 r~lkvG~RVevtgknl~G~VayvG~T~FA~G~WvGVvLDep~-GKNnGsVqg~qYF~Cd-~ncG~FVr~sq~ 73 (1243)
T KOG0971|consen 4 RSLKVGTRVEVTGKNLQGTVAYVGQTQFAEGKWVGVVLDEPK-GKNNGSVQGVQYFECD-ENCGVFVRSSQV 73 (1243)
T ss_pred ccccccceEEeccCCccceEEEecccccccCceEEEEecccc-CCCCCcccceeeEecC-CCcceEeehhhh
Confidence 44789999993333 679999999999999999999999988 9999999999999996 899999999864
No 41
>KOG1259|consensus
Probab=98.20 E-value=3.2e-07 Score=84.75 Aligned_cols=79 Identities=25% Similarity=0.245 Sum_probs=54.3
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCC--CCCCCCCCcE
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDS--VPGMFSSLEE 375 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~--~~~~l~~L~~ 375 (421)
+|+.+++++ ..+..+-.++ .+++.|.|+.|.|. ... +..+=+ ..|++++|+|..+.. .++.+|.|+.
T Consensus 330 ~L~~LDLS~N~Ls~~~Gwh~KL--GNIKtL~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAECVGWHLKL--GNIKTLKLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET 403 (490)
T ss_pred cceEeecccchhHhhhhhHhhh--cCEeeeehhhhhHhhhhh----hHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence 666666665 3334445566 77777777777775 211 222334 789999999987653 3589999999
Q ss_pred EECcCCCCCCCC
Q psy9363 376 LYLQENNIVDWG 387 (421)
Q Consensus 376 L~Ls~N~l~~~~ 387 (421)
+.|-+|.|....
T Consensus 404 l~L~~NPl~~~v 415 (490)
T KOG1259|consen 404 LRLTGNPLAGSV 415 (490)
T ss_pred HhhcCCCccccc
Confidence 999999996543
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=4.7e-06 Score=83.18 Aligned_cols=64 Identities=25% Similarity=0.366 Sum_probs=41.0
Q ss_pred hhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCC
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVD 385 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~ 385 (421)
.+..+ +++..+.+.+|++. .++.....++. +.|++++|.++.++. +..+.+++.|++++|.+..
T Consensus 227 ~~~~~--~~l~~l~l~~n~~~--~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 227 SLSNL--KNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhhhc--ccccccccCCceee--eccchhccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 34455 66666667777765 11244555666 777777777777665 6666777777777777744
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=5.1e-06 Score=55.17 Aligned_cols=38 Identities=45% Similarity=0.655 Sum_probs=21.2
Q ss_pred CCcEEECcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 372 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i 411 (421)
+|++|++++|+|++++ ..++.|++|++|++++|+|+++
T Consensus 2 ~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCCC
Confidence 5666666666665532 1356666666666666666654
No 44
>KOG1644|consensus
Probab=97.95 E-value=5.8e-06 Score=72.47 Aligned_cols=83 Identities=28% Similarity=0.468 Sum_probs=68.9
Q ss_pred CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363 324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 400 (421)
.+...+||++|.+. . ..+..++. .+|.|++|+|+.|.+.+ ..+++|+.|.|.+|.|..+.++..+..+|.|+.
T Consensus 42 d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhc----ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 67788899999987 3 33556677 89999999999888766 667889999999999988888888888999999
Q ss_pred cccccccCcc
Q psy9363 401 LNLASTNLRN 410 (421)
Q Consensus 401 L~Ls~N~l~~ 410 (421)
|.+-+|++++
T Consensus 118 Ltll~Npv~~ 127 (233)
T KOG1644|consen 118 LTLLGNPVEH 127 (233)
T ss_pred eeecCCchhc
Confidence 9999998875
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=5.8e-06 Score=54.90 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=29.0
Q ss_pred cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCC
Q psy9363 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWG 387 (421)
Q Consensus 351 ~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 387 (421)
++|++++|+|+.+|+.+..+++|+.|++++|+|++++
T Consensus 4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 4 EELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred eEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 7788888888888765788888888888888887644
No 46
>KOG4579|consensus
Probab=97.76 E-value=3.4e-06 Score=69.50 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=67.6
Q ss_pred CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363 324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 401 (421)
..|+..+|++|.|. ++. .+...+|. +.|+|++|.|+++|..+..++.|+.|+++.|.+... +..+..+.+|..|
T Consensus 53 ~el~~i~ls~N~fk~fp~--kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPK--KFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhhhCCH--HHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHhHHHh
Confidence 56777899999998 433 55666777 889999999999988888889999999999998553 3445568888888
Q ss_pred ccccccCcccCC
Q psy9363 402 NLASTNLRNIKL 413 (421)
Q Consensus 402 ~Ls~N~l~~i~~ 413 (421)
+..+|.+..|+.
T Consensus 129 ds~~na~~eid~ 140 (177)
T KOG4579|consen 129 DSPENARAEIDV 140 (177)
T ss_pred cCCCCccccCcH
Confidence 888888877654
No 47
>KOG4579|consensus
Probab=97.72 E-value=3.9e-06 Score=69.12 Aligned_cols=130 Identities=21% Similarity=0.179 Sum_probs=93.3
Q ss_pred ccCcCCCChhHHhhhCCC---CcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhcccc
Q psy9363 4 RVSNAGKTHDEIEQAVPF---IEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGR 79 (421)
Q Consensus 4 ~i~~~g~~~~~~~~~~~~---L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~ 79 (421)
.|-++|.-..+..+.|.. +-.+|||...|-.+...+.-+.....|+..+| +|.|.. ..+.+...|+.++.|+|++
T Consensus 8 iV~~agrgV~evVercedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~ 86 (177)
T KOG4579|consen 8 IVARAGRGVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLAN 86 (177)
T ss_pred HHHHHhhhHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcch
Confidence 445666656666666654 67789999988655555555666677888899 588883 4445566778999999999
Q ss_pred ccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHH
Q psy9363 80 TLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYI 150 (421)
Q Consensus 80 ~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l 150 (421)
|.++.-+.+ ++.+|.|+.|+++.||+. ..+.+|+.+.++.+||.-. .+.+|+.|-
T Consensus 87 neisdvPeE----~Aam~aLr~lNl~~N~l~-------~~p~vi~~L~~l~~Lds~~-----na~~eid~d 141 (177)
T KOG4579|consen 87 NEISDVPEE----LAAMPALRSLNLRFNPLN-------AEPRVIAPLIKLDMLDSPE-----NARAEIDVD 141 (177)
T ss_pred hhhhhchHH----HhhhHHhhhcccccCccc-------cchHHHHHHHhHHHhcCCC-----CccccCcHH
Confidence 988544443 677999999999999983 3467888888888888753 333555555
No 48
>KOG1909|consensus
Probab=97.68 E-value=2.5e-05 Score=73.86 Aligned_cols=126 Identities=20% Similarity=0.151 Sum_probs=91.2
Q ss_pred hHHhhhCCCCcEEECCCCCCCChhh--HHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-
Q psy9363 13 DEIEQAVPFIEDLDLSRNLLASWFA--VGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED- 85 (421)
Q Consensus 13 ~~~~~~~~~L~~L~Ls~N~ls~~~~--i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~- 85 (421)
.++.+.++.|+++-+++|.|..-+. +...+.++|+|++||| +|-|+.- .+......++.|++|+++.|.+...
