RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9363
(421 letters)
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 96.7 bits (241), Expect = 7e-25
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV GTIR+ G+ G WYGI+ + + GK+DGS GV+YF S G
Sbjct: 13 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELE-KPHGKNDGSVGGVQYFSC-SPRYGI 70
Query: 245 FMRRDKLNFGSSFMEALHRKY 265
F ++ + ++ L
Sbjct: 71 FAPPSRVQRVTDSLDTLSEIS 91
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 94.7 bits (235), Expect = 1e-23
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 139 RQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGT 198
+ + GS +++ +E + P V + +G RV + G
Sbjct: 21 KILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEFVDDFRVGERVWVNGNKPGF 80
Query: 199 IRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS 256
I+++G + G W GI D E GK+DGS GV+YF G F R KL S
Sbjct: 81 IQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGIFTRPSKLTRKVS 136
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 92.9 bits (231), Expect = 2e-23
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 184 DIGLRVC--DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTT 241
++G ++ G IR++G G V G++ + E G DG+ G +YF
Sbjct: 19 EVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCAL-K 77
Query: 242 SGSFMRRDKLNFGSSFME 259
F++ S F
Sbjct: 78 KALFVKLKSCRPDSRFAS 95
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 92.5 bits (230), Expect = 3e-23
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV GT+R+ G+ E G W G++ D E GK+DGS GV+YF G
Sbjct: 19 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELD-EPEGKNDGSVGGVRYFICPP-KQGL 76
Query: 245 FMRRDKLNFGSS 256
F K++
Sbjct: 77 FASVSKISKAVD 88
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 91.8 bits (228), Expect = 5e-23
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
G V G +RYVG + +G W G++ D GK+DGS G +YF + G
Sbjct: 26 EGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELD-LPSGKNDGSIGGKQYFRCNP-GYGL 83
Query: 245 FMRRDKLNFGSS 256
+R ++ +S
Sbjct: 84 LVRPSRVRRATS 95
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 91.3 bits (227), Expect = 7e-23
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
IG RV G +R++G + +G W G++ D E GK+DG+ G +YF G
Sbjct: 4 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYFQCQP-KYGL 61
Query: 245 FMRRDKLNFGSS 256
F K+
Sbjct: 62 FAPVHKVTKIGF 73
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus musculus}
SCOP: b.34.10.1
Length = 102
Score = 91.4 bits (227), Expect = 7e-23
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 184 DIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
++G +V + +G +R+ G + G WYGI+ D + GKHDGS GV+YF G
Sbjct: 27 EVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELD-QPTGKHDGSVFGVRYFTCAP-RHG 84
Query: 244 SFMRRDKLNFGSSF 257
F ++ S
Sbjct: 85 VFAPASRIQRIGSG 98
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 84
Score = 90.8 bits (226), Expect = 8e-23
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV G +RYVG + +G W G++ D E GK+DG+ G +YF G
Sbjct: 10 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYFQCPP-KFGL 67
Query: 245 FMRRDKLNFGSSF 257
F K+ S
Sbjct: 68 FAPIHKVIRIGSG 80
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 90.5 bits (225), Expect = 9e-23
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G I+++G + G W GI D E GK+DGS GV+YF G
Sbjct: 5 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 62
Query: 245 FMRRDKLNFGSS 256
F R KL
Sbjct: 63 FTRPSKLTRKVQ 74
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 90.0 bits (224), Expect = 1e-22
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G I+++G + G W GI D E GK+DGS GV+YF G
Sbjct: 5 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 62
Query: 245 FMRRDKL 251
F R KL
Sbjct: 63 FTRPSKL 69
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 90.6 bits (225), Expect = 2e-22
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 185 IGLRVC-DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
+G RV +GHRGT+ YVG+ G W G+ D E +GK+DG+ G KYF G
Sbjct: 36 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYFTCDE-GHG 93
Query: 244 SFMRRDKLNFGSSF 257
F+R+ ++
Sbjct: 94 IFVRQSQIQVFEDS 107
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 91
