Query psy9363
Match_columns 421
No_of_seqs 303 out of 3433
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 17:13:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 1.2E-24 4.2E-29 233.4 1.0 103 312-419 622-726 (768)
2 3rgz_A Protein brassinosteroid 99.9 5.6E-23 1.9E-27 220.5 8.1 133 278-415 490-698 (768)
3 4eco_A Uncharacterized protein 99.9 2.2E-22 7.6E-27 211.4 11.9 84 325-411 489-581 (636)
4 3v47_A TOLL-like receptor 5B a 99.8 6.8E-21 2.3E-25 191.6 14.8 360 19-414 29-412 (455)
5 4ecn_A Leucine-rich repeat pro 99.8 6.9E-22 2.4E-26 212.9 7.4 82 325-409 729-819 (876)
6 4eco_A Uncharacterized protein 99.8 1.3E-21 4.4E-26 205.6 4.6 102 303-410 434-556 (636)
7 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-21 1.3E-25 184.5 5.2 257 20-415 50-311 (313)
8 3vq2_A TLR4, TOLL-like recepto 99.8 7.6E-21 2.6E-25 198.2 7.6 107 303-412 425-537 (606)
9 3t6q_A CD180 antigen; protein- 99.8 8.3E-21 2.9E-25 197.9 5.9 134 279-414 351-494 (606)
10 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-19 7.1E-24 183.9 15.4 103 20-136 21-124 (520)
11 4ecn_A Leucine-rich repeat pro 99.8 2.5E-20 8.5E-25 200.8 8.2 354 11-413 440-844 (876)
12 2z63_A TOLL-like receptor 4, v 99.8 3E-20 1E-24 192.0 8.1 109 18-137 50-159 (570)
13 3o6n_A APL1; leucine-rich repe 99.8 2.1E-19 7.2E-24 177.3 12.7 98 303-409 249-352 (390)
14 3oja_B Anopheles plasmodium-re 99.8 1.5E-19 5.3E-24 188.4 12.0 98 303-409 255-358 (597)
15 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-19 7.2E-24 185.0 12.8 65 318-384 357-423 (549)
16 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1E-19 3.4E-24 188.3 8.5 126 278-410 377-511 (562)
17 3t6q_A CD180 antigen; protein- 99.8 4.1E-20 1.4E-24 192.6 4.8 107 303-413 351-466 (606)
18 2id5_A Lingo-1, leucine rich r 99.8 1.3E-19 4.4E-24 183.6 7.5 293 20-409 32-333 (477)
19 2id5_A Lingo-1, leucine rich r 99.8 4.4E-20 1.5E-24 187.0 3.9 276 16-385 52-334 (477)
20 3vq2_A TLR4, TOLL-like recepto 99.8 6E-20 2E-24 191.4 4.4 106 303-412 400-513 (606)
21 1ziw_A TOLL-like receptor 3; i 99.8 3E-19 1E-23 188.8 9.0 107 303-412 481-600 (680)
22 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-19 4.4E-24 196.4 5.8 87 315-410 307-395 (844)
23 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-18 6.2E-23 180.3 14.2 98 313-413 460-559 (635)
24 2z7x_B TOLL-like receptor 1, v 99.8 1.5E-18 5.3E-23 177.5 12.5 360 12-410 38-482 (520)
25 2z81_A CD282 antigen, TOLL-lik 99.8 5.7E-19 1.9E-23 181.8 8.2 108 19-137 25-133 (549)
26 2z63_A TOLL-like receptor 4, v 99.7 7.3E-19 2.5E-23 181.6 6.6 109 16-136 72-186 (570)
27 3v47_A TOLL-like receptor 5B a 99.7 2.4E-19 8.3E-24 180.2 2.9 350 21-413 11-388 (455)
28 1ziw_A TOLL-like receptor 3; i 99.7 7.2E-19 2.4E-23 185.8 5.9 112 12-136 66-180 (680)
29 3j0a_A TOLL-like receptor 5; m 99.7 2.8E-18 9.4E-23 185.9 8.6 113 17-138 45-159 (844)
30 3o6n_A APL1; leucine-rich repe 99.7 1.1E-17 3.8E-22 164.9 11.8 271 11-414 60-336 (390)
31 3oja_B Anopheles plasmodium-re 99.7 3.7E-18 1.3E-22 177.9 8.8 273 10-414 65-342 (597)
32 1o6v_A Internalin A; bacterial 99.7 7.1E-18 2.4E-22 170.4 9.5 121 279-412 266-391 (466)
33 4fmz_A Internalin; leucine ric 99.7 1.6E-17 5.4E-22 161.0 11.6 100 18-137 42-142 (347)
34 4g8a_A TOLL-like receptor 4; l 99.7 7.8E-19 2.7E-23 183.1 2.4 103 303-409 470-580 (635)
35 4fmz_A Internalin; leucine ric 99.7 3.6E-17 1.2E-21 158.4 13.6 277 17-409 63-346 (347)
36 1xku_A Decorin; proteoglycan, 99.7 5.1E-17 1.7E-21 156.5 14.1 104 19-137 51-155 (330)
37 3zyi_A Leucine-rich repeat-con 99.7 1.3E-17 4.3E-22 167.9 9.6 88 318-409 214-303 (452)
38 1xku_A Decorin; proteoglycan, 99.7 7.6E-17 2.6E-21 155.3 14.3 99 21-137 32-131 (330)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6.2E-18 2.1E-22 174.8 5.8 104 19-136 51-155 (562)
40 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.6E-22 166.0 8.9 87 318-408 203-291 (440)
41 2z66_A Variable lymphocyte rec 99.7 1.1E-17 3.8E-22 159.3 6.4 107 19-136 27-135 (306)
42 2ft3_A Biglycan; proteoglycan, 99.7 3.7E-17 1.2E-21 157.7 9.9 108 11-136 19-132 (332)
43 2ft3_A Biglycan; proteoglycan, 99.7 1.1E-16 3.7E-21 154.4 12.9 104 19-137 53-157 (332)
44 1ozn_A Reticulon 4 receptor; N 99.7 9E-17 3.1E-21 151.5 10.3 83 324-409 153-238 (285)
45 1ogq_A PGIP-2, polygalacturona 99.7 6.1E-17 2.1E-21 155.1 8.7 228 46-416 50-287 (313)
46 1wwl_A Monocyte differentiatio 99.7 4E-18 1.4E-22 163.2 0.1 87 317-411 223-311 (312)
47 1o6v_A Internalin A; bacterial 99.7 5.7E-16 1.9E-20 156.5 15.7 278 16-412 86-369 (466)
48 4fcg_A Uncharacterized protein 99.7 2.6E-17 9E-22 158.7 5.3 94 314-411 221-316 (328)
49 2z62_A TOLL-like receptor 4, v 99.7 2.6E-16 8.8E-21 147.7 11.1 93 315-410 142-238 (276)
50 2z80_A TOLL-like receptor 2, v 99.6 4.7E-17 1.6E-21 158.3 4.9 106 20-136 52-158 (353)
51 3o53_A Protein LRIM1, AGAP0063 99.6 3.5E-17 1.2E-21 157.0 3.2 244 12-410 26-277 (317)
52 3bz5_A Internalin-J, INLJ; leu 99.6 9.2E-17 3.1E-21 162.0 5.0 325 12-415 35-392 (457)
53 3bz5_A Internalin-J, INLJ; leu 99.6 2.4E-15 8.2E-20 151.6 15.1 78 42-137 38-116 (457)
54 1wwl_A Monocyte differentiatio 99.6 7.6E-17 2.6E-21 154.3 2.8 87 319-411 198-289 (312)
55 1h6u_A Internalin H; cell adhe 99.6 3E-15 1E-19 143.0 12.7 97 19-135 40-137 (308)
56 3oja_A Leucine-rich immune mol 99.6 2.9E-16 9.9E-21 159.6 5.9 95 19-135 33-128 (487)
57 2z66_A Variable lymphocyte rec 99.6 3.8E-16 1.3E-20 148.7 6.0 93 314-410 167-262 (306)
58 2o6q_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 138.2 12.4 100 21-135 17-117 (270)
59 3o53_A Protein LRIM1, AGAP0063 99.6 6.6E-16 2.2E-20 148.1 5.8 233 20-409 10-250 (317)
60 4fcg_A Uncharacterized protein 99.6 4.9E-15 1.7E-19 142.8 11.5 97 313-415 197-295 (328)
61 1jl5_A Outer protein YOPM; leu 99.6 2.7E-15 9.2E-20 151.1 9.4 99 303-411 298-411 (454)
62 3rfs_A Internalin B, repeat mo 99.6 3.9E-15 1.3E-19 139.5 9.5 88 316-415 151-240 (272)
63 3zyj_A Leucine-rich repeat-con 99.6 4.2E-15 1.4E-19 149.0 9.9 90 317-413 180-272 (440)
64 4glp_A Monocyte differentiatio 99.6 6.1E-15 2.1E-19 140.8 10.5 234 21-410 65-308 (310)
65 2ca6_A RAN GTPase-activating p 99.6 5.4E-15 1.8E-19 145.5 10.2 94 16-109 28-134 (386)
66 1ozn_A Reticulon 4 receptor; N 99.6 1.7E-14 5.8E-19 135.8 12.4 92 316-412 123-217 (285)
67 3zyi_A Leucine-rich repeat-con 99.5 6.7E-15 2.3E-19 148.0 9.2 90 317-413 191-283 (452)
68 1z7x_W Ribonuclease inhibitor; 99.5 4.5E-15 1.5E-19 149.1 7.8 121 16-139 52-182 (461)
69 1z7x_W Ribonuclease inhibitor; 99.5 2.9E-15 9.8E-20 150.5 5.6 130 280-411 201-356 (461)
70 3goz_A Leucine-rich repeat-con 99.5 2.3E-14 7.9E-19 139.9 11.8 124 11-137 13-148 (362)
71 1p9a_G Platelet glycoprotein I 99.5 1.3E-14 4.3E-19 137.4 9.2 100 18-135 8-108 (290)
72 3g06_A SSPH2 (leucine-rich rep 99.5 8.5E-14 2.9E-18 145.0 15.3 97 303-411 202-299 (622)
73 3oja_A Leucine-rich immune mol 99.5 2.9E-15 9.8E-20 152.3 3.1 216 12-404 51-270 (487)
74 3rfs_A Internalin B, repeat mo 99.5 4E-14 1.4E-18 132.6 9.7 92 317-414 128-222 (272)
75 2z80_A TOLL-like receptor 2, v 99.5 1.7E-14 5.8E-19 140.2 7.0 106 16-136 27-133 (353)
76 2z0w_A CAP-Gly domain-containi 99.5 4E-14 1.4E-18 108.7 6.9 84 181-266 9-92 (96)
77 1jl5_A Outer protein YOPM; leu 99.5 3.9E-14 1.3E-18 142.6 7.7 97 19-136 10-120 (454)
78 1h6t_A Internalin B; cell adhe 99.4 4.4E-13 1.5E-17 126.8 12.6 62 318-386 152-215 (291)
79 3goz_A Leucine-rich repeat-con 99.4 3.5E-13 1.2E-17 131.4 12.0 271 24-411 2-299 (362)
80 4b6m_A Tubulin-specific chaper 99.4 1.9E-13 6.4E-18 101.6 7.3 73 182-258 5-80 (84)
81 2ca6_A RAN GTPase-activating p 99.4 1.7E-13 5.7E-18 134.8 9.2 117 18-136 58-196 (386)
82 1lpl_A Hypothetical 25.4 kDa p 99.4 1.9E-13 6.5E-18 105.0 7.4 74 182-259 11-89 (95)
83 2e3i_A Restin; CAP-Gly, cytopl 99.4 2.2E-13 7.4E-18 102.5 7.5 75 183-260 3-78 (86)
84 2ast_B S-phase kinase-associat 99.4 9.2E-13 3.1E-17 126.6 14.0 101 21-137 48-152 (336)
85 1h6u_A Internalin H; cell adhe 99.4 7.4E-13 2.5E-17 126.3 12.8 99 17-135 60-159 (308)
86 1p9a_G Platelet glycoprotein I 99.4 4.4E-13 1.5E-17 126.8 11.0 90 314-409 116-208 (290)
87 3g06_A SSPH2 (leucine-rich rep 99.4 5.6E-13 1.9E-17 138.9 12.7 76 324-412 201-277 (622)
88 3rdv_A CAP-Gly domain-containi 99.4 3.9E-13 1.3E-17 97.7 8.0 67 183-252 3-70 (72)
89 2xwt_C Thyrotropin receptor; s 99.4 1.6E-13 5.5E-18 125.7 7.5 81 317-406 150-236 (239)
90 2ast_B S-phase kinase-associat 99.4 2.4E-13 8.1E-18 130.8 8.9 107 20-137 70-178 (336)
91 4glp_A Monocyte differentiatio 99.4 9.5E-14 3.2E-18 132.5 5.4 109 19-136 90-206 (310)
92 2o6q_A Variable lymphocyte rec 99.4 5.9E-13 2E-17 124.4 10.4 102 20-134 37-140 (270)
93 3ogk_B Coronatine-insensitive 99.4 9.3E-13 3.2E-17 136.4 12.3 94 316-411 430-528 (592)
94 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.6E-18 118.9 5.9 127 14-151 36-164 (176)
95 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.5E-17 135.8 12.5 95 21-135 22-117 (605)
96 1ixd_A Cylindromatosis tumour- 99.4 1.2E-12 3.9E-17 102.0 8.3 72 182-255 17-91 (104)
97 2e3h_A Restin; CAP-Gly, cytopl 99.4 1.1E-12 3.8E-17 99.4 7.6 69 183-254 2-71 (90)
98 2cp2_A CLIP-115, KIAA0291; mic 99.4 2.4E-12 8.3E-17 98.4 9.2 70 182-254 18-88 (95)
99 1whg_A Tubulin specific chaper 99.4 8.5E-13 2.9E-17 104.3 6.6 73 182-258 32-109 (113)
100 2cp0_A Clipr-59 protein, clipr 99.3 1.7E-12 5.8E-17 99.3 7.5 71 179-252 13-84 (95)
101 2cp3_A CLIP-115, KIAA0291; mic 99.3 2.5E-12 8.5E-17 96.3 8.0 68 182-252 7-75 (84)
102 1whh_A Clipr-59; microtubule b 99.3 3.1E-12 1E-16 99.0 8.7 74 181-257 24-98 (102)
103 1whl_A Cylindromatosis tumor s 99.3 2.2E-12 7.4E-17 99.4 7.6 70 182-253 7-87 (95)
104 1txq_A Dynactin 1; protein com 99.3 2.8E-12 9.6E-17 98.0 8.2 70 181-253 11-82 (93)
105 1whk_A 1700024K14RIK, riken cD 99.3 1.6E-12 5.3E-17 98.8 6.3 68 182-252 12-81 (91)
106 1whj_A 1700024K14RIK, riken cD 99.3 3.8E-12 1.3E-16 98.5 8.0 70 180-252 22-92 (102)
107 2cp6_A Restin; microtubule bin 99.3 3.8E-12 1.3E-16 106.8 8.6 77 179-259 35-112 (172)
108 2coz_A CAP350, centrosome-asso 99.3 3.5E-12 1.2E-16 101.7 7.5 68 182-252 31-99 (122)
109 2coy_A Dynactin-1; microtubule 99.3 5.7E-12 1.9E-16 99.2 8.3 69 181-252 32-102 (112)
110 2cp5_A Restin; microtubule bin 99.3 6.1E-12 2.1E-16 102.4 7.9 70 182-254 64-134 (141)
111 2cow_A Kinesin-like protein KI 99.3 8.3E-12 2.8E-16 96.2 8.1 67 183-252 24-91 (100)
112 3cvr_A Invasion plasmid antige 99.3 1.2E-11 4.1E-16 127.4 10.7 70 324-394 180-252 (571)
113 3m19_A Variable lymphocyte rec 99.2 2.7E-11 9.2E-16 111.8 11.0 88 317-409 102-192 (251)
114 2p1m_B Transport inhibitor res 99.2 1.1E-11 3.8E-16 128.2 9.0 113 14-133 124-241 (594)
115 3ogk_B Coronatine-insensitive 99.2 2.4E-12 8.2E-17 133.3 3.8 122 13-138 105-231 (592)
116 2ell_A Acidic leucine-rich nuc 99.2 3.8E-12 1.3E-16 110.0 4.0 119 17-145 46-165 (168)
117 3e6j_A Variable lymphocyte rec 99.2 3.8E-11 1.3E-15 109.4 9.3 123 283-410 45-173 (229)
118 2v9t_B SLIT homolog 2 protein 99.2 3.7E-11 1.3E-15 108.7 8.7 123 282-409 36-165 (220)
119 2je0_A Acidic leucine-rich nuc 99.2 2.4E-11 8.1E-16 102.7 6.5 109 17-135 39-148 (149)
120 1m9s_A Internalin B; cell inva 99.2 1.5E-10 5.3E-15 120.2 13.8 98 18-135 41-139 (605)
121 3m19_A Variable lymphocyte rec 99.2 8.2E-11 2.8E-15 108.5 10.1 127 283-413 40-172 (251)
122 1ds9_A Outer arm dynein; leuci 99.2 1.4E-11 4.9E-16 109.4 4.5 125 14-146 43-193 (198)
123 2v9t_B SLIT homolog 2 protein 99.2 5E-11 1.7E-15 107.8 7.8 108 303-414 33-146 (220)
124 4ay9_X Follicle-stimulating ho 99.1 1.2E-11 4.2E-16 119.9 3.8 77 324-407 177-257 (350)
125 2v70_A SLIT-2, SLIT homolog 2 99.1 8.6E-11 2.9E-15 106.3 8.2 103 303-409 58-166 (220)
126 2p1m_B Transport inhibitor res 99.1 6.2E-12 2.1E-16 130.2 -0.2 119 14-137 99-221 (594)
127 3e6j_A Variable lymphocyte rec 99.1 2.3E-10 8E-15 104.1 9.9 105 303-413 41-152 (229)
128 2je0_A Acidic leucine-rich nuc 99.1 2E-11 6.9E-16 103.1 2.6 95 313-412 33-129 (149)
129 2wfh_A SLIT homolog 2 protein 99.1 1.7E-10 5.9E-15 102.1 8.7 102 303-409 32-139 (193)
130 2ell_A Acidic leucine-rich nuc 99.1 7.6E-11 2.6E-15 101.7 6.2 107 303-413 50-164 (168)
131 2o6s_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 101.2 10.3 103 303-410 53-162 (208)
132 1a9n_A U2A', U2A'; complex (nu 99.1 1E-10 3.4E-15 101.9 6.2 82 325-410 43-127 (176)
133 2z62_A TOLL-like receptor 4, v 99.1 1.5E-10 5.3E-15 108.0 7.9 106 303-411 53-164 (276)
134 2o6s_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 100.8 10.1 106 303-413 29-141 (208)
135 3cvr_A Invasion plasmid antige 99.1 1.6E-10 5.3E-15 119.1 8.3 75 20-111 59-134 (571)
136 1w8a_A SLIT protein; signaling 99.1 1.4E-10 4.6E-15 102.7 6.6 90 317-410 49-140 (192)
137 2xot_A Amphoterin-induced prot 99.1 2.9E-10 9.8E-15 110.7 8.7 125 283-412 44-179 (361)
138 4ezg_A Putative uncharacterize 99.0 2.6E-10 9E-15 101.1 7.3 101 303-410 89-195 (197)
139 2o6r_A Variable lymphocyte rec 99.0 4.9E-10 1.7E-14 97.4 8.8 103 303-410 29-138 (177)
140 2v70_A SLIT-2, SLIT homolog 2 99.0 4.4E-10 1.5E-14 101.6 8.7 94 316-414 51-147 (220)
141 3g39_A Variable lymphocyte rec 99.0 3.9E-10 1.3E-14 97.7 7.0 85 324-410 30-116 (170)
142 4ay9_X Follicle-stimulating ho 99.0 2.5E-10 8.5E-15 110.7 5.8 84 324-412 154-240 (350)
143 1whm_A Cylindromatosis tumor s 99.0 1.6E-09 5.5E-14 81.2 8.2 67 182-251 9-82 (92)
144 1dce_A Protein (RAB geranylger 99.0 4.7E-10 1.6E-14 115.8 7.3 104 303-412 442-549 (567)
145 4ezg_A Putative uncharacterize 99.0 4.3E-10 1.5E-14 99.7 5.3 127 278-412 44-175 (197)
146 3rw6_A Nuclear RNA export fact 99.0 4E-10 1.4E-14 104.6 5.2 113 25-140 148-264 (267)
147 2wfh_A SLIT homolog 2 protein 98.9 1.5E-09 5E-14 96.1 8.2 88 324-414 31-120 (193)
148 2r9u_A Variable lymphocyte rec 98.9 8.3E-10 2.8E-14 96.0 6.4 85 324-410 33-119 (174)
149 2r9u_A Variable lymphocyte rec 98.9 7.4E-10 2.5E-14 96.4 5.4 87 20-113 33-121 (174)
150 1xeu_A Internalin C; cellular 98.9 1.3E-09 4.4E-14 101.3 7.4 97 303-411 64-165 (263)
151 1w8a_A SLIT protein; signaling 98.9 2.4E-10 8.3E-15 101.0 1.9 108 20-138 29-137 (192)
152 2xot_A Amphoterin-induced prot 98.9 1.2E-09 4.2E-14 106.2 6.8 106 303-413 40-153 (361)
153 1dce_A Protein (RAB geranylger 98.9 1.4E-09 4.9E-14 112.1 6.6 104 18-133 461-566 (567)
154 1h6t_A Internalin B; cell adhe 98.9 4.9E-09 1.7E-13 98.9 9.6 123 278-413 90-217 (291)
155 1xeu_A Internalin C; cellular 98.9 6.4E-09 2.2E-13 96.6 10.3 98 303-412 42-144 (263)
156 2xwt_C Thyrotropin receptor; s 98.9 1.4E-09 4.7E-14 99.3 4.7 129 277-413 54-197 (239)
157 2o6r_A Variable lymphocyte rec 98.8 8.9E-09 3E-13 89.4 8.9 88 324-413 28-117 (177)
158 4b8c_D Glucose-repressible alc 98.8 2.6E-09 8.9E-14 113.5 6.0 92 313-410 238-330 (727)
159 3g39_A Variable lymphocyte rec 98.8 5.4E-09 1.8E-13 90.4 6.5 87 20-112 30-117 (170)
160 3sb4_A Hypothetical leucine ri 98.8 1.3E-08 4.5E-13 97.5 9.4 84 324-412 226-313 (329)
161 4b8c_D Glucose-repressible alc 98.8 1.5E-09 5.1E-14 115.3 2.1 111 13-139 217-328 (727)
162 2ifg_A High affinity nerve gro 98.7 2E-08 6.8E-13 96.8 7.7 90 313-409 23-116 (347)
163 1ds9_A Outer arm dynein; leuci 98.7 1.8E-10 6.2E-15 102.2 -7.8 101 303-410 49-154 (198)
164 2ifg_A High affinity nerve gro 98.5 1.4E-07 4.7E-12 90.8 6.0 83 327-413 11-97 (347)
165 3un9_A NLR family member X1; l 98.4 5.6E-08 1.9E-12 94.9 2.0 117 19-138 100-222 (372)
166 3rw6_A Nuclear RNA export fact 98.4 3.7E-08 1.2E-12 91.3 -0.3 81 329-410 148-234 (267)
167 1io0_A Tropomodulin; LRR prote 98.4 3E-07 1E-11 80.5 5.6 124 15-140 31-164 (185)
168 3un9_A NLR family member X1; l 98.2 1.4E-06 4.9E-11 84.8 6.9 90 20-109 155-251 (372)
169 1io0_A Tropomodulin; LRR prote 97.9 3.4E-06 1.2E-10 73.7 2.6 93 17-109 62-163 (185)
170 2ra8_A Uncharacterized protein 97.5 5.9E-05 2E-09 73.0 4.3 65 68-135 250-315 (362)
171 3e4g_A ATP synthase subunit S, 97.3 9.1E-05 3.1E-09 63.8 2.8 104 20-131 61-171 (176)
172 3rfe_A Platelet glycoprotein I 97.2 0.00054 1.8E-08 56.0 5.8 33 351-383 34-67 (130)
173 3sb4_A Hypothetical leucine ri 97.1 0.00034 1.1E-08 66.5 4.9 94 303-403 227-328 (329)
174 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0016 5.5E-08 57.0 7.6 122 17-140 38-170 (197)
175 2ra8_A Uncharacterized protein 96.9 0.00051 1.8E-08 66.4 3.6 82 18-105 137-227 (362)
176 4fdw_A Leucine rich hypothetic 96.8 0.0017 5.7E-08 63.7 6.6 102 303-412 249-361 (401)
177 3e4g_A ATP synthase subunit S, 96.6 0.00033 1.1E-08 60.3 0.1 82 325-409 62-153 (176)
178 4fdw_A Leucine rich hypothetic 96.2 0.0057 1.9E-07 59.9 6.5 82 324-410 248-336 (401)
179 3rfe_A Platelet glycoprotein I 95.7 0.011 3.7E-07 48.1 4.6 56 351-409 11-68 (130)
180 1pgv_A TMD-1, tropomodulin TMD 95.3 0.0093 3.2E-07 52.1 3.3 104 303-408 42-169 (197)
181 4h09_A Hypothetical leucine ri 93.3 0.11 3.9E-06 49.7 6.3 98 303-406 241-343 (379)
182 4gt6_A Cell surface protein; l 92.6 0.23 7.8E-06 47.9 7.3 102 18-134 61-167 (394)
183 4gt6_A Cell surface protein; l 88.6 0.43 1.5E-05 45.9 5.1 82 318-406 284-367 (394)
184 4fs7_A Uncharacterized protein 87.9 0.53 1.8E-05 45.3 5.3 83 317-406 292-376 (394)
185 4h09_A Hypothetical leucine ri 86.8 0.88 3E-05 43.3 6.1 85 316-406 234-320 (379)
186 4fs7_A Uncharacterized protein 82.2 1.7 5.7E-05 41.7 5.7 86 316-411 270-357 (394)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.2e-24 Score=233.42 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=85.7
Q ss_pred CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcc
Q psy9363 312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEV 389 (421)
Q Consensus 312 ~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 389 (421)
+.+|..+..+ ++|+.|+|++|.++ +.+|..+..++. +.|+|++|+++ .+|..++.+++|+.|||++|++ .+.++
T Consensus 622 g~~~~~~~~l--~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l-~g~ip 697 (768)
T 3rgz_A 622 GHTSPTFDNN--GSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIP 697 (768)
T ss_dssp EECCCSCSSS--BCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EECCC
T ss_pred ccCchhhhcc--ccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc-cCcCC
Confidence 5567777888 89999999999998 556677888888 99999999998 6777778899999999999999 44557
Q ss_pred cccCccccccccccccccCcccCCCCCCCC
Q psy9363 390 NALGSLPNLKYLNLASTNLRNIKLNKEGHY 419 (421)
Q Consensus 390 ~~l~~l~~L~~L~Ls~N~l~~i~~p~~~~~ 419 (421)
..++.++.|+.|++++|++++ ++|..+.|
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g-~iP~~~~~ 726 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSG-PIPEMGQF 726 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEE-ECCSSSSG
T ss_pred hHHhCCCCCCEEECcCCcccc-cCCCchhh
Confidence 788899999999999999988 77776554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=5.6e-23 Score=220.51 Aligned_cols=133 Identities=18% Similarity=0.105 Sum_probs=91.6
Q ss_pred cceeeeeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHH---------
Q psy9363 278 VEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKL--------- 344 (421)
Q Consensus 278 ~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~--------- 344 (421)
.....+.++.+.+.......+....+|+.+++++ +.+|..+..+ ++|+.|+|++|.++ +.+|..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLFN-GTIPAAMFKQSGKIA 566 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC--TTCCEEECCSSEEE-SBCCGGGGTTTTCBC
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC--CCCCEEECCCCccC-CcCChHHhcccchhh
Confidence 3444555555544432223333333666777665 5677778888 88888888888876 222211
Q ss_pred -------------------------------------------------------------hccCCC-cEEEccCCcCc-
Q psy9363 345 -------------------------------------------------------------LANFPV-TCLKLPSNRIT- 361 (421)
Q Consensus 345 -------------------------------------------------------------~~~l~~-~~L~L~~N~l~- 361 (421)
+..++. +.|+|++|+++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 122456 78999999998
Q ss_pred ccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCCCC
Q psy9363 362 TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNK 415 (421)
Q Consensus 362 ~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p~ 415 (421)
.+|..++.++.|+.|+|++|++ .+.++..++.+++|+.|||++|++++ .+|.
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l-~g~ip~~l~~L~~L~~LdLs~N~l~g-~ip~ 698 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDG-RIPQ 698 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEE-CCCG
T ss_pred cCCHHHhccccCCEEeCcCCcc-CCCCChHHhCCCCCCEEECCCCcccC-cCCh
Confidence 5776678899999999999999 44557789999999999999999987 4443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=2.2e-22 Score=211.36 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=47.4
Q ss_pred CccEEEeeCcccchhhHHHHhc--cCCC-cEEEccCCcCcccCCCCCCCCCCcEEECc------CCCCCCCCcccccCcc
Q psy9363 325 HIHTLTLGNMGYIWADILKLLA--NFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQ------ENNIVDWGEVNALGSL 395 (421)
Q Consensus 325 ~L~~L~Ls~N~l~~~~i~~~~~--~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls------~N~l~~~~~~~~l~~l 395 (421)
+|+.|+|++|.++ .++..+. .+++ +.|+|++|+|+++|..+..+++|+.|+|+ +|++.. ..+..++.+
T Consensus 489 ~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~~l 565 (636)
T 4eco_A 489 LLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLC 565 (636)
T ss_dssp GCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGGGC
T ss_pred CccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc-cChHHHhcC
Confidence 6666666666665 2223333 5566 66666666666666555566666666663 333421 224455566
Q ss_pred ccccccccccccCccc
Q psy9363 396 PNLKYLNLASTNLRNI 411 (421)
Q Consensus 396 ~~L~~L~Ls~N~l~~i 411 (421)
++|+.|+|++|+++.|
T Consensus 566 ~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 566 PSLTQLQIGSNDIRKV 581 (636)
T ss_dssp SSCCEEECCSSCCCBC
T ss_pred CCCCEEECCCCcCCcc
Confidence 6666666666666443
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=6.8e-21 Score=191.56 Aligned_cols=360 Identities=14% Similarity=0.060 Sum_probs=193.2
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
.++|++|||++|.|++ ..+..++++++|++|+| +|.+.....+..+..+++|++|+|++|.+....+.. +..++
T Consensus 29 ~~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~ 103 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA---FNGLA 103 (455)
T ss_dssp CTTCCEEECCSSCCCE--ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT---TTTCT
T ss_pred CCccCEEEecCCccCc--CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh---ccCcc
Confidence 3689999999999984 34666888999999999 577763223445677899999999888765543333 66799
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccH-HHHHHhhccccchhhHHHHHHHhCCCCCCc
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSE-YDYIKEFGAVWLDEKRRAEFLEANPRVGDN 176 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n 176 (421)
+|++|+|++|.+.+.. .....++.+++|++|+++........... +..+..+... .+..|
T Consensus 104 ~L~~L~L~~n~l~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L---------------~L~~n 164 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAV----LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL---------------DLTFN 164 (455)
T ss_dssp TCCEEECTTSCCBTHH----HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE---------------ECTTC
T ss_pred cCCEEeCCCCCCCccc----cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE---------------eCCCC
Confidence 9999999999983311 11123788899999988753221110000 0000000000 11123
Q ss_pred ccccccCCCC-----ceEEeecCceeEEEEecccCCCCC--------cEEEEEecCCCCCCCCCeeCCEEeEecCCCCce
Q psy9363 177 YFQVMEDDIG-----LRVCDSEGHRGTIRYVGSVEGTQG--------VWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243 (421)
Q Consensus 177 ~~~~~~~~i~-----~rv~~l~~~~~~~r~~G~ip~~~g--------~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~g 243 (421)
.+.+...... ..+..+ ++..+.+.+..+...+ ....++..++..++..+.... .++.......-
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L--~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L 241 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLL--RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKI 241 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEE--ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCE
T ss_pred cccccChhhhhcccccccccc--ccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccce
Confidence 3222111000 111111 1111221111111100 112344444443322221100 00000000000
Q ss_pred eEEecCcc-ccCchhHHHhhhhhccccchhhhc--cccceeeeeecCceeEeecccchhhhhCCCccCCCC----CCCch
Q psy9363 244 SFMRRDKL-NFGSSFMEALHRKYVETDNELTVR--ENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGV 316 (421)
Q Consensus 244 sf~~~~~l-~~g~~~~~al~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~ 316 (421)
....+... ..+..+.. ..+. ......+. .......+.++...+.......+....+|+.+++++ +..+.
T Consensus 242 ~~L~l~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 242 QSLILSNSYNMGSSFGH---TNFK-DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp EEEECTTCTTTSCCTTC---CSSC-CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred eeEeeccccccccccch---hhhc-cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 00000000 00000000 0000 00000000 012344555655555444333343333777777776 34466
Q ss_pred hhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccC-CCCCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLD-SVPGMFSSLEELYLQENNIVDWGEVNALGS 394 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 394 (421)
.+..+ ++|+.|+|++|.++ ...+..+..+++ ++|+|++|+++.++ ..+..+++|+.|+|++|+|+.++ ...++.
T Consensus 318 ~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~ 393 (455)
T 3v47_A 318 AFWGL--THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP-DGIFDR 393 (455)
T ss_dssp TTTTC--TTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTTTTT
T ss_pred HhcCc--ccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC-HhHhcc
Confidence 78888 99999999999998 222355677888 99999999999774 44588999999999999998765 456788
Q ss_pred cccccccccccccCcccCCC
Q psy9363 395 LPNLKYLNLASTNLRNIKLN 414 (421)
Q Consensus 395 l~~L~~L~Ls~N~l~~i~~p 414 (421)
+++|+.|++++|+++. ..|
T Consensus 394 l~~L~~L~l~~N~l~~-~~~ 412 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDC-SCP 412 (455)
T ss_dssp CTTCCEEECCSSCBCC-CTT
T ss_pred CCcccEEEccCCCccc-CCC
Confidence 9999999999999986 444
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=6.9e-22 Score=212.87 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=40.8
Q ss_pred CccEEEeeCcccchhhHHHHhc--cCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcC------CCCCCCCcccccCcc
Q psy9363 325 HIHTLTLGNMGYIWADILKLLA--NFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQE------NNIVDWGEVNALGSL 395 (421)
Q Consensus 325 ~L~~L~Ls~N~l~~~~i~~~~~--~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~l~~l 395 (421)
+|+.|+|++|.|+ .++..+. .+++ +.|+|++|+|+++|..+..+++|+.|+|++ |++. ...+..++.+
T Consensus 729 ~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~-~~ip~~l~~L 805 (876)
T 4ecn_A 729 LLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL-RQWPTGITTC 805 (876)
T ss_dssp GCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC-CCCCTTGGGC
T ss_pred CccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccc-ccChHHHhcC
Confidence 5555555555555 1222232 4455 555555555555554445555555555544 3332 1223345555
Q ss_pred ccccccccccccCc
Q psy9363 396 PNLKYLNLASTNLR 409 (421)
Q Consensus 396 ~~L~~L~Ls~N~l~ 409 (421)
++|+.|+|++|+|.