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 4667888999999999999986433 4567888999999999 6988731 1111223457899999999887533
Q ss_pred -hhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChh
Q psy9363 86 -FVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQ 140 (421)
Q Consensus 86 -~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~ 140 (421)
..-...+-...|+|+.|.|.+|.++... .......++..|.|+.||++.....
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da--~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDA--ALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHH--HHHHHHHHhcchhhHHhcCCccccc
Confidence 4444455667899999999999985432 2233456777899999999866553
No 49
>KOG0531|consensus
Probab=97.59 E-value=2.6e-05 Score=78.49 Aligned_cols=88 Identities=30% Similarity=0.341 Sum_probs=55.3
Q ss_pred hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccc
Q psy9363 318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLP 396 (421)
Q Consensus 318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 396 (421)
...+ ++|+.|++.+|.|. .+......+++ +.|+|++|+|+.+.. +..+..|+.|++++|.|+.++ .+..++
T Consensus 91 l~~~--~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~---~~~~l~ 162 (414)
T KOG0531|consen 91 LSKL--KSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS---GLESLK 162 (414)
T ss_pred cccc--cceeeeeccccchh--hcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc---CCccch
Confidence 4555 67777777777776 12222445566 777777777776653 455666777777777776643 455566
Q ss_pred cccccccccccCcccCC
Q psy9363 397 NLKYLNLASTNLRNIKL 413 (421)
Q Consensus 397 ~L~~L~Ls~N~l~~i~~ 413 (421)
.|+.+++++|+++.+..
T Consensus 163 ~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hhhcccCCcchhhhhhh
Confidence 77777777777766543
No 50
>KOG1859|consensus
Probab=97.55 E-value=1.5e-05 Score=81.78 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=49.7
Q ss_pred hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363 16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH 94 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~ 94 (421)
.+.+++|+.||||+|.+.+.+ .+..++.|+.|||+ |.+.. +|...-.-.+|+.|.|.||-. -.+.. +.
T Consensus 183 Lqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l-~tL~g----ie 251 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNAL-TTLRG----IE 251 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhcc--ccccchhhhhheeeeecccHH-Hhhhh----HH
Confidence 456788999999999998644 45669999999995 98874 333211112366666655533 11222 22
Q ss_pred hCCCCceeeecCCCC
Q psy9363 95 YLPKLSSLRFTKNPI 109 (421)
Q Consensus 95 ~l~~L~~L~l~~N~l 109 (421)
+|.+|+.||++.|-|
T Consensus 252 ~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLL 266 (1096)
T ss_pred hhhhhhccchhHhhh
Confidence 344444455555544
No 51
>KOG1859|consensus
Probab=97.53 E-value=1.2e-05 Score=82.50 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=25.5
Q ss_pred hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363 88 KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE 138 (421)
Q Consensus 88 ~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~ 138 (421)
++..++.-+++++.|.+-.-|- . +...+..|..+.+|++|.+..+.
T Consensus 75 qLq~i~d~lqkt~~lkl~~~pa-~----~pt~pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 75 QLQRILDFLQKTKVLKLLPSPA-R----DPTEPISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred HHHHHHHHHhhheeeeecccCC-C----CCCCCceeccccceeeEEecCcc
Confidence 3333455667777777666552 1 11125566677777777665443
No 52
>KOG1909|consensus
Probab=97.52 E-value=0.00019 Score=68.00 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=88.0
Q ss_pred hhhCCCCcEEECCCCCCCC--hhhHHHHHhcCCCCceeec-ccccCCC---C---------CCcccccccccchhccccc
Q psy9363 16 EQAVPFIEDLDLSRNLLAS--WFAVGEITCQLKHLRHLNL-RIRLKSS---S---------APAHSYLAEVVFFVHLGRT 80 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~--~~~i~~~~~~l~~L~~L~L-~N~l~~~---~---------~p~~~~~~~~L~~L~L~~~ 80 (421)
...||+|++||||+|-|.. ...+...+++...|+.|.| +|.+... . .....+.-++|++++.++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4468899999999999984 3455667888999999999 4666521 1 1112234468999999888
Q ss_pred cCC-cchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363 81 LCD-EDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER 139 (421)
Q Consensus 81 ~~~-~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~ 139 (421)
.+- +....+...+...|.|+.++++.|.|.... -......+.++++|++||+...+.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG--~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG--VTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCch--hHHHHHHHHhCCcceeeecccchh
Confidence 763 223334444788899999999999986553 245567899999999999975543
No 53
>KOG4568|consensus
Probab=97.51 E-value=8.6e-05 Score=77.24 Aligned_cols=65 Identities=34% Similarity=0.616 Sum_probs=54.6
Q ss_pred CCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecC
Q psy9363 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD 249 (421)
Q Consensus 183 ~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~ 249 (421)
+.+|.++.-.....|.++|.|++....|.|.||+.++.. |+++|++.|++||.|. +..|.|.+..
T Consensus 18 ~~ig~~v~v~~~~~G~v~y~G~t~f~~G~w~GveL~~p~-GKNdGsv~G~rYF~ce-~~kgif~~~~ 82 (664)
T KOG4568|consen 18 FIIGRRVWVNNVELGFVRYAGETDFAKGIWAGVELLEPK-GKNDGSVHGKRYFQCE-PKKGIFFRQG 82 (664)
T ss_pred hhhcceEEecCCcceeeeeccCcccccceeeceeecccc-CCCCcccchhhhhccc-cccceeeccc
Confidence 568888873345999999999999999999999999988 9999999999999998 4444455544
No 54
>KOG3665|consensus
Probab=97.42 E-value=0.00027 Score=75.01 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred ChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhH
Q psy9363 11 THDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKE 89 (421)
Q Consensus 11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~ 89 (421)
-|.+++..+|+|++|.+++=.+.. ++....+.++|+|.+||+| -+++. + ..++.+.+|++|.+.|--+ .+..++
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~-e~~~~l 213 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEF-ESYQDL 213 (699)
T ss_pred HHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCC-CchhhH
Confidence 466788888888888888877655 4567777788888888884 45552 1 4456777888888855322 122334
Q ss_pred HHHHhhCCCCceeeecCCCCCCccccchhHHH--HHHhccCceeccCC
Q psy9363 90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREK--TIARLGGLKLLNGS 135 (421)
Q Consensus 90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~i~~l~~L~~ln~s 135 (421)
.. +..|.+|+.||+|........ .-.+++ .-.-+|.|+.||-|
T Consensus 214 ~~-LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 214 ID-LFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HH-HhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecC
Confidence 34 677889999999888765443 111222 12237888888887
No 55
>KOG2123|consensus
Probab=97.41 E-value=9.7e-06 Score=74.39 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=73.1
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 402 (421)
.+.+.|++-++.|+ +| .++..||. +.|.||-|+|+.+.+ +..|.+|++|+|..|.|.++.++..+.++|+|++|.