Score = 89.7 bits (223), Expect = 2e-22
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 181 MEDDIGLRVC-DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
++ G +V S T+RYVG + G+W G++ +GK+DG+ +YF
Sbjct: 11 VKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELR-SAKGKNDGAVGDKRYFTC-K 68
Query: 240 TTSGSFMRRDKLNFGSS 256
G +R ++ +
Sbjct: 69 PNYGVLVRPSRVTYRGI 85
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 89.8 bits (223), Expect = 3e-22
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + GT+R+ G+ E G W GI+ D E GK++GS V+YF + G
Sbjct: 27 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELD-EPEGKNNGSVGRVQYFKC-APKYGI 84
Query: 245 FMRRDKLNFGSSF 257
F K++
Sbjct: 85 FAPLSKISKLKDS 97
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 89.8 bits (223), Expect = 3e-22
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G ++Y+G + G W G+ D + GK+DG+ GV+YF + G
Sbjct: 21 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLD-DPVGKNDGAVGGVRYFECPA-LQGI 78
Query: 245 FMRRDKLNFGSS 256
F R KL S
Sbjct: 79 FTRPSKLTRQPS 90
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 89.0 bits (221), Expect = 4e-22
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 185 IGLRV-CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
+G RV +GHRGT+ YVG+ G W G+ D E +GK+DG+ G KYF G
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYFTCDE-GHG 72
Query: 244 SFMRRDKLNFGSS 256
F+R+ ++
Sbjct: 73 IFVRQSQIQVFED 85
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 89.6 bits (222), Expect = 6e-22
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
IG RV G +R+ G +G W G++ D + G ++G+++G+ YF G
Sbjct: 34 IGDRVLIGNVQPGILRFKGETSFAKGFWAGVELD-KPEGNNNGTYDGIAYFECKE-KHGI 91
Query: 245 FMRRDKLNFGSS 256
F K++
Sbjct: 92 FAPPQKISHIPE 103
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 90.5 bits (224), Expect = 1e-21
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
IG RV G +R++G + +G W G++ D E GK+DG+ G +YF G
Sbjct: 41 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYFQCQP-KYGL 98
Query: 245 FMRRDKLNFGSS 256
F K+
Sbjct: 99 FAPVHKVTKIGF 110
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 86.3 bits (214), Expect = 4e-21
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 185 IGLRVC----DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHST 240
+G R RG + YVG+ + +GVW G+ +D E GK+DGS GV+YF
Sbjct: 14 VGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYD-EPVGKNDGSVAGVRYFDCDP- 71
Query: 241 TSGSFMRRDKLNFG 254
G F+R + G
Sbjct: 72 KYGGFVRPVDVKVG 85
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 113
Score = 84.6 bits (209), Expect = 3e-20
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 184 DIGLRVC----DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
+G R D RGT+ YVG + G W G+ +D E GK+DGS NG +YF +
Sbjct: 34 SVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYD-EPLGKNDGSVNGKRYFECQA 92
Query: 240 TTSGSFMRRDKLNFGSS 256
G+F++ + G S
Sbjct: 93 -KYGAFVKPSAVTVGDS 108
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 95
Score = 79.4 bits (196), Expect = 1e-18
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 184 DIGLRV-----CDSEGHRGTIRYVGSVEGTQ---GVWYGIDWDSETR--GKHDGSHNGVK 233
D+G V E G +R+ G + + G+++G++ E R G DG + G +
Sbjct: 9 DVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQ 68
Query: 234 YFWTHSTTSGSFMRRDKLNFGSS 256
F G F+ DKL S
Sbjct: 69 LFQCDE-DCGVFVALDKLELIES 90
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 53.1 bits (128), Expect = 2e-08
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 342 LKLLANFP----VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLP 396
++ L FP + L + +NRI + + + L EL L N++V+ G+++ L SL
Sbjct: 54 IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113
Query: 397 NLKYLNLASTNLRNIKLNKEGHYRP 421
+L YL + LRN + + HYR
Sbjct: 114 SLTYLCI----LRN-PVTNKKHYRL 133
Score = 46.6 bits (111), Expect = 3e-06
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLK 399
+ L L +I ++++ + + +N I ++ L LK
Sbjct: 11 QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK---LDGFPLLRRLK 67
Query: 400 YLNLASTNLRNI 411
L + + + I
Sbjct: 68 TLLVNNNRICRI 79
Score = 42.0 bits (99), Expect = 9e-05
Identities = 25/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)