T Consensus 806 ~~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 806 PSLIQLQIGSNDIR 819 (876)
T ss_dssp SSCCEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 55555555555553
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.3e-21 Score=205.57 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=73.7
Q ss_pred CCCccCCCC---CCCc-hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccC-------CC-cEEEccCCcCcccCCCCC-
Q psy9363 303 NTNKLPIPN---DTSG-VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANF-------PV-TCLKLPSNRITTLDSVPG- 368 (421)
Q Consensus 303 ~L~~l~l~~---~~~~-~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l-------~~-~~L~L~~N~l~~l~~~~~- 368 (421)
+|+.+.+++ ..+| ..+..+ ++|++|+|++|.++ .+. ..+... ++ +.|+|++|+|+.+|..+.
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l--~~L~~L~Ls~N~l~~i~~--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTG--SPLSSINLMGNMLTEIPK--NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTT--CCCSEEECCSSCCSBCCS--SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCEEECcCCccCcCCHHHHccC--CCCCEEECCCCCCCCcCH--HHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 555666654 3344 445668 89999999999988 221 222222 27 899999999998887665
Q ss_pred -CCCCCcEEECcCCCCCCCCcccccCccccccccccc------cccCcc
Q psy9363 369 -MFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA------STNLRN 410 (421)
Q Consensus 369 -~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls------~N~l~~ 410 (421)
.+++|+.|+|++|+|+.+ +..+..+++|+.|+|+ +|++.+
T Consensus 510 ~~l~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp TTCTTCCEEECCSSCCSSC--CCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred ccCCCcCEEECCCCCCCCc--ChhhhcCCCCCEEECCCCcccccCcccc
Confidence 889999999999999763 5578889999999994 566665
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.7e-21 Score=184.53 Aligned_cols=257 Identities=18% Similarity=0.142 Sum_probs=176.7
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc--cccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR--IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~--N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
.++++|+|++|.|+....+|..++++++|++|+|+ |.+. +.+|..++.+++|++|+|++|.+.+..+.. +..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDF---LSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGG---GGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcCCHH---HhCCC
Confidence 57999999999999322678889999999999994 8888 578888899999999999988876555543 67899
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCcc
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNY 177 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~ 177 (421)
+|++|++++|.+.. ..+..++.+++|++|+++..... +..+ ..
T Consensus 126 ~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~-------------~~~p------------------~~ 168 (313)
T 1ogq_A 126 TLVTLDFSYNALSG------TLPPSISSLPNLVGITFDGNRIS-------------GAIP------------------DS 168 (313)
T ss_dssp TCCEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCE-------------EECC------------------GG
T ss_pred CCCEEeCCCCccCC------cCChHHhcCCCCCeEECcCCccc-------------CcCC------------------HH
Confidence 99999999999843 34567889999999998743211 0011 00
Q ss_pred cccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363 178 FQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF 257 (421)
Q Consensus 178 ~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~ 257 (421)
+. .....+. ..+++.+++.|.+|...+...
T Consensus 169 l~----~l~~~L~--~L~L~~N~l~~~~~~~~~~l~-------------------------------------------- 198 (313)
T 1ogq_A 169 YG----SFSKLFT--SMTISRNRLTGKIPPTFANLN-------------------------------------------- 198 (313)
T ss_dssp GG----CCCTTCC--EEECCSSEEEEECCGGGGGCC--------------------------------------------
T ss_pred Hh----hhhhcCc--EEECcCCeeeccCChHHhCCc--------------------------------------------
Confidence 00 0000000 001222222222222111000
Q ss_pred HHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCCCccEEEeeCcccc
Q psy9363 258 MEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYI 337 (421)
Q Consensus 258 ~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N~l~ 337 (421)
...+.++.+.++ +.+|..+..+ ++|+.|+|++|.++
T Consensus 199 ----------------------L~~L~Ls~N~l~--------------------~~~~~~~~~l--~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 199 ----------------------LAFVDLSRNMLE--------------------GDASVLFGSD--KNTQKIHLAKNSLA 234 (313)
T ss_dssp ----------------------CSEEECCSSEEE--------------------ECCGGGCCTT--SCCSEEECCSSEEC
T ss_pred ----------------------ccEEECcCCccc--------------------CcCCHHHhcC--CCCCEEECCCCcee
Confidence 111111111111 4466778889 99999999999998
Q ss_pred hhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccccccccccccc-CcccCCC
Q psy9363 338 WADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN-LRNIKLN 414 (421)
Q Consensus 338 ~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~-l~~i~~p 414 (421)
..++. +..+++ ++|+|++|+|+ .+|..+..+++|+.|+|++|+++. . +...+.+++|+.|++++|+ +.+.++|
T Consensus 235 -~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~-ip~~~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 235 -FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-E-IPQGGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp -CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE-E-CCCSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred -eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc-c-CCCCccccccChHHhcCCCCccCCCCC
Confidence 22223 567788 99999999999 677667889999999999999953 2 3344889999999999998 7776665
Q ss_pred C
Q psy9363 415 K 415 (421)
Q Consensus 415 ~ 415 (421)
.
T Consensus 311 ~ 311 (313)
T 1ogq_A 311 A 311 (313)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=7.6e-21 Score=198.21 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=76.0
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L 376 (421)
+|+.+++++ +..|..+..+ ++|+.|+|++|.++...++..+..+++ ++|+|++|+++++++. +..+++|+.|
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGL--TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTC--TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECcCCCCCccchhhhcCC--CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 666666665 4455667777 788888888888761113345566777 8888888888866543 4778888888
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
+|++|+++... +..++.+++|++|++++|+|+.++
T Consensus 503 ~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 503 NMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp ECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCCEE
T ss_pred ECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcccC
Confidence 88888886643 567778888888888888887654
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=8.3e-21 Score=197.91 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=84.1
Q ss_pred ceeeeeecCceeEeec--ccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-c
Q psy9363 279 EEVKASINAPFLELVG--FDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-T 351 (421)
Q Consensus 279 ~~~~~~~~~~~~e~~g--~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~ 351 (421)
....+.++...+.... ...+....+|+.+.+++ +..+..+..+ ++|+.|++++|.+........+..+++ +
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC--PQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC--TTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC--ccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 3444555554444333 12222222666666664 3345567777 788888888888761111123556777 8
Q ss_pred EEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCC--cccccCccccccccccccccCcccCCC
Q psy9363 352 CLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWG--EVNALGSLPNLKYLNLASTNLRNIKLN 414 (421)
Q Consensus 352 ~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~l~~L~~L~Ls~N~l~~i~~p 414 (421)
+|++++|.++.+++. +..+++|+.|++++|.+.... .+..+..+++|+.|++++|+++++...
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 888888888765433 477888888888888885522 224577788888888888888876543
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=183.94 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=61.9
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
++|++|||++|.|+.. .+..+..+++|++|+| +|++. ...|..++.+++|++|+|++|.+. .++.. .+++
T Consensus 21 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-----~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISEL--WTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH-----PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCCCC--CHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEECC-----CCCC
T ss_pred ccccEEECCCCccccc--ChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCcc-----ccCC
Confidence 5777777777777632 3455667777777777 46666 233455566677777777666553 22221 4677
Q ss_pred CceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
|++|++++|.+.... .+..++.+++|++|+++.
T Consensus 92 L~~L~L~~N~l~~~~-----~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 92 LKHLDLSFNAFDALP-----ICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CSEEECCSSCCSSCC-----CCGGGGGCTTCCEEEEEE
T ss_pred ccEEeccCCcccccc-----chhhhccCCcceEEEecC
Confidence 777777777664321 123566666666666653
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=2.5e-20 Score=200.77 Aligned_cols=354 Identities=11% Similarity=0.045 Sum_probs=213.0
Q ss_pred ChhHHhhhCCCCcEEECCCCCCCCh---------------hhHHHHHh--cCCCCceeec-ccccCCCCCCccccccccc
Q psy9363 11 THDEIEQAVPFIEDLDLSRNLLASW---------------FAVGEITC--QLKHLRHLNL-RIRLKSSSAPAHSYLAEVV 72 (421)
Q Consensus 11 ~~~~~~~~~~~L~~L~Ls~N~ls~~---------------~~i~~~~~--~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L 72 (421)
.|.++. .+++|++|+|++|.|+.. +.+|..++ +|++|+.|+| +|++. +.+|..++.+++|
T Consensus 440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCCGGGGGCSSC
T ss_pred hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccChHHHhCCCCC
Confidence 566666 589999999999999941 03788777 9999999999 58888 6889889999999
Q ss_pred chhcccccc-CCc-chh-hHHHH---HhhCCCCceeeecCCCCCCccccchhHHH--HHHhccCceeccCCccChhhhhc
Q psy9363 73 FFVHLGRTL-CDE-DFV-KEGSL---LHYLPKLSSLRFTKNPILAEERVVSSREK--TIARLGGLKLLNGSAIERQERQG 144 (421)
Q Consensus 73 ~~L~L~~~~-~~~-~~~-~~~~l---l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~i~~l~~L~~ln~s~i~~~~r~~ 144 (421)
++|+|++|. +++ .++ .+..+ +..+++|++|+|++|.+.. .+. .++.+++|+.|+++....... .
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-------ip~~~~l~~L~~L~~L~Ls~N~l~~l-p 589 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-------FPASASLQKMVKLGLLDCVHNKVRHL-E 589 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-------CCCHHHHTTCTTCCEEECTTSCCCBC-C
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-------cCChhhhhcCCCCCEEECCCCCcccc-h
Confidence 999998885 766 433 34331 3467799999999999852 234 788999999999985432211 0
Q ss_pred cHHHHHHhhccccchhhHHHHHHHhCCCCCCcccccccCCCCceEEe-ec-CceeEEEEecccCCCCCcEE--EEEecCC
Q psy9363 145 SEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCD-SE-GHRGTIRYVGSVEGTQGVWY--GIDWDSE 220 (421)
Q Consensus 145 ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~i~~rv~~-l~-~~~~~~r~~G~ip~~~g~~~--gle~d~~ 220 (421)
.+..+..+.. -....|.+......+. .... +. .+++.+++. .+|...+... .++..++
T Consensus 590 -~~~~L~~L~~---------------L~Ls~N~l~~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 590 -AFGTNVKLTD---------------LKLDYNQIEEIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp -CCCTTSEESE---------------EECCSSCCSCCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred -hhcCCCcceE---------------EECcCCccccchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence 0000111100 0122344431111111 1111 11 134444433 5665443321 2555566
Q ss_pred CCCCCCCeeCCEE-eEecCCCCceeEEecCccccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchh
Q psy9363 221 TRGKHDGSHNGVK-YFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVH 299 (421)
Q Consensus 221 ~~g~~~G~~~g~~-~f~~~~~~~gsf~~~~~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~ 299 (421)
..++..|.+.... .+.......-....+...... .++..+... ...+..+.++.+.+..+....+.
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~------------l~~L~~L~Ls~N~L~~ip~~~~~ 718 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFAT------------GSPISTIILSNNLMTSIPENSLK 718 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHT------------TCCCSEEECCSCCCSCCCTTSSS
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHcc------------CCCCCEEECCCCcCCccChHHhc
Confidence 6555544332110 000000000111122221111 333332211 12233445555444432222111
Q ss_pred h-------hhCCCccCCCC---CCCchhhh--cCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccC------CcC
Q psy9363 300 E-------EQNTNKLPIPN---DTSGVMEQ--IFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPS------NRI 360 (421)
Q Consensus 300 ~-------~~~L~~l~l~~---~~~~~~~~--~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~------N~l 360 (421)
. ..+|+.|.|++ ..+|..+. .+ ++|+.|+|++|.|+ + ++..+..+++ +.|+|++ |++
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l--~~L~~L~Ls~N~L~-~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL--PYLSNMDVSYNCFS-S-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC--TTCCEEECCSSCCS-S-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred cccccccccCCccEEECCCCCCccchHHhhhccC--CCcCEEEeCCCCCC-c-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 1 11567777765 55677776 88 99999999999998 2 4455678899 9999977 666
Q ss_pred c-ccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363 361 T-TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 361 ~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
. .+|..+..+++|+.|+|++|+|..++ ..+. ++|+.|+|++|++..+.+
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip--~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDIRKVD--EKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBCC--SCCC--SSSCEEECCSCTTCEEEC
T ss_pred cccChHHHhcCCCCCEEECCCCCCCccC--Hhhc--CCCCEEECCCCCCCccCh
Confidence 5 57767788999999999999996654 3343 799999999999988764
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=3e-20 Score=192.03 Aligned_cols=109 Identities=21% Similarity=0.069 Sum_probs=56.5
Q ss_pred hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363 18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL 96 (421)
Q Consensus 18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l 96 (421)
.|++|++|||++|.|+.. .+..++++++|++|+| +|++.. ..|..++.+++|++|+|++|.+..-.... ++.+
T Consensus 50 ~l~~L~~L~Ls~n~i~~i--~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~l 123 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFP---IGHL 123 (570)
T ss_dssp TCSSCCEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCS---CTTC
T ss_pred CCCCceEEECCCCcCCcc--CcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccCCCcc---cccc
Confidence 345555555555555522 1233445555555555 355542 22333445555555555544432221111 4456
Q ss_pred CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
++|++|++++|.+.... .+..++++++|++|+++..
T Consensus 124 ~~L~~L~L~~n~l~~~~-----lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECTTS
T ss_pred ccccEEecCCCccceec-----ChhhhcccCCCCEEeCcCC
Confidence 77777777777664311 2345777788888877643
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=2.1e-19 Score=177.35 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=49.8
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L 376 (421)
+|+.+++++ +..|..+..+ ++|+.|+|++|.++ ++ .....+++ ++|+|++|+++.+|..+..+++|+.|
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVKM--QRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTTC--SSCCEEECCSSCCCEEE---CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred CccEEECCCCcCCCcChhHcccc--ccCCEEECCCCcCcccC---cccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence 444444443 2224445555 55555555555555 21 12234455 55555555555555444445555555
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
+|++|.|+.++ +..+++|+.|++++|+++
T Consensus 324 ~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 324 YLDHNSIVTLK----LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSCCCCCC----CCTTCCCSEEECCSSCEE
T ss_pred ECCCCccceeC----chhhccCCEEEcCCCCcc
Confidence 55555554432 344555555555555553
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.5e-19 Score=188.38 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=53.3
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L 376 (421)
+|+.+++++ +.+|..+..+ ++|+.|+|++|.++ ++ .....+|+ +.|+|++|.++.+|..+..+++|+.|
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKM--QRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTC--SSCCEEECTTSCCCEEE---CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred CCCEEECCCCccCCCCHHHhcCc--cCCCEEECCCCCCCCCC---cccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 445555544 2234455555 66666666666665 21 22334555 66666666666555444555666666
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
+|++|.|...+ ++.+++|+.|++++|++.
T Consensus 330 ~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 330 YLDHNSIVTLK----LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ECCSSCCCCCC----CCTTCCCSEEECCSSCEE
T ss_pred ECCCCCCCCcC----hhhcCCCCEEEeeCCCCC
Confidence 66666664432 445556666666666654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=2.1e-19 Score=184.98 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=34.5
Q ss_pred hhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCC
Q psy9363 318 EQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIV 384 (421)
Q Consensus 318 ~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~ 384 (421)
+..+ ++|+.|+|++|.++ .+.....+..+++ ++|+|++|+|+.+|..+..+++|+.|++++|.++
T Consensus 357 ~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 357 KGAW--PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp TTSS--TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred hhcc--ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence 3455 56666666666665 2222233455555 6666666666655554444455555555555543
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1e-19 Score=188.33 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=92.3
Q ss_pred cceeeeeecCceeEeecc--cchhhhhCCCccCCCC----CCCc-hhhhcCCCCCccEEEeeCcccchhhHHHHhccC-C
Q psy9363 278 VEEVKASINAPFLELVGF--DQVHEEQNTNKLPIPN----DTSG-VMEQIFPQGHIHTLTLGNMGYIWADILKLLANF-P 349 (421)
Q Consensus 278 ~~~~~~~~~~~~~e~~g~--~~l~~~~~L~~l~l~~----~~~~-~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l-~ 349 (421)
.....+.++.+.+..++- ..+....+|+.+++++ +.+| ..+..+ ++|+.|+|++|.++ +. ....+ +
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l--~~L~~L~l~~n~l~-~~---~~~~l~~ 450 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA--ESILVLNLSSNMLT-GS---VFRCLPP 450 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC--TTCCEEECCSSCCC-GG---GGSSCCT
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc--ccCCEEECCCCCCC-cc---hhhhhcC
Confidence 445566666665543221 1122222777777776 3244 357788 99999999999997 32 23445 4
Q ss_pred C-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363 350 V-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 350 ~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
+ +.|+|++|+|+.+|..+..+++|+.|+|++|+|+.++ ...+..+++|+.|++++|++..
T Consensus 451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCC-TTSTTTCTTCCCEECCSCCBCC
T ss_pred cCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCC-HHHHhcCCCCCEEEecCCCcCC
Confidence 6 9999999999999987889999999999999998765 3348899999999999999863
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=4.1e-20 Score=192.64 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=67.8
Q ss_pred CCCccCCCC---CCC---chhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCC-C-CCCCCCC
Q psy9363 303 NTNKLPIPN---DTS---GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDS-V-PGMFSSL 373 (421)
Q Consensus 303 ~L~~l~l~~---~~~---~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~-~~~l~~L 373 (421)
+|+.+++++ ... +..+..+ ++|+.|++++|.+. ...+..+..+++ ++|++++|+++.+.+ . +..+++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNL--SHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTC--TTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCCEEECCCCccccccCcchhcccC--CCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 555555554 111 3445666 77777777777766 112244556667 777777777775432 2 4667778
Q ss_pred cEEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363 374 EELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 374 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
+.|++++|.+.... +..++.+++|++|++++|++++..+
T Consensus 428 ~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 428 KVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp CEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred CEEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCcccc
Confidence 88888888775443 5567778888888888888776433
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=183.58 Aligned_cols=293 Identities=14% Similarity=0.033 Sum_probs=174.6
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
+++++|||++|.|+.. .+..+.++++|++|+| +|.+. ...|..++.+++|++|+|++|.+..-+... +..+++
T Consensus 32 ~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL--NQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---FTGLSN 105 (477)
T ss_dssp TTCSEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTS---STTCTT
T ss_pred CCCcEEECCCCccceE--CHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCccc---ccCCCC
Confidence 5899999999999854 2456788999999999 58888 345666778899999999888775444433 567999
Q ss_pred CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCccc
Q psy9363 99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYF 178 (421)
Q Consensus 99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 178 (421)
|++|+|++|.+... .+..++.+++|+.|+++....... .+ ..+
T Consensus 106 L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~l~~n~l~~~-------------~~------------------~~~ 148 (477)
T 2id5_A 106 LTKLDISENKIVIL------LDYMFQDLYNLKSLEVGDNDLVYI-------------SH------------------RAF 148 (477)
T ss_dssp CCEEECTTSCCCEE------CTTTTTTCTTCCEEEECCTTCCEE-------------CT------------------TSS
T ss_pred CCEEECCCCccccC------ChhHccccccCCEEECCCCcccee-------------Ch------------------hhc
Confidence 99999999998433 345678899999998864321100 00 000
Q ss_pred ccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhH
Q psy9363 179 QVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFM 258 (421)
Q Consensus 179 ~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~ 258 (421)
... .-...+ +++.+++.+..+...+....++..++..+... .+...
T Consensus 149 ~~l--~~L~~L-----~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-----------------------~~~~~---- 194 (477)
T 2id5_A 149 SGL--NSLEQL-----TLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-----------------------AIRDY---- 194 (477)
T ss_dssp TTC--TTCCEE-----EEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-----------------------EECTT----
T ss_pred cCC--CCCCEE-----ECCCCcCcccChhHhcccCCCcEEeCCCCcCc-----------------------EeChh----
Confidence 000 000001 11111111111100000000000000000000 00000
Q ss_pred HHhhhhhccccchhhhccccceeeeeecCce-eEeecccchhhhhCCCccCCCC---CCCc-hhhhcCCCCCccEEEeeC
Q psy9363 259 EALHRKYVETDNELTVRENVEEVKASINAPF-LELVGFDQVHEEQNTNKLPIPN---DTSG-VMEQIFPQGHIHTLTLGN 333 (421)
Q Consensus 259 ~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~e~~g~~~l~~~~~L~~l~l~~---~~~~-~~~~~l~~~~L~~L~Ls~ 333 (421)
.+........+.++... ...+... +....+|+.+.+++ ..+| ..+..+ ++|+.|+|++
T Consensus 195 --------------~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~ 257 (477)
T 2id5_A 195 --------------SFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSY 257 (477)
T ss_dssp --------------CSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTC--TTCCEEECCS
T ss_pred --------------hcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCcccccCHHHhcCc--cccCeeECCC
Confidence 00011112222332211 1111111 11111566666654 3333 567888 9999999999
Q ss_pred cccc-hhhHHHHhccCCC-cEEEccCCcCcccCC-CCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 334 MGYI-WADILKLLANFPV-TCLKLPSNRITTLDS-VPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 334 N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
|.++ .+ +..+..+++ +.|+|++|+++.+++ .+..+++|+.|+|++|+|+.++ ...+..+++|+.|+|++|++.
T Consensus 258 n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 258 NPISTIE--GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE-ESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCCCEEC--TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC-GGGBSCGGGCCEEECCSSCEE
T ss_pred CcCCccC--hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC-HhHcCCCcccCEEEccCCCcc
Confidence 9998 32 245677888 999999999997754 4588999999999999998765 567888999999999999986
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=4.4e-20 Score=187.03 Aligned_cols=276 Identities=15% Similarity=0.067 Sum_probs=164.1
Q ss_pred hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363 16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH 94 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~ 94 (421)
...+++|++|+|++|.|+.. .+..++++++|++|+| +|++.. ..+..++.+++|++|+|++|.+....+.. +.
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~ 125 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAV--EPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYM---FQ 125 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTT---TT
T ss_pred ccCCCCCCEEECCCCccCEe--ChhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhH---cc
Confidence 34689999999999999843 3567889999999999 588883 33334567899999999888775544433 67
Q ss_pred hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363 95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG 174 (421)
Q Consensus 95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (421)
.+++|++|++++|.+... .+..++.+++|+.|+++...-...... .+.... .
T Consensus 126 ~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~-----------------~-- 177 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYI------SHRAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLH-----------------G-- 177 (477)
T ss_dssp TCTTCCEEEECCTTCCEE------CTTSSTTCTTCCEEEEESCCCSSCCHH---HHTTCT-----------------T--
T ss_pred ccccCCEEECCCCcccee------ChhhccCCCCCCEEECCCCcCcccChh---HhcccC-----------------C--
Confidence 899999999999998433 345678899999998875322111000 000000 0
Q ss_pred CcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363 175 DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG 254 (421)
Q Consensus 175 ~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g 254 (421)
...+. +..+++.+..+........++..++..+...+.+ ++...
T Consensus 178 -----------L~~L~-----l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------~~~~~----------- 221 (477)
T 2id5_A 178 -----------LIVLR-----LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM---------TPNCL----------- 221 (477)
T ss_dssp -----------CCEEE-----EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE---------CTTTT-----------
T ss_pred -----------CcEEe-----CCCCcCcEeChhhcccCcccceeeCCCCcccccc---------Ccccc-----------
Confidence 00011 1111111111111111111111111101111111 00000
Q ss_pred chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEE
Q psy9363 255 SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLT 330 (421)
Q Consensus 255 ~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~ 330 (421)
.......+.++...+..+....+....+|+.+++++ +..+..+..+ ++|+.|+
T Consensus 222 ---------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~ 278 (477)
T 2id5_A 222 ---------------------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL--LRLQEIQ 278 (477)
T ss_dssp ---------------------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC--TTCCEEE
T ss_pred ---------------------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc--ccCCEEE
Confidence 000122233333333333222222223666666665 3334567888 9999999
Q ss_pred eeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCC
Q psy9363 331 LGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVD 385 (421)
Q Consensus 331 Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~ 385 (421)
|++|.++ ...+..+..+++ +.|+|++|+|+.++... ..+++|+.|+|++|.+..
T Consensus 279 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 279 LVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999998 222355678889 99999999999988654 788999999999999853
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=6e-20 Score=191.43 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCCccCCCC----CCCc-hhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcc--cCCCCCCCCCCc
Q psy9363 303 NTNKLPIPN----DTSG-VMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITT--LDSVPGMFSSLE 374 (421)
Q Consensus 303 ~L~~l~l~~----~~~~-~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~--l~~~~~~l~~L~ 374 (421)
+|+.+.+++ +..+ ..+..+ ++|+.|++++|.+. ..++..+..+++ ++|++++|.+++ +|..+..+++|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSL--EKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTC--TTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCeeECCCCccCCccChhhhhcc--ccCCEEECcCCCCC-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 566666665 3333 466777 88888888888887 223355667788 888888888885 566668888999
Q ss_pred EEECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363 375 ELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 375 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
.|+|++|+++... +..++.+++|++|+|++|+++++.
T Consensus 477 ~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 477 FLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp EEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCEE
T ss_pred EEECCCCcCCccC-hhhhcccccCCEEECCCCcCCCcC
Confidence 9999999886644 567888899999999999988753
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=3e-19 Score=188.76 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=85.3
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc--hhh-HH----HHhccCCC-cEEEccCCcCcccCCC-CCC
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI--WAD-IL----KLLANFPV-TCLKLPSNRITTLDSV-PGM 369 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~--~~~-i~----~~~~~l~~-~~L~L~~N~l~~l~~~-~~~ 369 (421)
+|+.+++++ +..+..+..+ ++|++|+|++|.++ |.. ++ ..+..++. ++|+|++|+|+.+|.. +..
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCEEECCCCCCCcCChhhhccc--cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 677777765 4445668888 99999999999998 211 00 12566788 9999999999999875 488
Q ss_pred CCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363 370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 370 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|+|+.++
T Consensus 559 l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCBCC
T ss_pred ccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCccC
Confidence 999999999999998765 556788999999999999999865
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=196.36 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=42.6
Q ss_pred chhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccccc
Q psy9363 315 GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNAL 392 (421)
Q Consensus 315 ~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l 392 (421)
+..+..+ ++|++|+|++|.++ ...+..+..+++ +.|+|++|.|+.+++. +..+++|+.|+|++|.++.++
T Consensus 307 ~~~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----- 378 (844)
T 3j0a_A 307 DEAFYGL--DNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----- 378 (844)
T ss_dssp TTTTTTC--SSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----
T ss_pred hHHhcCC--CCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----
Confidence 3445555 55555555555554 111123444555 5555555555554432 244555555555555554322
Q ss_pred CccccccccccccccCcc
Q psy9363 393 GSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 393 ~~l~~L~~L~Ls~N~l~~ 410 (421)
.+++|+.|++++|+++.
T Consensus 379 -~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 379 -FIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp -SCCSCSEEEEESCCCCC
T ss_pred -CCCCcchhccCCCCccc
Confidence 14444555555555443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=1.8e-18 Score=180.33 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=61.7
Q ss_pred CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccc
Q psy9363 313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~ 390 (421)
..+..+..+ +.|+.|+|++|.+....++..+..+++ ++|+|++|+|+++++. +..+++|++|+|++|+|+.++ +.
T Consensus 460 ~~~~~~~~~--~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~ 536 (635)
T 4g8a_A 460 AFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TF 536 (635)
T ss_dssp CCTTTTTTC--TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CG
T ss_pred ccccccccc--hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hh
Confidence 334555666 677777777776431112234555666 7777777777765443 366777777777777776654 45
Q ss_pred ccCccccccccccccccCcccCC
Q psy9363 391 ALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
.++.+++|+.|+|++|+|+.++.
T Consensus 537 ~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCBCCS
T ss_pred HHhCCCCCCEEECCCCcCCCCCH
Confidence 66677777777777777776543
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=177.47 Aligned_cols=360 Identities=13% Similarity=0.081 Sum_probs=189.7
Q ss_pred hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCc-chhhH
Q psy9363 12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDE-DFVKE 89 (421)
Q Consensus 12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~-~~~~~ 89 (421)
|..+. .+++|++|+|++|.|++ ..+..++++++|++|+| +|+++ .+|.. .+++|++|+|++|.+.+ ..+..
T Consensus 38 ~~~~~-~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~ 110 (520)
T 2z7x_B 38 TSDIL-SLSKLRILIISHNRIQY--LDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPICKE 110 (520)
T ss_dssp HHHHT-TCTTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGG
T ss_pred hhhcc-ccccccEEecCCCccCC--cChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccchhh
Confidence 44444 68999999999999984 34667889999999999 58888 35554 78899999998887754 33333
Q ss_pred HHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCc--eeccCCccCh--hhhhccHHHHHHh------------h
Q psy9363 90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGL--KLLNGSAIER--QERQGSEYDYIKE------------F 153 (421)
Q Consensus 90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L--~~ln~s~i~~--~~r~~ae~~~l~~------------~ 153 (421)
++.+++|++|++++|.+.. ..++.+++| +.|+++.... .....+.+..+.. .
T Consensus 111 ---~~~l~~L~~L~L~~n~l~~---------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 111 ---FGNMSQLKFLGLSTTHLEK---------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp ---GGGCTTCCEEEEEESSCCG---------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred ---hccCCcceEEEecCcccch---------hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 6779999999999999843 235556666 7666653221 0000000000000 0
Q ss_pred ccccc---------------hh------h-HHHHH--HHhCCCC-----CCcccccccC-----C-CCceEEeecCceeE
Q psy9363 154 GAVWL---------------DE------K-RRAEF--LEANPRV-----GDNYFQVMED-----D-IGLRVCDSEGHRGT 198 (421)
Q Consensus 154 ~~~~~---------------~~------~-~~~~~--~~~~~~~-----~~n~~~~~~~-----~-i~~rv~~l~~~~~~ 198 (421)
+..+. .+ . ....+ ....+.. ..+.+.+..+ . ....+. ..+++.
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~--~L~l~~ 256 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW--YFSISN 256 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS--EEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc--EEEeec
Confidence 00000 00 0 00000 0000000 0010000000 0 000111 236778
Q ss_pred EEEecccCCCC-----CcEEEEEecCCCCCCCCCeeCC-----------EEeE---ecCCCC-c--eeEEecCcccc-Cc
Q psy9363 199 IRYVGSVEGTQ-----GVWYGIDWDSETRGKHDGSHNG-----------VKYF---WTHSTT-S--GSFMRRDKLNF-GS 255 (421)
Q Consensus 199 ~r~~G~ip~~~-----g~~~gle~d~~~~g~~~G~~~g-----------~~~f---~~~~~~-~--gsf~~~~~l~~-g~ 255 (421)
+++.|.+|... +....++..+...+.. .+.. .+.+ .+.-.. . +.+..++.+.. +.
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred ccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence 88899888775 5544555544332221 1110 0000 000000 0 11111222211 11
Q ss_pred hhHHHhhhhhccccchhhhccccceeeeeecCceeEeecc--cchhhhhCCCccCCCC----CCCch-hhhcCCCCCccE
Q psy9363 256 SFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGF--DQVHEEQNTNKLPIPN----DTSGV-MEQIFPQGHIHT 328 (421)
Q Consensus 256 ~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~--~~l~~~~~L~~l~l~~----~~~~~-~~~~l~~~~L~~ 328 (421)
.+.+.+. ..+........+.++.+.+..++. ..+....+|+.+++++ +.+|. .+..+ ++|+.
T Consensus 335 ~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l--~~L~~ 403 (520)
T 2z7x_B 335 LLTDTVF---------ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT--KSLLS 403 (520)
T ss_dssp CCCTTTT---------TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC--TTCCE
T ss_pred ccChhhh---------hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC--ccCCE
Confidence 1111000 011223344555555554443211 1122222677777765 32443 36677 88888
Q ss_pred EEeeCcccchhhHHHHhccC-CC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccc
Q psy9363 329 LTLGNMGYIWADILKLLANF-PV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406 (421)
Q Consensus 329 L~Ls~N~l~~~~i~~~~~~l-~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N 406 (421)
|+|++|.++ +.+ ...+ ++ +.|+|++|+|+.+|..+..+++|+.|+|++|+|+.++ ...+..+++|++|++++|
T Consensus 404 L~Ls~N~l~-~~~---~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 404 LNMSSNILT-DTI---FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP-DGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp EECCSSCCC-GGG---GGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred EECcCCCCC-cch---hhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC-HHHhccCCcccEEECcCC
Confidence 888888886 222 2233 45 8888888888888876678888888888888887654 234778888888888888
Q ss_pred cCcc
Q psy9363 407 NLRN 410 (421)
Q Consensus 407 ~l~~ 410 (421)
+++.
T Consensus 479 ~~~c 482 (520)
T 2z7x_B 479 PWDC 482 (520)
T ss_dssp CBCC
T ss_pred CCcc
Confidence 8764
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=5.7e-19 Score=181.76 Aligned_cols=108 Identities=18% Similarity=0.086 Sum_probs=85.4
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
.++|++|||++|.|+.. .+..++.+++|++|+| +|++. ...|..++.+++|++|+|++|.+.+.++.. ++.++
T Consensus 25 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~ 98 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW---FGPLS 98 (549)
T ss_dssp CTTCCEEECCSSCCCEE--CSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHH---HTTCT
T ss_pred CCCccEEECcCCccCcc--ChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHH---hccCC
Confidence 36899999999999843 3556788999999999 59888 345566778899999999988876655543 67899
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
+|++|++++|.+.... .+..++.+++|++|+++..
T Consensus 99 ~L~~L~Ls~n~l~~~~-----~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLG-----VTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp TCCEEECTTCCCSSSC-----SSCSCTTCTTCCEEEEEES
T ss_pred CCcEEECCCCcccccc-----hhhhhhccCCccEEECCCC
Confidence 9999999999985432 1235788999999988753
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=7.3e-19 Score=181.59 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=81.3
Q ss_pred hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCc-chhhHHHHH
Q psy9363 16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDE-DFVKEGSLL 93 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~-~~~~~~~ll 93 (421)
...|++|++|+|++|.+++. .+..++.+++|++|++ +|++.. ..+..++.+++|++|+|++|.+.. .++.. +
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~---~ 145 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY---F 145 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGG---G
T ss_pred ccCchhCCEEeCcCCcCCcc--CHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhh---h
Confidence 44689999999999999843 3456788999999999 588884 223346788999999998886644 33333 6
Q ss_pred hhCCCCceeeecCCCCCCccccchhHHHHHHhccCc----eeccCCc
Q psy9363 94 HYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGL----KLLNGSA 136 (421)
Q Consensus 94 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L----~~ln~s~ 136 (421)
..+++|++|++++|.+... .+..++.+++| ..|+.+.