T Consensus 19 ~~vkKLNcwg~~L~--DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD--DI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCcc--HH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 67788888888888 22 57788999 999999999999864 788999999999999999999888999999999999
Q ss_pred cccccCcc
Q psy9363 403 LASTNLRN 410 (421)
Q Consensus 403 Ls~N~l~~ 410 (421)
|..|+=.+
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 99998765
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.30 E-value=8.8e-05 Score=74.05 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=56.5
Q ss_pred CCCchhhhcCCCC-CccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcc
Q psy9363 312 DTSGVMEQIFPQG-HIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV 389 (421)
Q Consensus 312 ~~~~~~~~~l~~~-~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 389 (421)
..++.....+ + +|+.|++++|.+. .++.....++. +.|++++|+++.++......+.|+.|++++|+++.++.
T Consensus 129 ~~i~~~~~~~--~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~- 203 (394)
T COG4886 129 TDIPPLIGLL--KSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP- 203 (394)
T ss_pred ccCccccccc--hhhcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch-
Confidence 3444444454 4 6777777777776 22234566666 77777777777776544467777777777777766542
Q ss_pred cccCcccccccccccccc
Q psy9363 390 NALGSLPNLKYLNLASTN 407 (421)
Q Consensus 390 ~~l~~l~~L~~L~Ls~N~ 407 (421)
.++....|++|.+++|+
T Consensus 204 -~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 204 -EIELLSALEELDLSNNS 220 (394)
T ss_pred -hhhhhhhhhhhhhcCCc
Confidence 22344457777777774
No 57
>KOG0531|consensus
Probab=97.01 E-value=0.00021 Score=71.86 Aligned_cols=87 Identities=25% Similarity=0.331 Sum_probs=71.8
Q ss_pred hcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccc
Q psy9363 319 QIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPN 397 (421)
Q Consensus 319 ~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 397 (421)
..+ ..+..+.+..|.+. .+......+.+ +.|++.+|+|..+...+..+++|++|+|++|.|+++. .+..++.
T Consensus 69 ~~l--~~l~~l~l~~n~i~--~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~---~l~~l~~ 141 (414)
T KOG0531|consen 69 ESL--TSLKELNLRQNLIA--KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE---GLSTLTL 141 (414)
T ss_pred HHh--HhHHhhccchhhhh--hhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc---chhhccc
Confidence 456 77788889999987 22344666778 9999999999998764688999999999999998844 6778888
Q ss_pred ccccccccccCcccC
Q psy9363 398 LKYLNLASTNLRNIK 412 (421)
Q Consensus 398 L~~L~Ls~N~l~~i~ 412 (421)
|+.|++++|.|+.+.
T Consensus 142 L~~L~l~~N~i~~~~ 156 (414)
T KOG0531|consen 142 LKELNLSGNLISDIS 156 (414)
T ss_pred hhhheeccCcchhcc
Confidence 999999999998753
No 58
>KOG2120|consensus
Probab=96.99 E-value=0.00043 Score=64.43 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=41.2
Q ss_pred HhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc--cccCCCCCCcccccccccchhccccccC
Q psy9363 15 IEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR--IRLKSSSAPAHSYLAEVVFFVHLGRTLC 82 (421)
Q Consensus 15 ~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~--N~l~~~~~p~~~~~~~~L~~L~L~~~~~ 82 (421)
|...|.+|+.|.|.++++. +.|...++.=.+|+.|+|+ +.|+..........|+.|..|+|+.|..
T Consensus 205 iLs~C~kLk~lSlEg~~Ld--D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLD--DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHHhhhhccccccccC--cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 4456777777777777777 4566666666777777773 6665333333344666777777766643
No 59
>KOG2739|consensus
Probab=96.97 E-value=0.00039 Score=63.53 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=50.8
Q ss_pred CCccEEEeeCc--ccchhhHHHHhccCCC-cEEEccCCcCcccCC--CCCCCCCCcEEECcCCCCCCCCccc--ccCccc
Q psy9363 324 GHIHTLTLGNM--GYIWADILKLLANFPV-TCLKLPSNRITTLDS--VPGMFSSLEELYLQENNIVDWGEVN--ALGSLP 396 (421)
Q Consensus 324 ~~L~~L~Ls~N--~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~--~~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~l~ 396 (421)
++|+.|.+|.| ++. ....-.....|+ ++|+|++|+|..+.. +...+.+|..|++.+|......... .+..+|
T Consensus 65 p~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred chhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 78888888888 444 222333444588 888888888874332 2367778888888888765543221 244567
Q ss_pred cccccccc
Q psy9363 397 NLKYLNLA 404 (421)
Q Consensus 397 ~L~~L~Ls 404 (421)
+|+.||-.
T Consensus 144 ~L~~LD~~ 151 (260)
T KOG2739|consen 144 SLKYLDGC 151 (260)
T ss_pred hhcccccc
Confidence 77766543
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.96 E-value=0.0022 Score=59.14 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=59.0
Q ss_pred hcCCCCCccEEEeeCcccc-hh-h-HHHHhccCCC-cEEEccCCcCcc--cCCC---C--CCCCCCcEEECcCCCCCCCC
Q psy9363 319 QIFPQGHIHTLTLGNMGYI-WA-D-ILKLLANFPV-TCLKLPSNRITT--LDSV---P--GMFSSLEELYLQENNIVDWG 387 (421)
Q Consensus 319 ~~l~~~~L~~L~Ls~N~l~-~~-~-i~~~~~~l~~-~~L~L~~N~l~~--l~~~---~--~~l~~L~~L~Ls~N~l~~~~ 387 (421)
..+ ++|..|||..|-|+ .+ . .......|+. ++|.+..+-++. .... + ...++|..|-..+|.....
T Consensus 211 ~y~--~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~- 287 (388)
T COG5238 211 FYS--HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG- 287 (388)
T ss_pred HHh--CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc-
Confidence 355 78888899888888 22 1 2234456777 888888888763 1110 1 4567888888888887433
Q ss_pred cccc-------cCccccccccccccccCcc
Q psy9363 388 EVNA-------LGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 388 ~~~~-------l~~l~~L~~L~Ls~N~l~~ 410 (421)
.+.. -..+|-|..|-+.+|+|+.