Query: 15 IEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRI-RLKSSSAPAHSYLAEVVF 73
+ + + +D S N + + L+ L+ L + R+ L ++
Sbjct: 37 LGATLDQFDAIDFSDNEIRK---LDGFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTE 92
Query: 74 FVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN 133
+ +L + + L L L+ L +NP+ ++ R I ++ +++L+
Sbjct: 93 LILTNNSLVELGDLDP---LASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLD 146
Query: 134 GSAIERQERQGSEYDYIKEFGAVWLDEKRR 163
++ +ERQ +E + + GA + R
Sbjct: 147 FQKVKLKERQEAEKMFKGKRGAQLAKDIAR 176
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 54.2 bits (131), Expect = 2e-08
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N + T+ F LE L Q +N+ E + SL NL YL+++ T+ R
Sbjct: 83 LDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 410 NI 411
Sbjct: 140 VA 141
Score = 50.4 bits (121), Expect = 4e-07
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 346 ANFP--VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWG-EVNALGSLPNLK 399
P T L+L SN++ +L G+F L +L L N + G + +LK
Sbjct: 24 TGIPSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81
Query: 400 YLNLASTNLRNI 411
YL+L+ + +
Sbjct: 82 YLDLSFNGVITM 93
Score = 49.6 bits (119), Expect = 7e-07
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + G+F SSLE L + N+ + + L NL +L+L+ L
Sbjct: 131 LDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 410 NI 411
+
Sbjct: 189 QL 190
Score = 45.4 bits (108), Expect = 2e-05
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L ++ L P F SSL+ L + NN + L +L+ L+ + ++
Sbjct: 180 LDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 410 NI 411
Sbjct: 237 TS 238
Score = 40.8 bits (96), Expect = 5e-04
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
L SVP G+ SS L L+ N + L L L+L+S L
Sbjct: 19 LTSVPTGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 353 LKLPSNRITTL--DSVPGMFSSLEELYLQENNI 383
L N I T + SSL L L +N+
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 54.8 bits (131), Expect = 3e-08
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 340 DILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398
+ LA + L+ N + +D V + L+EL L N + + L S P L
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 399 KYLNLASTNLRNI 411
LNL +L
Sbjct: 536 VLLNLQGNSLCQE 548
Score = 45.5 bits (107), Expect = 2e-05
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
VT L L NR+ L LE L +N + + + +LP L+ L L + L+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG---VANLPRLQELLLCNNRLQ 521
Query: 410 NIK 412
Sbjct: 522 QSA 524
Score = 31.3 bits (70), Expect = 0.62
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 357 SNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
S + + ++ + L+L ++ + L L + +L+L+ LR +
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRAL 478
Score = 30.1 bits (67), Expect = 1.5
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR 54
P +++L L N L A+ + L LNL+
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQ 541
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 51.7 bits (124), Expect = 4e-08
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 336 YIWADILKLLANFP----VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVN 390
+ L ++N P + L+L NRI D + +L L L N + D +
Sbjct: 55 SLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114
Query: 391 ALGSLPNLKYLNL 403
L L LK L+L
Sbjct: 115 PLKKLECLKSLDL 127
Score = 40.5 bits (95), Expect = 3e-04
Identities = 29/126 (23%), Positives = 39/126 (30%), Gaps = 11/126 (8%)
Query: 22 IEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRI-RLKSSSAPAHSYLAEVVFFVHLGRT 80
+E L L L S +L L+ L L R+ L + G
Sbjct: 51 LEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106
Query: 81 LCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQ 140
L D ++ L L L SL + RE L L L+G E Q
Sbjct: 107 LKDISTLEP---LKKLECLKSLDLFNCEVTNLN---DYRESVFKLLPQLTYLDGYDREDQ 160
Query: 141 ERQGSE 146
E S+
Sbjct: 161 EAPDSD 166
Score = 39.0 bits (91), Expect = 0.001
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L + ++ + F +LE L L ++ V+ L LP LK L L+ +
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFGG 86
Score = 30.9 bits (70), Expect = 0.48
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+++ EL L D NL++L+L + L ++