T Consensus 146 ~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 146 SNLTNLEHLDLSSNKIQSI------YCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp GGCTTCCEEECTTSCCCEE------CGGGGHHHHTCTTCCCEEECTT
T ss_pred cccCCCCEEeCcCCcccee------cHHHccchhccchhhhhcccCC
Confidence 7799999999999998443 23456667676 5666653
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=2.4e-19 Score=180.20 Aligned_cols=350 Identities=13% Similarity=0.016 Sum_probs=196.5
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcch-hhHHHHHhhCCC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDF-VKEGSLLHYLPK 98 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~-~~~~~ll~~l~~ 98 (421)
.-+.++.+++.++.++.+ .++|++|+| +|.+. ...|..++.+++|++|+|++|.+.+.+ +.. +..+++
T Consensus 11 ~~~~~~c~~~~l~~lp~l------~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~l~~ 80 (455)
T 3v47_A 11 IGYNAICINRGLHQVPEL------PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSS 80 (455)
T ss_dssp ETTEEECCSSCCSSCCCC------CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTT---TTTCTT
T ss_pred EccccCcCCCCcccCCCC------CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECccc---cccccc
Confidence 355799999999876542 378999999 58888 455667789999999999888764442 222 667999
Q ss_pred CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCccc
Q psy9363 99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYF 178 (421)
Q Consensus 99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 178 (421)
|++|+|++|.+.. ..+..++.+++|++|+++...-.+..... ..++... .++ +-....|.+
T Consensus 81 L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~----~L~-----~L~L~~n~l 141 (455)
T 3v47_A 81 LIILKLDYNQFLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSG----NFFKPLT----SLE-----MLVLRDNNI 141 (455)
T ss_dssp CCEEECTTCTTCE------ECTTTTTTCTTCCEEECTTSCCBTHHHHS----STTTTCT----TCC-----EEECCSSBC
T ss_pred CCEEeCCCCccCc------cChhhccCcccCCEEeCCCCCCCccccCc----ccccCcc----cCC-----EEECCCCcc
Confidence 9999999999843 33567889999999999864332110000 0011000 000 001223444
Q ss_pred ccccCCC-CceEEee-cCceeEEEEecccCCCCCcE--EEEEecCCCCCCCCCeeCCEE-eEecC---CCCceeEEecCc
Q psy9363 179 QVMEDDI-GLRVCDS-EGHRGTIRYVGSVEGTQGVW--YGIDWDSETRGKHDGSHNGVK-YFWTH---STTSGSFMRRDK 250 (421)
Q Consensus 179 ~~~~~~i-~~rv~~l-~~~~~~~r~~G~ip~~~g~~--~gle~d~~~~g~~~G~~~g~~-~f~~~---~~~~gsf~~~~~ 250 (421)
.+..... ......+ ..+++.+++.+..+...+.. ..++..++..+...+...... ...+. ....-....++.
T Consensus 142 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 221 (455)
T 3v47_A 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221 (455)
T ss_dssp CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT
T ss_pred CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC
Confidence 3221110 0000101 11344445555555443322 233444433222111000000 00000 000011111111
Q ss_pred cccCchhHHHhhhhhccccchhhhccccceeeeeecCce----------eEeecccchhhh--hCCCccCCCC----CCC
Q psy9363 251 LNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPF----------LELVGFDQVHEE--QNTNKLPIPN----DTS 314 (421)
Q Consensus 251 l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~----------~e~~g~~~l~~~--~~L~~l~l~~----~~~ 314 (421)
.......++++..... ......+.++... +.......+... .+|+.+++++ +.+
T Consensus 222 n~l~~~~~~~~~~~~~----------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 222 NGFKESMAKRFFDAIA----------GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp SCCCHHHHHHHHHHTT----------TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred Ccccccchhhhhcccc----------ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 1112223332222110 0112222222110 000011111111 1567777765 445
Q ss_pred chhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccccc
Q psy9363 315 GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNAL 392 (421)
Q Consensus 315 ~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l 392 (421)
|..+..+ ++|+.|+|++|.++ ...+..+..+++ ++|+|++|+++++++. +..+++|+.|+|++|+++... +..+
T Consensus 292 ~~~~~~l--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~ 367 (455)
T 3v47_A 292 KSVFSHF--TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSF 367 (455)
T ss_dssp TTTTTTC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTT
T ss_pred hhhcccC--CCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhc
Confidence 6778899 99999999999998 222355677889 9999999999987543 488999999999999997654 5688
Q ss_pred CccccccccccccccCcccCC
Q psy9363 393 GSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 393 ~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
..+++|++|+|++|+|+.++.
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCT
T ss_pred cccccccEEECCCCccccCCH
Confidence 999999999999999998654
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=7.2e-19 Score=185.82 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=78.2
Q ss_pred hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHH
Q psy9363 12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEG 90 (421)
Q Consensus 12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~ 90 (421)
|..+. .|++|++|+|++|.|+..+ +..++.+++|++|+| +|++. ...|..++.+++|++|+|++|.+.+..+..
T Consensus 66 ~~~~~-~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~- 140 (680)
T 1ziw_A 66 PELCQ-KLPMLKVLNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGT- 140 (680)
T ss_dssp TTHHH-HCTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCS-
T ss_pred HHHHh-cccCcCEEECCCCccCccC--hhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchh-
Confidence 44444 6899999999999998542 235778999999999 58887 344455678889999999877665543332
Q ss_pred HHHhhCCCCceeeecCCCCCCccccchhHHHH--HHhccCceeccCCc
Q psy9363 91 SLLHYLPKLSSLRFTKNPILAEERVVSSREKT--IARLGGLKLLNGSA 136 (421)
Q Consensus 91 ~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--i~~l~~L~~ln~s~ 136 (421)
+..+++|++|++++|.+.... +.. ...+++|+.|+++.
T Consensus 141 --~~~l~~L~~L~L~~n~l~~~~------~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 141 --QVQLENLQELLLSNNKIQALK------SEELDIFANSSLKKLELSS 180 (680)
T ss_dssp --SSCCTTCCEEECCSSCCCCBC------HHHHGGGTTCEESEEECTT
T ss_pred --hcccccCCEEEccCCcccccC------HHHhhccccccccEEECCC
Confidence 556888888888888874432 222 23446777777764
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=185.90 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=79.8
Q ss_pred hhCCCCcEEECCCCCCCChhhH-HHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363 17 QAVPFIEDLDLSRNLLASWFAV-GEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH 94 (421)
Q Consensus 17 ~~~~~L~~L~Ls~N~ls~~~~i-~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~ 94 (421)
..+++|++|||++|.+. ..+ +..+.++++|++|+| +|.+. ...|..++.+++|++|+|++|.+.+..+.... +.
T Consensus 45 ~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~ 120 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY-FR 120 (844)
T ss_dssp SSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCC-CS
T ss_pred cccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCcc-cc
Confidence 35788999999988554 234 556788888999999 58887 34566677888899999987776553222111 55
Q ss_pred hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363 95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE 138 (421)
Q Consensus 95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~ 138 (421)
.+++|++|+|++|.+.... .+..++.+++|+.|+++...
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SCSSCCEEEEESCCCCCCC-----CCGGGGTCSSCCEEEEESSC
T ss_pred ccCCCCEEECCCCcccccc-----cchhHhhCCCCCEEECCCCc
Confidence 6888899999988875432 12357888888888877543
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=1.1e-17 Score=164.94 Aligned_cols=271 Identities=13% Similarity=0.067 Sum_probs=177.2
Q ss_pred ChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhH
Q psy9363 11 THDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKE 89 (421)
Q Consensus 11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~ 89 (421)
.|.++...+++|++|+|++|.|++. .+..++.+++|++|+| +|++. ...|..++.+++|++|+|++|.+..-+..+
T Consensus 60 l~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 136 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CChhHhcccccCcEEECCCCccccc--ChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHH
Confidence 5666677899999999999999843 2446788999999999 59888 345556778999999999888775444443
Q ss_pred HHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHh
Q psy9363 90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEA 169 (421)
Q Consensus 90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~ 169 (421)
+..+++|++|++++|.+... .+..++.+++|+.|+++........ .+
T Consensus 137 ---~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~---------~~--------------- 183 (390)
T 3o6n_A 137 ---FHNTPKLTTLSMSNNNLERI------EDDTFQATTSLQNLQLSSNRLTHVD---------LS--------------- 183 (390)
T ss_dssp ---TTTCTTCCEEECCSSCCCBC------CTTTTSSCTTCCEEECCSSCCSBCC---------GG---------------
T ss_pred ---hcCCCCCcEEECCCCccCcc------ChhhccCCCCCCEEECCCCcCCccc---------cc---------------
Confidence 56799999999999998543 3456788999999998753221100 00
Q ss_pred CCCCCCcccccccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEec
Q psy9363 170 NPRVGDNYFQVMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRR 248 (421)
Q Consensus 170 ~~~~~~n~~~~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~ 248 (421)
. +.-...+. +.. .+.... .+. .++..++.
T Consensus 184 -------~-----l~~L~~L~-l~~n~l~~~~----~~~------~L~~L~l~--------------------------- 213 (390)
T 3o6n_A 184 -------L-----IPSLFHAN-VSYNLLSTLA----IPI------AVEELDAS--------------------------- 213 (390)
T ss_dssp -------G-----CTTCSEEE-CCSSCCSEEE----CCS------SCSEEECC---------------------------
T ss_pred -------c-----ccccceee-cccccccccC----CCC------cceEEECC---------------------------
Confidence 0 00000011 100 000000 000 00000000
Q ss_pred CccccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCC
Q psy9363 249 DKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGH 325 (421)
Q Consensus 249 ~~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~ 325 (421)
...+..+..... .+|+.+.+++ .. ...+..+ ++
T Consensus 214 --------------------------------------~n~l~~~~~~~~---~~L~~L~l~~n~l~~-~~~l~~l--~~ 249 (390)
T 3o6n_A 214 --------------------------------------HNSINVVRGPVN---VELTILKLQHNNLTD-TAWLLNY--PG 249 (390)
T ss_dssp --------------------------------------SSCCCEEECCCC---SSCCEEECCSSCCCC-CGGGGGC--TT
T ss_pred --------------------------------------CCeeeecccccc---ccccEEECCCCCCcc-cHHHcCC--CC
Confidence 000000000000 0344444443 22 2467788 99
Q ss_pred ccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccc
Q psy9363 326 IHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA 404 (421)
Q Consensus 326 L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls 404 (421)
|++|+|++|.++ ...+..+..+++ ++|+|++|+++.++.....+++|+.|+|++|++..+ +..+..+++|+.|+++
T Consensus 250 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 250 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLD 326 (390)
T ss_dssp CSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECC
T ss_pred ccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec--CccccccCcCCEEECC
Confidence 999999999998 222355677888 999999999998887667889999999999999764 3457788999999999
Q ss_pred cccCcccCCC
Q psy9363 405 STNLRNIKLN 414 (421)
Q Consensus 405 ~N~l~~i~~p 414 (421)
+|+|+.+++.
T Consensus 327 ~N~i~~~~~~ 336 (390)
T 3o6n_A 327 HNSIVTLKLS 336 (390)
T ss_dssp SSCCCCCCCC
T ss_pred CCccceeCch
Confidence 9999887643
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=3.7e-18 Score=177.94 Aligned_cols=273 Identities=13% Similarity=0.084 Sum_probs=180.2
Q ss_pred CChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhh
Q psy9363 10 KTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVK 88 (421)
Q Consensus 10 ~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~ 88 (421)
..|..+...+++|++|+|++|.|+.. .+..++.+++|++|+| +|.+. ...|..++.+++|++|+|++|.+..-+..
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCC--ChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 35667777899999999999999943 3456789999999999 59988 45555668899999999998877655554
Q ss_pred HHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHH
Q psy9363 89 EGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLE 168 (421)
Q Consensus 89 ~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~ 168 (421)
+ +..+++|++|+|++|.+... .+..++.+++|++|+++........ .+
T Consensus 142 ~---~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~---------~~-------------- 189 (597)
T 3oja_B 142 I---FHNTPKLTTLSMSNNNLERI------EDDTFQATTSLQNLQLSSNRLTHVD---------LS-------------- 189 (597)
T ss_dssp T---TTTCTTCCEEECCSSCCCBC------CTTTTTTCTTCCEEECTTSCCSBCC---------GG--------------
T ss_pred H---hccCCCCCEEEeeCCcCCCC------ChhhhhcCCcCcEEECcCCCCCCcC---------hh--------------
Confidence 4 57899999999999998543 3456889999999999753221100 00
Q ss_pred hCCCCCCcccccccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEe
Q psy9363 169 ANPRVGDNYFQVMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMR 247 (421)
Q Consensus 169 ~~~~~~~n~~~~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~ 247 (421)
.+. -...+. +.. .+... ..|.. ++..++..+.. ..+
T Consensus 190 --------~l~-----~L~~L~-l~~n~l~~l----~~~~~------L~~L~ls~n~l-~~~------------------ 226 (597)
T 3oja_B 190 --------LIP-----SLFHAN-VSYNLLSTL----AIPIA------VEELDASHNSI-NVV------------------ 226 (597)
T ss_dssp --------GCT-----TCSEEE-CCSSCCSEE----ECCTT------CSEEECCSSCC-CEE------------------
T ss_pred --------hhh-----hhhhhh-cccCccccc----cCCch------hheeeccCCcc-ccc------------------
Confidence 000 000011 100 01000 00000 01111110000 000
Q ss_pred cCccccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC--CCCchhhhcCCCCC
Q psy9363 248 RDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN--DTSGVMEQIFPQGH 325 (421)
Q Consensus 248 ~~~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~--~~~~~~~~~l~~~~ 325 (421)
. + .. . .+|+.+.+++ -..+..+..+ ++
T Consensus 227 ----~-~--------------------------------~~------~------~~L~~L~L~~n~l~~~~~l~~l--~~ 255 (597)
T 3oja_B 227 ----R-G--------------------------------PV------N------VELTILKLQHNNLTDTAWLLNY--PG 255 (597)
T ss_dssp ----E-C--------------------------------SC------C------SCCCEEECCSSCCCCCGGGGGC--TT
T ss_pred ----c-c--------------------------------cc------C------CCCCEEECCCCCCCCChhhccC--CC
Confidence 0 0 00 0 0233343433 1113567788 99
Q ss_pred ccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccc
Q psy9363 326 IHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA 404 (421)
Q Consensus 326 L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls 404 (421)
|+.|+|++|.++ +.++..+..+++ +.|+|++|.++.+|.....+++|+.|+|++|.+..+ +..++.+++|+.|+|+
T Consensus 256 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 256 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLD 332 (597)
T ss_dssp CSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECC
T ss_pred CCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc--CcccccCCCCCEEECC
Confidence 999999999998 223356777888 999999999999887777899999999999999764 4467889999999999
Q ss_pred cccCcccCCC
Q psy9363 405 STNLRNIKLN 414 (421)
Q Consensus 405 ~N~l~~i~~p 414 (421)
+|+|+.+++.
T Consensus 333 ~N~l~~~~~~ 342 (597)
T 3oja_B 333 HNSIVTLKLS 342 (597)
T ss_dssp SSCCCCCCCC
T ss_pred CCCCCCcChh
Confidence 9999887543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=7.1e-18 Score=170.45 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=85.7
Q ss_pred ceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEE
Q psy9363 279 EEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCL 353 (421)
Q Consensus 279 ~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L 353 (421)
....+.++...+.... .+....+|+.+++++ ..++. +..+ ++|+.|+|++|.++ ... +..+++ +.|
T Consensus 266 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~l--~~L~~L~L~~n~l~~~~~----~~~l~~L~~L 336 (466)
T 1o6v_A 266 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP-ISNL--KNLTYLTLYFNNISDISP----VSSLTKLQRL 336 (466)
T ss_dssp TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG-GGGC--TTCSEEECCSSCCSCCGG----GGGCTTCCEE
T ss_pred CCCEEECCCCccCccc--cccCCCccCeEEcCCCcccCchh-hcCC--CCCCEEECcCCcCCCchh----hccCccCCEe
Confidence 3444555554443222 122223677777765 23333 6778 89999999999888 321 567788 999
Q ss_pred EccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363 354 KLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 354 ~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
++++|.+++++ .+..+++|+.|++++|+++++. + +..+++|+.|++++|+++.++
T Consensus 337 ~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 337 FFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT-P--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp ECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG-G--GTTCTTCCEEECCCEEEECCC
T ss_pred ECCCCccCCch-hhccCCCCCEEeCCCCccCccc-h--hhcCCCCCEEeccCCcccCCc
Confidence 99999998874 4678899999999999997654 2 788899999999999998754
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=1.6e-17 Score=160.97 Aligned_cols=100 Identities=20% Similarity=0.151 Sum_probs=75.9
Q ss_pred hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363 18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL 96 (421)
Q Consensus 18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l 96 (421)
.+++|++|++++|.+.+++. ++.+++|++|++ +|++.. ++. ...+++|++|+|++|.+.. ++ . +..+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~---~-~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS---A-LQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG---G-GTTC
T ss_pred hcccccEEEEeCCccccchh----hhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch---H-HcCC
Confidence 56789999999999987643 567899999999 587773 344 6688899999998776643 22 2 6779
Q ss_pred CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
++|++|++++|.+.... . ++.+++|+.|+.+..
T Consensus 110 ~~L~~L~l~~n~i~~~~------~--~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 110 TNLRELYLNEDNISDIS------P--LANLTKMYSLNLGAN 142 (347)
T ss_dssp TTCSEEECTTSCCCCCG------G--GTTCTTCCEEECTTC
T ss_pred CcCCEEECcCCcccCch------h--hccCCceeEEECCCC
Confidence 99999999999885432 1 778888998888753
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=7.8e-19 Score=183.14 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=85.9
Q ss_pred CCCccCCCC-----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcE
Q psy9363 303 NTNKLPIPN-----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEE 375 (421)
Q Consensus 303 ~L~~l~l~~-----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~ 375 (421)
.++.+.+++ ...|..+..+ ++|+.|+|++|.|+ .-.+..+..+++ ++|+|++|+|+.+++. +..+++|++
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l--~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTEL--RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred hhhhhhhhhcccccccCchhhhhc--cccCEEECCCCccC-CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 677777765 3356778899 99999999999998 222356778899 9999999999998764 488999999
Q ss_pred EECcCCCCCCCCcccccCcc-ccccccccccccCc
Q psy9363 376 LYLQENNIVDWGEVNALGSL-PNLKYLNLASTNLR 409 (421)
Q Consensus 376 L~Ls~N~l~~~~~~~~l~~l-~~L~~L~Ls~N~l~ 409 (421)
|+|++|+|+... +..+..+ ++|+.|+|++|+++
T Consensus 547 L~Ls~N~l~~~~-~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 547 LDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EECTTSCCCBCC-SSCTTCCCTTCCEEECTTCCBC
T ss_pred EECCCCcCCCCC-HHHHHhhhCcCCEEEeeCCCCc
Confidence 999999997765 6778887 68999999999985
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=3.6e-17 Score=158.45 Aligned_cols=277 Identities=15% Similarity=0.137 Sum_probs=163.2
Q ss_pred hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363 17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY 95 (421)
Q Consensus 17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~ 95 (421)
..+++|++|+|++|.|++++. +..+++|++|+| +|.+.. ++ .++.+++|++|+|++|.+..-.. +..
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~-----~~~ 130 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISP-----LAN 130 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGG-----GTT
T ss_pred hhcCCccEEEccCCccccchh----hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchh-----hcc
Confidence 468999999999999997654 788999999999 588883 44 46788999999998887744322 667
Q ss_pred CCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCC
Q psy9363 96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGD 175 (421)
Q Consensus 96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (421)
+++|++|++++|+..... ..+..+++|+.|+.+.....+... +...+ .
T Consensus 131 l~~L~~L~l~~n~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~--------~~~l~--------------~--- 178 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDL-------SPLSNMTGLNYLTVTESKVKDVTP--------IANLT--------------D--- 178 (347)
T ss_dssp CTTCCEEECTTCTTCCCC-------GGGTTCTTCCEEECCSSCCCCCGG--------GGGCT--------------T---
T ss_pred CCceeEEECCCCCCcccc-------cchhhCCCCcEEEecCCCcCCchh--------hccCC--------------C---
Confidence 999999999999764432 237889999999887543221100 00000 0
Q ss_pred cccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCc
Q psy9363 176 NYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGS 255 (421)
Q Consensus 176 n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~ 255 (421)
-..+. +. .+++.+ ++. ...+..++..+...+... .
T Consensus 179 ----------L~~L~-l~----~n~l~~-~~~-~~~l~~L~~L~l~~n~l~-----------------------~----- 213 (347)
T 4fmz_A 179 ----------LYSLS-LN----YNQIED-ISP-LASLTSLHYFTAYVNQIT-----------------------D----- 213 (347)
T ss_dssp ----------CSEEE-CT----TSCCCC-CGG-GGGCTTCCEEECCSSCCC-----------------------C-----
T ss_pred ----------CCEEE-cc----CCcccc-ccc-ccCCCccceeecccCCCC-----------------------C-----
Confidence 00011 00 000000 000 000000111111100000 0
Q ss_pred hhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCCccEEEee
Q psy9363 256 SFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGHIHTLTLG 332 (421)
Q Consensus 256 ~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls 332 (421)
+.. +........+.+++..+..... +....+|+.+++++ ..+ ..+..+ ++|+.|+++
T Consensus 214 -~~~--------------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l--~~L~~L~l~ 273 (347)
T 4fmz_A 214 -ITP--------------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDL--TKLKMLNVG 273 (347)
T ss_dssp -CGG--------------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTC--TTCCEEECC
T ss_pred -Cch--------------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcC--CCcCEEEcc
Confidence 000 0111122333343433322221 22222666666665 223 346677 888888898
Q ss_pred Ccccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 333 NMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 333 ~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
+|.++ + ..+..+++ +.|++++|.++.+++. +..+++|+.|++++|.++... .+..+++|+.|++++|+|+
T Consensus 274 ~n~l~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 274 SNQISDI----SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR---PLASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCCC----GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG---GGGGCTTCSEESSSCC---
T ss_pred CCccCCC----hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc---Chhhhhccceeehhhhccc
Confidence 88888 4 23566788 8889988888865433 367888888999998887643 2778888889999888876
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=5.1e-17 Score=156.53 Aligned_cols=104 Identities=20% Similarity=0.121 Sum_probs=82.0
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
.++|++|+|++|.|+.+. +..++++++|++|+| +|++. ...|..++.+++|++|+|++|.+..-+.. .++
T Consensus 51 ~~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------~~~ 121 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEK------MPK 121 (330)
T ss_dssp CTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSS------CCT
T ss_pred CCCCeEEECCCCcCCEeC--hhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChh------hcc
Confidence 368999999999999653 345788999999999 58888 34566778889999999988876432222 248
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
+|++|++++|.+.. ..+..++.+++|+.|+++..
T Consensus 122 ~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 122 TLQELRVHENEITK------VRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp TCCEEECCSSCCCB------BCHHHHTTCTTCCEEECCSS
T ss_pred cccEEECCCCcccc------cCHhHhcCCccccEEECCCC
Confidence 99999999999843 34567899999999998753
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.3e-17 Score=167.94 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=62.6
Q ss_pred hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363 318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSL 395 (421)
Q Consensus 318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 395 (421)
+..+ ++|+.|+|++|.|+ ...+..+..+++ +.|+|++|+++.+++. +..+++|+.|+|++|+|+..+ ...+..+
T Consensus 214 ~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l 289 (452)
T 3zyi_A 214 LTPL--VGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPL 289 (452)
T ss_dssp CTTC--TTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTC
T ss_pred cccc--ccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccc
Confidence 3456 78888888888887 112245667777 8888888888866543 367788888888888886654 4566777
Q ss_pred ccccccccccccCc
Q psy9363 396 PNLKYLNLASTNLR 409 (421)
Q Consensus 396 ~~L~~L~Ls~N~l~ 409 (421)
++|+.|+|++|++.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 88888888888753
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=7.6e-17 Score=155.30 Aligned_cols=99 Identities=13% Similarity=-0.039 Sum_probs=73.7
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L 99 (421)
+++.++++++.++.++ ..+ .++|+.|+| +|+++. ..+..++.+++|++|+|++|.+.+..+.. +..+++|
T Consensus 32 ~l~~l~~~~~~l~~lp---~~~--~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP---KDL--PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGA---FAPLVKL 102 (330)
T ss_dssp ETTEEECTTSCCCSCC---CSC--CTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCTTC
T ss_pred CCeEEEecCCCccccC---ccC--CCCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHH---hcCCCCC
Confidence 7999999999998653 211 378999999 588883 34445778999999999888775543333 6779999
Q ss_pred ceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 100 SSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 100 ~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
++|++++|.+.... . .+ .++|+.|+++..
T Consensus 103 ~~L~Ls~n~l~~l~--~-----~~--~~~L~~L~l~~n 131 (330)
T 1xku_A 103 ERLYLSKNQLKELP--E-----KM--PKTLQELRVHEN 131 (330)
T ss_dssp CEEECCSSCCSBCC--S-----SC--CTTCCEEECCSS
T ss_pred CEEECCCCcCCccC--h-----hh--cccccEEECCCC
Confidence 99999999986432 1 11 268888888653
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=6.2e-18 Score=174.85 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
.++|++|||++|.|+.. .+..++.+++|++|+| +|+++. ..|..++.+++|++|+|++|.+. .++.. .++
T Consensus 51 ~~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-----~l~ 121 (562)
T 3a79_B 51 PPRTKALSLSQNSISEL--RMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ-NISCC-----PMA 121 (562)
T ss_dssp CTTCCEEECCSSCCCCC--CGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC-EECSC-----CCT
T ss_pred CCCcCEEECCCCCcccc--ChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC-ccCcc-----ccc
Confidence 37899999999999854 2456788999999999 588883 44566678899999999888774 33322 589
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
+|++|++++|.+.... .+..++.+++|++|+++.
T Consensus 122 ~L~~L~Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLP-----VCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp TCSEEECCSSCCSBCC-----CCGGGGGCTTCCEEEEEC
T ss_pred cCCEEECCCCCccccC-----chHhhcccCcccEEecCC
Confidence 9999999999985422 235688999999999875
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=166.01 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=66.4
Q ss_pred hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363 318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSL 395 (421)
Q Consensus 318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 395 (421)
+..+ ++|+.|+|++|.|+ ...+..+..+++ +.|+|++|+|+.+++. +..+++|+.|+|++|+|+.++ ...+..+
T Consensus 203 ~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l 278 (440)
T 3zyj_A 203 LTPL--IKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPL 278 (440)
T ss_dssp CTTC--SSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTTTSSC
T ss_pred cCCC--cccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhHhccc
Confidence 4566 88888888888887 111245667788 8888888888876654 377888888888888887665 5567788
Q ss_pred ccccccccccccC
Q psy9363 396 PNLKYLNLASTNL 408 (421)
Q Consensus 396 ~~L~~L~Ls~N~l 408 (421)
++|+.|+|++|++
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 8888888888886
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.1e-17 Score=159.35 Aligned_cols=107 Identities=18% Similarity=0.113 Sum_probs=78.4
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCC-CCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSS-SAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL 96 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~-~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l 96 (421)
.++|++|+|++|.|+..+ +..++++++|++|+| +|++... ..+.....+++|++|+|++|.+..-+.. +..+
T Consensus 27 ~~~l~~L~L~~n~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~----~~~l 100 (306)
T 2z66_A 27 PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGL 100 (306)
T ss_dssp CTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE----EETC
T ss_pred CCCCCEEECCCCccCccC--HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh----cCCC
Confidence 368999999999998543 234678999999999 5888731 1234445678999999988866432222 5679
Q ss_pred CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
++|++|++++|.+.... ....+..+++|++|+++.
T Consensus 101 ~~L~~L~l~~n~l~~~~-----~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMS-----EFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp TTCCEEECTTSEEESST-----TTTTTTTCTTCCEEECTT
T ss_pred CCCCEEECCCCcccccc-----cchhhhhccCCCEEECCC
Confidence 99999999999985432 113577888899888863
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=3.7e-17 Score=157.74 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=63.7
Q ss_pred ChhHHhhhCC-----CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCc
Q psy9363 11 THDEIEQAVP-----FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDE 84 (421)
Q Consensus 11 ~~~~~~~~~~-----~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~ 84 (421)
.|..+...|| +++.+++++|.++.+ |..+ .++|++|+| +|++.. ..|..++.+++|++|+|++|.+.+
T Consensus 19 lp~~~~~~cp~~c~c~l~~l~~~~~~l~~i---p~~~--~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~ 92 (332)
T 2ft3_A 19 LPPTYSAMCPFGCHCHLRVVQCSDLGLKAV---PKEI--SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISK 92 (332)
T ss_dssp ------CCCCSSCEEETTEEECCSSCCSSC---CSCC--CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcccCCCCCCCcccCCEEECCCCCcccc---CCCC--CCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCc
Confidence 3444445554 688888888887744 3222 367888888 477763 334456677788888887766644
Q ss_pred chhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 85 DFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 85 ~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
..+.. +..+++|++|++++|.+..... .+. ++|+.|+++.
T Consensus 93 ~~~~~---~~~l~~L~~L~L~~n~l~~l~~-------~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 93 IHEKA---FSPLRKLQKLYISKNHLVEIPP-------NLP--SSLVELRIHD 132 (332)
T ss_dssp ECGGG---STTCTTCCEEECCSSCCCSCCS-------SCC--TTCCEEECCS
T ss_pred cCHhH---hhCcCCCCEEECCCCcCCccCc-------ccc--ccCCEEECCC
Confidence 32322 5667888888888887753321 111 5677777653
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=1.1e-16 Score=154.38 Aligned_cols=104 Identities=16% Similarity=0.058 Sum_probs=81.5
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
.++|++|+|++|.|+.. .+..+..+++|++|+| +|+++ ...|..++.+++|++|+|++|.+..-+..+ ++
T Consensus 53 ~~~l~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~------~~ 123 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISEL--RKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL------PS 123 (332)
T ss_dssp CTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC------CT
T ss_pred CCCCeEEECCCCcCCcc--CHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc------cc
Confidence 46899999999999843 2456788999999999 58888 345666788999999999888774322222 48
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
+|++|++++|.+... .+..++.+++|+.|+.+..
T Consensus 124 ~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 124 SLVELRIHDNRIRKV------PKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp TCCEEECCSSCCCCC------CSGGGSSCSSCCEEECCSC
T ss_pred cCCEEECCCCccCcc------CHhHhCCCccCCEEECCCC
Confidence 999999999998543 2445788999999998753
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=9e-17 Score=151.53 Aligned_cols=83 Identities=24% Similarity=0.300 Sum_probs=42.2
Q ss_pred CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCccc-CCCCCCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363 324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 400 (421)
++|+.|+|++|.++ .+. ..+..+++ ++|+|++|.++.+ |..+..+++|+.|++++|.++..+ +..+..+++|+.
T Consensus 153 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 229 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQY 229 (285)
T ss_dssp TTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCE
T ss_pred CCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCE
Confidence 55555555555555 111 22344455 5555555555544 223345555555555555554433 234555555555
Q ss_pred cccccccCc
Q psy9363 401 LNLASTNLR 409 (421)
Q Consensus 401 L~Ls~N~l~ 409 (421)
|++++|++.
T Consensus 230 L~l~~N~~~ 238 (285)
T 1ozn_A 230 LRLNDNPWV 238 (285)
T ss_dssp EECCSSCEE
T ss_pred EeccCCCcc
Confidence 555555553
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=6.1e-17 Score=155.10 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=153.8
Q ss_pred CCCceeec-ccccCCC--CCCcccccccccchhccc-cccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHH
Q psy9363 46 KHLRHLNL-RIRLKSS--SAPAHSYLAEVVFFVHLG-RTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREK 121 (421)
Q Consensus 46 ~~L~~L~L-~N~l~~~--~~p~~~~~~~~L~~L~L~-~~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 121 (421)
.+++.|+| +|.+. + .+|..++.+++|++|+|+ +|.+.+.++.. +..+++|++|+|++|.+. +..+.
T Consensus 50 ~~l~~L~L~~~~l~-~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~------~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP-KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHTNVS------GAIPD 119 (313)
T ss_dssp CCEEEEEEECCCCS-SCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEECCE------EECCG
T ss_pred ceEEEEECCCCCcc-CCcccChhHhCCCCCCeeeCCCCCcccccCChh---HhcCCCCCEEECcCCeeC------CcCCH
Confidence 58999999 58888 5 678888999999999998 36554554443 678999999999999984 23455
Q ss_pred HHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCcccccccCCCCceEEeecCceeEEEE
Q psy9363 122 TIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRY 201 (421)
Q Consensus 122 ~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~i~~rv~~l~~~~~~~r~ 201 (421)
.++.+++|++||++..... +..+ ..+.. .. .+..+ +++.+++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~-------------~~~p------------------~~~~~----l~-~L~~L--~L~~N~l 161 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALS-------------GTLP------------------PSISS----LP-NLVGI--TFDGNRI 161 (313)
T ss_dssp GGGGCTTCCEEECCSSEEE-------------SCCC------------------GGGGG----CT-TCCEE--ECCSSCC
T ss_pred HHhCCCCCCEEeCCCCccC-------------CcCC------------------hHHhc----CC-CCCeE--ECcCCcc
Confidence 7889999999988632111 0000 00000 00 00000 1111111
Q ss_pred ecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhHHHhhhhhccccchhhhcccccee
Q psy9363 202 VGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEV 281 (421)
Q Consensus 202 ~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~ 281 (421)
.|.+|...+
T Consensus 162 ~~~~p~~l~----------------------------------------------------------------------- 170 (313)
T 1ogq_A 162 SGAIPDSYG----------------------------------------------------------------------- 170 (313)
T ss_dssp EEECCGGGG-----------------------------------------------------------------------
T ss_pred cCcCCHHHh-----------------------------------------------------------------------
Confidence 111111000
Q ss_pred eeeecCceeEeecccchhhhh-CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEc
Q psy9363 282 KASINAPFLELVGFDQVHEEQ-NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKL 355 (421)
Q Consensus 282 ~~~~~~~~~e~~g~~~l~~~~-~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L 355 (421)
... .|+.+.+++ +.+|..+..+ + |+.|+|++|.++ ..++..+..+++ +.|+|
T Consensus 171 ------------------~l~~~L~~L~L~~N~l~~~~~~~~~~l--~-L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 171 ------------------SFSKLFTSMTISRNRLTGKIPPTFANL--N-LAFVDLSRNMLE-GDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp ------------------CCCTTCCEEECCSSEEEEECCGGGGGC--C-CSEEECCSSEEE-ECCGGGCCTTSCCSEEEC
T ss_pred ------------------hhhhcCcEEECcCCeeeccCChHHhCC--c-ccEEECcCCccc-CcCCHHHhcCCCCCEEEC
Confidence 000 222233322 4567788888 6 999999999998 334466788899 99999
Q ss_pred cCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCCCCC
Q psy9363 356 PSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKE 416 (421)
Q Consensus 356 ~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p~~ 416 (421)
++|.++..++.+..+++|++|+|++|+++.. .+..+..+++|+.|+|++|++++ .+|..
T Consensus 229 ~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~ 287 (313)
T 1ogq_A 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCG-EIPQG 287 (313)
T ss_dssp CSSEECCBGGGCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEE-ECCCS
T ss_pred CCCceeeecCcccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCcccc-cCCCC
Confidence 9999996555578889999999999999533 36689999999999999999997 45554
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=4e-18 Score=163.19 Aligned_cols=87 Identities=14% Similarity=0.054 Sum_probs=70.8
Q ss_pred hhhcCCCCCccEEEeeCcccchhhHH-HHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYIWADIL-KLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGS 394 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~-~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 394 (421)
.+..+ ++|+.|+|++|.++ ..++ ..+..+++ ++|+|++|+|+.+|..+. ++|+.|+|++|+|+..+ .+..