T Consensus 288 ~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 288 IILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred eeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 2322 1357888888889998875
No 61
>KOG0532|consensus
Probab=96.95 E-value=9.4e-05 Score=74.18 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=49.1
Q ss_pred CchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCCcEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCC-----
Q psy9363 314 SGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWG----- 387 (421)
Q Consensus 314 ~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~----- 387 (421)
+|..+..+ ..|++|+|+.|.++ .+ .-+..+|-+.|-+++|+++.+|.+++...+|..||.+.|.+.+.+
T Consensus 113 ip~~i~~L--~~lt~l~ls~NqlS~lp---~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 113 IPEAICNL--EALTFLDLSSNQLSHLP---DGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred cchhhhhh--hHHHHhhhccchhhcCC---hhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhh
Confidence 44445555 55555555555555 21 112222335555555555555555555555555555555554432
Q ss_pred ----------------cccccCccccccccccccccCcccCC
Q psy9363 388 ----------------EVNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 388 ----------------~~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
.+..+..| .|..||+|.|+++.||+
T Consensus 188 l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch
Confidence 01233333 46777888888876654
No 62
>KOG3763|consensus
Probab=96.93 E-value=0.00091 Score=67.11 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=65.6
Q ss_pred hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363 16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY 95 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~ 95 (421)
.+..+.+..++|++|++-+++.+..+...-|+|+.|+|+|+.+.... .+.+++. +
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--------------------~~el~K~-----k 268 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--------------------ESELDKL-----K 268 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--------------------hhhhhhh-----c
Confidence 34456677777777777777777666666666666666432110000 1122322 5
Q ss_pred CCCCceeeecCCCCCCccc-cchhHHHHHHhccCceeccCCccChh
Q psy9363 96 LPKLSSLRFTKNPILAEER-VVSSREKTIARLGGLKLLNGSAIERQ 140 (421)
Q Consensus 96 l~~L~~L~l~~N~l~~~~~-~~~~~~~~i~~l~~L~~ln~s~i~~~ 140 (421)
...|+.|-|.|||++.... ...|...+...+|+|..||+-.+.++
T Consensus 269 ~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~~~ 314 (585)
T KOG3763|consen 269 GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQPE 314 (585)
T ss_pred CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCcccCcc
Confidence 6788999999999988754 23455577889999999999877663
No 63
>KOG0532|consensus
Probab=96.63 E-value=0.00038 Score=69.96 Aligned_cols=92 Identities=22% Similarity=0.300 Sum_probs=66.9
Q ss_pred CChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhh
Q psy9363 10 KTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVK 88 (421)
Q Consensus 10 ~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~ 88 (421)
..|.+|+ ..++|..||.|.|.|. .++..++.+.+|+.|++ +|++. .+|...+ .=.|..||+++|.++--+..
T Consensus 157 ~lp~~ig-~~~tl~~ld~s~nei~---slpsql~~l~slr~l~vrRn~l~--~lp~El~-~LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 157 SLPEEIG-LLPTLAHLDVSKNEIQ---SLPSQLGYLTSLRDLNVRRNHLE--DLPEELC-SLPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred cCCcccc-cchhHHHhhhhhhhhh---hchHHhhhHHHHHHHHHhhhhhh--hCCHHHh-CCceeeeecccCceeecchh
Confidence 3466677 6788888888888886 45777788888888888 58887 4666655 45677888877765333333
Q ss_pred HHHHHhhCCCCceeeecCCCCCCc
Q psy9363 89 EGSLLHYLPKLSSLRFTKNPILAE 112 (421)
Q Consensus 89 ~~~ll~~l~~L~~L~l~~N~l~~~ 112 (421)
+.+|..|++|-|..||+...
T Consensus 230 ----fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 230 ----FRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred ----hhhhhhheeeeeccCCCCCC
Confidence 56788899999999998543
No 64
>KOG4658|consensus
Probab=96.59 E-value=0.0017 Score=70.80 Aligned_cols=82 Identities=26% Similarity=0.280 Sum_probs=44.4
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccC--CCCCCCCCCcEEECcCCCCCCCCc--ccccCccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLD--SVPGMFSSLEELYLQENNIVDWGE--VNALGSLPNL 398 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~--~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~l~~L 398 (421)
++|+.|.+..+..- ..+......+.. ..+-+..+.+..++ ...+.++++..+.+++=.+..|.. .+.++.+|.+
T Consensus 770 ~~L~~l~l~~~~~~-e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLL-EDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred CcccEEEEeccccc-ccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccc
Confidence 78888888776654 222222223333 44555566665442 223566666666665555555431 1234567777
Q ss_pred cccccccc
Q psy9363 399 KYLNLAST 406 (421)
Q Consensus 399 ~~L~Ls~N 406 (421)
.++...++
T Consensus 849 ~~~~i~~~ 856 (889)
T KOG4658|consen 849 STLTIVGC 856 (889)
T ss_pred cccceecc
Confidence 77777765
No 65
>KOG3556|consensus
Probab=96.51 E-value=0.007 Score=59.88 Aligned_cols=66 Identities=30% Similarity=0.541 Sum_probs=53.0
Q ss_pred CCCCceEEeec------CceeEEEEecccCCCCCcEEEEEecCCC----CCCCCCeeCCEEeEecCCCCceeEEecCc
Q psy9363 183 DDIGLRVCDSE------GHRGTIRYVGSVEGTQGVWYGIDWDSET----RGKHDGSHNGVKYFWTHSTTSGSFMRRDK 250 (421)
Q Consensus 183 ~~i~~rv~~l~------~~~~~~r~~G~ip~~~g~~~gle~d~~~----~g~~~G~~~g~~~f~~~~~~~gsf~~~~~ 250 (421)
+.+|+.+. +. .-.|.+||+|.-|+..+.|+|+|+++.+ .+..+|+..|.|+|+|. .+-+.|+...+
T Consensus 236 L~IGslve-V~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~-d~~a~Fv~~~s 311 (724)
T KOG3556|consen 236 LKIGSLVE-VENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCF-DTNANFVMSGS 311 (724)
T ss_pred ceecceEE-ecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeec-cccceeeEcCC
Confidence 45666655 43 3589999999999999999999999866 57789999999999997 55666666554
No 66
>KOG3665|consensus
Probab=96.39 E-value=0.0021 Score=68.39 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=39.7
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 402 (421)
|+|+.|.+++=.+.-.+....+..||+ ..||+|+-.++.+. .++.+++|++|.+.+=.+++..+...+-+|++|+.||
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 666666666655542334455666666 66666666665442 2334444444444443333333333333444444444
Q ss_pred ccc
Q psy9363 403 LAS 405 (421)
Q Consensus 403 Ls~ 405 (421)
+|.
T Consensus 227 IS~ 229 (699)
T KOG3665|consen 227 ISR 229 (699)
T ss_pred ccc
Confidence 443
No 67
>KOG2120|consensus
Probab=96.36 E-value=0.00061 Score=63.43 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=59.5
Q ss_pred hHHhhhCCCCcEEECC-CCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCccc-ccccccchhccccc---cCCcch
Q psy9363 13 DEIEQAVPFIEDLDLS-RNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHS-YLAEVVFFVHLGRT---LCDEDF 86 (421)
Q Consensus 13 ~~~~~~~~~L~~L~Ls-~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~-~~~~~L~~L~L~~~---~~~~~~ 86 (421)
.+|++. .+|+.|||| .|.|+. .++.-+++++++|..|+|+ ..+....+-..+ -.-++|+.|+|+.+ +...
T Consensus 228 ~~iAkN-~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-- 303 (419)
T KOG2120|consen 228 NTIAKN-SNLVRLNLSMCSGFTE-NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-- 303 (419)
T ss_pred HHHhcc-ccceeeccccccccch-hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--
Confidence 345543 578888887 445775 3556667777778777775 433311111000 01245666666532 2222
Q ss_pred hhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 87 VKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 87 ~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
.+.-+.+++|+|.+|||++|--... -...++-+++.|++|.++
T Consensus 304 -h~~tL~~rcp~l~~LDLSD~v~l~~-----~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 304 -HLSTLVRRCPNLVHLDLSDSVMLKN-----DCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred -HHHHHHHhCCceeeeccccccccCc-----hHHHHHHhcchheeeehh
Confidence 2222355677777777776653221 123445566666666554
No 68
>KOG4658|consensus
Probab=95.76 E-value=0.0068 Score=66.27 Aligned_cols=88 Identities=25% Similarity=0.258 Sum_probs=41.5
Q ss_pred HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHH
Q psy9363 14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSL 92 (421)
Q Consensus 14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~l 92 (421)
++...+|.|+.||||+|.= ...+|..++.|-+|+.|+| ...++ .+|..++++..|.+|++..+..-..++.+
T Consensus 565 ~ff~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i--- 637 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI--- 637 (889)
T ss_pred HHHhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch---
Confidence 3344455555555555431 1244555555555555555 24444 34555555555555555433211111222
Q ss_pred HhhCCCCceeeecCCC
Q psy9363 93 LHYLPKLSSLRFTKNP 108 (421)
Q Consensus 93 l~~l~~L~~L~l~~N~ 108 (421)
...+++|++|.+..-.