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV 64
Score = 30.5 bits (69), Expect = 0.65
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 13 DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR 54
D + + +P + L+LS N L + + L+ L+ L+L
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKK-LECLKSLDLF 128
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 54.0 bits (129), Expect = 5e-08
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N I+ ++ + + LE LYL N I D + L L L L+L + +
Sbjct: 112 KSLSLEHNGISDINGLVHL-PQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISD 167
Query: 411 I 411
I
Sbjct: 168 I 168
Score = 50.5 bits (120), Expect = 6e-07
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
+ P VT L L N++T + + + +L L+L EN I D +++L L LK L+L
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTNL-KNLGWLFLDENKIKD---LSSLKDLKKLKSLSL 116
Query: 404 ASTNLRNIK 412
+ +I
Sbjct: 117 EHNGISDIN 125
Score = 49.7 bits (118), Expect = 1e-06
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L N+I+ + + G+ + L+ LYL +N+I D + AL L NL L L S N
Sbjct: 158 LSLEDNQISDIVPLAGL-TKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKP 213
Query: 413 LNK 415
+N
Sbjct: 214 INH 216
Score = 48.9 bits (116), Expect = 2e-06
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L + P + L L +N+IT + + + + L+ L L++N I D + L L L+ L L
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLSRL-TKLDTLSLEDNQISD---IVPLAGLTKLQNLYL 182
Query: 404 ASTNLRNIK 412
+ ++ +++
Sbjct: 183 SKNHISDLR 191
Score = 47.8 bits (113), Expect = 5e-06
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
F L +T + + +S++++ ++I V + LPN+ L L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKS---VQGIQYLPNVTKLFL 72
Query: 404 ASTNLRNIK 412
L +IK
Sbjct: 73 NGNKLTDIK 81
Score = 30.5 bits (68), Expect = 1.4
Identities = 4/39 (10%), Positives = 10/39 (25%), Gaps = 3/39 (7%)
Query: 373 LEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ E I + + NL ++ +
Sbjct: 1 MGETITVSTPIKQ---IFPDDAFAETIKDNLKKKSVTDA 36
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 50.8 bits (122), Expect = 5e-08
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 336 YIWADILKLLANFP----VTCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVN 390
L +AN P + L+L NR++ V +L L L N I D +
Sbjct: 48 STINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107
Query: 391 ALGSLPNLKYLNL 403
L L NLK L+L
Sbjct: 108 PLKKLENLKSLDL 120
Score = 45.4 bits (108), Expect = 4e-06
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNI 383
+ L L N + L F + L + +T++ ++P + + L++L L +N +
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL-NKLKKLELSDNRV 76
Query: 384 VDWGEVNALGSLPNLKYLNLASTNLRNIK 412
E PNL +LNL+ ++++
Sbjct: 77 SGGLE-VLAEKCPNLTHLNLSGNKIKDLS 104
Score = 39.3 bits (92), Expect = 6e-04
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 333 NMGYIWADILKLLANFPVTCLKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGEVN 390
MG L+ V L L ++R L+ + F LE L + +
Sbjct: 2 EMGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IA 58
Query: 391 ALGSLPNLKYLNLASTNLRNI 411
L L LK L L+ +
Sbjct: 59 NLPKLNKLKKLELSDNRVSGG 79
Score = 32.0 bits (73), Expect = 0.15
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 11/114 (9%)
Query: 22 IEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRI-RLKSSSAPAHSYLAEVVFFVHLGRT 80
+E L L S +L L+ L L R+ + G
Sbjct: 44 LEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99
Query: 81 LCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNG 134
+ D ++ L L L SL + RE L L L+G
Sbjct: 100 IKDLSTIEP---LKKLENLKSLDLFNCEVTNLN---DYRENVFKLLPQLTYLDG 147
Score = 30.0 bits (68), Expect = 0.83
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 13 DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL 53
+ + + P + L+LS N + + + L++L+ L+L
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK-LENLKSLDL 120
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 53.9 bits (130), Expect = 6e-08
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 333 NMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNAL 392
+ + L + L L N + + L+ L Q + + E +A
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 393 GSLPNLKYLNLASTNLRNI 411
SL L YL+++ TN +
Sbjct: 421 LSLEKLLYLDISYTNTKID 439