T Consensus 223 ~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p---~~~~ 294 (312)
T 1wwl_A 223 LAAAR--VQLQGLDLSHNSLR-DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP---SPDE 294 (312)
T ss_dssp HHHTT--CCCSEEECTTSCCC-SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC---CTTT
T ss_pred HHhcC--CCCCEEECCCCcCC-cccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh---hHhh
Confidence 45678 99999999999998 2111 23445678 999999999999887554 89999999999998763 2888
Q ss_pred cccccccccccccCccc
Q psy9363 395 LPNLKYLNLASTNLRNI 411 (421)
Q Consensus 395 l~~L~~L~Ls~N~l~~i 411 (421)
+++|++|++++|++++.
T Consensus 295 l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCEEEEEECTTCTTTCC
T ss_pred CCCCCEEeccCCCCCCC
Confidence 99999999999999873
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=5.7e-16 Score=156.47 Aligned_cols=278 Identities=15% Similarity=0.177 Sum_probs=153.0
Q ss_pred hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363 16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH 94 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~ 94 (421)
...+++|++|+|++|.+++... ++++++|++|+| +|.+.. ++. ++.+++|++|+|++|.+..- .. +.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~-~~----~~ 153 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITD--IDP-LKNLTNLNRLELSSNTISDI-SA----LS 153 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECCC-GG----GT
T ss_pred hhccccCCEEECCCCccccChh----hcCCCCCCEEECCCCCCCC--ChH-HcCCCCCCEEECCCCccCCC-hh----hc
Confidence 4468899999999999986543 788999999999 588873 333 67889999999987766432 22 56
Q ss_pred hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363 95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG 174 (421)
Q Consensus 95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (421)
.+++|++|++. |.+... . .++.+++|+.|+.+....... . .+... +..
T Consensus 154 ~l~~L~~L~l~-~~~~~~------~--~~~~l~~L~~L~l~~n~l~~~--~------~l~~l--------------~~L- 201 (466)
T 1o6v_A 154 GLTSLQQLSFG-NQVTDL------K--PLANLTTLERLDISSNKVSDI--S------VLAKL--------------TNL- 201 (466)
T ss_dssp TCTTCSEEEEE-ESCCCC------G--GGTTCTTCCEEECCSSCCCCC--G------GGGGC--------------TTC-
T ss_pred cCCcccEeecC-CcccCc------h--hhccCCCCCEEECcCCcCCCC--h------hhccC--------------CCC-
Confidence 68888888886 333221 1 267777888887764332110 0 00000 000
Q ss_pred CcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363 175 DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG 254 (421)
Q Consensus 175 ~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g 254 (421)
..+. ++.+++.+..| .+.+..++..++..++.. .+ +
T Consensus 202 ------------~~L~-----l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~~--~ 237 (466)
T 1o6v_A 202 ------------ESLI-----ATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------DI--G 237 (466)
T ss_dssp ------------SEEE-----CCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------CC--G
T ss_pred ------------CEEE-----ecCCccccccc--ccccCCCCEEECCCCCcc-----------------------cc--h
Confidence 0000 11111111111 011111111111100000 00 0
Q ss_pred chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCCccEEEe
Q psy9363 255 SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGHIHTLTL 331 (421)
Q Consensus 255 ~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~L~~L~L 331 (421)
.+ ........+.++...+.... .+....+|+.+.+++ ..++. +..+ ++|+.|+|
T Consensus 238 -~l-----------------~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~l--~~L~~L~L 294 (466)
T 1o6v_A 238 -TL-----------------ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP-LAGL--TALTNLEL 294 (466)
T ss_dssp -GG-----------------GGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG-GTTC--TTCSEEEC
T ss_pred -hh-----------------hcCCCCCEEECCCCccccch--hhhcCCCCCEEECCCCccCcccc-ccCC--CccCeEEc
Confidence 00 01111222333332222111 122222566666665 22333 6667 78888888
Q ss_pred eCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 332 GNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 332 s~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
++|.++ ... +..+++ +.|+|++|+++++++ +..+++|+.|++++|.++.. ..++.+++|+.|++++|+++
T Consensus 295 ~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 295 NENQLEDISP----ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCC
T ss_pred CCCcccCchh----hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccC
Confidence 888877 321 556777 888888888877654 56777888888888887653 35677788888888888877
Q ss_pred ccC
Q psy9363 410 NIK 412 (421)
Q Consensus 410 ~i~ 412 (421)
++.
T Consensus 367 ~~~ 369 (466)
T 1o6v_A 367 DLT 369 (466)
T ss_dssp BCG
T ss_pred ccc
Confidence 654
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.67 E-value=2.6e-17 Score=158.74 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=68.3
Q ss_pred CchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcccc
Q psy9363 314 SGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEVNA 391 (421)
Q Consensus 314 ~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 391 (421)
+|..+..+ ++|++|+|++|.+. +.++..+..+++ +.|+|++|.+. .+|..+..+++|+.|+|++|.+ ....+..
T Consensus 221 l~~~l~~l--~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~ 296 (328)
T 4fcg_A 221 LGPAIHHL--PKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSL 296 (328)
T ss_dssp CCGGGGGC--TTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGG
T ss_pred CchhhccC--CCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHH
Confidence 45557777 88888888888776 334455667777 88888887665 5666667788888888888877 3344667
Q ss_pred cCccccccccccccccCccc
Q psy9363 392 LGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 392 l~~l~~L~~L~Ls~N~l~~i 411 (421)
++.+++|+.++++.|.+..+
T Consensus 297 l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp GGGSCTTCEEECCGGGSCC-
T ss_pred HhhccCceEEeCCHHHHHHH
Confidence 88888888888887777654
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=2.6e-16 Score=147.68 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=63.1
Q ss_pred chhhhcCCCCCccEEEeeCcccc-hh-hHHHHhccCCC-c-EEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363 315 GVMEQIFPQGHIHTLTLGNMGYI-WA-DILKLLANFPV-T-CLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 315 ~~~~~~l~~~~L~~L~Ls~N~l~-~~-~i~~~~~~l~~-~-~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 390 (421)
|..+..+ ++|+.|+|++|.++ .. .....+..++. . .|++++|.++.++.......+|+.|+|++|+++.++ ..
T Consensus 142 ~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~ 218 (276)
T 2z62_A 142 PEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DG 218 (276)
T ss_dssp CGGGGGC--TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TT
T ss_pred chhhccC--CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC-Hh
Confidence 4455667 78888888888877 21 11122233333 2 788888888877765555557888888888887654 44
Q ss_pred ccCccccccccccccccCcc
Q psy9363 391 ALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N~l~~ 410 (421)
.++.+++|+.|++++|+++.
T Consensus 219 ~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTTTCCSCCEEECCSSCBCC
T ss_pred HhcccccccEEEccCCcccc
Confidence 56778888888888888864
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=4.7e-17 Score=158.31 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=66.4
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
++|++|+|++|.|+..+ +..+.++++|++|+| +|++.. ..|..++.+++|++|+|++|.++.-+... +..+++
T Consensus 52 ~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSW---FKPLSS 125 (353)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHH---HTTCTT
T ss_pred ccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhH---hCCCcc
Confidence 47777788777777432 224567777777777 477763 33444566777777777766664433322 556777
Q ss_pred CceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
|++|++++|++..... ...++.+++|++|+++.
T Consensus 126 L~~L~L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGE-----TSLFSHLTKLQILRVGN 158 (353)
T ss_dssp CSEEECTTCCCSSSCS-----SCSCTTCTTCCEEEEEE
T ss_pred CCEEECCCCCCcccCc-----hhhhccCCCCcEEECCC
Confidence 7788887777743220 02456677777777653
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=3.5e-17 Score=156.97 Aligned_cols=244 Identities=16% Similarity=0.140 Sum_probs=151.8
Q ss_pred hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHH
Q psy9363 12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEG 90 (421)
Q Consensus 12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~ 90 (421)
+..+...+++|++|||++|.|++. .+..++.+++|++|+| +|++.+ ..+ ++.+++|++|+|++|.+++
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~n~l~~------ 94 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQE------ 94 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCC--CHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEECCSSEEEE------
T ss_pred HHHHhccCCCCCEEECcCCccCcC--CHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEECcCCcccc------
Confidence 345666777899999999999853 4567788999999999 588873 222 5677889999998776633
Q ss_pred HHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhC
Q psy9363 91 SLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEAN 170 (421)
Q Consensus 91 ~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~ 170 (421)
+..+++|++|++++|.+.... ...+++|+.|+++....
T Consensus 95 --l~~~~~L~~L~l~~n~l~~~~---------~~~~~~L~~L~l~~N~l------------------------------- 132 (317)
T 3o53_A 95 --LLVGPSIETLHAANNNISRVS---------CSRGQGKKNIYLANNKI------------------------------- 132 (317)
T ss_dssp --EEECTTCCEEECCSSCCSEEE---------ECCCSSCEEEECCSSCC-------------------------------
T ss_pred --ccCCCCcCEEECCCCccCCcC---------ccccCCCCEEECCCCCC-------------------------------
Confidence 223688999999999885432 12356777777653211
Q ss_pred CCCCCcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCc
Q psy9363 171 PRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDK 250 (421)
Q Consensus 171 ~~~~~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~ 250 (421)
.+. .+...+....++..++..++.
T Consensus 133 --------~~~-----------------------~~~~~~~l~~L~~L~Ls~N~l------------------------- 156 (317)
T 3o53_A 133 --------TML-----------------------RDLDEGCRSRVQYLDLKLNEI------------------------- 156 (317)
T ss_dssp --------CSG-----------------------GGBCTGGGSSEEEEECTTSCC-------------------------
T ss_pred --------CCc-----------------------cchhhhccCCCCEEECCCCCC-------------------------
Confidence 100 000000011122222221110
Q ss_pred cccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhh-hCCCccCCCC---CCCchhhhcCCCCCc
Q psy9363 251 LNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEE-QNTNKLPIPN---DTSGVMEQIFPQGHI 326 (421)
Q Consensus 251 l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~-~~L~~l~l~~---~~~~~~~~~l~~~~L 326 (421)
..+....+... .+|+.+++++ ..++.. ..+ ++|
T Consensus 157 ----------------------------------------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l--~~L 193 (317)
T 3o53_A 157 ----------------------------------------DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVF--AKL 193 (317)
T ss_dssp ----------------------------------------CEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCC--TTC
T ss_pred ----------------------------------------CcccHHHHhhccCcCCEEECCCCcCcccccc-ccc--ccC
Confidence 00000111000 1333333333 111211 236 899
Q ss_pred cEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccc
Q psy9363 327 HTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA 404 (421)
Q Consensus 327 ~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls 404 (421)
++|+|++|.++ .+ ..+..+++ +.|+|++|+|+.+|..+..+++|+.|+|++|.+.....+..+..++.|+.|+++
T Consensus 194 ~~L~Ls~N~l~~l~---~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 194 KTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEEECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CEEECCCCcCCcch---hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 99999999998 32 23667788 999999999999988778889999999999999633335677889999999998
Q ss_pred cc-cCcc
Q psy9363 405 ST-NLRN 410 (421)
Q Consensus 405 ~N-~l~~ 410 (421)
+| .+++
T Consensus 271 ~~~~l~~ 277 (317)
T 3o53_A 271 TVKKLTG 277 (317)
T ss_dssp HHHHHHS
T ss_pred CchhccC
Confidence 43 3443
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=9.2e-17 Score=161.97 Aligned_cols=325 Identities=11% Similarity=0.022 Sum_probs=169.0
Q ss_pred hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHH
Q psy9363 12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEG 90 (421)
Q Consensus 12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~ 90 (421)
+..+. .+++|++|||++|.|++. + .++.+++|++|+| +|++++ +| ++.+++|++|+|++|.+.+. +
T Consensus 35 ~~~~~-~l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--- 101 (457)
T 3bz5_A 35 TISEE-QLATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--- 101 (457)
T ss_dssp EEEHH-HHTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C---
T ss_pred ccChh-HcCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e---
Confidence 33444 468899999999998864 3 3677899999999 588884 33 56778899999987776543 2
Q ss_pred HHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhC
Q psy9363 91 SLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEAN 170 (421)
Q Consensus 91 ~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~ 170 (421)
++.+++|++|++++|.+... .++.+++|+.|+.+...-.... +..+..+...
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l---------~~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L-------------- 153 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL---------DVSQNPLLTYLNCARNTLTEID---VSHNTQLTEL-------------- 153 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC---------CCTTCTTCCEEECTTSCCSCCC---CTTCTTCCEE--------------
T ss_pred --cCCCCcCCEEECCCCcCCee---------cCCCCCcCCEEECCCCccceec---cccCCcCCEE--------------
Confidence 55688888888888887432 1677888888887653322110 0000000000
Q ss_pred CCCCCccccccc-CCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecC
Q psy9363 171 PRVGDNYFQVME-DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD 249 (421)
Q Consensus 171 ~~~~~n~~~~~~-~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~ 249 (421)
....|...+.. +.....+..+ +++.+++.+ +| .+....++..++..++..+. . +.. +.+++
T Consensus 154 -~l~~n~~~~~~~~~~l~~L~~L--~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~-l~~-------l~~L~ 215 (457)
T 3bz5_A 154 -DCHLNKKITKLDVTPQTQLTTL--DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----D-LNQ-------NIQLT 215 (457)
T ss_dssp -ECTTCSCCCCCCCTTCTTCCEE--ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----C-CTT-------CTTCS
T ss_pred -ECCCCCcccccccccCCcCCEE--ECCCCccce-ec--cccCCCCCEEECcCCcCCee----c-ccc-------CCCCC
Confidence 01112111110 0000111101 122222222 22 11111122222221211110 0 000 00111
Q ss_pred ccccC-chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhh-------CCCccCCCC----CCCchh
Q psy9363 250 KLNFG-SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ-------NTNKLPIPN----DTSGVM 317 (421)
Q Consensus 250 ~l~~g-~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~-------~L~~l~l~~----~~~~~~ 317 (421)
.+... ..+.. +. +........+.++.+.+.......+.... +|+.+++++ +.+|
T Consensus 216 ~L~Ls~N~l~~-ip-----------~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 216 FLDCSSNKLTE-ID-----------VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp EEECCSSCCSC-CC-----------CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred EEECcCCcccc-cC-----------ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 11100 00000 00 01112233334444333332222221111 455556554 2333
Q ss_pred hhcCCCCCccEEEeeCcccchhhHHH--------HhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCc
Q psy9363 318 EQIFPQGHIHTLTLGNMGYIWADILK--------LLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGE 388 (421)
Q Consensus 318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~--------~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 388 (421)
...+ ++|+.|+|++|.+. +.++. .+...++ ++|+|++|+|++++ +..+++|+.|++++|+|++++.
T Consensus 282 ~~~l--~~L~~L~Ls~n~~l-~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~ 356 (457)
T 3bz5_A 282 AEGC--RKIKELDVTHNTQL-YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS 356 (457)
T ss_dssp CTTC--TTCCCCCCTTCTTC-CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTT
T ss_pred cccc--ccCCEEECCCCccc-ceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccc
Confidence 4577 89999999999753 11110 1345577 99999999999984 7889999999999999987553
Q ss_pred cccc----------CccccccccccccccCcccCCCC
Q psy9363 389 VNAL----------GSLPNLKYLNLASTNLRNIKLNK 415 (421)
Q Consensus 389 ~~~l----------~~l~~L~~L~Ls~N~l~~i~~p~ 415 (421)
...+ +.+..|..+++++|++++ .+|.
T Consensus 357 L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g-~ip~ 392 (457)
T 3bz5_A 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTI-AVSP 392 (457)
T ss_dssp GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEE-ECCT
T ss_pred cccccccCCcEEecceeeecCccccccCcEEE-EcCh
Confidence 3222 234578899999999997 5554
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=2.4e-15 Score=151.59 Aligned_cols=78 Identities=15% Similarity=0.015 Sum_probs=63.4
Q ss_pred HhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHH
Q psy9363 42 TCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSRE 120 (421)
Q Consensus 42 ~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~ 120 (421)
++++++|++|++ +|.+.+ +| .++.+++|++|+|++|.+++- + +..+++|++|++++|.+...
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~-----~~~l~~L~~L~Ls~N~l~~~-------- 100 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D-----LSQNTNLTYLACDSNKLTNL-------- 100 (457)
T ss_dssp HHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C-----CTTCTTCSEEECCSSCCSCC--------
T ss_pred hhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c-----cccCCCCCEEECcCCCCcee--------
Confidence 456899999999 588884 45 467899999999988877553 2 56799999999999998543
Q ss_pred HHHHhccCceeccCCcc
Q psy9363 121 KTIARLGGLKLLNGSAI 137 (421)
Q Consensus 121 ~~i~~l~~L~~ln~s~i 137 (421)
.++.+++|++|+++..
T Consensus 101 -~~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 101 -DVTPLTKLTYLNCDTN 116 (457)
T ss_dssp -CCTTCTTCCEEECCSS
T ss_pred -ecCCCCcCCEEECCCC
Confidence 1789999999999754
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=7.6e-17 Score=154.27 Aligned_cols=87 Identities=22% Similarity=0.182 Sum_probs=71.6
Q ss_pred hcCCCCCccEEEeeCcccc-hhhHH-HHhccCCC-cEEEccCCcCcccCC--CCCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 319 QIFPQGHIHTLTLGNMGYI-WADIL-KLLANFPV-TCLKLPSNRITTLDS--VPGMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 319 ~~l~~~~L~~L~Ls~N~l~-~~~i~-~~~~~l~~-~~L~L~~N~l~~l~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
..+ ++|++|+|++|.|+ .+.++ .....+++ ++|+|++|+|+++++ ....+++|+.|+|++|+|+.++ ..+.
T Consensus 198 ~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~~~ 273 (312)
T 1wwl_A 198 LKF--PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP--KGLP 273 (312)
T ss_dssp TSC--TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC--SSCC
T ss_pred ccC--CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh--hhcc
Confidence 577 99999999999998 54444 44567789 999999999997652 2366899999999999998643 3444
Q ss_pred ccccccccccccccCccc
Q psy9363 394 SLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 394 ~l~~L~~L~Ls~N~l~~i 411 (421)
++|+.|+|++|+|+++
T Consensus 274 --~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp --SEEEEEECCSSCCCSC
T ss_pred --CCceEEECCCCCCCCC
Confidence 8999999999999987
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=3e-15 Score=142.97 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=64.2
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
+++|++|++++|.+++++. +..+++|++|+| .|.+.. ++. ++.+++|++|+|++|.+.+- + . +..++
T Consensus 40 l~~L~~L~l~~~~i~~l~~----~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~-~---~-~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG----VQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNV-S---A-IAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCC-G---G-GTTCT
T ss_pred cCCcCEEEeeCCCccCchh----hhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCc-h---h-hcCCC
Confidence 5678888888888876542 566788888888 477763 333 56777788888877666432 2 1 56678
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
+|++|++++|.+.... .++.+++|+.|+++
T Consensus 108 ~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVT--------PLAGLSNLQVLYLD 137 (308)
T ss_dssp TCCEEECTTSCCCCCG--------GGTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCCch--------hhcCCCCCCEEECC
Confidence 8888888888774321 25666666666554
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.9e-16 Score=159.61 Aligned_cols=95 Identities=21% Similarity=0.128 Sum_probs=68.3
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
+++|++|+|++|.|++. .+..++.+++|++|+| +|.+++ ..| ++.+++|++|+|++|.+++- ...+
T Consensus 33 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l--------~~~~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI--SAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQEL--------LVGP 99 (487)
T ss_dssp GGGCCEEECCSSCCCCC--CGGGGTTCTTCCEEECTTSCCEE-EEE--CTTCTTCCEEECCSSEEEEE--------EECT
T ss_pred CCCccEEEeeCCcCCCC--CHHHHhCCCCCCEEEeeCCCCCC-Ccc--cccCCCCCEEEecCCcCCCC--------CCCC
Confidence 34899999999999853 3456788999999999 588873 333 66788899999987766432 2358
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
+|++|++++|.+.... ...+++|+.|+++
T Consensus 100 ~L~~L~L~~N~l~~~~---------~~~l~~L~~L~L~ 128 (487)
T 3oja_A 100 SIETLHAANNNISRVS---------CSRGQGKKNIYLA 128 (487)
T ss_dssp TCCEEECCSSCCCCEE---------ECCCSSCEEEECC
T ss_pred CcCEEECcCCcCCCCC---------ccccCCCCEEECC
Confidence 8999999999885432 1235677777765
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=3.8e-16 Score=148.67 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=77.2
Q ss_pred CchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccc
Q psy9363 314 SGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNA 391 (421)
Q Consensus 314 ~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 391 (421)
.|..+..+ ++|+.|+|++|.++ ...+..+..+++ ++|+|++|+++.++.. +..+++|+.|+|++|.+.... +..
T Consensus 167 ~~~~~~~l--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~ 242 (306)
T 2z66_A 167 LPDIFTEL--RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQE 242 (306)
T ss_dssp ECSCCTTC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SSS
T ss_pred chhHHhhC--cCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HHH
Confidence 45667788 99999999999998 222355677889 9999999999988763 478999999999999996654 567
Q ss_pred cCccc-cccccccccccCcc
Q psy9363 392 LGSLP-NLKYLNLASTNLRN 410 (421)
Q Consensus 392 l~~l~-~L~~L~Ls~N~l~~ 410 (421)
+..++ +|+.|+|++|+++.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCCCTTCCEEECTTCCEEC
T ss_pred HHhhhccCCEEEccCCCeec
Confidence 88885 99999999999974
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=5.6e-15 Score=138.23 Aligned_cols=100 Identities=17% Similarity=0.042 Sum_probs=69.8
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L 99 (421)
.++++++++|.++.++ ..+ .++|++|+| +|++.. ..+..++.+++|++|+|++|.+..-+..+ +..+++|
T Consensus 17 ~~~~l~~~~~~l~~ip---~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~---~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP---SNI--PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGI---FKELKNL 87 (270)
T ss_dssp TTTEEECTTSCCSSCC---SCC--CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTT---TSSCTTC
T ss_pred CCCEEEccCCCCCccC---CCC--CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhh---hcCCCCC
Confidence 5789999999998643 211 257999999 588883 33445677889999999877665433333 5678999
Q ss_pred ceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 100 SSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 100 ~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
++|++++|.+.... +..++.+++|+.|+++
T Consensus 88 ~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 88 ETLWVTDNKLQALP------IGVFDQLVNLAELRLD 117 (270)
T ss_dssp CEEECCSSCCCCCC------TTTTTTCSSCCEEECC
T ss_pred CEEECCCCcCCcCC------HhHcccccCCCEEECC
Confidence 99999999874332 2345566666666654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=6.6e-16 Score=148.08 Aligned_cols=233 Identities=15% Similarity=0.060 Sum_probs=155.1
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
..++.++++.+.+. ..+......+++|++|+| +|++. ...|..++.+++|++|+|++|.+.+.++ +..+++
T Consensus 10 ~~l~i~~ls~~~l~--~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~ 81 (317)
T 3o53_A 10 NRYKIEKVTDSSLK--QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-----LESLST 81 (317)
T ss_dssp TEEEEESCCTTTHH--HHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-----ETTCTT
T ss_pred CceeEeeccccchh--hhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-----hhhcCC
Confidence 35778888888886 445566677889999999 58888 3445567788999999998887754433 667999
Q ss_pred CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCccc
Q psy9363 99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYF 178 (421)
Q Consensus 99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 178 (421)
|++|++++|.+... ...++|+.|+++. |.+
T Consensus 82 L~~L~Ls~n~l~~l-----------~~~~~L~~L~l~~---------------------------------------n~l 111 (317)
T 3o53_A 82 LRTLDLNNNYVQEL-----------LVGPSIETLHAAN---------------------------------------NNI 111 (317)
T ss_dssp CCEEECCSSEEEEE-----------EECTTCCEEECCS---------------------------------------SCC
T ss_pred CCEEECcCCccccc-----------cCCCCcCEEECCC---------------------------------------Ccc
Confidence 99999999997432 1336777777652 211
Q ss_pred ccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhH
Q psy9363 179 QVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFM 258 (421)
Q Consensus 179 ~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~ 258 (421)
.+. . .+..+ .++..++..++.. .+
T Consensus 112 ~~~--------~-----------~~~~~-------~L~~L~l~~N~l~-----------------------~~------- 135 (317)
T 3o53_A 112 SRV--------S-----------CSRGQ-------GKKNIYLANNKIT-----------------------ML------- 135 (317)
T ss_dssp SEE--------E-----------ECCCS-------SCEEEECCSSCCC-----------------------SG-------
T ss_pred CCc--------C-----------ccccC-------CCCEEECCCCCCC-----------------------Cc-------
Confidence 100 0 00000 0122222211100 00
Q ss_pred HHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC----CCCchhh-hcCCCCCccEEEeeC
Q psy9363 259 EALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVME-QIFPQGHIHTLTLGN 333 (421)
Q Consensus 259 ~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~-~~l~~~~L~~L~Ls~ 333 (421)
....+....+|+.+++++ +..+..+ ..+ ++|++|+|++
T Consensus 136 -----------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L~L~~ 178 (317)
T 3o53_A 136 -----------------------------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS--DTLEHLNLQY 178 (317)
T ss_dssp -----------------------------------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT--TTCCEEECTT
T ss_pred -----------------------------------cchhhhccCCCCEEECCCCCCCcccHHHHhhcc--CcCCEEECCC
Confidence 000000011444555554 2233333 578 9999999999
Q ss_pred cccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 334 MGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 334 N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
|.++ ++. ...+++ ++|+|++|+|+.+++.+..+++|+.|+|++|+|+.+ +..+..+++|+.|++++|+++
T Consensus 179 N~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 179 NFIYDVKG----QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCEEEC----CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCCB
T ss_pred CcCccccc----ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch--hhHhhcCCCCCEEEccCCCcc
Confidence 9998 321 224778 999999999999987778899999999999999764 446888999999999999997
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=4.9e-15 Score=142.79 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=80.4
Q ss_pred CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363 313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 390 (421)
.+|..+..+ ++|++|+|++|.++ .++..+..+++ ++|+|++|.+. .+|..+..+++|+.|+|++|.+.. ..+.
T Consensus 197 ~lp~~l~~l--~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~ 271 (328)
T 4fcg_A 197 SLPASIANL--QNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPL 271 (328)
T ss_dssp CCCGGGGGC--TTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCT
T ss_pred cchHhhcCC--CCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcch
Confidence 456678899 99999999999998 12235778899 99999998887 566667899999999999998843 3466
Q ss_pred ccCccccccccccccccCcccCCCC
Q psy9363 391 ALGSLPNLKYLNLASTNLRNIKLNK 415 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N~l~~i~~p~ 415 (421)
.++.+++|+.|+|++|++.+ .+|+
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~-~iP~ 295 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLS-RLPS 295 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCC-CCCG
T ss_pred hhhcCCCCCEEeCCCCCchh-hccH
Confidence 78999999999999999887 5564
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=2.7e-15 Score=151.10 Aligned_cols=99 Identities=21% Similarity=0.240 Sum_probs=58.5
Q ss_pred CCCccCCCCCCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCC
Q psy9363 303 NTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQEN 381 (421)
Q Consensus 303 ~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N 381 (421)
+|+.+++++..+.. +..++ ++|+.|++++|.++ + +...+++ ++|++++|+++.+|. .+++|+.|++++|
T Consensus 298 ~L~~L~l~~N~l~~-i~~~~-~~L~~L~Ls~N~l~-~----lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 298 NLYYLNASSNEIRS-LCDLP-PSLEELNVSNNKLI-E----LPALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp TCCEEECCSSCCSE-ECCCC-TTCCEEECCSSCCS-C----CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred cCCEEECcCCcCCc-ccCCc-CcCCEEECCCCccc-c----ccccCCcCCEEECCCCccccccc---hhhhccEEECCCC
Confidence 56666666422222 22231 58999999999998 1 1223577 999999999999886 5789999999999
Q ss_pred CCCCCC-cccccCcc-------------ccccccccccccCccc
Q psy9363 382 NIVDWG-EVNALGSL-------------PNLKYLNLASTNLRNI 411 (421)
Q Consensus 382 ~l~~~~-~~~~l~~l-------------~~L~~L~Ls~N~l~~i 411 (421)
+++.++ .+..++.+ ++|+.|++++|+++++
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC-------------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 997753 34567666 8899999999999864
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=3.9e-15 Score=139.49 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=66.4
Q ss_pred hhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 316 VMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
..+..+ ++|+.|+|++|.++ ...+..+..+++ ++|+|++|+++++++.. ..+++|+.|+|++|.+. +
T Consensus 151 ~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~ 219 (272)
T 3rfs_A 151 GVFDKL--TNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------C 219 (272)
T ss_dssp TTTTTC--TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------C
T ss_pred HHhccC--ccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------c
Confidence 345577 88999999999888 111244567788 99999999998877654 78889999999999873 3
Q ss_pred ccccccccccccccCcccCCCC
Q psy9363 394 SLPNLKYLNLASTNLRNIKLNK 415 (421)
Q Consensus 394 ~l~~L~~L~Ls~N~l~~i~~p~ 415 (421)
.+++|+.|+++.|.+++ .+|.
T Consensus 220 ~~~~l~~l~~~~n~~~g-~ip~ 240 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSG-VVRN 240 (272)
T ss_dssp CTTTTHHHHHHHHHTGG-GBBC
T ss_pred cCcHHHHHHHHHHhCCC-cccC
Confidence 46788888888888887 4443
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=148.98 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=77.4
Q ss_pred hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCC-CCCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDS-VPGMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
.+..+ ++|+.|+|++|.++ .+ .+..+++ ++|+|++|.|+.+++ .+..+++|+.|+|++|+|+.+. +..+.
T Consensus 180 ~~~~l--~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~ 252 (440)
T 3zyj_A 180 AFEGL--SNLRYLNLAMCNLREIP----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFD 252 (440)
T ss_dssp TTTTC--SSCCEEECTTSCCSSCC----CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSST
T ss_pred hhhcc--cccCeecCCCCcCcccc----ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhhc
Confidence 46678 99999999999998 43 2567788 999999999998754 4588999999999999997765 66889
Q ss_pred ccccccccccccccCcccCC
Q psy9363 394 SLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 394 ~l~~L~~L~Ls~N~l~~i~~ 413 (421)
.+++|+.|+|++|+|+.++.
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCT
T ss_pred CCCCCCEEECCCCCCCccCh
Confidence 99999999999999998664
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=6.1e-15 Score=140.79 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=152.2
Q ss_pred CCcEEECCCCCCCChhhHHHHH--hcCCCCceeec-ccccCCCCCCccc--ccccccchhccccccCCcchhhHHH-HHh
Q psy9363 21 FIEDLDLSRNLLASWFAVGEIT--CQLKHLRHLNL-RIRLKSSSAPAHS--YLAEVVFFVHLGRTLCDEDFVKEGS-LLH 94 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~--~~l~~L~~L~L-~N~l~~~~~p~~~--~~~~~L~~L~L~~~~~~~~~~~~~~-ll~ 94 (421)
.++.|++.++.++. ..+..+. ..+++|++|+| +|++. +..|... +.+++|++|+|++|.+.+..+.+.. .+.
T Consensus 65 ~l~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPA-QLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBH-HHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCH-HHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 57899999999873 3333322 23578999999 69988 4566655 7889999999998887654332221 145
Q ss_pred hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363 95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG 174 (421)
Q Consensus 95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (421)
.+++|++|+|++|.+... .+..++.+++|++||++...-..- ..+... .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~--~------------------ 191 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAF------SCEQVRAFPALTSLDLSDNPGLGE-----RGLMAA--L------------------ 191 (310)
T ss_dssp BCSCCCEEEEECCSSCCC------CTTSCCCCTTCCEEECCSCTTCHH-----HHHHTT--S------------------
T ss_pred hccCCCEEEeeCCCcchh------hHHHhccCCCCCEEECCCCCCccc-----hhhhHH--H------------------
Confidence 799999999999998443 345677889999999875321000 000000 0
Q ss_pred CcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363 175 DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG 254 (421)
Q Consensus 175 ~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g 254 (421)
..+.+..++..++.
T Consensus 192 ---------------------------------~~~~l~~L~~L~Ls--------------------------------- 205 (310)
T 4glp_A 192 ---------------------------------CPHKFPAIQNLALR--------------------------------- 205 (310)
T ss_dssp ---------------------------------CTTSSCCCCSCBCC---------------------------------
T ss_pred ---------------------------------hhhcCCCCCEEECC---------------------------------
Confidence 00000000111111
Q ss_pred chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCCCccEEEeeCc
Q psy9363 255 SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNM 334 (421)
Q Consensus 255 ~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N 334 (421)
.+.+..++ ......+..+ ++|++|+|++|
T Consensus 206 --------------------------------~N~l~~l~-----------------~~~~~l~~~l--~~L~~L~Ls~N 234 (310)
T 4glp_A 206 --------------------------------NTGMETPT-----------------GVCAALAAAG--VQPHSLDLSHN 234 (310)
T ss_dssp --------------------------------SSCCCCHH-----------------HHHHHHHHHT--CCCSSEECTTS
T ss_pred --------------------------------CCCCCchH-----------------HHHHHHHhcC--CCCCEEECCCC
Confidence 00000000 0011135678 99999999999
Q ss_pred ccchhhHHHHhccC---CC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363 335 GYIWADILKLLANF---PV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 335 ~l~~~~i~~~~~~l---~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
.|+ ..++..+..+ ++ ++|+|++|+|+.+|..+ +++|+.|+|++|+|+.++. +..+++|+.|+|++|+|++
T Consensus 235 ~l~-~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 235 SLR-ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCC-CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred CCC-ccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCCCCC
Confidence 998 2111223333 67 99999999999998755 4899999999999987653 6788999999999999986
No 65
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=5.4e-15 Score=145.50 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=61.4
Q ss_pred hhhCCCCcEEECCCCCCCChh--hHHHHHhcCCCCceeecc-cccCC--CCCCccc-------ccccccchhccccccCC
Q psy9363 16 EQAVPFIEDLDLSRNLLASWF--AVGEITCQLKHLRHLNLR-IRLKS--SSAPAHS-------YLAEVVFFVHLGRTLCD 83 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~~~--~i~~~~~~l~~L~~L~L~-N~l~~--~~~p~~~-------~~~~~L~~L~L~~~~~~ 83 (421)
...+++|++|+|++|.|+..+ .++..+.++++|++|+|+ |.+.. +.+|... ..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 345789999999999998432 244456688999999994 43321 2344332 45677888888776664
Q ss_pred cc-hhhHHHHHhhCCCCceeeecCCCC
Q psy9363 84 ED-FVKEGSLLHYLPKLSSLRFTKNPI 109 (421)
Q Consensus 84 ~~-~~~~~~ll~~l~~L~~L~l~~N~l 109 (421)
.. ...+...+..+++|++|+|++|.+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 42 222333366778888888888876
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.56 E-value=1.7e-14 Score=135.84 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=78.0
Q ss_pred hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccccc
Q psy9363 316 VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNAL 392 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l 392 (421)
..+..+ ++|++|+|++|.++ .+ ...+..+++ ++|+|++|+|+.++.. +..+++|+.|+|++|.+.... +..+
T Consensus 123 ~~~~~l--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~ 197 (285)
T 1ozn_A 123 GLFRGL--AALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAF 197 (285)
T ss_dssp TTTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTT
T ss_pred hHhhCC--cCCCEEECCCCcccccC--HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHc
Confidence 345567 89999999999998 32 244677889 9999999999998875 588999999999999997754 6688
Q ss_pred CccccccccccccccCcccC
Q psy9363 393 GSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 393 ~~l~~L~~L~Ls~N~l~~i~ 412 (421)
..+++|+.|++++|++++++
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCC
T ss_pred cCcccccEeeCCCCcCCcCC
Confidence 99999999999999999865
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=6.7e-15 Score=148.01 Aligned_cols=90 Identities=22% Similarity=0.206 Sum_probs=76.7
Q ss_pred hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
.+..+ ++|+.|+|++|.++ .+ .+..+++ ++|+|++|.|+++++. +..+++|+.|+|++|+++... +..+.