T Consensus 638 ~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccEEEeeccc
Confidence 3345666666555443
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.67 E-value=0.049 Score=50.47 Aligned_cols=121 Identities=20% Similarity=0.152 Sum_probs=80.3
Q ss_pred hCCCCcEEECCCCCCCC--hhhHHHHHhcCCCCceeecc-cccCC---CCCC---------cccccccccchhccccccC
Q psy9363 18 AVPFIEDLDLSRNLLAS--WFAVGEITCQLKHLRHLNLR-IRLKS---SSAP---------AHSYLAEVVFFVHLGRTLC 82 (421)
Q Consensus 18 ~~~~L~~L~Ls~N~ls~--~~~i~~~~~~l~~L~~L~L~-N~l~~---~~~p---------~~~~~~~~L~~L~L~~~~~ 82 (421)
.||+|+..|||+|.|+. .+.+...+++-+.|+.|.|+ |.+.. +.+. .-...-+.|++..-+.|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 59999999999999885 34566778888999999995 65552 1111 0112345677777766644
Q ss_pred -CcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363 83 -DEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER 139 (421)
Q Consensus 83 -~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~ 139 (421)
+|+-.....++..-.+|+.+.+..|-|-... ........+.++.+|++||+...+.
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpeg-v~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEG-VTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcch-hHHHHHHHHHHhCcceeeeccccch
Confidence 3443223333555679999999999874321 1222335678889999999986654
No 70
>KOG3763|consensus
Probab=93.89 E-value=0.029 Score=56.63 Aligned_cols=59 Identities=27% Similarity=0.236 Sum_probs=30.3
Q ss_pred CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCC--cCcccCCCC--CCCCCCcEEECcCCCC
Q psy9363 324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSN--RITTLDSVP--GMFSSLEELYLQENNI 383 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N--~l~~l~~~~--~~l~~L~~L~Ls~N~l 383 (421)
+.+..++|++|++. ...+..+....|+ ..|+|++| .+..-+ ++ .....|++|.|.+|.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcc
Confidence 55556666666665 4455555555555 66666666 332211 11 2233455566666665
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.73 E-value=0.025 Score=29.13 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=5.4
Q ss_pred cccccccccccCcc
Q psy9363 397 NLKYLNLASTNLRN 410 (421)
Q Consensus 397 ~L~~L~Ls~N~l~~ 410 (421)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34455555555443
No 72
>KOG0241|consensus
Probab=93.09 E-value=0.1 Score=55.61 Aligned_cols=66 Identities=30% Similarity=0.421 Sum_probs=50.2
Q ss_pred CCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG 254 (421)
Q Consensus 183 ~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g 254 (421)
...|.++....-.-+.+||+|....-. |+|.|++. |+++|+..|++||.|. |+.|.+++.+++...
T Consensus 1631 ~~~ge~v~~~~h~t~v~r~vg~tefq~----gveld~p~-gkndgs~gg~qyfrc~-p~~g~~vr~s~~~~~ 1696 (1714)
T KOG0241|consen 1631 RGFGERVVTVEHTTNVLRDVGFTEFQG----GVELDDPD-GKNDGSAGGLQYFRCL-PNKGGGVRVSDGLHH 1696 (1714)
T ss_pred hhcCceeEEeecccceeeecchhhccC----cccccCCC-CCcCccccceeEEeec-CCCCCcccchhhccC
Confidence 335556542223556788888775433 89999998 9999999999999998 899999999887433
No 73
>KOG4568|consensus
Probab=92.89 E-value=0.033 Score=58.38 Aligned_cols=69 Identities=33% Similarity=0.566 Sum_probs=59.7
Q ss_pred cCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 182 EDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 182 ~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
...+++|+..-+...++.||.|..-++.|.|.|++.|++. |+.+|++.+.+||.|. +.++.|....++.
T Consensus 154 ~l~v~dr~l~~gq~~~~~r~~~~t~fa~g~w~~~elde~~-~~~d~sv~k~~~~~~k-~ky~~f~~v~kv~ 222 (664)
T KOG4568|consen 154 GLRVGDRVLVGGQKSGTLRYSGHTKFASGSWLGVELDEPV-GKNDGSVGKVRYFQCK-PKYGKFAPVQKVF 222 (664)
T ss_pred ccccccceeecCcccchhhhhccccccCCcccchhccccc-ccccccccccccccCc-chhcchhHHHHHh
Confidence 3778888772235899999999999999999999999999 9999999999999997 7888888777663
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.82 E-value=0.064 Score=27.60 Aligned_cols=15 Identities=53% Similarity=0.696 Sum_probs=9.2
Q ss_pred CCCcEEECCCCCCCC
Q psy9363 20 PFIEDLDLSRNLLAS 34 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~ 34 (421)
++|+.|+|++|.|++
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 468888888888764
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.56 E-value=0.11 Score=29.13 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=11.6
Q ss_pred CCCCcEEECCCCCCCC
Q psy9363 19 VPFIEDLDLSRNLLAS 34 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~ 34 (421)
|++|++|||++|.|++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 5789999999999984
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.12 E-value=0.13 Score=28.31 Aligned_cols=11 Identities=55% Similarity=0.603 Sum_probs=4.8
Q ss_pred CcEEECcCCCC
Q psy9363 373 LEELYLQENNI 383 (421)
Q Consensus 373 L~~L~Ls~N~l 383 (421)
|++|||++|+|
T Consensus 2 L~~Ldls~n~l 12 (22)
T PF00560_consen 2 LEYLDLSGNNL 12 (22)
T ss_dssp ESEEEETSSEE
T ss_pred ccEEECCCCcC
Confidence 34444444444
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.79 E-value=0.15 Score=29.50 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=15.9
Q ss_pred CCCCcEEECCCCCCCChhhH
Q psy9363 19 VPFIEDLDLSRNLLASWFAV 38 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i 38 (421)
+.+|++|+|++|.|++++.+
T Consensus 1 L~~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 1 LTNLEELDLSQNKIKKIENL 20 (26)
T ss_pred CCccCEEECCCCccceecCc
Confidence 35889999999999876554
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.49 E-value=0.44 Score=47.45 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=47.3
Q ss_pred CCCccCCCC-CCCchhhhcCCCCCccEEEeeCc-ccchhhHHHHhccCCC--cEEEccCCcC---cccCCCCCC------
Q psy9363 303 NTNKLPIPN-DTSGVMEQIFPQGHIHTLTLGNM-GYIWADILKLLANFPV--TCLKLPSNRI---TTLDSVPGM------ 369 (421)
Q Consensus 303 ~L~~l~l~~-~~~~~~~~~l~~~~L~~L~Ls~N-~l~~~~i~~~~~~l~~--~~L~L~~N~l---~~l~~~~~~------ 369 (421)
+|+.|.+.+ ..+......++ ++|+.|++++| .+. .+|. +.|+++.|.+ ..+|..+..