Score = 48.9 bits (117), Expect = 2e-06
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + G+F +SL L + N+ D N + NL +L+L+ L
Sbjct: 429 LDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486
Query: 410 NI 411
I
Sbjct: 487 QI 488
Score = 48.1 bits (115), Expect = 4e-06
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
L L N I + PG F +SLE L E + E +G L LK LN+A +
Sbjct: 85 LILTGNPIQSFS--PGSFSGLTSLENLVAVETKL--ASLESFPIGQLITLKKLNVAHNFI 140
Query: 409 RNIKLNK 415
+ KL
Sbjct: 141 HSCKLPA 147
Score = 46.2 bits (110), Expect = 2e-05
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
+ L N + L FS L+ L L I + E A L +L L L
Sbjct: 34 TKNIDLSFNPLKILK--SYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGN 90
Query: 407 NLRNI 411
+++
Sbjct: 91 PIQSF 95
Score = 44.6 bits (106), Expect = 5e-05
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L ++ +L+ +L++L + N I +L NL +++L+ ++
Sbjct: 109 LVAVETKLASLE--SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 410 NI 411
I
Sbjct: 167 TI 168
Score = 43.9 bits (104), Expect = 8e-05
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 335 GYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNA 391
+++ N +T L L ++ + G+F L+ L + NN++ +
Sbjct: 462 DNTLSNVFANTTN--LTFLDLSKCQLEQIS--WGVFDTLHRLQLLNMSHNNLLFLDS-SH 516
Query: 392 LGSLPNLKYLNLASTNLRNI 411
L +L L+ + +
Sbjct: 517 YNQLYSLSTLDCSFNRIETS 536
Score = 42.3 bits (100), Expect = 2e-04
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 353 LKLPSNRITT--LDSVPGMFSSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTNL 408
LK+ N L +V ++L L L + + + WG +L L+ LN++ NL
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG---VFDTLHRLQLLNMSHNNL 509
Query: 409 RNI 411
+
Sbjct: 510 LFL 512
Score = 41.2 bits (97), Expect = 5e-04
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 325 HIHTLTLGN--MGYIWADILKLLANFPVTC--LKLPSNRITTLDSVPGMFSSLEELYLQE 380
++ + L + I + L+ L P L + N I + L EL L+
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213
Query: 381 NNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
N L +L L L ++
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244
Score = 40.8 bits (96), Expect = 7e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L + ++ ++ L+ L L N +LP+L YL+L+ L
Sbjct: 312 LSIIRCQLKQFPTLD--LPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALSFS 365
Score = 40.4 bits (95), Expect = 0.001
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L VP + SS + + L N + + + L++L+L+ + I
Sbjct: 23 LSKVPDDIPSSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETI 71
Score = 38.1 bits (89), Expect = 0.005
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 333 NMGYIWADILKLLANFPVTCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNA 391
N+ I++ L + + +L + D V +++ + L +I +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLED 302
Query: 392 LGSLPNLKYLNLASTNLRNI 411
+ + L++ L+
Sbjct: 303 VPKHFKWQSLSIIRCQLKQF 322
Score = 36.5 bits (85), Expect = 0.013
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + N + LD ++ SL L N I +L + NL + ++
Sbjct: 502 LNMSHNNLLFLD--SSHYNQLYSLSTLDCSFNRIETSKG-ILQHFPKSLAFFNLTNNSVA 558
Score = 35.0 bits (81), Expect = 0.052
Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 341 ILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400
+ +L+ L + ++ + +++E L N ++ L N+
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLC--DVTIDEFRLTYTNDF-SDDIVKFHCLANVSA 289
Query: 401 LNLASTNLRNI 411
++LA +++ +
Sbjct: 290 MSLAGVSIKYL 300
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 52.9 bits (128), Expect = 7e-08
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
LK+ +N+IT L + + S L L + N I D +NA+ L LK LN+ S + +
Sbjct: 224 NSLKIGNNKITDLSPLANL-SQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQISD 279
Query: 411 IK 412
I
Sbjct: 280 IS 281
Score = 50.6 bits (122), Expect = 4e-07
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N+I + + + +SL N I D + + ++ L L + + + +
Sbjct: 180 YSLSLNYNQIEDISPLASL-TSLHYFTAYVNQITD---ITPVANMTRLNSLKIGNNKITD 235
Query: 411 IK 412
+
Sbjct: 236 LS 237
Score = 48.3 bits (116), Expect = 2e-06
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L + SN+I+ + + + S L L+L N + + ++ +G L NL L L+ ++ +
Sbjct: 268 KMLNVGSNQISDISVLNNL-SQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITD 325