T Consensus 191 ~~~~l--~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~ 263 (452)
T 3zyi_A 191 AFEGL--FNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAFD 263 (452)
T ss_dssp TTTTC--TTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-TTTTT
T ss_pred hccCC--CCCCEEECCCCcccccc----cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-HHHhc
Confidence 45677 99999999999998 32 2556788 9999999999987543 488999999999999997765 66789
Q ss_pred ccccccccccccccCcccCC
Q psy9363 394 SLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 394 ~l~~L~~L~Ls~N~l~~i~~ 413 (421)
.+++|+.|+|++|+|+.++.
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCT
T ss_pred CCCCCCEEECCCCcCCccCh
Confidence 99999999999999997654
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=4.5e-15 Score=149.14 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=84.5
Q ss_pred hhhCCCCcEEECCCCCCCChhhHHHHHhcCC----CCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-h
Q psy9363 16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLK----HLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED-F 86 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~----~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~-~ 86 (421)
...+++|++|||++|.|++ ..+..+...++ +|++|+| +|++... .++..+..+++|++|+|++|.++.. +
T Consensus 52 l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp HHTCTTCCEEECTTCCCHH-HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred HHhCCCcCEEeCCCCcCCh-HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 4457999999999999984 23444555676 7999999 5887731 2355566788999999988876433 2
Q ss_pred hhHHHH-HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363 87 VKEGSL-LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER 139 (421)
Q Consensus 87 ~~~~~l-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~ 139 (421)
..+... ....++|++|++++|.+.... ....+..+..+++|+.|+++....
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGG--HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHH--HHHHHHHHhhCCCCCEEECcCCCc
Confidence 223221 223678999999999985432 223456778889999999986543
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=2.9e-15 Score=150.55 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=88.7
Q ss_pred eeeeeecCceeEeecccchhhh----hCCCccCCCCCCC---------chhhhcCCCCCccEEEeeCcccc---hhhHHH
Q psy9363 280 EVKASINAPFLELVGFDQVHEE----QNTNKLPIPNDTS---------GVMEQIFPQGHIHTLTLGNMGYI---WADILK 343 (421)
Q Consensus 280 ~~~~~~~~~~~e~~g~~~l~~~----~~L~~l~l~~~~~---------~~~~~~l~~~~L~~L~Ls~N~l~---~~~i~~ 343 (421)
...+.++...+...++..+... .+|+.+++++..+ +..+..+ ++|+.|+|++|.++ ...++.
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS--SRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT--CCCCEEECTTSCCCHHHHHHHHH
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC--CCceEEECcCCCCCHHHHHHHHH
Confidence 4455666665555443333322 2888888886222 2223357 89999999999998 223566
Q ss_pred HhccCCC-cEEEccCCcCcccCC-----CC-CCCCCCcEEECcCCCCCCCC---cccccCccccccccccccccCccc
Q psy9363 344 LLANFPV-TCLKLPSNRITTLDS-----VP-GMFSSLEELYLQENNIVDWG---EVNALGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 344 ~~~~l~~-~~L~L~~N~l~~l~~-----~~-~~l~~L~~L~Ls~N~l~~~~---~~~~l~~l~~L~~L~Ls~N~l~~i 411 (421)
.+..+++ ++|+|++|.++.... .+ ...++|+.|+|++|.++... .+..+..+++|+.|++++|++++.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 6777889 999999999974221 11 23469999999999996532 123456779999999999999764
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=2.3e-14 Score=139.87 Aligned_cols=124 Identities=17% Similarity=0.061 Sum_probs=85.0
Q ss_pred ChhHHhhhCCCCcEEECCCCCCCChh--hHHHHHhcCC-CCceeec-ccccCCCCCCcccccc-----cccchhcccccc
Q psy9363 11 THDEIEQAVPFIEDLDLSRNLLASWF--AVGEITCQLK-HLRHLNL-RIRLKSSSAPAHSYLA-----EVVFFVHLGRTL 81 (421)
Q Consensus 11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~--~i~~~~~~l~-~L~~L~L-~N~l~~~~~p~~~~~~-----~~L~~L~L~~~~ 81 (421)
..+++....++|++|||++|.|++.+ .+...+.+++ +|++|+| +|++.. ..+..+..+ ++|++|+|++|.
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEEECcCCc
Confidence 44556666667999999999998643 3447788888 8999999 588883 333333343 889999998887
Q ss_pred CCcc-hhhHHHHHhhC-CCCceeeecCCCCCCccccchhHHHHHHhc-cCceeccCCcc
Q psy9363 82 CDED-FVKEGSLLHYL-PKLSSLRFTKNPILAEERVVSSREKTIARL-GGLKLLNGSAI 137 (421)
Q Consensus 82 ~~~~-~~~~~~ll~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l-~~L~~ln~s~i 137 (421)
+++. ...+...+..+ ++|++|+|++|.+.... .......+..+ ++|+.||++..
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS--SSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC--HHHHHHHHTTSCTTCCEEECTTS
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH--HHHHHHHHHhCCCceeEEEccCC
Confidence 7544 34455556667 89999999999984432 11222234443 58998888754
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=1.3e-14 Score=137.44 Aligned_cols=100 Identities=19% Similarity=0.074 Sum_probs=63.4
Q ss_pred hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363 18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL 96 (421)
Q Consensus 18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l 96 (421)
.+++++++++++|.|+.+ |..+ .++|+.|+| +|++.. ..+..+..+++|++|+|++|.++.-.. ...+
T Consensus 8 ~l~~l~~l~~~~~~l~~i---p~~~--~~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l 76 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL---PPDL--PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQV-----DGTL 76 (290)
T ss_dssp CSTTCCEEECTTSCCSSC---CSCC--CTTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEEC-----CSCC
T ss_pred ccCCccEEECCCCCCCcC---CCCC--CCCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccC-----CCCC
Confidence 456788888888888754 3212 357888888 477773 334455677788888887766643222 2467
Q ss_pred CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
++|++|++++|.+... +..++.+++|++|+++
T Consensus 77 ~~L~~L~Ls~N~l~~l-------~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSL-------PLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECCSSCCSSC-------CCCTTTCTTCCEEECC
T ss_pred CcCCEEECCCCcCCcC-------chhhccCCCCCEEECC
Confidence 8888888888877422 1234556666655553
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.52 E-value=8.5e-14 Score=145.04 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=74.2
Q ss_pred CCCccCCCCCCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCC
Q psy9363 303 NTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQEN 381 (421)
Q Consensus 303 ~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N 381 (421)
+|..+.+++..+......+ ++|+.|+|++|.|+ .++ ..+++ +.|+|++|+|+.+|. .+++|+.|+|++|
T Consensus 202 ~L~~L~L~~N~l~~l~~~~--~~L~~L~Ls~N~L~--~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLT--SLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp TCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred hhhEEECcCCcccccCCCC--CCCCEEEccCCccC--cCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC
Confidence 4555555541122222345 88999999999998 112 55677 999999999999886 6789999999999
Q ss_pred CCCCCCcccccCccccccccccccccCccc
Q psy9363 382 NIVDWGEVNALGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 382 ~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i 411 (421)
+|+.+ +..+..+++|+.|+|++|++++.
T Consensus 272 ~L~~l--p~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 272 QLTRL--PESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCCSC--CGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCCcC--CHHHhhccccCEEEecCCCCCCc
Confidence 99865 45788999999999999999864
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=2.9e-15 Score=152.26 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=149.8
Q ss_pred hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHH
Q psy9363 12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEG 90 (421)
Q Consensus 12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~ 90 (421)
|..+ ..+++|++|+|++|.|++... ++.+++|++|+| +|.++. +| ..++|++|+|++|.+.+.+..
T Consensus 51 ~~~~-~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~--l~----~~~~L~~L~L~~N~l~~~~~~-- 117 (487)
T 3oja_A 51 AADL-APFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQE--LL----VGPSIETLHAANNNISRVSCS-- 117 (487)
T ss_dssp GGGG-TTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEE--EE----ECTTCCEEECCSSCCCCEEEC--
T ss_pred HHHH-hCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCC--CC----CCCCcCEEECcCCcCCCCCcc--
Confidence 4444 468999999999999985432 788999999999 588883 23 237999999998877554332
Q ss_pred HHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhC
Q psy9363 91 SLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEAN 170 (421)
Q Consensus 91 ~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~ 170 (421)
.+++|++|+|++|.+.. ..+..++.+++|+.|+++.
T Consensus 118 ----~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~Ls~---------------------------------- 153 (487)
T 3oja_A 118 ----RGQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKL---------------------------------- 153 (487)
T ss_dssp ----CCSSCEEEECCSSCCCS------GGGBCGGGGSSEEEEECTT----------------------------------
T ss_pred ----ccCCCCEEECCCCCCCC------CCchhhcCCCCCCEEECCC----------------------------------
Confidence 48999999999999844 3455678889999988863
Q ss_pred CCCCCcccccccCCCCceEEeecCceeEEEEecccCCCCC-cEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecC
Q psy9363 171 PRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQG-VWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD 249 (421)
Q Consensus 171 ~~~~~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g-~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~ 249 (421)
|.+.+. .|...+ ....+..
T Consensus 154 -----N~l~~~-----------------------~~~~l~~~l~~L~~-------------------------------- 173 (487)
T 3oja_A 154 -----NEIDTV-----------------------NFAELAASSDTLEH-------------------------------- 173 (487)
T ss_dssp -----SCCCEE-----------------------EGGGGGGGTTTCCE--------------------------------
T ss_pred -----CCCCCc-----------------------ChHHHhhhCCcccE--------------------------------
Confidence 211100 000000 0000000
Q ss_pred ccccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCCCccEE
Q psy9363 250 KLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTL 329 (421)
Q Consensus 250 ~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~~L~~L 329 (421)
+.++.+.+ ..++. ...+ ++|+.|
T Consensus 174 ---------------------------------L~Ls~N~l---------------------~~~~~-~~~l--~~L~~L 196 (487)
T 3oja_A 174 ---------------------------------LNLQYNFI---------------------YDVKG-QVVF--AKLKTL 196 (487)
T ss_dssp ---------------------------------EECTTSCC---------------------CEEEC-CCCC--TTCCEE
T ss_pred ---------------------------------EecCCCcc---------------------ccccc-cccC--CCCCEE
Confidence 01111100 00111 1246 899999
Q ss_pred EeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccc
Q psy9363 330 TLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA 404 (421)
Q Consensus 330 ~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls 404 (421)
+|++|.|+ .+ ..+..+++ +.|+|++|.|+.+|..+..+++|+.|++++|.+.....+..+..++.|+.++++
T Consensus 197 ~Ls~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 197 DLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ECCCCCCCCCC---HhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999998 32 23567788 999999999999998888899999999999999644445678889999999886
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=4e-14 Score=132.59 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=77.0
Q ss_pred hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
.+..+ ++|++|+|++|.++ .+ +..+..+++ +.|+|++|+++.+++.. ..+++|+.|+|++|+++..+ +..++
T Consensus 128 ~~~~l--~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~ 202 (272)
T 3rfs_A 128 VFDKL--TNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFD 202 (272)
T ss_dssp TTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTT
T ss_pred HhccC--CCCCEEECCCCccCccC--HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHh
Confidence 34567 89999999999998 32 244677889 99999999999888754 78999999999999998765 55688
Q ss_pred ccccccccccccccCcccCCC
Q psy9363 394 SLPNLKYLNLASTNLRNIKLN 414 (421)
Q Consensus 394 ~l~~L~~L~Ls~N~l~~i~~p 414 (421)
.+++|+.|++++|++.. ..|
T Consensus 203 ~l~~L~~L~l~~N~~~~-~~~ 222 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDC-TCP 222 (272)
T ss_dssp TCTTCCEEECCSSCBCC-CTT
T ss_pred CCcCCCEEEccCCCccc-cCc
Confidence 99999999999999975 444
No 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=140.16 Aligned_cols=106 Identities=14% Similarity=-0.017 Sum_probs=81.7
Q ss_pred hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363 16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH 94 (421)
Q Consensus 16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~ 94 (421)
...|+.....|+++|.++.+ |..+ .++|++|++ +|++.. ..+..++.+++|++|+|++|.+.+..+.. +.
T Consensus 27 ~~~C~~~~~c~~~~~~l~~i---P~~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~ 97 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSI---PSGL--TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDS---FS 97 (353)
T ss_dssp CCEECTTSEEECCSTTCSSC---CTTC--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTT---TT
T ss_pred CCCCCCCeEeeCCCCCcccc---cccc--cccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhh---cC
Confidence 34588888899999999865 4322 368999999 588883 33435678999999999888775543333 66
Q ss_pred hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
.+++|++|++++|.+... ....++.+++|++|+++.
T Consensus 98 ~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNL------SSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp TCTTCCEEECCSSCCSSC------CHHHHTTCTTCSEEECTT
T ss_pred CCCCCCEEECCCCcCCcC------CHhHhCCCccCCEEECCC
Confidence 799999999999998543 345688999999999974
No 76
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.49 E-value=4e-14 Score=108.69 Aligned_cols=84 Identities=31% Similarity=0.500 Sum_probs=65.1
Q ss_pred ccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhHHH
Q psy9363 181 MEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEA 260 (421)
Q Consensus 181 ~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~~a 260 (421)
..+.+++||.-.....+++||+|+++...|.|+|||||++ +||++|+++|++||+|. +++|.|++++++....++.+|
T Consensus 9 ~~~~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-p~~G~Fv~~~~v~~~~~~~~~ 86 (96)
T 2z0w_A 9 GELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKP-HGKNDGSVGGVQYFSCS-PRYGIFAPPSRVQRVTDSLDT 86 (96)
T ss_dssp --CCTTCCCCCCCCCCEEEEEEECCSSSSSCEEEEEESSS-CSSBSSEETTEESSCCC-TTSEEEECGGGCCCTTC----
T ss_pred ccCCCCCEEEECCCcEEEEEEeccCCCCCCeEEEEEeCCC-CCCCCCEECCEEeeecC-CCeEEEEcHHHceeccchhhh
Confidence 3477999987223479999999999999999999999999 59999999999999995 899999999999877788888
Q ss_pred hhhhhc
Q psy9363 261 LHRKYV 266 (421)
Q Consensus 261 l~~~y~ 266 (421)
+.+.+.
T Consensus 87 ~~e~~~ 92 (96)
T 2z0w_A 87 LSEISG 92 (96)
T ss_dssp ------
T ss_pred hhhhcc
Confidence 776554
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.47 E-value=3.9e-14 Score=142.58 Aligned_cols=97 Identities=14% Similarity=0.013 Sum_probs=51.5
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCccccccccc-------------chhccccccCCc
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVV-------------FFVHLGRTLCDE 84 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L-------------~~L~L~~~~~~~ 84 (421)
.++|++|++++|.|+ .+|..+++|++|++|++ .|++. +.+|..++.+.+| ++|++++|.+++
T Consensus 10 ~~~L~~L~l~~n~l~---~iP~~i~~L~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWE-RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHH-HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccchhhhcccCchh---hCChhHhcccchhhhhccCCccc-ccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 368999999999994 78888999999999999 58888 5788888777766 666776665533
Q ss_pred chhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 85 DFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 85 ~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
++.+ .++|++|++++|.+.+.. . .+++|+.|+.+.
T Consensus 86 -lp~~------~~~L~~L~l~~n~l~~lp--~--------~~~~L~~L~l~~ 120 (454)
T 1jl5_A 86 -LPEL------PPHLESLVASCNSLTELP--E--------LPQSLKSLLVDN 120 (454)
T ss_dssp -CCSC------CTTCSEEECCSSCCSSCC--C--------CCTTCCEEECCS
T ss_pred -CCCC------cCCCCEEEccCCcCCccc--c--------ccCCCcEEECCC
Confidence 2222 478999999999885532 1 136788887764
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=4.4e-13 Score=126.81 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=42.7
Q ss_pred hhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCC
Q psy9363 318 EQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW 386 (421)
Q Consensus 318 ~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~ 386 (421)
+..+ ++|+.|+|++|.++ .. . +..+++ +.|+|++|.|+.++. +..+++|+.|++++|.+...
T Consensus 152 l~~l--~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 152 LSRL--TKLDTLSLEDNQISDIV---P-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GGGC--TTCSEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred hccC--CCCCEEEccCCccccch---h-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence 3455 77777777777777 22 1 556677 777777777777653 56777777777777777553
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=3.5e-13 Score=131.43 Aligned_cols=271 Identities=12% Similarity=0.079 Sum_probs=158.8
Q ss_pred EEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCC----ccccccc-ccchhccccccCCcc-hhhHHHHHhhC
Q psy9363 24 DLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAP----AHSYLAE-VVFFVHLGRTLCDED-FVKEGSLLHYL 96 (421)
Q Consensus 24 ~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p----~~~~~~~-~L~~L~L~~~~~~~~-~~~~~~ll~~l 96 (421)
.++|+.|.++ +.++..+...++|++|+| +|.+.. ..+ ..+..++ +|++|+|++|.+++. +..+..++...
T Consensus 2 ~~~ls~n~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGS--NPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTC--CHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccch--HHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 5789999999 678887777777999999 588883 222 2334566 899999988877554 44455545555
Q ss_pred -CCCceeeecCCCCCCccccchhHHHHHHhc-cCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363 97 -PKLSSLRFTKNPILAEERVVSSREKTIARL-GGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG 174 (421)
Q Consensus 97 -~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l-~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (421)
++|++|+|++|.+.... .......+..+ ++|+.||++...-.+.... .....+..
T Consensus 79 ~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~~~l~~------------------- 135 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKS--SDELVKTLAAIPFTITVLDLGWNDFSSKSSS--EFKQAFSN------------------- 135 (362)
T ss_dssp CTTCCEEECCSSCGGGSC--HHHHHHHHHTSCTTCCEEECCSSCGGGSCHH--HHHHHHTT-------------------
T ss_pred CCCccEEECcCCcCChHH--HHHHHHHHHhCCCCccEEECcCCcCCcHHHH--HHHHHHHh-------------------
Confidence 99999999999985432 11222334455 8999999986543221000 00000000
Q ss_pred CcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363 175 DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG 254 (421)
Q Consensus 175 ~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g 254 (421)
....+. ..+++.+.. + ..+
T Consensus 136 ----------~~~~L~--------------------------~L~Ls~N~l-----------------------~--~~~ 154 (362)
T 3goz_A 136 ----------LPASIT--------------------------SLNLRGNDL-----------------------G--IKS 154 (362)
T ss_dssp ----------SCTTCC--------------------------EEECTTSCG-----------------------G--GSC
T ss_pred ----------CCCcee--------------------------EEEccCCcC-----------------------C--HHH
Confidence 000000 011110000 0 000
Q ss_pred -chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCC-CccEEEee
Q psy9363 255 -SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQG-HIHTLTLG 332 (421)
Q Consensus 255 -~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~-~L~~L~Ls 332 (421)
..+.+++.... .....+.++.+.+...+... +...+..+ + +|+.|+|+
T Consensus 155 ~~~l~~~l~~~~------------~~L~~L~Ls~n~l~~~~~~~----------------l~~~l~~~--~~~L~~L~Ls 204 (362)
T 3goz_A 155 SDELIQILAAIP------------ANVNSLNLRGNNLASKNCAE----------------LAKFLASI--PASVTSLDLS 204 (362)
T ss_dssp HHHHHHHHHTSC------------TTCCEEECTTSCGGGSCHHH----------------HHHHHHTS--CTTCCEEECT
T ss_pred HHHHHHHHhcCC------------ccccEeeecCCCCchhhHHH----------------HHHHHHhC--CCCCCEEECC
Confidence 01222221100 01122222222221111111 11234455 4 99999999
Q ss_pred Ccccc---hhhHHHHhccC-CC-cEEEccCCcCcccCC-----CCCCCCCCcEEECcCCCCCCCCc------ccccCccc
Q psy9363 333 NMGYI---WADILKLLANF-PV-TCLKLPSNRITTLDS-----VPGMFSSLEELYLQENNIVDWGE------VNALGSLP 396 (421)
Q Consensus 333 ~N~l~---~~~i~~~~~~l-~~-~~L~L~~N~l~~l~~-----~~~~l~~L~~L~Ls~N~l~~~~~------~~~l~~l~ 396 (421)
+|.|+ ...++..+... ++ ++|+|++|.|+..+. ....+++|+.|+|++|.+..... ...+..++
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 99998 22355555554 47 999999999987543 23678999999999999654431 12466788
Q ss_pred cccccccccccCccc
Q psy9363 397 NLKYLNLASTNLRNI 411 (421)
Q Consensus 397 ~L~~L~Ls~N~l~~i 411 (421)
+|+.||+++|++...
T Consensus 285 ~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 285 KIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEEECTTSCBCCGG
T ss_pred ceEEEecCCCcCCCc
Confidence 999999999999864
No 80
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.44 E-value=1.9e-13 Score=101.62 Aligned_cols=73 Identities=32% Similarity=0.690 Sum_probs=64.0
Q ss_pred cCCCCceEEeec--CceeEEEEecccCC-CCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhH
Q psy9363 182 EDDIGLRVCDSE--GHRGTIRYVGSVEG-TQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFM 258 (421)
Q Consensus 182 ~~~i~~rv~~l~--~~~~~~r~~G~ip~-~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~ 258 (421)
.+.+++||. +. ...+++||+|+++. ..|.|+|||||++. ||++|+++|.+||+|. +++|.|++++++..+ +||
T Consensus 5 ~i~vG~Rv~-v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~-GkndGsv~G~rYF~C~-~~~G~Fvr~~~v~~g-d~P 80 (84)
T 4b6m_A 5 TIHVGDRCL-CRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPV-GKGDGTVKGTRVFQCQ-PNYGGFLRPDQVEVG-DFP 80 (84)
T ss_dssp CCCTTCEEE-ETTTTEEEEEEEEEECTTSCSSEEEEEEESSSC-CSBSSEETTEESSCCC-TTSEEEECGGGEEEC-CCC
T ss_pred CcccCCEEE-EcCCCeEEEEEEEecCCCCCCCEEEEEEECCCC-CCcCCEECCEEEEecC-CCeEEEecHHHeEEC-CcC
Confidence 477999988 53 47899999999986 57899999999986 9999999999999997 899999999999777 444
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=1.7e-13 Score=134.80 Aligned_cols=117 Identities=13% Similarity=-0.000 Sum_probs=83.7
Q ss_pred hCCCCcEEECCCCCCCCh--------hhHHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc
Q psy9363 18 AVPFIEDLDLSRNLLASW--------FAVGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED 85 (421)
Q Consensus 18 ~~~~L~~L~Ls~N~ls~~--------~~i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~ 85 (421)
.+++|++|+|++|.+..+ ..+...+.++++|++|+| .|++... .+|..+..+++|++|+|++|.++..
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 589999999999866532 233444578999999999 5888832 2455667889999999998877433
Q ss_pred -hhhHHHHHhhC---------CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363 86 -FVKEGSLLHYL---------PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA 136 (421)
Q Consensus 86 -~~~~~~ll~~l---------~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~ 136 (421)
+..+...+..+ ++|++|+|++|.+.... -......+..+++|+.|+++.
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS--MKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG--HHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH--HHHHHHHHHhCCCcCEEECcC
Confidence 22333335555 99999999999985321 111224677888999988874
No 82
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.44 E-value=1.9e-13 Score=104.96 Aligned_cols=74 Identities=36% Similarity=0.687 Sum_probs=66.3
Q ss_pred cCCCCceEEeec-----CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCch
Q psy9363 182 EDDIGLRVCDSE-----GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS 256 (421)
Q Consensus 182 ~~~i~~rv~~l~-----~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~ 256 (421)
.+.+++||. +. ...+++||+|+++...|.|+|||||++. ||++|+++|+|||+|. +++|.|++++++..+ +
T Consensus 11 ~~~vG~rv~-V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~-GKnDGsv~G~rYF~C~-p~~G~Fvr~~~v~~g-d 86 (95)
T 1lpl_A 11 NIMVGNRCE-VTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPV-GKNDGSVAGVRYFDCD-PKYGGFVRPVDVKVG-D 86 (95)
T ss_dssp TCCTTCEEE-ECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSC-SSBSSEETTEECSCCC-TTSEEEECGGGEEES-C
T ss_pred cCCCCCEEE-EccCCCCceEEEEEEecccCCCCCEEEEEEccCCC-CccCCEECCEEEeEeC-CCEEEEEcHHHceEC-C
Confidence 367999998 54 4799999999999999999999999998 9999999999999995 899999999999877 5
Q ss_pred hHH
Q psy9363 257 FME 259 (421)
Q Consensus 257 ~~~ 259 (421)
||+
T Consensus 87 fp~ 89 (95)
T 1lpl_A 87 FPE 89 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 83
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.44 E-value=2.2e-13 Score=102.51 Aligned_cols=75 Identities=35% Similarity=0.553 Sum_probs=65.5
Q ss_pred CCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhHHH
Q psy9363 183 DDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEA 260 (421)
Q Consensus 183 ~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~~a 260 (421)
+.+++|+. +.. ..+++||+|+++...|.|+|||||++ +||++|+++|++||+|. +.+|.|++++++....+|.++
T Consensus 3 ~~vG~rv~-v~g~~~GtVryvG~~~~~~G~wvGVelDep-~GKndGsv~G~rYF~c~-~~~G~Fvr~~~v~~~~~~~~~ 78 (86)
T 2e3i_A 3 FRVGERVW-VNGNKPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRKVQAEDE 78 (86)
T ss_dssp CCTTCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSS-CSSBSSEETTEESSCCS-TTCEEEECGGGEESSCCC---
T ss_pred ccCCCEEE-ECCCcEEEEEEeeeCCCCCCcEEEEEeCCC-CCccCCEECCEEeeecC-CCeEEEEcHHHcccccchhhh
Confidence 57899998 654 69999999999999999999999998 59999999999999997 899999999999777666654
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=9.2e-13 Score=126.63 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcC--CCCceeec-ccccCCCCCCcccccccccchhccccccCCcc-hhhHHHHHhhC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQL--KHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDED-FVKEGSLLHYL 96 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l--~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~-~~~~~~ll~~l 96 (421)
.++.||+++|.+. +..+..+ ++++.|++ +|.+.. ..+. ...+++|++|+|++|.+++. ++. .+..+
T Consensus 48 ~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~-~~~~-~~~~~~L~~L~L~~~~l~~~~~~~---~~~~~ 117 (336)
T 2ast_B 48 LWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQ-PLAE-HFSPFRVQHMDLSNSVIEVSTLHG---ILSQC 117 (336)
T ss_dssp TSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECS-CCCS-CCCCBCCCEEECTTCEECHHHHHH---HHTTB
T ss_pred hheeeccccccCC-----HHHHHhhhhccceEEEcCCccccc-cchh-hccCCCCCEEEccCCCcCHHHHHH---HHhhC
Confidence 4899999999998 2334556 89999999 588883 4443 45789999999988876443 333 37889
Q ss_pred CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
++|++|++++|.+ .+..+..++.+++|+.|+++..
T Consensus 118 ~~L~~L~L~~~~l------~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 118 SKLQNLSLEGLRL------SDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCCSEEECTTCBC------CHHHHHHHTTCTTCSEEECTTC
T ss_pred CCCCEEeCcCccc------CHHHHHHHhcCCCCCEEECCCC
Confidence 9999999999997 3445667889999999999753
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.43 E-value=7.4e-13 Score=126.28 Aligned_cols=99 Identities=21% Similarity=0.152 Sum_probs=78.7
Q ss_pred hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363 17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY 95 (421)
Q Consensus 17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~ 95 (421)
..+++|++|+|++|.|+++.. +..+++|++|+| +|++.. ++ .++.+++|++|+|++|.+.+-.. +..
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~-----l~~ 127 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-----LAG 127 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-----GTT
T ss_pred hccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCchh-----hcC
Confidence 468999999999999997654 788999999999 588884 34 46788999999999887754322 678
Q ss_pred CCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
+++|++|++++|.+.... + ++.+++|+.|+++
T Consensus 128 l~~L~~L~l~~n~l~~~~------~--l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITNIS------P--LAGLTNLQYLSIG 159 (308)
T ss_dssp CTTCCEEECCSSCCCCCG------G--GGGCTTCCEEECC
T ss_pred CCCCCEEECCCCccCcCc------c--ccCCCCccEEEcc
Confidence 999999999999985432 1 6677777766664
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=4.4e-13 Score=126.82 Aligned_cols=90 Identities=21% Similarity=0.158 Sum_probs=75.9
Q ss_pred CchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCccc
Q psy9363 314 SGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 314 ~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~ 390 (421)
.+..+..+ ++|++|+|++|.|+ .+ +..+..+++ +.|+|++|+|+.+|... ..+++|+.|+|++|+|+.++ .
T Consensus 116 ~~~~~~~l--~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~ 189 (290)
T 1p9a_G 116 PLGALRGL--GELQELYLKGNELKTLP--PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--K 189 (290)
T ss_dssp CSSTTTTC--TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--T
T ss_pred CHHHHcCC--CCCCEEECCCCCCCccC--hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--h
Confidence 34567788 99999999999998 32 245667888 99999999999998765 77999999999999998754 4
Q ss_pred ccCccccccccccccccCc
Q psy9363 391 ALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N~l~ 409 (421)
.+..+++|+.|+|++|++.
T Consensus 190 ~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCCCSEEECCSCCBC
T ss_pred hhcccccCCeEEeCCCCcc
Confidence 6677889999999999985
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=5.6e-13 Score=138.87 Aligned_cols=76 Identities=22% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 402 (421)
++|+.|++++|.++ .+...+++ +.|+|++|.|+.+| ..+++|+.|+|++|.|+.++. .+++|+.|+
T Consensus 201 ~~L~~L~L~~N~l~-----~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~ 267 (622)
T 3g06_A 201 SELYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLS 267 (622)
T ss_dssp TTCCEEECCSSCCS-----SCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEE
T ss_pred chhhEEECcCCccc-----ccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEe
Confidence 89999999999998 12234577 99999999999988 456899999999999987652 578999999
Q ss_pred cccccCcccC
Q psy9363 403 LASTNLRNIK 412 (421)
Q Consensus 403 Ls~N~l~~i~ 412 (421)
|++|+|+.++
T Consensus 268 Ls~N~L~~lp 277 (622)
T 3g06_A 268 VYRNQLTRLP 277 (622)
T ss_dssp CCSSCCCSCC
T ss_pred CCCCCCCcCC
Confidence 9999999653
No 88
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.43 E-value=3.9e-13 Score=97.68 Aligned_cols=67 Identities=39% Similarity=0.661 Sum_probs=61.1
Q ss_pred CCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 183 DDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 183 ~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
+.+++|+. +.. ..+++||+|+++...|.|+|||||++. ||++|+++|.+||+|. +.+|+|++++++.
T Consensus 3 ~~vG~rv~-v~g~~~G~VryvG~~~~~~g~w~GVeld~p~-GkndGsv~G~rYF~c~-p~~G~Fv~~~kvs 70 (72)
T 3rdv_A 3 FRVGERVW-VNGNKPGFIQFLGETQFAPGQWAGIVLDEPI-GKNDGSVAGVRYFQCE-PLKGIFTRPSKLT 70 (72)
T ss_dssp CCTTCEEE-ETTTEEEEEEEEECCSSSSSCEEEEEESSSC-SSBSSEETTEESCCCS-TTCEEEECGGGEE
T ss_pred cccCCEEE-ECCCCEEEEEEeeeCCCCCceEEEEEECCCC-CccCCEECCEEeCccC-CCCEEEecHHHcc
Confidence 67899998 554 689999999999999999999999987 9999999999999997 8999999998863
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.43 E-value=1.6e-13 Score=125.72 Aligned_cols=81 Identities=22% Similarity=0.187 Sum_probs=62.6
Q ss_pred hhhcCCCCCcc-EEEeeCcccc-hhhHHHHhccCCC-cEEEccCCc-CcccCCCC-CCC-CCCcEEECcCCCCCCCCccc
Q psy9363 317 MEQIFPQGHIH-TLTLGNMGYI-WADILKLLANFPV-TCLKLPSNR-ITTLDSVP-GMF-SSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 317 ~~~~l~~~~L~-~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~-l~~l~~~~-~~l-~~L~~L~Ls~N~l~~~~~~~ 390 (421)
.+..+ ++|+ .|++++|.++ .+. ..+.. ++ +.|+|++|+ ++.++... ..+ ++|+.|++++|+++.++.
T Consensus 150 ~~~~l--~~L~~~L~l~~n~l~~i~~--~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-- 222 (239)
T 2xwt_C 150 AFQGL--CNETLTLKLYNNGFTSVQG--YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-- 222 (239)
T ss_dssp TTTTT--BSSEEEEECCSCCCCEECT--TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC--
T ss_pred cccch--hcceeEEEcCCCCCcccCH--hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh--
Confidence 35567 8999 9999999998 322 23333 67 999999995 99887654 777 899999999999977652
Q ss_pred ccCccccccccccccc
Q psy9363 391 ALGSLPNLKYLNLAST 406 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N 406 (421)
..+++|+.|+++++
T Consensus 223 --~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 --KGLEHLKELIARNT 236 (239)
T ss_dssp --TTCTTCSEEECTTC
T ss_pred --hHhccCceeeccCc
Confidence 26788888888876
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=2.4e-13 Score=130.76 Aligned_cols=107 Identities=13% Similarity=0.062 Sum_probs=80.9
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
++++.|++++|.++.. .+. +..+++|++|+| +|.+....++.....+++|++|+|++|.+++..... +..+++
T Consensus 70 ~~l~~L~l~~n~l~~~--~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~---l~~~~~ 143 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP--LAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT---LAKNSN 143 (336)
T ss_dssp TTCSEEECTTCEECSC--CCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH---HTTCTT
T ss_pred ccceEEEcCCcccccc--chh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH---HhcCCC
Confidence 7999999999998842 233 567899999999 587773226666778899999999888765443332 677999
Q ss_pred CceeeecCC-CCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 99 LSSLRFTKN-PILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 99 L~~L~l~~N-~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
|++|++++| .+.. ...+..+..+++|+.|+++..