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP-~nLe~L~Ls~Cs~L~---------sLP~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP-EGLEKLTVCHCPEIS---------GLPESVRSLEIKGSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred CCcEEEccCCCCcccCCchhh-hhhhheEccCccccc---------ccccccceEEeCCCCCcccccCcchHhheecccc
Confidence 667777664 11111111221 57888888877 443 1222 5666666553 334432211
Q ss_pred -----------C-CCCcEEECcCCCCCCCCcccccCcccccccccccccc
Q psy9363 370 -----------F-SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407 (421)
Q Consensus 370 -----------l-~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~ 407 (421)
+ ++|+.|++++|.....+ ..+ -.+|+.|+++.|.
T Consensus 143 n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP--~~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 143 NPENQARIDNLISPSLKTLSLTGCSNIILP--EKL--PESLQSITLHIEQ 188 (426)
T ss_pred ccccccccccccCCcccEEEecCCCcccCc--ccc--cccCcEEEecccc
Confidence 1 36777777776653221 122 1478888887764
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.29 E-value=0.2 Score=28.69 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=12.6
Q ss_pred cccccccccccccCcccC
Q psy9363 395 LPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 395 l~~L~~L~Ls~N~l~~i~ 412 (421)
+++|++|+|++|+|+.|+
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356777777777777664
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.29 E-value=0.2 Score=28.69 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=12.6
Q ss_pred cccccccccccccCcccC
Q psy9363 395 LPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 395 l~~L~~L~Ls~N~l~~i~ 412 (421)
+++|++|+|++|+|+.|+
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356777777777777664
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.10 E-value=0.53 Score=46.87 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=23.1
Q ss_pred cEEEccCC-cCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcc-cccccccccc
Q psy9363 351 TCLKLPSN-RITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL-PNLKYLNLAS 405 (421)
Q Consensus 351 ~~L~L~~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l-~~L~~L~Ls~ 405 (421)
+.|++++| .+..+|. +|+.|+++.|.+.. +..+ ++|+.|.+.+
T Consensus 97 e~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~------L~~LPssLk~L~I~~ 141 (426)
T PRK15386 97 EKLTVCHCPEISGLPE------SVRSLEIKGSATDS------IKNVPNGLTSLSINS 141 (426)
T ss_pred hheEccCccccccccc------ccceEEeCCCCCcc------cccCcchHhheeccc
Confidence 66666665 4444442 46666666555433 2233 3567777643
No 82
>KOG1947|consensus
Probab=88.36 E-value=0.55 Score=47.64 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=52.2
Q ss_pred hhhCCCCcEEECCCCC-CCChhhHHHHHhcCCCCceeecc-c--ccCCCC--CCcccccccccchhcccccc-CCcchhh
Q psy9363 16 EQAVPFIEDLDLSRNL-LASWFAVGEITCQLKHLRHLNLR-I--RLKSSS--APAHSYLAEVVFFVHLGRTL-CDEDFVK 88 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~-ls~~~~i~~~~~~l~~L~~L~L~-N--~l~~~~--~p~~~~~~~~L~~L~L~~~~-~~~~~~~ 88 (421)
...++.|+.|.++... +.+. .+.++....+.|+.|+++ . ...... .......+.+|+.|+|+.+. ++.. .
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~--~ 260 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDD-SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI--G 260 (482)
T ss_pred HhhCchhhHhhhcccccCChh-hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch--h
Confidence 3446666666666553 4432 244555566666666663 1 111000 11122234566666665443 2111 1
Q ss_pred HHHHHhhCCCCceeeecCCC-CCCccccchhHHHHHHhccCceeccCCc
Q psy9363 89 EGSLLHYLPKLSSLRFTKNP-ILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 89 ~~~ll~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
+..+...+++|++|.+...+ +++ .....+..+++.|+.|+++.
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~-----~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTD-----EGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccch-----hHHHHHHHhcCcccEEeeec
Confidence 22213346666666655444 221 22334455566666666653
No 83
>KOG4308|consensus
Probab=87.94 E-value=0.096 Score=53.49 Aligned_cols=133 Identities=22% Similarity=0.166 Sum_probs=81.7
Q ss_pred CccCcCCC--ChhHHhhhCCCCcEEECCCCCCCChhh--HHHHHhc----CCCCceeec-ccccCCCC---CCccccccc
Q psy9363 3 SRVSNAGK--THDEIEQAVPFIEDLDLSRNLLASWFA--VGEITCQ----LKHLRHLNL-RIRLKSSS---APAHSYLAE 70 (421)
Q Consensus 3 ~~i~~~g~--~~~~~~~~~~~L~~L~Ls~N~ls~~~~--i~~~~~~----l~~L~~L~L-~N~l~~~~---~p~~~~~~~ 70 (421)
|.+...|. ..+.+.. ++.++++|++.|.+..++. ++..+.+ ..++++|++ ++.++... +...+...+
T Consensus 154 c~l~~~g~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 154 CSLTSEGAAPLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE 232 (478)
T ss_pred ccccccchHHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence 44444453 3334444 7889999999999876653 3344443 667899999 56665211 011122333
Q ss_pred c-cchhccccccCCcc-hhhHHHHHhhC-CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363 71 V-VFFVHLGRTLCDED-FVKEGSLLHYL-PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE 138 (421)
Q Consensus 71 ~-L~~L~L~~~~~~~~-~~~~~~ll~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~ 138 (421)
. +..|++.+|.+.+. ...+...+..+ +.++.++++.|.|.+.. ......++..+++++.+.+...+
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~--~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG--VRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccc--hHHHHHHHhhhHHHHHhhcccCc
Confidence 4 67788888877333 33333334455 67799999999997664 33344567777788888877543
No 84
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=87.68 E-value=0.4 Score=27.62 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=18.7
Q ss_pred chhHHHHHHhccCceeccCCc
Q psy9363 116 VSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 116 ~~~~~~~i~~l~~L~~ln~s~ 136 (421)
++||..+|+.+|+|++||...
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred ccHHHHHHHHCCccceecccc
Confidence 578999999999999999853
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.53 E-value=0.5 Score=26.99 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=12.5
Q ss_pred CCCCcEEECcCCCCCCCC
Q psy9363 370 FSSLEELYLQENNIVDWG 387 (421)
Q Consensus 370 l~~L~~L~Ls~N~l~~~~ 387 (421)
+++|+.|+|++|+|+.++
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356777777777776654
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.53 E-value=0.5 Score=26.99 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=12.5
Q ss_pred CCCCcEEECcCCCCCCCC
Q psy9363 370 FSSLEELYLQENNIVDWG 387 (421)
Q Consensus 370 l~~L~~L~Ls~N~l~~~~ 387 (421)
+++|+.|+|++|+|+.++
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 356777777777776654
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.99 E-value=0.89 Score=26.62 Aligned_cols=15 Identities=47% Similarity=0.725 Sum_probs=13.5
Q ss_pred CCCcEEECCCCCCCC
Q psy9363 20 PFIEDLDLSRNLLAS 34 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~ 34 (421)
++|++|||++|.|.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 579999999999986
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.83 E-value=0.86 Score=26.30 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=10.8
Q ss_pred CCCcEEECcCCCCCCC
Q psy9363 371 SSLEELYLQENNIVDW 386 (421)
Q Consensus 371 ~~L~~L~Ls~N~l~~~ 386 (421)
.+|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4677777777777554
No 89
>KOG0473|consensus
Probab=83.79 E-value=0.11 Score=47.16 Aligned_cols=90 Identities=18% Similarity=0.089 Sum_probs=66.3
Q ss_pred hHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhHHH
Q psy9363 13 DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGS 91 (421)
Q Consensus 13 ~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 91 (421)
.+|. .+...+.||+|.|++-..+.-.. -++.|..|+++ |.+. ..|...+....++.+++.+|..+-.+. .