T Consensus 144 L~~L~L~~~~~l~~-----~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 144 LVRLNLSGCSGFSE-----FALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CSEEECTTCBSCCH-----HHHHHHHHHCTTCCEEECCCC
T ss_pred CCEEECCCCCCCCH-----HHHHHHHhcCCCCCEEcCCCC
Confidence 999999999 5521 124566889999999998743
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=9.5e-14 Score=132.50 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCCCcEEECCCCCCCChhhHHHHH--hcCCCCceeec-ccccCCCCCCc----ccccccccchhccccccCCcchhhHHH
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEIT--CQLKHLRHLNL-RIRLKSSSAPA----HSYLAEVVFFVHLGRTLCDEDFVKEGS 91 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~--~~l~~L~~L~L-~N~l~~~~~p~----~~~~~~~L~~L~L~~~~~~~~~~~~~~ 91 (421)
+++|++|+|++|.++ +.++..+ ..+++|++|+| +|++.. ..+. ....+++|++|+|++|.+.+.++..
T Consensus 90 ~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-- 164 (310)
T 4glp_A 90 YSRLKELTLEDLKIT--GTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ-- 164 (310)
T ss_dssp HSCCCEEEEESCCCB--SCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS--
T ss_pred cCceeEEEeeCCEec--cchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH--
Confidence 467999999999998 3445545 78999999999 598883 4442 2235889999999988775554443
Q ss_pred HHhhCCCCceeeecCCCCCCccccchhH-HHHHHhccCceeccCCc
Q psy9363 92 LLHYLPKLSSLRFTKNPILAEERVVSSR-EKTIARLGGLKLLNGSA 136 (421)
Q Consensus 92 ll~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~i~~l~~L~~ln~s~ 136 (421)
+..+++|++|+|++|++.... +.. ...++.+++|++|+++.
T Consensus 165 -~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 165 -VRAFPALTSLDLSDNPGLGER---GLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp -CCCCTTCCEEECCSCTTCHHH---HHHTTSCTTSSCCCCSCBCCS
T ss_pred -hccCCCCCEEECCCCCCccch---hhhHHHhhhcCCCCCEEECCC
Confidence 678999999999999974321 011 12346888999998874
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=5.9e-13 Score=124.36 Aligned_cols=102 Identities=22% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCc-ccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPA-HSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~-~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
++|++|+|++|.|+..+ +..+..+++|++|+| +|+++. +|. ....+++|++|+|++|.+..-+... +..++
T Consensus 37 ~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGV---FDQLV 109 (270)
T ss_dssp TTCSEEECCSSCCSCCC--TTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCCCCCCTTT---TTTCS
T ss_pred CCCCEEECcCCCCCeeC--HHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcCCcCCHhH---ccccc
Confidence 57999999999999653 345788999999999 588883 443 3467899999999888775544433 67899
Q ss_pred CCceeeecCCCCCCccccchhHHHHHHhccCceeccC
Q psy9363 98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNG 134 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~ 134 (421)
+|++|++++|.+.... +..++.+++|+.|++
T Consensus 110 ~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLP------PRVFDSLTKLTYLSL 140 (270)
T ss_dssp SCCEEECCSSCCCCCC------TTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCeeC------HHHhCcCcCCCEEEC
Confidence 9999999999984332 223445555554444
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=9.3e-13 Score=136.42 Aligned_cols=94 Identities=12% Similarity=0.029 Sum_probs=61.7
Q ss_pred hhhhcCCCCCccEEEeeCcc--cchhhHHHHhccCCC-cEEEccCCcCcc--cCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363 316 VMEQIFPQGHIHTLTLGNMG--YIWADILKLLANFPV-TCLKLPSNRITT--LDSVPGMFSSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~--l~~~~i~~~~~~l~~-~~L~L~~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 390 (421)
..+..+ ++|+.|+|++|. ++...+..+...+++ ++|+|++|.++. ++..+..+++|+.|+|++|.+++.....
T Consensus 430 ~~~~~~--~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 430 SLLIGC--KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHC--TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHhC--CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 346667 888888887433 552233344555777 888888888863 3332366788888888888874332222
Q ss_pred ccCccccccccccccccCccc
Q psy9363 391 ALGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N~l~~i 411 (421)
.+..+++|+.|+|++|++++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 344678888888888887764
No 94
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=2.2e-13 Score=118.89 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=101.3
Q ss_pred HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcc-cccccccchhccccccCCcchhhHHH
Q psy9363 14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAH-SYLAEVVFFVHLGRTLCDEDFVKEGS 91 (421)
Q Consensus 14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~-~~~~~~L~~L~L~~~~~~~~~~~~~~ 91 (421)
.+...+++|++|||++|.|+++ ..++.+++|++|+| +|+++. +|.. .+.+++|++|+|++|.+ ..++.+..
T Consensus 36 ~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~ 108 (176)
T 1a9n_A 36 NLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSL-VELGDLDP 108 (176)
T ss_dssp CGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCC-CCGGGGGG
T ss_pred HhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcC-CcchhhHh
Confidence 3566667999999999999965 35678999999999 598883 3433 37889999999988877 34444333
Q ss_pred HHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHH
Q psy9363 92 LLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIK 151 (421)
Q Consensus 92 ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~ 151 (421)
+..+++|++|++++|++... ..++..+++.+++|++||++.++..+|..++..|-.
T Consensus 109 -l~~l~~L~~L~l~~N~i~~~---~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~~~~ 164 (176)
T 1a9n_A 109 -LASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKG 164 (176)
T ss_dssp -GGGCTTCCEEECCSSGGGGS---TTHHHHHHHHCTTCSEETTEECCHHHHHHHHHTTC-
T ss_pred -hhcCCCCCEEEecCCCCCCc---HhHHHHHHHHCCccceeCCCcCCHHHHHHHHHHHhc
Confidence 77899999999999998644 456677899999999999999999999887765543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.3e-12 Score=135.78 Aligned_cols=95 Identities=17% Similarity=0.068 Sum_probs=60.9
Q ss_pred CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363 21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99 (421)
Q Consensus 21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L 99 (421)
.+..++|+.+.+++.... ..|++|+.|++ +|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|
T Consensus 22 ~l~~l~l~~~~i~~~~~~----~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L 89 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP-----LTNLKNL 89 (605)
T ss_dssp HHHHHHTTCSCTTSEECH----HHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG-----GGGCTTC
T ss_pred HHHHHhccCCCcccccch----hcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh-----hccCCCC
Confidence 356677777777754333 34677888888 466663 33 35677888888887776644332 5568888
Q ss_pred ceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 100 SSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 100 ~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
+.|+|++|.+... ..++.+++|+.|+++
T Consensus 90 ~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 90 GWLFLDENKIKDL--------SSLKDLKKLKSLSLE 117 (605)
T ss_dssp CEEECCSSCCCCC--------TTSTTCTTCCEEECT
T ss_pred CEEECcCCCCCCC--------hhhccCCCCCEEEec
Confidence 8888888887432 135566666666554
No 96
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.38 E-value=1.2e-12 Score=101.98 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=63.9
Q ss_pred cCCCCceEEeec---CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCc
Q psy9363 182 EDDIGLRVCDSE---GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGS 255 (421)
Q Consensus 182 ~~~i~~rv~~l~---~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~ 255 (421)
.+.+++||. +. ...+++||+|+++...|.|+||||||..+||++|+++|++||+|. +++|.|++++++....
T Consensus 17 ~l~VG~RV~-V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~-p~~G~FVr~~~v~~~~ 91 (104)
T 1ixd_A 17 GLEVGSLAE-VKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA-LKKALFVKLKSCRPDS 91 (104)
T ss_dssp CCCTTSEEE-ECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCC-TTCBEEEEGGGEEECC
T ss_pred ccccCCEEE-ECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecC-CCcEEEEcHHHceecc
Confidence 378999998 54 478999999999999999999999666679999999999999997 8999999999986553
No 97
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.37 E-value=1.1e-12 Score=99.41 Aligned_cols=69 Identities=32% Similarity=0.594 Sum_probs=62.9
Q ss_pred CCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363 183 DDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG 254 (421)
Q Consensus 183 ~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g 254 (421)
+.+++|+. +.. ..+++||+|+++...|.|+|||||+.. ||++|+++|.+||+|. +++|.|++++++..+
T Consensus 2 l~vG~rV~-V~g~~~GtVryvG~~~~~~G~wvGVelDep~-GKndGsv~G~rYF~C~-p~~G~Fv~~~kv~~~ 71 (90)
T 2e3h_A 2 LKIGDRVL-VGGTKAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI 71 (90)
T ss_dssp CCTTCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-CSBSSEETTEESCCCC-TTCEEEEEGGGEEET
T ss_pred CcCCCEEE-ECCCCEEEEEEeccCCCCCCeEEEEEECCCC-CCCCCEECCEEeeecC-CCcEEEEcHHHeEEC
Confidence 56899998 654 689999999999999999999999986 9999999999999996 899999999998655
No 98
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.36 E-value=2.4e-12 Score=98.45 Aligned_cols=70 Identities=33% Similarity=0.562 Sum_probs=63.3
Q ss_pred cCCCCceEEeec-CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363 182 EDDIGLRVCDSE-GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG 254 (421)
Q Consensus 182 ~~~i~~rv~~l~-~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g 254 (421)
.+.+++||. +. ...+++||+|+++...|.|+|||||++ +||++|+++|++||+|. +++|.|++++++...
T Consensus 18 ~~~vG~rV~-V~g~~~GtVryvG~v~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-p~~G~Fvr~~kv~~~ 88 (95)
T 2cp2_A 18 DFVVGERVW-VNGVKPGVVQYLGETQFAPGQWAGVVLDDP-VGKNDGAVGGVRYFECP-ALQGIFTRPSKLTRQ 88 (95)
T ss_dssp SCCTTCEEE-GGGSCEEEEEEEEECSSSCSEEEEEEESSS-CSSBBSEETTEECCCCC-TTTEEEECGGGCCSS
T ss_pred cCcCCCEEE-ECCceEEEEEEecccCCCCCEEEEEEecCC-CCccCCEECCEEecccC-CCeEEEEcHHHCccC
Confidence 378999998 65 479999999999999999999999999 69999999999999997 899999999988543
No 99
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.36 E-value=8.5e-13 Score=104.34 Aligned_cols=73 Identities=33% Similarity=0.596 Sum_probs=65.3
Q ss_pred cCCCCceEEeec-----CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCch
Q psy9363 182 EDDIGLRVCDSE-----GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS 256 (421)
Q Consensus 182 ~~~i~~rv~~l~-----~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~ 256 (421)
.+.+++||. +. ...+++||+|+++...|.|+|||||++. ||++|+++|++||+|. +++|.|++++++..| +
T Consensus 32 ~~~VG~RV~-V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~-GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~g-d 107 (113)
T 1whg_A 32 AISVGSRCE-VRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPL-GKNDGSVNGKRYFECQ-AKYGAFVKPSAVTVG-D 107 (113)
T ss_dssp TSCSSCEEE-ECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSC-CSBBSEETTEECSCCC-TTTEEEECGGGEEEE-E
T ss_pred cCCCCCEEE-EecCCCcceEEEEEEecccCCCCCEEEEEEecCCC-CccCCEECCEEEeeeC-CCeEEEECHHHeEEC-C
Confidence 477999998 53 3899999999999999999999999998 9999999999999997 899999999998766 4
Q ss_pred hH
Q psy9363 257 FM 258 (421)
Q Consensus 257 ~~ 258 (421)
||
T Consensus 108 fp 109 (113)
T 1whg_A 108 SG 109 (113)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 100
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.35 E-value=1.7e-12 Score=99.31 Aligned_cols=71 Identities=35% Similarity=0.677 Sum_probs=64.0
Q ss_pred ccccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 179 QVMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 179 ~~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
....+.+++||. +.. ..+++||+|+++...|.|+|||||++. ||++|+++|++||+|. +.+|.|++++++.
T Consensus 13 ~~~~~~vG~RV~-V~g~~~GtVryvG~v~~~~G~wvGVelDep~-GKnDGsv~G~rYF~C~-~~~G~Fv~~~kv~ 84 (95)
T 2cp0_A 13 SALGLRLGDRVL-LDGQKTGTLRFCGTTEFASGQWVGVELDEPE-GKNDGSVGGVRYFICP-PKQGLFASVSKIS 84 (95)
T ss_dssp HHHTCCTTCEEE-ETTTEEEEEEEEECCSSSCSCEEEEEESSSC-CSBCSEETTEECCCCS-SSCEEEECGGGEE
T ss_pred cccCCCCCCEEE-ECCCCeEEEEEecccCCCCCcEEEEEecCCC-CcCCCEECCEEeeecC-CCcEEEEcHHHee
Confidence 344588999998 654 699999999999999999999999997 9999999999999997 8999999999874
No 101
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.34 E-value=2.5e-12 Score=96.28 Aligned_cols=68 Identities=34% Similarity=0.617 Sum_probs=62.1
Q ss_pred cCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 182 EDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 182 ~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
.+.+++|+. +.. ..+++||+|+++...+.|+|||||++. ||++|+++|++||+|. +.+|.|++++++.
T Consensus 7 ~~~vG~rv~-v~g~~~GtVryvG~~~~~~G~wvGVelDep~-GkndGsv~G~rYF~c~-~~~G~Fv~~~kv~ 75 (84)
T 2cp3_A 7 GLRLGDRVL-VGGTKTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCP-PKFGLFAPIHKVI 75 (84)
T ss_dssp SCCTTCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-CSBSSEETTEESSCCC-TTTEEEEEGGGEE
T ss_pred ccccCCEEE-ECCCCeEEEEEeccCCCCCCeEEEEEeCCCC-CcCCCEECCEEeeecC-CCeEEEEcHHHeE
Confidence 478999998 654 689999999999999999999999986 9999999999999996 8999999999874
No 102
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.34 E-value=3.1e-12 Score=98.97 Aligned_cols=74 Identities=35% Similarity=0.642 Sum_probs=64.8
Q ss_pred ccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363 181 MEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF 257 (421)
Q Consensus 181 ~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~ 257 (421)
..+.+++||. +.. ..+++||+|+++...|.|+|||||+.. ||++|+++|++||+|. +++|.|++++++..-.++
T Consensus 24 ~~~~VG~RV~-V~g~~~GtVryvG~v~~~~G~wvGVElDep~-GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~~~d~ 98 (102)
T 1whh_A 24 AKAEVGDQVL-VAGQKQGIVRFYGKTDFAPGYWYGIELDQPT-GKHDGSVFGVRYFTCA-PRHGVFAPASRIQRIGSG 98 (102)
T ss_dssp CSSCTTSEEE-ETTTEEEEEEEEEECSSSSSEEEEEECSSSC-CSSSSEETTEECSCCC-TTTEEEECGGGEEECCSC
T ss_pred ccCcCCCEEE-ECCCcEEEEEEeeecCCCCCeEEEEEeCCCC-CcCCCEECCEEeeecC-CCcEEEecHHHeEECCCC
Confidence 4488999998 654 699999999999999999999999984 9999999999999996 899999999988533333
No 103
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.34 E-value=2.2e-12 Score=99.41 Aligned_cols=70 Identities=27% Similarity=0.516 Sum_probs=61.9
Q ss_pred cCCCCceEEeec------CceeEEEEecccC---CCCCcEEEEEecCCC--CCCCCCeeCCEEeEecCCCCceeEEecCc
Q psy9363 182 EDDIGLRVCDSE------GHRGTIRYVGSVE---GTQGVWYGIDWDSET--RGKHDGSHNGVKYFWTHSTTSGSFMRRDK 250 (421)
Q Consensus 182 ~~~i~~rv~~l~------~~~~~~r~~G~ip---~~~g~~~gle~d~~~--~g~~~G~~~g~~~f~~~~~~~gsf~~~~~ 250 (421)
.+.+++||. +. ...+++||+|+++ ...|.|+|||||+.. +||++|+++|+|||+|. +++|.|+++++
T Consensus 7 ~~~VG~rV~-V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~-~~~G~Fv~~~~ 84 (95)
T 1whl_A 7 GIDVGCPVK-VQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCD-EDCGVFVALDK 84 (95)
T ss_dssp CCCSSCEEE-EECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCC-TTTEEEECGGG
T ss_pred cCcCCCEEE-EecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecC-CCeEEEEcHHH
Confidence 378999998 52 3689999999998 678999999999996 79999999999999995 89999999998
Q ss_pred ccc
Q psy9363 251 LNF 253 (421)
Q Consensus 251 l~~ 253 (421)
+..
T Consensus 85 v~~ 87 (95)
T 1whl_A 85 LEL 87 (95)
T ss_dssp EEE
T ss_pred eEE
Confidence 753
No 104
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.34 E-value=2.8e-12 Score=98.05 Aligned_cols=70 Identities=37% Similarity=0.662 Sum_probs=62.7
Q ss_pred ccCCCCceEEeec--CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcccc
Q psy9363 181 MEDDIGLRVCDSE--GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNF 253 (421)
Q Consensus 181 ~~~~i~~rv~~l~--~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~ 253 (421)
..+.+++|+. +. ...+++||+|+++...|.|+|||||+. +||++|+++|++||+|. +++|.|++++++..
T Consensus 11 ~~~~vG~rv~-v~~~~~~GtVryvG~~~~~~G~wvGVelDep-~GKndGsv~G~rYF~C~-~~~G~Fvr~~~v~~ 82 (93)
T 1txq_A 11 RPLRVGSRVE-VIGKGHRGTVAYVGATLFATGKWVGVILDEA-KGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQV 82 (93)
T ss_dssp CCCCTTCEEE-ETTTCCEEEEEEEECCSSSSSCEEEEEESSS-CSSBSSEETTEESCCCC-TTCEEEECGGGEEE
T ss_pred ccCCCCCEEE-ECCCCeEEEEEEeeecCCCCCcEEEEEeCCC-CCCCCCEECCEEeeecC-CCeEEEEcHHHeEE
Confidence 3478999998 53 479999999999999999999999997 59999999999999996 89999999998753
No 105
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.33 E-value=1.6e-12 Score=98.83 Aligned_cols=68 Identities=28% Similarity=0.581 Sum_probs=62.4
Q ss_pred cCCCCceEEeec--CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 182 EDDIGLRVCDSE--GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 182 ~~~i~~rv~~l~--~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
.+.+++|+. +. ...+++||+|+++...|.|+|||||++ +||++|+++|++||+|. +.+|.|++++++.
T Consensus 12 ~~~vG~rV~-V~~~~~~GtVryvG~v~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-~~~G~Fvr~~~v~ 81 (91)
T 1whk_A 12 KLHEGSQVL-LTSSNEMATVRYVGPTDFASGIWLGLELRSA-KGKNDGAVGDKRYFTCK-PNYGVLVRPSRVT 81 (91)
T ss_dssp CCCSSCEEE-ESSSCCEEEECCCEECSSSSSEEEEEECSSS-CSSCCSEETTEECCCCS-TTCCCEECGGGEE
T ss_pred cccCCCEEE-ECCCCeEEEEEEeeeCCCCCCeEEEEEeCCC-CCcCCCEECCEEEeecC-CCeEEEEchHHcE
Confidence 478999998 63 589999999999999999999999998 69999999999999996 8999999999874
No 106
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.32 E-value=3.8e-12 Score=98.46 Aligned_cols=70 Identities=34% Similarity=0.600 Sum_probs=63.1
Q ss_pred cccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 180 VMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 180 ~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
...+.+++||. +.. ..+++||+|+++...|.|+|||||+. +||++|+++|++||+|. +.+|.|++++++.
T Consensus 22 ~~~~~vG~RV~-V~g~~~GtVryvG~v~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-p~~G~Fv~~~kv~ 92 (102)
T 1whj_A 22 SLGLKLGDRVV-IAGQKVGTLRFCGTTEFASGQWAGIELDEP-EGKNNGSVGRVQYFKCA-PKYGIFAPLSKIS 92 (102)
T ss_dssp HHTCCTTCEEE-ETTTEEEEEEEEEECSSSCSEEEEEEESSS-CCSBSSEETTEECCCCC-TTTEEEEEGGGEE
T ss_pred hhcCcCCCEEE-ECCCCEEEEEEeeecCCCCCeEEEEEeCCC-CCccCCEECCEEecccC-CCeEEEEeHHHcc
Confidence 34488999998 654 69999999999999999999999998 49999999999999996 8999999999874
No 107
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.32 E-value=3.8e-12 Score=106.83 Aligned_cols=77 Identities=31% Similarity=0.551 Sum_probs=67.6
Q ss_pred ccccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363 179 QVMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF 257 (421)
Q Consensus 179 ~~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~ 257 (421)
.+..+.+|+||. +.. ..+++||+|+++...|.|+|||||+.. ||++|+++|++||+|. +++|.|+++.++..+ +|
T Consensus 35 ~~~~l~VG~RV~-V~g~~~GtVRyvG~v~~~~G~WvGVELDeP~-GKnDGsv~G~rYF~C~-p~~GiFVr~~kV~~~-df 110 (172)
T 2cp6_A 35 GERELKIGDRVL-VGGTKAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI-GF 110 (172)
T ss_dssp CSSCCCSSCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-CSBSSEETTEECCCCC-TTTEEEEEGGGCEEC-CC
T ss_pred CCccCccCCEEE-ECCCceEEEEEeCcCCCCCCcEEEEEecCCC-CccCCEECCEEeeeeC-CCeEEEechHHeEEC-Cc
Confidence 345588999998 654 899999999999999999999999986 9999999999999996 899999999998765 44
Q ss_pred HH
Q psy9363 258 ME 259 (421)
Q Consensus 258 ~~ 259 (421)
++
T Consensus 111 P~ 112 (172)
T 2cp6_A 111 PS 112 (172)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 108
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.31 E-value=3.5e-12 Score=101.65 Aligned_cols=68 Identities=28% Similarity=0.594 Sum_probs=62.9
Q ss_pred cCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 182 EDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 182 ~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
.+.+++||. +.. ..+++||+|+++...|.|+|||||++. ||++|+++|++||+|. +++|.|++++++.
T Consensus 31 ~l~VG~RV~-V~g~~~GtVRyvG~v~~~~G~WvGVELDeP~-GKnDGsv~G~rYF~C~-p~~GiFVr~~kv~ 99 (122)
T 2coz_A 31 DFHIGDRVL-IGNVQPGILRFKGETSFAKGFWAGVELDKPE-GNNNGTYDGIAYFECK-EKHGIFAPPQKIS 99 (122)
T ss_dssp SCCTTEEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSTT-SSBCSEETTEECCCCC-SSCEEEECGGGEE
T ss_pred cCcCCCEEE-ECCCcEEEEEEecccCCCCCeEEEEEeCCCC-CccCCEECCEEeeecC-CCcEEEecHHHCc
Confidence 478999998 654 899999999999999999999999998 9999999999999997 8899999999874
No 109
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.30 E-value=5.7e-12 Score=99.18 Aligned_cols=69 Identities=38% Similarity=0.671 Sum_probs=62.3
Q ss_pred ccCCCCceEEeec--CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 181 MEDDIGLRVCDSE--GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 181 ~~~~i~~rv~~l~--~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
..+.+++||. +. ...+++||+|+++...|.|+|||||+. +||++|+++|++||+|. +++|.|++++++.
T Consensus 32 ~~l~VG~RV~-V~~~g~~GtVRyvG~v~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-p~~GiFVr~~~v~ 102 (112)
T 2coy_A 32 RPLRVGSRVE-VIGKGHRGTVAYVGATLFATGKWVGVILDEA-KGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQ 102 (112)
T ss_dssp CCCCTTCEEE-ETTTCCEEEEEEEECCSSSSSCEEEEEESSS-CSSBSSEETTEECSCCC-TTTEEEECGGGEE
T ss_pred ccCCCCCEEE-ECCCCeEEEEEEeeecCCCCCcEEEEEECCC-CCCCCCEECCEEeeecC-CCeEEEEchHHeE
Confidence 3478999998 53 479999999999999999999999997 59999999999999996 8999999999875
No 110
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.29 E-value=6.1e-12 Score=102.44 Aligned_cols=70 Identities=37% Similarity=0.617 Sum_probs=63.4
Q ss_pred cCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363 182 EDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG 254 (421)
Q Consensus 182 ~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g 254 (421)
.+.+++||. +.. ..+++||+|+++...|.|+|||||+. +||++|+++|++||+|. +.+|.|++++++..+
T Consensus 64 ~l~VG~RV~-V~G~~~GtVRyvG~v~~~~G~WvGVELDeP-~GKnDGsv~G~rYF~C~-p~~GiFVrp~kv~~~ 134 (141)
T 2cp5_A 64 DFRVGERVW-VNGNKPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRK 134 (141)
T ss_dssp CCCTTCEEE-ETTSCEEEEEEEEECSSSSSEEEEEEESSS-CCSCBSEETTEESSCCC-TTTEEEECGGGEESS
T ss_pred cCcCCCEEE-ECCCcEEEEEEeeecCCCCCcEEEEEeCCC-CCccCCEECCEEeeecC-CCcEEEechHHeeec
Confidence 378999998 654 69999999999999999999999998 59999999999999996 899999999988544
No 111
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.28 E-value=8.3e-12 Score=96.19 Aligned_cols=67 Identities=31% Similarity=0.587 Sum_probs=62.0
Q ss_pred CCCCceEEeec-CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363 183 DDIGLRVCDSE-GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252 (421)
Q Consensus 183 ~~i~~rv~~l~-~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~ 252 (421)
+.+++||. +. ...+++||+|+++...+.|+|||||+.. ||++|+++|++||+|. +++|.|++++++.
T Consensus 24 l~vG~rV~-V~g~~~GtVryvG~~~~~~G~wvGVElDep~-GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~ 91 (100)
T 2cow_A 24 LREGEFVT-VGAHKTGVVRYVGPADFQEGTWVGVELDLPS-GKNDGSIGGKQYFRCN-PGYGLLVRPSRVR 91 (100)
T ss_dssp CCTTCEEE-CSSSCEEEEEEEECCSSSSSCEEEEECSSSC-CSCSSEETTEECCCSC-TTCCEEECGGGCE
T ss_pred ccCCCEEE-ECCCcEEEEEEeeeCCCCCCeEEEEEeCCCC-CcCCCEECCEEeeecC-CCeEEEecHHHee
Confidence 78999998 65 4899999999999999999999999995 9999999999999996 8999999999874
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=1.2e-11 Score=127.43 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=37.9
Q ss_pred CCccEEEeeCcccc-hhhHHH-HhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363 324 GHIHTLTLGNMGYI-WADILK-LLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGS 394 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~-~~~i~~-~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 394 (421)
++|+.|+|++|.|+ ++.+.. .....+. +.|+|++|+|+.||..+..+++|+.|+|++|.|+. ..+..++.
T Consensus 180 ~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~ 252 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS-RIRESLSQ 252 (571)
T ss_dssp TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH-HHHHHHHH
T ss_pred CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC-cCHHHHHH
Confidence 46677777777766 322111 1111233 56777777777776655557777777777777743 22334443
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=2.7e-11 Score=111.78 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=39.4
Q ss_pred hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
.+..+ ++|++|+|++|.|+ .+. ..+..+++ ++|+|++|+|+.+++. +..+++|+.|+|++|+++..+ +..+.
T Consensus 102 ~~~~l--~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~ 176 (251)
T 3m19_A 102 VFDHL--TQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFD 176 (251)
T ss_dssp TTTTC--TTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTT
T ss_pred Hhccc--CCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHh
Confidence 34444 45555555555444 111 22333444 4555555555444432 244445555555555554332 23344
Q ss_pred ccccccccccccccCc
Q psy9363 394 SLPNLKYLNLASTNLR 409 (421)
Q Consensus 394 ~l~~L~~L~Ls~N~l~ 409 (421)
.+++|+.|+|++|+++
T Consensus 177 ~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 177 RLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCTTCCEEECCSCCBC
T ss_pred CCCCCCEEEeeCCcee
Confidence 4455555555555443
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=1.1e-11 Score=128.25 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=52.3
Q ss_pred HHhhhCCCCcEEECCCC-CCCChhhHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhccccccCCcchhh
Q psy9363 14 EIEQAVPFIEDLDLSRN-LLASWFAVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHLGRTLCDEDFVK 88 (421)
Q Consensus 14 ~~~~~~~~L~~L~Ls~N-~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L~~~~~~~~~~~ 88 (421)
.+.+.|++|++|+|++| .+++ ..++.++.++++|++|+| .|.++... ++.....+++|++|+|+.|...-....
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred HHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 33334555555555555 3332 224444445555555555 34443211 111222445666666654431111223
Q ss_pred HHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceecc
Q psy9363 89 EGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN 133 (421)
Q Consensus 89 ~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln 133 (421)
+..+...+++|++|++++|.- -...+..+.++++|+.|+
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~------~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVP------LEKLATLLQRAPQLEELG 241 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSC------HHHHHHHHHHCTTCSEEE
T ss_pred HHHHHHhCCCCcEEecCCCCc------HHHHHHHHhcCCcceEcc
Confidence 333345677777777777731 011334455555555554
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.24 E-value=2.4e-12 Score=133.31 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=87.0
Q ss_pred hHHhhhCCCCcEEECCCCCCCChhhHHHHHhc-CCC-Cceeec-ccc-cCCCCCCcccccccccchhccccccCCcc-hh
Q psy9363 13 DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQ-LKH-LRHLNL-RIR-LKSSSAPAHSYLAEVVFFVHLGRTLCDED-FV 87 (421)
Q Consensus 13 ~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~-l~~-L~~L~L-~N~-l~~~~~p~~~~~~~~L~~L~L~~~~~~~~-~~ 87 (421)
..+...|++|++|+|++|.++ +..+..+.. +++ |++|+| .+. +....++.....+++|++|+|++|.+++. ..
T Consensus 105 ~~l~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 105 TEISNNLRQLKSVHFRRMIVS--DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred HHHHhhCCCCCeEEeeccEec--HHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence 455668999999999999998 444555555 455 999999 454 33112333344789999999988766443 12
Q ss_pred hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363 88 KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE 138 (421)
Q Consensus 88 ~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~ 138 (421)
.+..++..+++|++|++++|.+.... ....+..+.++++|+.|+++...
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKIS--PKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCC--HHHHHHHHHHCTTCCEEECSSCB
T ss_pred HHHHHHhcCCCccEEEeeccCCCccC--HHHHHHHHhhCCCCcEEeccCcc
Confidence 24445778999999999999985322 23455678899999999998643
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=3.8e-12 Score=109.97 Aligned_cols=119 Identities=22% Similarity=0.114 Sum_probs=88.8
Q ss_pred hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363 17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY 95 (421)
Q Consensus 17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~ 95 (421)
..+++|++|+|++|.|+++ ..+..+++|++|+| +|++.. .+|...+.+++|++|+|++|.+++-. .+.. +..
T Consensus 46 ~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~-l~~ 118 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLKDIS-TLEP-LKK 118 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCCSSG-GGGG-GSS
T ss_pred HhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccCcch-hHHH-Hhc
Confidence 4578899999999988865 45677889999999 588883 46666666889999999877764422 1112 677
Q ss_pred CCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhcc
Q psy9363 96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGS 145 (421)
Q Consensus 96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~a 145 (421)
+++|++|++++|++... ..++...++.+++|+.||++.+...++.++
T Consensus 119 l~~L~~L~l~~N~l~~~---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 119 LECLKSLDLFNCEVTNL---NDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CSCCCEEECCSSGGGTS---TTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCCCCEEEeeCCcCcch---HHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 89999999999998544 245556888999999999988776666444
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=3.8e-11 Score=109.36 Aligned_cols=123 Identities=14% Similarity=0.083 Sum_probs=87.1
Q ss_pred eeecCceeEeecccchhhhhCCCccCCCC---CCC-chhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEcc
Q psy9363 283 ASINAPFLELVGFDQVHEEQNTNKLPIPN---DTS-GVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLP 356 (421)
Q Consensus 283 ~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~-~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~ 356 (421)
+.++.+.+..+....+....+|+.+.|++ ..+ +..+..+ ++|+.|+|++|.|+ .+ +..+..+++ ++|+|+
T Consensus 45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l--~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL--TQLTVLDLGTNQLTVLP--SAVFDRLVHLKELFMC 120 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECC
T ss_pred EEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC--CCcCEEECCCCcCCccC--hhHhCcchhhCeEecc
Confidence 44444444433323232323666666665 333 3456788 88999999999888 22 244567788 899999
Q ss_pred CCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363 357 SNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 357 ~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
+|+|+.+|..+..+++|+.|+|++|+|+.++ ...+..+++|+.|+|++|++..
T Consensus 121 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 121 CNKLTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCccC
Confidence 9999988877788889999999999987765 4567888899999999998763
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=3.7e-11 Score=108.70 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=81.2
Q ss_pred eeeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEc
Q psy9363 282 KASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKL 355 (421)
Q Consensus 282 ~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L 355 (421)
.+.++.+.+..+....+....+|+.+++++ +..|..+..+ ++|++|+|++|.|+ .+. ..+..+++ ++|+|
T Consensus 36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL--RSLNSLVLYGNKITELPK--SLFEGLFSLQLLLL 111 (220)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC--SSCCEEECCSSCCCCCCT--TTTTTCTTCCEEEC
T ss_pred EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC--cCCCEEECCCCcCCccCH--hHccCCCCCCEEEC
Confidence 344445444444333333333666666665 3335667777 88888888888887 322 34566777 88888
Q ss_pred cCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 356 PSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 356 ~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
++|+|+.+++. +..+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcC
Confidence 88888876543 467788888888888887655 456777888888888888774
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=2.4e-11 Score=102.69 Aligned_cols=109 Identities=19% Similarity=0.130 Sum_probs=65.0
Q ss_pred hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363 17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY 95 (421)
Q Consensus 17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~ 95 (421)
..+++|++|+|++|.|+++ ..++.+++|++|+| +|+++ ..+|...+.+++|++|+|++|.+++- +.... +..
T Consensus 39 ~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ls~N~i~~~-~~~~~-~~~ 111 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDL-STIEP-LKK 111 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCC-SCTHHHHHHCTTCCEEECTTSCCCSH-HHHGG-GGG
T ss_pred hhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCccc-chHHHHhhhCCCCCEEECCCCcCCCh-HHHHH-Hhh
Confidence 3466777777777777654 34556677777777 46666 23555555566777777766655331 11111 556
Q ss_pred CCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
+++|++|++++|++... ..++...++.+++|+.||++
T Consensus 112 l~~L~~L~l~~N~l~~~---~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 112 LENLKSLDLFNCEVTNL---NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTCGGGGS---TTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEeCcCCcccch---HHHHHHHHHHCCCcccccCC
Confidence 77777777777776433 23344566777777777664
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=1.5e-10 Score=120.20 Aligned_cols=98 Identities=18% Similarity=0.111 Sum_probs=77.5
Q ss_pred hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363 18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL 96 (421)
Q Consensus 18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l 96 (421)
.+++|+.|+|++|.|++++. ++.|++|+.|+| +|++.. ++. +..+++|+.|+|++|.+... +. +..+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l-~~----l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKDL-SS----LKDL 108 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT----GGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCC-TT----STTC
T ss_pred cCCCCCEEECcCCCCCCChH----HccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCCC-hh----hccC
Confidence 46899999999999997643 678999999999 598883 333 67899999999998877543 22 6789
Q ss_pred CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
++|+.|+|++|.+... ..++.+++|+.|+++
T Consensus 109 ~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--------NGLVHLPQLESLYLG 139 (605)
T ss_dssp TTCCEEECTTSCCCCC--------GGGGGCTTCSEEECC
T ss_pred CCCCEEEecCCCCCCC--------ccccCCCccCEEECC
Confidence 9999999999998542 236677777777664
No 121
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.17 E-value=8.2e-11 Score=108.49 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=96.9
Q ss_pred eeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccC
Q psy9363 283 ASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPS 357 (421)
Q Consensus 283 ~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~ 357 (421)
+.++...+..+....+....+|+.+++++ +..+..+..+ ++|++|+|++|.|+ ...+..+..+++ ++|+|++
T Consensus 40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--TELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC--CcCCEEECCCCccc-ccChhHhcccCCCCEEEcCC
Confidence 34444444433333333333677777765 4456668899 99999999999998 111245677889 9999999
Q ss_pred CcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363 358 NRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 358 N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
|+|+.++... ..+++|+.|+|++|+|+.++ +..++.+++|+.|+|++|+|+.++.
T Consensus 117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccCH
Confidence 9999988765 78999999999999998765 4578899999999999999998664
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=1.4e-11 Score=109.44 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=89.8
Q ss_pred HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcc-------
Q psy9363 14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDED------- 85 (421)
Q Consensus 14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~------- 85 (421)
.+. .+++|++|+|++|.|+.++ .+..+++|++|+| +|++. .+|...+.+++|++|+|++|.+++-
T Consensus 43 ~~~-~l~~L~~L~ls~n~l~~l~----~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~ 115 (198)
T 1ds9_A 43 TLS-TLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLV 115 (198)
T ss_dssp HHH-HTTTCSEEECSEEEESCCC----CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred HHh-cCCCCCEEECCCCCCcccc----ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence 444 5788999999999888643 4566888888888 58777 4565555556677776655543221
Q ss_pred --------------hhhHHHHHhhCCCCceeeecCCCCCCcccc----chhHHHHHHhccCceeccCCccChhhhhccH
Q psy9363 86 --------------FVKEGSLLHYLPKLSSLRFTKNPILAEERV----VSSREKTIARLGGLKLLNGSAIERQERQGSE 146 (421)
Q Consensus 86 --------------~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~----~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae 146 (421)
+..+.. +..+++|++|++++|++...... ..++..++..+++|+.||+..|++.||.+|+
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~a~ 193 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQAN 193 (198)
T ss_dssp HSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTHHH
T ss_pred CCCEEECCCCcCCchhHHHH-HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHHHH
Confidence 122222 77899999999999998554322 4566778999999999999999999998774
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.15 E-value=5e-11 Score=107.84 Aligned_cols=108 Identities=21% Similarity=0.199 Sum_probs=88.9
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L 376 (421)
+++.+.+++ +..+..+..+ ++|+.|+|++|.|+ ...+..+..+++ ++|+|++|+|+.+|... ..+++|+.|
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPY--KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTC--TTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCCcCHhHhhCC--CCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 455565554 3334568889 99999999999998 212356778899 99999999999998765 789999999
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCcccCCC
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p 414 (421)
+|++|+|+.+. +..+..+++|+.|+|++|+|+.++..
T Consensus 110 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 110 LLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECHH
Confidence 99999998765 67899999999999999999987643
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.15 E-value=1.2e-11 Score=119.92 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=54.0
Q ss_pred CCccEEEee-Ccccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCC-CCCCCCcccccCcccccc
Q psy9363 324 GHIHTLTLG-NMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQEN-NIVDWGEVNALGSLPNLK 399 (421)
Q Consensus 324 ~~L~~L~Ls-~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~ 399 (421)
.+|+.|+++ +|.++ .+. ..+..+++ ++|+|++|+|+.+|. ..+.+|+.|.+.++ .++.+ ..+..+++|+
T Consensus 177 ~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~l---P~l~~l~~L~ 249 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKL---PTLEKLVALM 249 (350)
T ss_dssp EEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCC---CCTTTCCSCC
T ss_pred cchhHHhhccCCcccCCCH--HHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcC---CCchhCcChh
Confidence 678888887 46676 322 44567788 899999999998875 34677777776444 34443 3577788888
Q ss_pred cccccccc
Q psy9363 400 YLNLASTN 407 (421)
Q Consensus 400 ~L~Ls~N~ 407 (421)
.++++++.
T Consensus 250 ~l~l~~~~ 257 (350)
T 4ay9_X 250 EASLTYPS 257 (350)
T ss_dssp EEECSCHH
T ss_pred hCcCCCCc
Confidence 88887643
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=8.6e-11 Score=106.31 Aligned_cols=103 Identities=23% Similarity=0.196 Sum_probs=82.9
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCC-CCCCCCCCcEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDS-VPGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~~~l~~L~~L 376 (421)
+|+.+.+++ +..+..+..+ ++|++|+|++|.|+ ...+..+..+++ ++|+|++|+|+.+++ .+..+++|+.|
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGA--SGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCEEECCCCcCCEECHHHhCCC--CCCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 677777765 3334568888 99999999999998 212245677888 999999999998754 45888999999
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
+|++|+|+... +..+..+++|+.|+|++|++.
T Consensus 135 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 135 SLYDNQITTVA-PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCc
Confidence 99999997765 568889999999999999986
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.11 E-value=6.2e-12 Score=130.18 Aligned_cols=119 Identities=16% Similarity=0.127 Sum_probs=66.6
Q ss_pred HHhhhCCCCcEEECCCCCCCChhhHHHHHh-cCCCCceeec-cc-ccCCCCCCcccccccccchhccccccCCcc-hhhH
Q psy9363 14 EIEQAVPFIEDLDLSRNLLASWFAVGEITC-QLKHLRHLNL-RI-RLKSSSAPAHSYLAEVVFFVHLGRTLCDED-FVKE 89 (421)
Q Consensus 14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~-~l~~L~~L~L-~N-~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~-~~~~ 89 (421)
.+...|++|++|+|++|.++ +..+..+. .+++|++|+| ++ .+....++.....+++|++|+|++|.+++. ...+
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred HHHHhCCCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 34556777777777777776 33333333 5777777777 34 443212333344567777777766544322 2222
Q ss_pred HHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363 90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI 137 (421)
Q Consensus 90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i 137 (421)
..+...+++|++|++++|. ... ........+.++++|+.|+++..
T Consensus 177 ~~~~~~~~~L~~L~l~~~~-~~~--~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA-SEV--SFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC-SCC--CHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHhhcCCcCcEEEecccC-CcC--CHHHHHHHHHhCCCCcEEecCCC
Confidence 2323456777777777775 111 11223344566788888877643
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=2.3e-10 Score=104.06 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=87.5
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE 375 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~ 375 (421)
+|+.+.+++ +..+..+..+ ++|+.|+|++|.|+ .+. ..+..+++ +.|+|++|+|+.++... ..+++|+.
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~N~l~~i~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSL--INLKELYLGSNQLGALPV--GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEEcCCCccCccCHHHhhCc--cCCcEEECCCCCCCCcCh--hhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 556666655 5557778899 99999999999998 322 45677899 99999999999988764 78999999
Q ss_pred EECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363 376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
|+|++|+|+.+ +..+..+++|+.|+|++|+|+.++.
T Consensus 117 L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 117 LFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp EECCSSCCCSC--CTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred EeccCCccccc--CcccccCCCCCEEECCCCcCCccCH
Confidence 99999999865 4577899999999999999998664
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=2e-11 Score=103.12 Aligned_cols=95 Identities=25% Similarity=0.326 Sum_probs=70.3
Q ss_pred CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcc-cCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363 313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITT-LDSVPGMFSSLEELYLQENNIVDWGEVN 390 (421)
Q Consensus 313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 390 (421)
.+|..+..+ ++|+.|++++|.++. . ..+..+++ ++|+|++|+++. +|.....+++|+.|++++|.++.++.+.
T Consensus 33 ~~~~~~~~l--~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~ 107 (149)
T 2je0_A 33 KLEGLTDEF--EELEFLSTINVGLTS-I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107 (149)
T ss_dssp BCCSCCTTC--TTCCEEECTTSCCCC-C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHG
T ss_pred HHHHHHhhc--CCCcEEECcCCCCCC-c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHH
Confidence 456666777 888888888888871 1 44566777 888888888886 5443356788888888888886654446
Q ss_pred ccCccccccccccccccCcccC
Q psy9363 391 ALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 391 ~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
.++.+++|+.|++++|++++++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGST
T ss_pred HHhhCCCCCEEeCcCCcccchH
Confidence 7778888888888888888754
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=1.7e-10 Score=102.13 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEE
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L 376 (421)
+++.+.+++ ..+|..+..+ ++|+.|+|++|.|+ .. +..+..+++ ++|+|++|+|+.+++. +..+++|+.|
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l--~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNY--KHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCchhHHHhhcc--cCCCEEECCCCcCCEeC--HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 445555554 4567788899 99999999999998 32 245677888 9999999999988864 4889999999
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
+|++|+|+.++ ...+..+++|+.|+|++|++.
T Consensus 108 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 108 SLHGNDISVVP-EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence 99999998765 456888999999999999984
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=7.6e-11 Score=101.65 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=83.1
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccC--CCCCCCCCCcEE
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLD--SVPGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~--~~~~~l~~L~~L 376 (421)
+|+.+.+++ ..+ ..+..+ ++|+.|+|++|.++ ..++..+..+++ ++|+|++|.|+.++ ..+..+++|+.|
T Consensus 50 ~L~~L~l~~n~l~~~-~~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 50 NLEFLSLINVGLISV-SNLPKL--PKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GCCEEEEESSCCCCC-SSCCCC--SSCCEEEEESCCCC-SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCEEeCcCCCCCCh-hhhccC--CCCCEEECcCCcCc-hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 667776665 233 566778 89999999999998 224466667888 99999999999876 445888999999
Q ss_pred ECcCCCCCCCCc--ccccCccccccccccccccCcccCC
Q psy9363 377 YLQENNIVDWGE--VNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 377 ~Ls~N~l~~~~~--~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
++++|.++..+. ...+..+++|+.|++++|.+..++.
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 999999977542 1367889999999999999987654
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=3.2e-10 Score=101.25 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=73.2
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE 375 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~ 375 (421)
+|+.+++++ +..+..+..+ ++|++|+|++|.++ .+ +..+..+++ ++|+|++|+|+.++... ..+++|+.
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKL--TSLTYLNLSTNQLQSLP--NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcEEECCCCccCccChhhcCCC--CCcCEEECCCCcCCccC--HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 566666654 3334456777 88888888888887 22 134566777 88888888888777653 67888888
Q ss_pred EECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363 376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
|+|++|+++.++ ...+..+++|+.|++++|++..
T Consensus 129 L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 129 LRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp EECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCC
T ss_pred EECCCCccceeC-HHHhccCCCccEEEecCCCeec
Confidence 888888886654 3456778888888888887764
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=1e-10 Score=101.88 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=38.2
Q ss_pred CccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363 325 HIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401 (421)
Q Consensus 325 ~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 401 (421)
+|+.|+|++|.|+ . ..+..+++ ++|+|++|+|+.+|+.. ..+++|+.|+|++|+|..++.+..++.+++|+.|
T Consensus 43 ~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence 4555555555554 1 12333444 55555555555444333 4445555555555555443322244444555555
Q ss_pred ccccccCcc
Q psy9363 402 NLASTNLRN 410 (421)
Q Consensus 402 ~Ls~N~l~~ 410 (421)
++++|+++.
T Consensus 119 ~l~~N~i~~ 127 (176)
T 1a9n_A 119 CILRNPVTN 127 (176)
T ss_dssp ECCSSGGGG
T ss_pred EecCCCCCC
Confidence 555555543
No 133
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=1.5e-10 Score=108.04 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=56.6
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCC-CCCCCCCCcEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDS-VPGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~~~l~~L~~L 376 (421)
+|+.+++++ +..+..+..+ ++|++|+|++|.++ ...+..+..+++ ++|++++|.++.++. .+..+++|++|
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTC--TTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCcEEECCCCcCCccCHHHccCC--cCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 455555543 1122345555 66666666666665 111133445555 666666666665544 23555666666
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i 411 (421)
++++|.++.+..+..++.+++|++|++++|+++.+
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 66666665544344555566666666666666554
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.08 E-value=3.8e-10 Score=100.77 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=85.6
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE 375 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~ 375 (421)
+++.+++++ +..+..+..+ ++|++|+|++|.++ .+ +..+..+++ ++|+|++|+|+.++... ..+++|+.
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDEL--TSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTC--TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcEEEcCCCccCcCChhhhccc--ccCcEEECCCCccCccC--hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 444555544 3445567889 99999999999998 32 244577888 99999999999988764 78999999
Q ss_pred EECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363 376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
|+|++|+|+.++ ...+..+++|+.|++++|++++++.
T Consensus 105 L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 105 LALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp EECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCH
Confidence 999999998765 4568899999999999999997654
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.08 E-value=1.6e-10 Score=119.14 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=58.8
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
.+|+.|+|++|.|+++ |..+ +++|++|+| +|+++ .+| +.+++|++|+|++|.+++ ++.+ ..+
T Consensus 59 ~~L~~L~Ls~n~L~~l---p~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~l------~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL---PDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLST-LPEL------PAS 121 (571)
T ss_dssp TTCSEEECCSSCCSCC---CSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCCC------CTT
T ss_pred CCccEEEeCCCCCCcc---CHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCC-cchh------hcC
Confidence 4899999999999854 4422 488999999 59888 466 467999999999887755 3332 229
Q ss_pred CceeeecCCCCCC
Q psy9363 99 LSSLRFTKNPILA 111 (421)
Q Consensus 99 L~~L~l~~N~l~~ 111 (421)
|++|+|++|.+..
T Consensus 122 L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 122 LKHLDVDNNQLTM 134 (571)
T ss_dssp CCEEECCSSCCSC
T ss_pred CCEEECCCCcCCC
Confidence 9999999999854
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=1.4e-10 Score=102.65 Aligned_cols=90 Identities=21% Similarity=0.145 Sum_probs=76.3
Q ss_pred hhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGS 394 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 394 (421)
.+..+ ++|+.|+|++|.|+ ...+..+..+++ ++|+|++|+|+.+++. +..+++|+.|+|++|+|+... +..+..
T Consensus 49 ~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~ 124 (192)
T 1w8a_A 49 LFGRL--PHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEH 124 (192)
T ss_dssp SGGGC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTT
T ss_pred ccccC--CCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhc
Confidence 47889 99999999999998 222356777888 9999999999988765 478999999999999997654 667889
Q ss_pred cccccccccccccCcc
Q psy9363 395 LPNLKYLNLASTNLRN 410 (421)
Q Consensus 395 l~~L~~L~Ls~N~l~~ 410 (421)
+++|+.|+|++|+++.
T Consensus 125 l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNC 140 (192)
T ss_dssp CTTCCEEECTTCCBCC
T ss_pred CCCCCEEEeCCCCccC
Confidence 9999999999999874
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=2.9e-10 Score=110.73 Aligned_cols=125 Identities=21% Similarity=0.253 Sum_probs=90.2
Q ss_pred eeecCceeEeecccchh-hhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEc
Q psy9363 283 ASINAPFLELVGFDQVH-EEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKL 355 (421)
Q Consensus 283 ~~~~~~~~e~~g~~~l~-~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L 355 (421)
+.++.+.+..+....+. ...+|+.|.|++ +..+..+..+ ++|++|+|++|.|+ .. +..+..+++ +.|+|
T Consensus 44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l--~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV--PNLRYLDLSSNHLHTLD--EFLFSDLQALEVLLL 119 (361)
T ss_dssp EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEEC
T ss_pred EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC--CCCCEEECCCCcCCcCC--HHHhCCCcCCCEEEC
Confidence 44555555544433333 222677777765 3334568888 99999999999998 32 145677888 99999
Q ss_pred cCCcCcccCC-CCCCCCCCcEEECcCCCCCCCCccccc---CccccccccccccccCcccC
Q psy9363 356 PSNRITTLDS-VPGMFSSLEELYLQENNIVDWGEVNAL---GSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 356 ~~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l---~~l~~L~~L~Ls~N~l~~i~ 412 (421)
++|+|+.+++ .+..+++|+.|+|++|+|+.++ ...+ ..+++|+.|+|++|+|+.++
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCCccC
Confidence 9999998754 4588899999999999998765 3344 56899999999999998765
No 138
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.04 E-value=2.6e-10 Score=101.09 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCc-CcccCCCCCCCCCCcEE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNR-ITTLDSVPGMFSSLEEL 376 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~-l~~l~~~~~~l~~L~~L 376 (421)
+|+.+.+++ +..+..+..+ ++|++|+|++|.++ ...+..+..+++ ++|+|++|+ ++.++ .+..+++|+.|
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGL--TSLTLLDISHSAHD-DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTC--TTCCEEECCSSBCB-GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred CCCEEEeECCccCcccChhhcCC--CCCCEEEecCCccC-cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 566666554 2235556777 88888888888887 333455667788 888888887 77776 46778888888
Q ss_pred ECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
++++|.+++++ .+..+++|+.|++++|+|.+
T Consensus 165 ~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 165 NIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred ECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence 88888886643 57778888888888888765
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=4.9e-10 Score=97.43 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=82.1
Q ss_pred CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363 303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE 375 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~ 375 (421)
+++.+.+++ +..+..+..+ ++|++|+|++|.|+ .+ +..+..+++ ++|+|++|+|+.++... ..+++|+.
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKL--TQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTC--TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcEEEeCCCcccEeCHHHhcCc--ccccEEECCCCcceEeC--hhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 444555543 3344567888 99999999999998 32 244567888 99999999999888754 78999999
Q ss_pred EECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363 376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
|+|++|+++.++ ...+..+++|+.|++++|++..
T Consensus 105 L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 105 LALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred EECcCCcceEeC-HHHhcCCcccCEEEecCCCeec
Confidence 999999998765 4457889999999999999875
No 140
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.04 E-value=4.4e-10 Score=101.61 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=80.9
Q ss_pred hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccccc
Q psy9363 316 VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNAL 392 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l 392 (421)
..+..+ ++|+.|+|++|.|+ .. +..+..+++ ++|+|++|+|+.+++. +..+++|+.|+|++|+|+.+. +..+
T Consensus 51 ~~~~~l--~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~ 125 (220)
T 2v70_A 51 GIFKKL--PQLRKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG-NDSF 125 (220)
T ss_dssp CCGGGC--TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-TTSS
T ss_pred hhhccC--CCCCEEECCCCcCCEEC--HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC-HhHc
Confidence 457899 99999999999998 32 245778889 9999999999988865 488999999999999997765 6688
Q ss_pred CccccccccccccccCcccCCC
Q psy9363 393 GSLPNLKYLNLASTNLRNIKLN 414 (421)
Q Consensus 393 ~~l~~L~~L~Ls~N~l~~i~~p 414 (421)
..+++|+.|+|++|+|+.+...
T Consensus 126 ~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp TTCTTCSEEECTTSCCCCBCTT
T ss_pred CCCccCCEEECCCCcCCEECHH
Confidence 9999999999999999987543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=3.9e-10 Score=97.69 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 401 (421)
++|+.|+|++|.|+ .-.+..+..+++ ++|+|++|+|+.+++.. ..+++|+.|+|++|+|+.++ +..+..+++|+.|
T Consensus 30 ~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEE
Confidence 78899999999998 112355677888 99999999999888765 78899999999999997765 4568889999999
Q ss_pred ccccccCcc
Q psy9363 402 NLASTNLRN 410 (421)
Q Consensus 402 ~Ls~N~l~~ 410 (421)
+|++|+++-
T Consensus 108 ~L~~N~~~c 116 (170)
T 3g39_A 108 WLLNNPWDC 116 (170)
T ss_dssp ECCSSCBCT
T ss_pred EeCCCCCCC
Confidence 999998864
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.00 E-value=2.5e-10 Score=110.66 Aligned_cols=84 Identities=20% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEcc-CCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLP-SNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~-~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 400 (421)
..++.|+|++|.|+ .++......++ ++|+++ +|.++.||... ..+++|+.|||++|+|+.++ ...+.++++|+.
T Consensus 154 ~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-~~~~~~L~~L~~ 230 (350)
T 4ay9_X 154 FESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-SYGLENLKKLRA 230 (350)
T ss_dssp SSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-SSSCTTCCEEEC
T ss_pred hhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-hhhhccchHhhh
Confidence 56899999999998 12222334456 889997 68999999765 88999999999999999876 456777777777
Q ss_pred cccccccCcccC
Q psy9363 401 LNLASTNLRNIK 412 (421)
Q Consensus 401 L~Ls~N~l~~i~ 412 (421)
+++ +.++.++
T Consensus 231 l~~--~~l~~lP 240 (350)
T 4ay9_X 231 RST--YNLKKLP 240 (350)
T ss_dssp TTC--TTCCCCC
T ss_pred ccC--CCcCcCC
Confidence 665 4466554
No 143
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=98.98 E-value=1.6e-09 Score=81.22 Aligned_cols=67 Identities=24% Similarity=0.472 Sum_probs=57.8
Q ss_pred cCCCCceEEeec--C--ceeEEEEecccCCC--CCcEEEEEecCCCCCCCCCeeCCEEeE-ecCCCCceeEEecCcc
Q psy9363 182 EDDIGLRVCDSE--G--HRGTIRYVGSVEGT--QGVWYGIDWDSETRGKHDGSHNGVKYF-WTHSTTSGSFMRRDKL 251 (421)
Q Consensus 182 ~~~i~~rv~~l~--~--~~~~~r~~G~ip~~--~g~~~gle~d~~~~g~~~G~~~g~~~f-~~~~~~~gsf~~~~~l 251 (421)
.+.+++|+. +. . .++++||+|.+|.. .+.|+||++|++. ||++|+++|+||| .|. +.++.|+.+..+
T Consensus 9 ~i~VG~Rc~-V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~-GknDGsv~G~ryF~~c~-~~~g~fV~~~d~ 82 (92)
T 1whm_A 9 PLEINSRVS-LKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPI-GNWDGRFDGVQLCSFAC-VESTILLHINDI 82 (92)
T ss_dssp SSCTTCEEE-EEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSC-CCCCSEETTEESCSSCC-TTTEEEEEGGGE
T ss_pred CccccCeEE-EcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCC-CCCCCeECCEEeccccC-CCcceEcccccC
Confidence 367999987 43 2 78999999999864 5899999999998 9999999999999 664 899999998765
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.98 E-value=4.7e-10 Score=115.78 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=89.1
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEEC
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYL 378 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~L 378 (421)
.|+.+.+++ ..+|. +..+ ++|+.|+|++|.|+ .+|..+..+++ +.|+|++|+|+++| .+..+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l--~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQL--LLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGG--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcC-cccc--ccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 456677765 45666 8899 99999999999998 34456788999 99999999999998 6899999999999
Q ss_pred cCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363 379 QENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 379 s~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
++|+|+....+..++.+++|+.|+|++|+|++++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 9999977643668999999999999999999854
No 145
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=4.3e-10 Score=99.72 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=91.7
Q ss_pred cceeeeeecCceeEeecccchhhhhCCCccCCCC--CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEE
Q psy9363 278 VEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN--DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLK 354 (421)
Q Consensus 278 ~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~--~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~ 354 (421)
.....+.+++..+..+ ..+....+|+.+.+++ ......+..+ ++|++|++++|.++ ...+..+..+++ ++|+
T Consensus 44 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~n~~~~~~~l~~l--~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPISGL--SNLERLRIMGKDVT-SDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCSCC--TTGGGCTTCSEEEEESCCCSCCGGGTTC--TTCCEEEEECTTCB-GGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCccCh--HHHhcCCCCCEEEccCCCCCcchhhhcC--CCCCEEEeECCccC-cccChhhcCCCCCCEEE
Confidence 3445555555544422 2232223777777765 2233467788 99999999999998 222345667888 9999
Q ss_pred ccCCcCcc-cCCCCCCCCCCcEEECcCCC-CCCCCcccccCccccccccccccccCcccC
Q psy9363 355 LPSNRITT-LDSVPGMFSSLEELYLQENN-IVDWGEVNALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 355 L~~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
|++|+++. .+..+..+++|+.|++++|. +.+++ .+..+++|+.|++++|++++++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH
Confidence 99999986 44445889999999999998 76643 6888999999999999999864
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.96 E-value=4e-10 Score=104.58 Aligned_cols=113 Identities=19% Similarity=0.118 Sum_probs=85.8
Q ss_pred EECCCCCCCChhhHHHHH-hcCCCCceeec-ccccCCC-CCCcccccccccchhccccccCCcchhhHHHHHhhCCCCce
Q psy9363 25 LDLSRNLLASWFAVGEIT-CQLKHLRHLNL-RIRLKSS-SAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSS 101 (421)
Q Consensus 25 L~Ls~N~ls~~~~i~~~~-~~l~~L~~L~L-~N~l~~~-~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L~~ 101 (421)
++++.|....+..+.+++ .++|+|+.|+| +|++++. .+|.....+++|+.|+|++|.+++ +.++.. +..+ +|++
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~~l~~-l~~l-~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDK-IKGL-KLEE 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GGGGGG-GTTS-CCSE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-chhhhh-cccC-Ccce
Confidence 677788766665555555 57999999999 5888842 345556688999999998887743 344444 4445 9999
Q ss_pred eeecCCCCCCccc-cchhHHHHHHhccCceeccCCccChh
Q psy9363 102 LRFTKNPILAEER-VVSSREKTIARLGGLKLLNGSAIERQ 140 (421)
Q Consensus 102 L~l~~N~l~~~~~-~~~~~~~~i~~l~~L~~ln~s~i~~~ 140 (421)
|+|++||++.... .+.||..+++.+|+|+.||+..|++.
T Consensus 225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p~ 264 (267)
T 3rw6_A 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPP 264 (267)
T ss_dssp EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCCC
T ss_pred EEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCCC
Confidence 9999999976432 35788999999999999999988763
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=96.10 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=76.8
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 401 (421)
++|+.|+|++|.|+ .++..+..+++ +.|+|++|+|+.+++. +..+++|+.|+|++|+|+.++ +..+..+++|+.|
T Consensus 31 ~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence 78999999999998 23356778899 9999999999998764 588999999999999998876 5679999999999
Q ss_pred ccccccCcccCCC
Q psy9363 402 NLASTNLRNIKLN 414 (421)
Q Consensus 402 ~Ls~N~l~~i~~p 414 (421)
+|++|+|+.++..
T Consensus 108 ~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 108 SLHGNDISVVPEG 120 (193)
T ss_dssp ECCSSCCCBCCTT
T ss_pred ECCCCCCCeeChh
Confidence 9999999986643
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=8.3e-10 Score=96.04 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=69.0
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 401 (421)
++|+.|+|++|.|+ .-.+..+..+++ +.|+|++|+|+.+|... ..+++|+.|+|++|+|+.++ ...+..+++|+.|
T Consensus 33 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCEE
Confidence 78899999999998 222355677888 99999999999888765 78899999999999997765 4458889999999
Q ss_pred ccccccCcc
Q psy9363 402 NLASTNLRN 410 (421)
Q Consensus 402 ~Ls~N~l~~ 410 (421)
+|++|++..
T Consensus 111 ~L~~N~~~c 119 (174)
T 2r9u_A 111 YLYNNPWDC 119 (174)
T ss_dssp ECCSSCBCT
T ss_pred EeCCCCccc
Confidence 999998874
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=7.4e-10 Score=96.36 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=63.7
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCc-ccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPA-HSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP 97 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~-~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~ 97 (421)
++|++|+|++|.|+.. .+..+..+++|++|+| +|+++. +|. ..+.+++|++|+|++|.+..-+... +..++
T Consensus 33 ~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~l~~l~~~~---~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKL--EPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNHLKSIPRGA---FDNLK 105 (174)
T ss_dssp TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT
T ss_pred CCCcEEEeCCCCcccc--CHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCccceeCHHH---hcccc
Confidence 6888888888888843 3556778888888888 588873 343 3467788888888877775444433 56788
Q ss_pred CCceeeecCCCCCCcc
Q psy9363 98 KLSSLRFTKNPILAEE 113 (421)
Q Consensus 98 ~L~~L~l~~N~l~~~~ 113 (421)
+|++|+|++|+|....
T Consensus 106 ~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 106 SLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TCSEEECCSSCBCTTB
T ss_pred CCCEEEeCCCCccccc
Confidence 8888888888886544
No 150
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.93 E-value=1.3e-09 Score=101.30 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=59.4
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY 377 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~ 377 (421)
+|+.+.+++ ..++. +..+ ++|+.|+|++|.++ .+. .. . ++ ++|+|++|+|+.++ .+..+++|+.|+
T Consensus 64 ~L~~L~L~~N~i~~~~~-l~~l--~~L~~L~L~~N~l~~l~~---~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP-LKDL--TKLEELSVNRNRLKNLNG---IP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILS 134 (263)
T ss_dssp TCCEEECCSSCCCCCGG-GTTC--SSCCEEECCSSCCSCCTT---CC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEE
T ss_pred CCCEEECCCCccCCChh-hccC--CCCCEEECCCCccCCcCc---cc-c-CcccEEEccCCccCCCh-hhcCcccccEEE
Confidence 666666665 33333 6666 77777777777776 221 11 1 45 66777777666654 256666677777
Q ss_pred CcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363 378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i 411 (421)
|++|+|++.+ .++.+++|+.|+|++|+++++
T Consensus 135 Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 135 IRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCcCCCCh---HHccCCCCCEEECCCCcCcch
Confidence 7777765532 455666666666666666654
No 151
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=2.4e-10 Score=100.99 Aligned_cols=108 Identities=24% Similarity=0.181 Sum_probs=85.4
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
++|++|+|++|.|+.... ...++.+++|++|+| +|+++ ...|..++.+++|++|+|++|.+.+..+.. +..+++
T Consensus 29 ~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKM---FLGLHQ 103 (192)
T ss_dssp TTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSS---STTCTT
T ss_pred CCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCcCCccCHHH---hcCCCC
Confidence 489999999999985431 113678999999999 59998 455667778899999999988776554443 567999
Q ss_pred CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363 99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE 138 (421)
Q Consensus 99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~ 138 (421)
|++|+|++|.+... .+..++.+++|+.|+++..+
T Consensus 104 L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 104 LKTLNLYDNQISCV------MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEEECCSSCCCEE------CTTSSTTCTTCCEEECTTCC
T ss_pred CCEEECCCCcCCee------CHHHhhcCCCCCEEEeCCCC
Confidence 99999999998443 35568889999999998654
No 152
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.91 E-value=1.2e-09 Score=106.19 Aligned_cols=106 Identities=24% Similarity=0.286 Sum_probs=85.5
Q ss_pred CCCccCCCC----CCCchhhh-cCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCc
Q psy9363 303 NTNKLPIPN----DTSGVMEQ-IFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLE 374 (421)
Q Consensus 303 ~L~~l~l~~----~~~~~~~~-~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~ 374 (421)
.++.|+|++ +..+..+. .+ ++|+.|+|++|.|+ .. +..+..+++ ++|+|++|+|+.++.. +..+++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l--~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRL--TNLHSLLLSHNHLNFIS--SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCC--TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCCCCccChhhhhhcc--cccCEEECCCCcCCccC--hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 345555554 33344455 88 99999999999998 32 245678889 9999999999998765 48899999
Q ss_pred EEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363 375 ELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 375 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
.|+|++|+|+.+. +..+..+++|+.|+|++|+|+.++.
T Consensus 116 ~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 116 VLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp EEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred EEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCH
Confidence 9999999997765 5689999999999999999998654
No 153
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.88 E-value=1.4e-09 Score=112.15 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=53.7
Q ss_pred hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcch-hhHHHHHhh
Q psy9363 18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDF-VKEGSLLHY 95 (421)
Q Consensus 18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~-~~~~~ll~~ 95 (421)
.+++|++|+|++|.|+. +|..++.|++|+.|+| +|++++ +| .++.+++|++|+|++|.+++.. +.. +..
T Consensus 461 ~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~---l~~ 531 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQP---LVS 531 (567)
T ss_dssp GGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGG---GGG
T ss_pred ccccCcEeecCcccccc---cchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHH---Hhc
Confidence 35566666666666653 2344555666666666 355552 34 4455556666666555543331 221 444
Q ss_pred CCCCceeeecCCCCCCccccchhHHHHHHhccCceecc
Q psy9363 96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN 133 (421)
Q Consensus 96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln 133 (421)
+++|+.|+|++|++.... ..+...+..+|+|++||
T Consensus 532 l~~L~~L~L~~N~l~~~~---~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEE---GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTCCEEECTTSGGGGSS---SCTTHHHHHCTTCSEEE
T ss_pred CCCCCEEEecCCcCCCCc---cHHHHHHHHCcccCccC
Confidence 666666666666654332 22333445555665554
No 154
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.88 E-value=4.9e-09 Score=98.88 Aligned_cols=123 Identities=21% Similarity=0.247 Sum_probs=86.3
Q ss_pred cceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cE
Q psy9363 278 VEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TC 352 (421)
Q Consensus 278 ~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~ 352 (421)
.....+.++.+.+.. +..+....+|+.+.+++ ..+ ..+..+ ++|+.|+|++|.++ . ..+..+++ ++
T Consensus 90 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l--~~L~~L~l~~n~l~~~----~~l~~l~~L~~ 160 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI-NGLVHL--PQLESLYLGNNKITDI----TVLSRLTKLDT 160 (291)
T ss_dssp TTCCEEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC-GGGGGC--TTCCEEECCSSCCCCC----GGGGGCTTCSE
T ss_pred CCCCEEECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC-hhhcCC--CCCCEEEccCCcCCcc----hhhccCCCCCE
Confidence 344555565554433 22333333777777765 333 346677 88888888888887 3 34566788 88
Q ss_pred EEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413 (421)
Q Consensus 353 L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~ 413 (421)
|+|++|+|+.+++ +..+++|+.|+|++|.|++++ .+..+++|+.|++++|+++..+.