T Consensus 36 ~ei~-~~kr~tvld~~s~r~vn~~~n~s---~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~~~p~-s-- 106 (326)
T KOG0473|consen 36 REIA-SFKRVTVLDLSSNRLVNLGKNFS---ILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHSQQPK-S-- 106 (326)
T ss_pred hhhh-ccceeeeehhhhhHHHhhccchH---HHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchhhCCc-c--
Confidence 4555 57889999999999986654444 36788889996 8776 567777777788889996544422222 2
Q ss_pred HHhhCCCCceeeecCCCCCCc
Q psy9363 92 LLHYLPKLSSLRFTKNPILAE 112 (421)
Q Consensus 92 ll~~l~~L~~L~l~~N~l~~~ 112 (421)
.++.|.++++++.+||++..
T Consensus 107 -~~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 107 -QKKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred -ccccCCcchhhhccCcchHH
Confidence 67899999999999998544
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.20 E-value=2.6 Score=34.21 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=39.4
Q ss_pred hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
.+..+ ++|+.+.+..+ +. ++. ..+...+. +.+.+.+ .+..++... ..+++|+.+++..+ +..++ ...+.
T Consensus 30 ~F~~~--~~l~~i~~~~~-~~~i~~--~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~-~~~f~ 101 (129)
T PF13306_consen 30 AFSNC--TSLKSINFPNN-LTSIGD--NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIG-SSSFS 101 (129)
T ss_dssp TTTT---TT-SEEEESST-TSCE-T--TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEH-TTTTT
T ss_pred hcccc--ccccccccccc-ccccce--eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEc-hhhhc
Confidence 45566 67777777665 43 332 34555556 7777754 555454433 55677777777665 43433 33555
Q ss_pred cccccccccccc
Q psy9363 394 SLPNLKYLNLAS 405 (421)
Q Consensus 394 ~l~~L~~L~Ls~ 405 (421)
+. +|+.+.+..
T Consensus 102 ~~-~l~~i~~~~ 112 (129)
T PF13306_consen 102 NC-NLKEINIPS 112 (129)
T ss_dssp T--T--EEE-TT
T ss_pred CC-CceEEEECC
Confidence 55 666666654
No 91
>KOG1947|consensus
Probab=82.83 E-value=1.4 Score=44.55 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=72.7
Q ss_pred hhHHhhhCCCCcEEECCCC--CCCChh-hHHHHHhcCCCCceeecc--cccCCCCCCcccccccccchhcccccc-CCcc
Q psy9363 12 HDEIEQAVPFIEDLDLSRN--LLASWF-AVGEITCQLKHLRHLNLR--IRLKSSSAPAHSYLAEVVFFVHLGRTL-CDED 85 (421)
Q Consensus 12 ~~~~~~~~~~L~~L~Ls~N--~ls~~~-~i~~~~~~l~~L~~L~L~--N~l~~~~~p~~~~~~~~L~~L~L~~~~-~~~~ 85 (421)
-..+...|+.|++|+++.+ .+...+ ........+++|+.|+++ ..++...+......+++|++|.+.+|. ++.
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~- 284 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTD- 284 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccch-
Confidence 3467788999999999873 222222 123345567889999993 334422222222347899999987776 322
Q ss_pred hhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 86 FVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 86 ~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
..+..+..+++.|++|+++++..... .+.... ...+++|+.|...
T Consensus 285 -~gl~~i~~~~~~L~~L~l~~c~~~~d---~~l~~~-~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 285 -EGLVSIAERCPSLRELDLSGCHGLTD---SGLEAL-LKNCPNLRELKLL 329 (482)
T ss_pred -hHHHHHHHhcCcccEEeeecCccchH---HHHHHH-HHhCcchhhhhhh
Confidence 24444466899999999998876422 233334 4457777765543
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.34 E-value=2.3 Score=34.50 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=51.9
Q ss_pred hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCccccc
Q psy9363 316 VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNAL 392 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l 392 (421)
..|..+ ++|+.+.+.. .+. .+. ..+..++. +.+.+.++ +..++... ..+++|+.+.+.+ .+..++ ...+
T Consensus 6 ~~F~~~--~~l~~i~~~~-~~~~I~~--~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~-~~~F 77 (129)
T PF13306_consen 6 NAFYNC--SNLESITFPN-TIKKIGE--NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG-DNAF 77 (129)
T ss_dssp TTTTT---TT--EEEETS-T--EE-T--TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTT
T ss_pred HHHhCC--CCCCEEEECC-CeeEeCh--hhccccccccccccccc-ccccceeeeecccccccccccc-cccccc-cccc
Confidence 346677 8999999975 454 333 45666777 99999886 77777654 6777899999976 444544 3467
Q ss_pred CccccccccccccccCcc
Q psy9363 393 GSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 393 ~~l~~L~~L~Ls~N~l~~ 410 (421)
..+++|+.+++..+ +..
T Consensus 78 ~~~~~l~~i~~~~~-~~~ 94 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITE 94 (129)
T ss_dssp TT-TTECEEEETTT--BE
T ss_pred cccccccccccCcc-ccE
Confidence 77888988888765 443
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.11 E-value=0.89 Score=26.19 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=10.2
Q ss_pred ccccccccccccCccc
Q psy9363 396 PNLKYLNLASTNLRNI 411 (421)
Q Consensus 396 ~~L~~L~Ls~N~l~~i 411 (421)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 3566677777777654
No 94
>KOG4341|consensus
Probab=79.89 E-value=2.4 Score=41.88 Aligned_cols=92 Identities=13% Similarity=0.014 Sum_probs=40.8
Q ss_pred HhhhCCCCcEEECCCCC-CCChhhHHHHHhcCCCCceeec-c-cccCCCCCCcccccccccchhccccccCCcchhhHHH
Q psy9363 15 IEQAVPFIEDLDLSRNL-LASWFAVGEITCQLKHLRHLNL-R-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGS 91 (421)
Q Consensus 15 ~~~~~~~L~~L~Ls~N~-ls~~~~i~~~~~~l~~L~~L~L-~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 91 (421)
+...|..|+.|+.++-. +++ ..+.....+.++|++|-| . -+|+....-....++..|+.+++..+.. +.-..+.+
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~-~~d~tL~s 366 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL-ITDGTLAS 366 (483)
T ss_pred HhhhhhHhhhhcccCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce-ehhhhHhh
Confidence 34445566666665433 332 233333445566666666 2 3344222222223444555555544433 11112223
Q ss_pred HHhhCCCCceeeecCCC
Q psy9363 92 LLHYLPKLSSLRFTKNP 108 (421)
Q Consensus 92 ll~~l~~L~~L~l~~N~ 108 (421)
+-..+|.|+.|.+++..
T Consensus 367 ls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCE 383 (483)
T ss_pred hccCCchhccCChhhhh
Confidence 23355555555555444
No 95
>KOG0473|consensus
Probab=76.27 E-value=0.11 Score=47.18 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=65.7
Q ss_pred hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGS 394 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 394 (421)
.+..+ +..+.||++.|++- .+. -+..+.. ..|+++.|++..+|...+....+..+++.+|.++.. |.+++.
T Consensus 37 ei~~~--kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~--p~s~~k 109 (326)
T KOG0473|consen 37 EIASF--KRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ--PKSQKK 109 (326)
T ss_pred hhhcc--ceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC--Cccccc
Confidence 35577 88999999999986 322 1222233 679999999998887777788888899999988664 457888
Q ss_pred cccccccccccccCc
Q psy9363 395 LPNLKYLNLASTNLR 409 (421)
Q Consensus 395 l~~L~~L~Ls~N~l~ 409 (421)
.|.++.+++-+|.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 999999999888864
No 96
>KOG3864|consensus
Probab=68.45 E-value=2.1 Score=38.20 Aligned_cols=34 Identities=38% Similarity=0.420 Sum_probs=17.5
Q ss_pred CCCCcEEECcCCC-CCCCCcccccCccccccccccc
Q psy9363 370 FSSLEELYLQENN-IVDWGEVNALGSLPNLKYLNLA 404 (421)
Q Consensus 370 l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~Ls 404 (421)
.++|+.|++++|. |++.. ...+..+++|+.|++.
T Consensus 150 ~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhH-HHHHHHhhhhHHHHhc
Confidence 4556666665443 44433 3445555555555554
No 97
>KOG4341|consensus
Probab=63.88 E-value=7.2 Score=38.69 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=61.7
Q ss_pred hHHhhhCCCCcEEECCCCC-CCChhhHHHHHhcCCCCceeec-ccccC-CCCCCcccccccccchhccccccCC-cc-hh
Q psy9363 13 DEIEQAVPFIEDLDLSRNL-LASWFAVGEITCQLKHLRHLNL-RIRLK-SSSAPAHSYLAEVVFFVHLGRTLCD-ED-FV 87 (421)
Q Consensus 13 ~~~~~~~~~L~~L~Ls~N~-ls~~~~i~~~~~~l~~L~~L~L-~N~l~-~~~~p~~~~~~~~L~~L~L~~~~~~-~~-~~ 87 (421)
..+++.|++|+.|-|+..+ |++. .......+.+.|+.|++ .--.. -..+-.....++.|++|.|+.|-.. .+ +.
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDR-GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhh-hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh
Confidence 3556777777777777666 6653 23344455677777777 22111 1123333446777777777655321 11 11
Q ss_pred hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 88 KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 88 ~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
-....--.+..|+.|.|+..|.... ....-+..++.|+.++.-
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d-----~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITD-----ATLEHLSICRNLERIELI 434 (483)
T ss_pred hhhhccccccccceeeecCCCCchH-----HHHHHHhhCcccceeeee
Confidence 1111122466677777777776432 223345556666665554
No 98
>KOG3864|consensus
Probab=62.37 E-value=5.7 Score=35.52 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=39.4
Q ss_pred cccccchhccccccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 68 LAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 68 ~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
.++.++.|.+.+|---+++ .+..+-.-.|+|+.|++++||=- +......+.++++|+.|.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~rI-----T~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPRI-----TDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchhhhheeccccchhhH-HHHHhcccccchheeeccCCCee-----chhHHHHHHHhhhhHHHHhcC
Confidence 4556677777766442331 22232335799999999999831 233456788888888776653
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.03 E-value=15 Score=20.72 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.5
Q ss_pred CCCCcEEECCCCC-CCC
Q psy9363 19 VPFIEDLDLSRNL-LAS 34 (421)
Q Consensus 19 ~~~L~~L~Ls~N~-ls~ 34 (421)
|++|++|+|++.. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 6899999999886 875
No 100
>KOG4308|consensus
Probab=34.95 E-value=7.9 Score=39.68 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCCCcEEECCCCCCCChh--hHHHHHhcCCC-Cceeec-ccccCCCC---CCcccccc-cccchhccccccCC-cchhhH
Q psy9363 19 VPFIEDLDLSRNLLASWF--AVGEITCQLKH-LRHLNL-RIRLKSSS---APAHSYLA-EVVFFVHLGRTLCD-EDFVKE 89 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~--~i~~~~~~l~~-L~~L~L-~N~l~~~~---~p~~~~~~-~~L~~L~L~~~~~~-~~~~~~ 89 (421)
..++++|.|+++.+++-+ .+...+...++ +..|++ +|.+.... ........ ..++++++..|.+. .....+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 457999999999998532 33445556666 777888 57666210 11112223 57799999766553 335556
Q ss_pred HHHHhhCCCCceeeecCCCCCCc
Q psy9363 90 GSLLHYLPKLSSLRFTKNPILAE 112 (421)
Q Consensus 90 ~~ll~~l~~L~~L~l~~N~l~~~ 112 (421)
...+..++.++.|.++.|++...
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccH
Confidence 66688899999999999998543
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.66 E-value=41 Score=41.47 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=16.9
Q ss_pred EccCCcCcccCCCC-CCCCCCcEEECcCCCCC
Q psy9363 354 KLPSNRITTLDSVP-GMFSSLEELYLQENNIV 384 (421)
Q Consensus 354 ~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~ 384 (421)
||++|+|+.|+... ..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35556665555433 44555666666666553
No 102
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=24.57 E-value=54 Score=18.68 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=12.1
Q ss_pred CcEEECCCCCCCChhhHHHHHhc
Q psy9363 22 IEDLDLSRNLLASWFAVGEITCQ 44 (421)
Q Consensus 22 L~~L~Ls~N~ls~~~~i~~~~~~ 44 (421)
|++|.|....+.+-..+...++.
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~ 24 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSG 24 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhcc
Confidence 56666666666543334444433
No 103
>PTZ00243 ABC transporter; Provisional
Probab=24.11 E-value=1.2e+02 Score=36.25 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=42.3
Q ss_pred CCCCceEEeec---CceeEEEEecccCC--CCCcEEEEEecCCC-------------CCCCCCeeCCEEeEecCCCC
Q psy9363 183 DDIGLRVCDSE---GHRGTIRYVGSVEG--TQGVWYGIDWDSET-------------RGKHDGSHNGVKYFWTHSTT 241 (421)
Q Consensus 183 ~~i~~rv~~l~---~~~~~~r~~G~ip~--~~g~~~gle~d~~~-------------~g~~~G~~~g~~~f~~~~~~ 241 (421)
-.+|.+|. .. ...|..||+|.+-. .++.+.||||.-+- ..-|+|.+.|.+.|.+....
T Consensus 125 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1560)
T PTZ00243 125 CMVGAEVV-STLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSN 200 (1560)
T ss_pred cccccEEE-eeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCC
Confidence 34677776 32 37999999999964 46688999997431 13589999999999776433
Done!