T Consensus 161 L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 161 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECCCE
T ss_pred EEccCCccccchh-hcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCCcc
Confidence 8888888888765 778888888888888887643 47788888888888888876443
No 155
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.88 E-value=6.4e-09 Score=96.57 Aligned_cols=98 Identities=23% Similarity=0.385 Sum_probs=82.4
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY 377 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~ 377 (421)
+|+.+.+++ ..++ .+..+ ++|+.|+|++|.|+ .+ . +..+++ ++|+|++|+++.++.... ++|+.|+
T Consensus 42 ~L~~L~l~~n~i~~l~-~l~~l--~~L~~L~L~~N~i~~~~---~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLA-GMQFF--TNLKELHLSHNQISDLS---P-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp TCSEEECTTSCCCCCT-TGGGC--TTCCEEECCSSCCCCCG---G-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred cCcEEECcCCCcccch-HHhhC--CCCCEEECCCCccCCCh---h-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 777777775 4445 57888 99999999999999 43 2 778899 999999999999876333 9999999
Q ss_pred CcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363 378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
|++|+++.+ ..++.+++|+.|+|++|+|++++
T Consensus 113 L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 113 LDNNELRDT---DSLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp CCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCG
T ss_pred ccCCccCCC---hhhcCcccccEEECCCCcCCCCh
Confidence 999999774 36889999999999999999874
No 156
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.85 E-value=1.4e-09 Score=99.33 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=82.2
Q ss_pred ccceeeeeecCce-eEeecccchhhhhCCCccCCCC-----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCC
Q psy9363 277 NVEEVKASINAPF-LELVGFDQVHEEQNTNKLPIPN-----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFP 349 (421)
Q Consensus 277 ~~~~~~~~~~~~~-~e~~g~~~l~~~~~L~~l~l~~-----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~ 349 (421)
......+.++... ++.+....+....+|+.+++++ ...+..+..+ ++|++|++++|.++ .+ . +..++
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l--~~L~~L~l~~n~l~~lp---~-~~~l~ 127 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL--PLLKFLGIFNTGLKMFP---D-LTKVY 127 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC--TTCCEEEEEEECCCSCC---C-CTTCC
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC--CCCCEEeCCCCCCcccc---c-ccccc
Confidence 3445556666553 5444333332222566665542 2223456777 88888888888887 32 2 44555
Q ss_pred C-c---EEEccCC-cCcccCCC-CCCCCCCc-EEECcCCCCCCCCcccccCcccccccccccccc-CcccCC
Q psy9363 350 V-T---CLKLPSN-RITTLDSV-PGMFSSLE-ELYLQENNIVDWGEVNALGSLPNLKYLNLASTN-LRNIKL 413 (421)
Q Consensus 350 ~-~---~L~L~~N-~l~~l~~~-~~~l~~L~-~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~-l~~i~~ 413 (421)
+ + +|++++| +++.++.. +..+++|+ .|++++|+++.++ ...+.. ++|+.|++++|+ ++.++.
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECT
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCH
Confidence 6 6 8888888 88877764 47788888 8888888886554 233444 788888888884 876643
No 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=8.9e-09 Score=89.37 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=74.7
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 401 (421)
++|+.|++++|.++ ...+..+..+++ ++|+|++|+|+.++... ..+++|+.|+|++|+|+..+ ...+..+++|+.|
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHHhhCCcccCEE
Confidence 78999999999998 111244677888 99999999999988764 88999999999999998765 4567899999999
Q ss_pred ccccccCcccCC
Q psy9363 402 NLASTNLRNIKL 413 (421)
Q Consensus 402 ~Ls~N~l~~i~~ 413 (421)
++++|+++.++.
T Consensus 106 ~l~~N~l~~~~~ 117 (177)
T 2o6r_A 106 ALDTNQLKSVPD 117 (177)
T ss_dssp ECCSSCCSCCCT
T ss_pred ECcCCcceEeCH
Confidence 999999997654
No 158
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.82 E-value=2.6e-09 Score=113.48 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=53.6
Q ss_pred CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccc
Q psy9363 313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNA 391 (421)
Q Consensus 313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 391 (421)
.+|..+..+ ++|+.|+|++|.|+ .++..+..+++ ++|+|++|+|+.||..+..+++|+.|+|++|.|+.+ +..
T Consensus 238 ~l~~~~~~l--~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l--p~~ 311 (727)
T 4b8c_D 238 NISANIFKY--DFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL--PWE 311 (727)
T ss_dssp CCCGGGGGC--CSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC--CSS
T ss_pred CCChhhcCC--CCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc--Chh
Confidence 344444455 66666666666665 22233455556 666666666666665556666666666666666543 234
Q ss_pred cCccccccccccccccCcc
Q psy9363 392 LGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 392 l~~l~~L~~L~Ls~N~l~~ 410 (421)
|+.+++|+.|+|++|+|++
T Consensus 312 ~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTSCTTCCCEECTTSCCCS
T ss_pred hhcCCCccEEeCCCCccCC
Confidence 6666666666666666654
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=5.4e-09 Score=90.44 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=54.3
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK 98 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~ 98 (421)
++|++|+|++|.|+.. .+..+..+++|++|+| +|+++. ..+.....+++|++|+|++|.+..-+... +..+++
T Consensus 30 ~~l~~L~L~~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDNQITKL--EPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGA---FDNLKS 103 (170)
T ss_dssp TTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred CCCcEEEcCCCcCCcc--ChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHHH---hcCCCC
Confidence 5677777777777743 2445666777777777 477762 22333356677777777666664433332 556777
Q ss_pred CceeeecCCCCCCc
Q psy9363 99 LSSLRFTKNPILAE 112 (421)
Q Consensus 99 L~~L~l~~N~l~~~ 112 (421)
|++|+|++||+.-.
T Consensus 104 L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 104 LTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCBCTT
T ss_pred CCEEEeCCCCCCCC
Confidence 77777777776544
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=1.3e-08 Score=97.50 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=52.7
Q ss_pred CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCc-EEECcCCCCCCCCcccccCcccccc
Q psy9363 324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLE-ELYLQENNIVDWGEVNALGSLPNLK 399 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~-~L~Ls~N~l~~~~~~~~l~~l~~L~ 399 (421)
++|+.++|++|.++ .+. ..+..+++ +.++|++| ++.|+... ..+.+|+ .+++++ .++.++ ..+|..+++|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~--~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L~ 300 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPD--FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNLR 300 (329)
T ss_dssp TTCCEEECTTBCCCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTEE
T ss_pred CCCeEEECCCCCcceecH--hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccCC
Confidence 66777777776666 332 44555666 67777666 66666543 5666676 777766 555544 44666677777
Q ss_pred ccccccccCcccC
Q psy9363 400 YLNLASTNLRNIK 412 (421)
Q Consensus 400 ~L~Ls~N~l~~i~ 412 (421)
.++++.|+++.|+
T Consensus 301 ~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 301 YVLATGDKITTLG 313 (329)
T ss_dssp EEEECSSCCCEEC
T ss_pred EEEeCCCccCccc
Confidence 7777777766654
No 161
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.76 E-value=1.5e-09 Score=115.31 Aligned_cols=111 Identities=17% Similarity=0.115 Sum_probs=86.7
Q ss_pred hHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHH
Q psy9363 13 DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGS 91 (421)
Q Consensus 13 ~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 91 (421)
.+....+++|+.|||++|.|+. ++..+..+++|++|+| +|+++ .+|..++.+++|++|+|++|.++ .++..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN---ISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAE-- 288 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC---CCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSS--
T ss_pred hhhhccCCCCcEEECCCCCCCC---CChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChh--
Confidence 3445567899999999999985 4555668999999999 58888 67888889999999999888775 43333
Q ss_pred HHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363 92 LLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER 139 (421)
Q Consensus 92 ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~ 139 (421)
+..|++|++|+|++|.|... +..++.+++|++|+++....
T Consensus 289 -~~~l~~L~~L~L~~N~l~~l-------p~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 289 -LGSCFQLKYFYFFDNMVTTL-------PWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp -GGGGTTCSEEECCSSCCCCC-------CSSTTSCTTCCCEECTTSCC
T ss_pred -hcCCCCCCEEECCCCCCCcc-------ChhhhcCCCccEEeCCCCcc
Confidence 66799999999999998432 34588999999999986544
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=2e-08 Score=96.83 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCchhhhcCCCCCccEEEeeC-cccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCc
Q psy9363 313 TSGVMEQIFPQGHIHTLTLGN-MGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGE 388 (421)
Q Consensus 313 ~~~~~~~~l~~~~L~~L~Ls~-N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~ 388 (421)
.+|. +..+ ++|+.|+|++ |.|+ .+ +..+..+++ +.|+|++|+|+++++.. ..+++|+.|+|++|+|+.++
T Consensus 23 ~ip~-l~~~--~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~- 96 (347)
T 2ifg_A 23 SLHH-LPGA--ENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS- 96 (347)
T ss_dssp TTTT-SCSC--SCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-
T ss_pred ccCC-CCCC--CCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-
Confidence 3566 7777 8899999986 9988 32 245677888 99999999999887654 78899999999999997765
Q ss_pred ccccCccccccccccccccCc
Q psy9363 389 VNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 389 ~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
+..+..++ |+.|+|++|++.
T Consensus 97 ~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 97 WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp STTTCSCC-CCEEECCSSCCC
T ss_pred HHHcccCC-ceEEEeeCCCcc
Confidence 44555555 999999999886
No 163
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.65 E-value=1.8e-10 Score=102.21 Aligned_cols=101 Identities=26% Similarity=0.337 Sum_probs=69.5
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY 377 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~ 377 (421)
+|+.+++++ ..+| .+..+ ++|+.|+|++|.++ ++ .....+++ ++|+|++|+|+.+| .+..+++|+.|+
T Consensus 49 ~L~~L~ls~n~l~~l~-~~~~l--~~L~~L~l~~n~l~~l~---~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 49 ACKHLALSTNNIEKIS-SLSGM--ENLRILSLGRNLIKKIE---NLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp TCSEEECSEEEESCCC-CHHHH--TTCCEEEEEEEEECSCS---SHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred CCCEEECCCCCCcccc-ccccC--CCCCEEECCCCCccccc---chhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 566666654 3455 66777 78888888888777 32 33334456 77888888887766 356677788888
Q ss_pred CcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363 378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410 (421)
Q Consensus 378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~ 410 (421)
|++|+++.++.+..+..+++|+.|++++|+++.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 888887665533467777888888888887765
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.46 E-value=1.4e-07 Score=90.85 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=69.9
Q ss_pred cEEEeeCc-ccchhhHHHHhccCCC-cEEEccC-CcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363 327 HTLTLGNM-GYIWADILKLLANFPV-TCLKLPS-NRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402 (421)
Q Consensus 327 ~~L~Ls~N-~l~~~~i~~~~~~l~~-~~L~L~~-N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 402 (421)
..++++++ .|+ .+|. +..+++ +.|+|++ |+|+.+++. +..+++|+.|+|++|+|+.++ +..|+.+++|+.|+
T Consensus 11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEe
Confidence 35688888 887 3445 777788 9999996 999998854 589999999999999997765 66889999999999
Q ss_pred cccccCcccCC
Q psy9363 403 LASTNLRNIKL 413 (421)
Q Consensus 403 Ls~N~l~~i~~ 413 (421)
|++|+|+.++.
T Consensus 87 l~~N~l~~~~~ 97 (347)
T 2ifg_A 87 LSFNALESLSW 97 (347)
T ss_dssp CCSSCCSCCCS
T ss_pred CCCCccceeCH
Confidence 99999998653
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=5.6e-08 Score=94.89 Aligned_cols=117 Identities=12% Similarity=0.008 Sum_probs=65.8
Q ss_pred CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcc---c-ccccccchhccccccCCcc-hhhHHHH
Q psy9363 19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAH---S-YLAEVVFFVHLGRTLCDED-FVKEGSL 92 (421)
Q Consensus 19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~---~-~~~~~L~~L~L~~~~~~~~-~~~~~~l 92 (421)
+++|++|||++|.|++ ..+..++..+++|+.|+| +|.++....... + ...++|++|+|++|.++.. ...+...
T Consensus 100 ~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 100 RHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 3578888888888874 233444445667788888 476652111110 0 1235677777776665332 2233334
Q ss_pred HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363 93 LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE 138 (421)
Q Consensus 93 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~ 138 (421)
+..+++|++|+|++|.|.... .......+...++|+.||++...
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g--~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEG--LELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHH--HHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCCcCEEeCCCCCCCcHH--HHHHHHHHhcCCCcCeEECCCCC
Confidence 566777777777777763221 11223345566677777776533
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=3.7e-08 Score=91.34 Aligned_cols=81 Identities=25% Similarity=0.291 Sum_probs=51.1
Q ss_pred EEeeCcccc-hhhHHHH-hccCCC-cEEEccCCcCcccCC---CCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363 329 LTLGNMGYI-WADILKL-LANFPV-TCLKLPSNRITTLDS---VPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402 (421)
Q Consensus 329 L~Ls~N~l~-~~~i~~~-~~~l~~-~~L~L~~N~l~~l~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 402 (421)
++++.|..+ +..+..+ ...+|. +.|+|++|+|+.++. .+..+++|+.|+|++|+|+++.++..+..+ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 556666555 3333222 255677 777777777776542 124677777777777777766544444444 777777
Q ss_pred cccccCcc
Q psy9363 403 LASTNLRN 410 (421)
Q Consensus 403 Ls~N~l~~ 410 (421)
|++|+++.
T Consensus 227 L~~Npl~~ 234 (267)
T 3rw6_A 227 LDGNSLCD 234 (267)
T ss_dssp CTTSTTGG
T ss_pred ccCCcCcc
Confidence 77777765
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=3e-07 Score=80.50 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=88.8
Q ss_pred HhhhCCCCcEEECCCC-CCCCh--hhHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhccccccCCcc-h
Q psy9363 15 IEQAVPFIEDLDLSRN-LLASW--FAVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHLGRTLCDED-F 86 (421)
Q Consensus 15 ~~~~~~~L~~L~Ls~N-~ls~~--~~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L~~~~~~~~-~ 86 (421)
+...+++|++|+|++| .|++. ..+...+...++|++|+| .|.+.... +...+...++|++|+|++|.++.. .
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4456789999999999 99963 345667777899999999 58887211 112233446899999998877543 3
Q ss_pred hhHHHHHhhCCCCceeee--cCCCCCCccccchhHHHHHHhccCceeccCCccChh
Q psy9363 87 VKEGSLLHYLPKLSSLRF--TKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQ 140 (421)
Q Consensus 87 ~~~~~ll~~l~~L~~L~l--~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~ 140 (421)
..+...+...+.|++|+| ++|.+.... .......+...++|+.|+++.....
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g--~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNV--EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHH--HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHH--HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344445788899999999 899985432 1223446777799999999866544
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=1.4e-06 Score=84.84 Aligned_cols=90 Identities=18% Similarity=0.077 Sum_probs=39.3
Q ss_pred CCCcEEECCCCCCCC--hhhHHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-hhhHHHH
Q psy9363 20 PFIEDLDLSRNLLAS--WFAVGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED-FVKEGSL 92 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~--~~~i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l 92 (421)
++|++|+|++|.|++ ...++..+..+++|++|+| .|.+... .++..+...++|++|+|++|.++.. ...+...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445555555555542 1123333444555555555 2444310 0111122334555555555444322 1222223
Q ss_pred HhhCCCCceeeecCCCC
Q psy9363 93 LHYLPKLSSLRFTKNPI 109 (421)
Q Consensus 93 l~~l~~L~~L~l~~N~l 109 (421)
+...++|++|+|++|+|
T Consensus 235 L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 235 AREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHCSSCCEEECTTSSC
T ss_pred HHhCCCCCEEeccCCCC
Confidence 44455555555555555
No 169
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=3.4e-06 Score=73.69 Aligned_cols=93 Identities=9% Similarity=0.064 Sum_probs=69.7
Q ss_pred hhCCCCcEEECCCCCCCChh--hHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhcc--ccccCCcc-hh
Q psy9363 17 QAVPFIEDLDLSRNLLASWF--AVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHL--GRTLCDED-FV 87 (421)
Q Consensus 17 ~~~~~L~~L~Ls~N~ls~~~--~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L--~~~~~~~~-~~ 87 (421)
..+++|++|||++|.|++-+ .+...+...++|++|+| +|.+.... +...+...+.|++|+| +.|.++.. ..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 34688999999999999633 45666777899999999 58887311 2223445578999999 66777443 33
Q ss_pred hHHHHHhhCCCCceeeecCCCC
Q psy9363 88 KEGSLLHYLPKLSSLRFTKNPI 109 (421)
Q Consensus 88 ~~~~ll~~l~~L~~L~l~~N~l 109 (421)
.+...+...+.|++|+|++|.+
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCcCEEeccCCCC
Confidence 4555588899999999999997
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.50 E-value=5.9e-05 Score=73.04 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=30.5
Q ss_pred cccccchhccccccCCcchh-hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363 68 LAEVVFFVHLGRTLCDEDFV-KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS 135 (421)
Q Consensus 68 ~~~~L~~L~L~~~~~~~~~~-~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s 135 (421)
.+++|++|+|.+|.+..... .+.. ...+|+|++|+|+.|.+.... .......+..+++|+.|+++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~n~L~d~G--~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISAGVLTDEG--ARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCSSCCBHHH--HHHHHTTHHHHTTCSEEECC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCCCCCChHH--HHHHHhhcccCCcceEEECC
Confidence 35666666666555432211 1111 124566666666666653211 00111123456666666665
No 171
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.32 E-value=9.1e-05 Score=63.80 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-c-ccCCCCCCccccc----ccccchhcccccc-CCcchhhHHHH
Q psy9363 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-I-RLKSSSAPAHSYL----AEVVFFVHLGRTL-CDEDFVKEGSL 92 (421)
Q Consensus 20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N-~l~~~~~p~~~~~----~~~L~~L~L~~~~-~~~~~~~~~~l 92 (421)
..|++||||++.|++- ++. .+..+++|++|+|+ . +++...+. .++. +++|++|+|++|. ++. ..+..
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~-~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~- 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFD-HMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTD--KGIIA- 134 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGG-GGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCH--HHHHH-
T ss_pred ceEeEEeCcCCCccHH-HHH-HhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCH--HHHHH-
Confidence 3699999999999863 343 35789999999994 4 45521111 1222 3579999998763 432 23334
Q ss_pred HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCcee
Q psy9363 93 LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKL 131 (421)
Q Consensus 93 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ 131 (421)
+..+++|++|++++.+-.... .......-..+|++++
T Consensus 135 L~~~~~L~~L~L~~c~~Itd~--gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKEK--EKIVQAFKTSLPSLEL 171 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCCH--HHHHHHHHHHCTTCEE
T ss_pred HhcCCCCCEEECCCCCCCCch--HHHHHHHHHHCCCcEE
Confidence 667999999999998732221 1223344556677653
No 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.16 E-value=0.00054 Score=55.97 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=19.2
Q ss_pred cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCC
Q psy9363 351 TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNI 383 (421)
Q Consensus 351 ~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l 383 (421)
+.|+|++|+|+.|+... ..+++|+.|+|++|.+
T Consensus 34 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 34 TELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp SEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 56666666666655443 4455666666666655
No 173
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.00034 Score=66.51 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=75.3
Q ss_pred CCCccCCCC---CC-CchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-c-EEEccCCcCcccCCCC-CCCCCCc
Q psy9363 303 NTNKLPIPN---DT-SGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-T-CLKLPSNRITTLDSVP-GMFSSLE 374 (421)
Q Consensus 303 ~L~~l~l~~---~~-~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~-~L~L~~N~l~~l~~~~-~~l~~L~ 374 (421)
+|+.++|++ .. .+..|..+ ++|+.++|.+| ++ .+. ..+..+++ + .+++++ .++.|+... ..+++|+
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~--~~L~~l~l~~n-i~~I~~--~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQK--KYLLKIKLPHN-LKTIGQ--RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTC--TTCCEEECCTT-CCEECT--TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred CCeEEECCCCCcceecHhhhhCC--CCCCEEECCcc-cceehH--HHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 677777764 22 34568899 99999999998 65 443 56778888 8 999998 888887554 8899999
Q ss_pred EEECcCCCCCCCCcccccCcccccccccc
Q psy9363 375 ELYLQENNIVDWGEVNALGSLPNLKYLNL 403 (421)
Q Consensus 375 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~L 403 (421)
.+++++|.++.++ ...|.++++|+.++.
T Consensus 301 ~l~l~~n~i~~I~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLG-DELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence 9999999998876 568999999998763
No 174
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.00 E-value=0.0016 Score=57.01 Aligned_cols=122 Identities=7% Similarity=0.037 Sum_probs=81.8
Q ss_pred hhCCCCcEEECCCC-CCCChh--hHHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-hhh
Q psy9363 17 QAVPFIEDLDLSRN-LLASWF--AVGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED-FVK 88 (421)
Q Consensus 17 ~~~~~L~~L~Ls~N-~ls~~~--~i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~-~~~ 88 (421)
..-+.|++|+|++| .|.+-+ .+...+..=+.|+.|+| .|.+... .+...+..=+.|++|+|++|.++.. ...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33568999999996 898532 45666777789999999 5888721 1111122335799999998888544 344
Q ss_pred HHHHHhhCCCCceeeecCC---CCCCccccchhHHHHHHhccCceeccCCccChh
Q psy9363 89 EGSLLHYLPKLSSLRFTKN---PILAEERVVSSREKTIARLGGLKLLNGSAIERQ 140 (421)
Q Consensus 89 ~~~ll~~l~~L~~L~l~~N---~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~ 140 (421)
+...+..=+.|++|+|++| .+.... ......++..-++|+.|++......
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g--~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQV--EMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHH--HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHH--HHHHHHHHHhCCCcCeEeccCCCcc
Confidence 5455777788999999865 432211 2234456777789999998765544
No 175
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.87 E-value=0.00051 Score=66.38 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=43.5
Q ss_pred hCCCCcEEECCCCCCC----Ch---hhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhH
Q psy9363 18 AVPFIEDLDLSRNLLA----SW---FAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKE 89 (421)
Q Consensus 18 ~~~~L~~L~Ls~N~ls----~~---~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~ 89 (421)
.+++|+.|.+..+.+. +| +.+...+..+|+|+.|.|+ |. . ..++. + ..++|++|+|..|.+... .+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~-~-l~l~~-~-~~~~L~~L~L~~~~l~~~--~l 210 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-N-LSIGK-K-PRPNLKSLEIISGGLPDS--VV 210 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB-T-CBCCS-C-BCTTCSEEEEECSBCCHH--HH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC-C-ceecc-c-cCCCCcEEEEecCCCChH--HH
Confidence 4578888887665432 11 2355666777888888883 41 1 12232 1 256677777654444222 11
Q ss_pred HHH-HhhCCCCceeeec
Q psy9363 90 GSL-LHYLPKLSSLRFT 105 (421)
Q Consensus 90 ~~l-l~~l~~L~~L~l~ 105 (421)
..+ ...+|+|++|+|+
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 111 1246666666664
No 176
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.79 E-value=0.0017 Score=63.66 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=68.0
Q ss_pred CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc------hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCC
Q psy9363 303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI------WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFS 371 (421)
Q Consensus 303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~------~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~ 371 (421)
+|+.+.+++ ...+..|..+ ++|+.+++.+|.+. .+. ..+..+++ +.+.|. |.++.|+... ..+.
T Consensus 249 ~L~~i~lp~~i~~I~~~aF~~c--~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 249 GITTVKLPNGVTNIASRAFYYC--PELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEIP-ESIRILGQGLLGGNR 323 (401)
T ss_dssp CCSEEEEETTCCEECTTTTTTC--TTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECCC-TTCCEECTTTTTTCC
T ss_pred CccEEEeCCCccEEChhHhhCC--CCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEeC-CceEEEhhhhhcCCC
Confidence 555555543 1224567778 88888888887763 222 45566777 888887 4577776544 6678
Q ss_pred CCcEEECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412 (421)
Q Consensus 372 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~ 412 (421)
+|+.++|..| ++.+. ..+|..+ +|+.+++++|.+..+.
T Consensus 324 ~L~~l~lp~~-l~~I~-~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQIN-FSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp SCCEEEECTT-CCEEC-TTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CccEEEECcc-ccEEc-HHhCCCC-CCCEEEEcCCCCcccc
Confidence 8888888655 55554 4567777 8888888888776543
No 177
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.61 E-value=0.00033 Score=60.29 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=55.5
Q ss_pred CccEEEeeCcccchhhHHHHhccCCC-cEEEccCCc-Ccc--cCCCCCC----CCCCcEEECcCCC-CCCCCcccccCcc
Q psy9363 325 HIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNR-ITT--LDSVPGM----FSSLEELYLQENN-IVDWGEVNALGSL 395 (421)
Q Consensus 325 ~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~-l~~--l~~~~~~----l~~L~~L~Ls~N~-l~~~~~~~~l~~l 395 (421)
+|+.|||+++.++-..+ ..+..+++ +.|+|+++. |++ +.. +.. .++|++|+|+++. |++-. +..+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence 68888888888872111 33467788 888888874 663 211 222 3478888998875 76543 4567788
Q ss_pred cccccccccccc-Cc
Q psy9363 396 PNLKYLNLASTN-LR 409 (421)
Q Consensus 396 ~~L~~L~Ls~N~-l~ 409 (421)
++|+.|+|+++. ++
T Consensus 139 ~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCCEEEEESCTTCC
T ss_pred CCCCEEECCCCCCCC
Confidence 888888888875 44
No 178
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.24 E-value=0.0057 Score=59.85 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=43.1
Q ss_pred CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-----ccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccc
Q psy9363 324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-----TLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLP 396 (421)
Q Consensus 324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-----~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 396 (421)
.+|+.+.|.++--+.+. ..+..+++ +.+.+.+|.+. .|+... ..+++|+.++|. +.++.+. ...|..++
T Consensus 248 ~~L~~i~lp~~i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~-~~aF~~c~ 323 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG-QGLLGGNR 323 (401)
T ss_dssp CCCSEEEEETTCCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC-TTTTTTCC
T ss_pred CCccEEEeCCCccEECh--hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh-hhhhcCCC
Confidence 34555555333222222 33445555 66666666654 344332 556666666666 3354544 34566667
Q ss_pred cccccccccccCcc
Q psy9363 397 NLKYLNLASTNLRN 410 (421)
Q Consensus 397 ~L~~L~Ls~N~l~~ 410 (421)
+|+.++|..| ++.
T Consensus 324 ~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQ 336 (401)
T ss_dssp SCCEEEECTT-CCE
T ss_pred CccEEEECcc-ccE
Confidence 7777776544 443
No 179
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.67 E-value=0.011 Score=48.08 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=44.6
Q ss_pred cEEEccCCcCc--ccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363 351 TCLKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409 (421)
Q Consensus 351 ~~L~L~~N~l~--~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~ 409 (421)
..++-+++.++ .+|.. -..+|+.|+|++|+|+.++ ...|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence 46888888888 78753 2447899999999998876 567788889999999999773
No 180
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.34 E-value=0.0093 Score=52.11 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=61.4
Q ss_pred CCCccCCCC-CCCc--------hhhhcCCCCCccEEEeeCcccc---hhhHHHHhccCCC-cEEEccCCcCcc-----cC
Q psy9363 303 NTNKLPIPN-DTSG--------VMEQIFPQGHIHTLTLGNMGYI---WADILKLLANFPV-TCLKLPSNRITT-----LD 364 (421)
Q Consensus 303 ~L~~l~l~~-~~~~--------~~~~~l~~~~L~~L~Ls~N~l~---~~~i~~~~~~l~~-~~L~L~~N~l~~-----l~ 364 (421)
.|+.+.|++ ..+. ..+..- +.|+.|+|++|.|. -..+...+..=.. ++|+|++|+|+. |-
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N--~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNS--KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTC--SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhC--CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 566666653 1222 223444 78888999999888 2234444444455 888999998873 21
Q ss_pred CCCCCCCCCcEEECcCCCC-CCCC-----cccccCccccccccccccccC
Q psy9363 365 SVPGMFSSLEELYLQENNI-VDWG-----EVNALGSLPNLKYLNLASTNL 408 (421)
Q Consensus 365 ~~~~~l~~L~~L~Ls~N~l-~~~~-----~~~~l~~l~~L~~L~Ls~N~l 408 (421)
..+..-..|++|+|++|.. .-+. ....+..-+.|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1124445688899886533 1111 112344456788888887764
No 181
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.27 E-value=0.11 Score=49.67 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=64.0
Q ss_pred CCCccCCCC--C-CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEE
Q psy9363 303 NTNKLPIPN--D-TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELY 377 (421)
Q Consensus 303 ~L~~l~l~~--~-~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~ 377 (421)
.|+.+.++. . .....+..+ .+|+.+.+..+.-..+. ..+..+++ +.+.+.++.++.|+... ..+.+|+.+.
T Consensus 241 ~L~~i~lp~~v~~I~~~aF~~~--~~l~~i~l~~~i~~i~~--~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 241 ALDEIAIPKNVTSIGSFLLQNC--TALKTLNFYAKVKTVPY--LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp SCCEEEECTTCCEECTTTTTTC--TTCCEEEECCCCSEECT--TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred cceEEEcCCCccEeCcccccee--ehhccccccccceeccc--cccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 555555543 1 123446667 78888888655333322 34566677 88888888888877654 6778888888
Q ss_pred CcCCCCCCCCcccccCccccccccccccc
Q psy9363 378 LQENNIVDWGEVNALGSLPNLKYLNLAST 406 (421)
Q Consensus 378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N 406 (421)
|..+ ++.+. ..+|.++.+|+.+.+..+
T Consensus 317 lp~~-l~~I~-~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 317 LPTA-LKTIQ-VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTT-CCEEC-TTTTTTCTTCCCCCCCTT
T ss_pred cCcc-ccEEH-HHHhhCCCCCCEEEECCc
Confidence 8755 55554 456778888888877654
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.58 E-value=0.23 Score=47.95 Aligned_cols=102 Identities=7% Similarity=0.074 Sum_probs=58.4
Q ss_pred hCC-CCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cc---cCCCCCCcccccccccchhccccccCCcchhhHHHH
Q psy9363 18 AVP-FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IR---LKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSL 92 (421)
Q Consensus 18 ~~~-~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~---l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~l 92 (421)
.|. .|+.+.+..+ ++.++. ..+..+++|+.+.+. |. +....-- ....+.+|+.+.+.+++..-... .
T Consensus 61 ~~~~~L~sI~iP~s-vt~Ig~--~AF~~C~~L~~i~~~~n~p~~l~~Ig~~-aF~~c~~L~~i~~~~~~~~I~~~----a 132 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT-VTEIGS--NAFYNCTSLKRVTIQDNKPSCVKKIGRQ-AFMFCSELTDIPILDSVTEIDSE----A 132 (394)
T ss_dssp TCCSCCCEEEECTT-CCEECT--TTTTTCTTCCEEEEGGGCCCCCCEECTT-TTTTCTTCCBCGGGTTCSEECTT----T
T ss_pred CCCCcCEEEEECCC-eeEEhH--HHhhCCccCceEeecCCCCCeeeEechh-hchhcccceeeccCCccceehhh----h
Confidence 453 5889998765 554442 345678899999884 42 2211111 22356778877775554321111 1
Q ss_pred HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccC
Q psy9363 93 LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNG 134 (421)
Q Consensus 93 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~ 134 (421)
+..+.+|+.+.+..+-- ......+..+..|+.+..
T Consensus 133 F~~c~~L~~i~lp~~~~-------~I~~~~F~~c~~L~~i~~ 167 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGVT-------SVADGMFSYCYSLHTVTL 167 (394)
T ss_dssp TTTCTTCCEEECCTTCC-------EECTTTTTTCTTCCEEEC
T ss_pred hhhhcccccccccceee-------eecccceecccccccccc
Confidence 55688888888865531 222345666777776655
No 183
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.55 E-value=0.43 Score=45.93 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=38.3
Q ss_pred hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363 318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSL 395 (421)
Q Consensus 318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 395 (421)
+..+ ++|+.+.+..+.-..+. ..+..+.+ +.+.|..+ ++.|.... ..+.+|+.+.+..+ ++.+. ..+|.++
T Consensus 284 F~~c--~~L~~i~l~~~i~~I~~--~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~-~~aF~~C 356 (394)
T 4gt6_A 284 FMNC--PALQDIEFSSRITELPE--SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP-ESAFSNC 356 (394)
T ss_dssp TTTC--TTCCEEECCTTCCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC-GGGGTTC
T ss_pred cccc--cccccccCCCcccccCc--eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh-HhHhhCC
Confidence 4445 55555555432211222 23344444 55555433 44444322 45555665555433 33433 3345555
Q ss_pred ccccccccccc
Q psy9363 396 PNLKYLNLAST 406 (421)
Q Consensus 396 ~~L~~L~Ls~N 406 (421)
++|+.+++.+|
T Consensus 357 ~~L~~i~~~~~ 367 (394)
T 4gt6_A 357 TALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEESSC
T ss_pred CCCCEEEECCc
Confidence 55555555544
No 184
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.90 E-value=0.53 Score=45.28 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=53.3
Q ss_pred hhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363 317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGS 394 (421)
Q Consensus 317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 394 (421)
.+..+ .+|+.+.+.++--..+. ..+..+.+ +.++|..+ ++.|.... ..+.+|+.+++..| ++.+. ..+|.+
T Consensus 292 ~F~~~--~~L~~i~l~~~i~~I~~--~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~ 364 (394)
T 4fs7_A 292 TFYGC--SSLTEVKLLDSVKFIGE--EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG-ANAFQG 364 (394)
T ss_dssp TTTTC--TTCCEEEECTTCCEECT--TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC-TTTBTT
T ss_pred ccccc--ccccccccccccceech--hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh-HHHhhC
Confidence 45566 77777777655222332 34555666 77777643 66665543 66778888888766 55554 456777
Q ss_pred cccccccccccc
Q psy9363 395 LPNLKYLNLAST 406 (421)
Q Consensus 395 l~~L~~L~Ls~N 406 (421)
+++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 888888877654
No 185
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.82 E-value=0.88 Score=43.32 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=63.1
Q ss_pred hhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 316 VMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
..+..+ ..|+.+.+..+--+.+. ..+..... +.+.+..+ ++.++... ..+.+|+.+.+.++.++.++ ...|.
T Consensus 234 ~~f~~~--~~L~~i~lp~~v~~I~~--~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-~~aF~ 307 (379)
T 4h09_A 234 GAFYGM--KALDEIAIPKNVTSIGS--FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE-PRVFM 307 (379)
T ss_dssp TTTTTC--SSCCEEEECTTCCEECT--TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC-TTTTT
T ss_pred ccccCC--ccceEEEcCCCccEeCc--cccceeehhcccccccc-ceeccccccccccccccccccccccceeh-hhhhc
Confidence 456778 89999999877333332 34556667 88888654 67776544 78899999999999987766 56788
Q ss_pred ccccccccccccc
Q psy9363 394 SLPNLKYLNLAST 406 (421)
Q Consensus 394 ~l~~L~~L~Ls~N 406 (421)
++.+|+.+.|..+
T Consensus 308 ~c~~L~~i~lp~~ 320 (379)
T 4h09_A 308 DCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEECCTT
T ss_pred CCCCCCEEEcCcc
Confidence 8999999888643
No 186
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.23 E-value=1.7 Score=41.73 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=63.1
Q ss_pred hhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363 316 VMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG 393 (421)
Q Consensus 316 ~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~ 393 (421)
..+..+ ..++.+.+..+.+. . ..+....+ +.+.+..+ ++.|+... ..+.+|+.++|..+ ++.+. ..+|.
T Consensus 270 ~~F~~~--~~l~~~~~~~~~i~-~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~ 340 (394)
T 4fs7_A 270 SLFYNC--SGLKKVIYGSVIVP-E---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG-KRSFR 340 (394)
T ss_dssp CTTTTC--TTCCEEEECSSEEC-T---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC-TTTTT
T ss_pred cccccc--cccceeccCceeec-c---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh-HHhcc
Confidence 456677 88888888777664 1 23455667 88888765 77777654 78899999999755 66655 45788
Q ss_pred ccccccccccccccCccc
Q psy9363 394 SLPNLKYLNLASTNLRNI 411 (421)
Q Consensus 394 ~l~~L~~L~Ls~N~l~~i 411 (421)
++.+|+.+++..| ++.|
T Consensus 341 ~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp TCTTCCEECCCTT-CCEE
T ss_pred CCCCCCEEEECcc-ccEe
Confidence 9999999999876 6554
Done!