Query: 411 I 411
I
Sbjct: 326 I 326
Score = 48.3 bits (116), Expect = 2e-06
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L +N + S + L L + E+ + D V + +L +L L+L + +I
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIEDIS 193
Score = 47.2 bits (113), Expect = 4e-06
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L + +++ + + + L L L N I D ++ L SL +L Y + +I
Sbjct: 160 LTVTESKVKDVTPI-ANLTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQITDIT 215
Score = 47.2 bits (113), Expect = 5e-06
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEEL 376
QIFP + + + +T L + ++ ++ + ++LE L
Sbjct: 13 NQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGI-EYLTNLEYL 71
Query: 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L N I D ++ L +L L L + + + +I
Sbjct: 72 NLNGNQITD---ISPLSNLVKLTNLYIGTNKITDI 103
Score = 46.4 bits (111), Expect = 8e-06
Identities = 10/61 (16%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L + I+ + + + + + L L N+ + +++ L ++ L YL + + +++
Sbjct: 113 RELYLNEDNISDISPLANL-TKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKD 169
Query: 411 I 411
+
Sbjct: 170 V 170
Score = 46.4 bits (111), Expect = 1e-05
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
A+ L +T + + S+ +L + + + + L NL+YLNL
Sbjct: 18 DADLAEGIRAVLQKASVTDVVTQ-EELESITKLVVAGEKVAS---IQGIEYLTNLEYLNL 73
Query: 404 ASTNLRNIK 412
+ +I
Sbjct: 74 NGNQITDIS 82
Score = 45.6 bits (109), Expect = 2e-05
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L N+IT + + L LY+ N I D ++AL +L NL+ L L N+ +I
Sbjct: 71 LNLNGNQITDISPL-SNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDIS 126
Score = 45.6 bits (109), Expect = 2e-05
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L+N +T L + +N+IT + ++ + ++L ELYL E+NI D ++ L +L + LNL
Sbjct: 84 LSNLVKLTNLYIGTNKITDISALQNL-TNLRELYLNEDNISD---ISPLANLTKMYSLNL 139
Query: 404 ASTNL 408
+ +
Sbjct: 140 GANHN 144
Score = 45.2 bits (108), Expect = 2e-05
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L++ +N+I+ +++V + + L+ L + N I D ++ L +L L L L + L N
Sbjct: 246 TWLEIGTNQISDINAVKDL-TKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGN 301
Query: 411 I 411
Sbjct: 302 E 302
Score = 43.7 bits (104), Expect = 6e-05
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L +N++ D + +L L+L +N+I D + L SL + + A+ ++
Sbjct: 292 LFLNNNQLGNED--MEVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSADFANQVIK 346
Score = 29.4 bits (67), Expect = 1.9
Identities = 4/40 (10%), Positives = 10/40 (25%), Gaps = 3/40 (7%)
Query: 373 LEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L I ++ L L ++ ++
Sbjct: 2 AATLATLPAPI---NQIFPDADLAEGIRAVLQKASVTDVV 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 8e-08
Identities = 80/542 (14%), Positives = 144/542 (26%), Gaps = 214/542 (39%)
Query: 11 THDEIEQA--VP-------------FIEDL-DLSRNL-----------LASWFAVGEITC 43
+H +E VP F + L + + L F
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF------- 64
Query: 44 QLKHLRHLNLRIRLKSSSAPAHSYLAEVVF--F---------VH-LGRTLCDED---FVK 88
L ++ L ++ S + + F +H L L E+ VK
Sbjct: 65 -LGYVSSL-----VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 89 EGSLL-HYLPKLSSLRFTKNPILAEE-----RVVSSRE-KTIARLGGLKLLNGSAIERQE 141
L+ +Y+ ++ K P + R V + +A GG
Sbjct: 119 TKELIKNYI---TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG------------- 162
Query: 142 RQGSEYDYIKEFGAVW------LDE--KRRAEFLE---ANPRVGDNYFQ----VME---- 182
QG+ DY +E ++ + + K AE L + F ++E
Sbjct: 163 -QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 183 -----DD------------IGL-------RVCDSEG-HRGTIRYVGSVEGTQGVWYGI-- 215
D IG+ G G +R ++G G G+
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR--SYLKGATGHSQGLVT 279
Query: 216 --------DWDSETRGKHDGSHNGVKY-FW----THSTTSGSF----MRRDKLNFG---S 255
W+S + F+ + + + D L
Sbjct: 280 AVAIAETDSWESF----FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 256 SFM---EALHRKYVETDNELTVRENVEEVKASI---NAP--F------LELVGFD-QVHE 300
S M L ++ V+ T + I N L G + + +
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 301 -----EQNTNK--------------LPI--P------NDTSGVMEQIFPQGHI------- 326
+ ++ LP+ P S ++ + + ++
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 327 -----HTLTLGNM----GYIWADILKLLANFPV---TCLKLPSNRITTLDSVPGMFSSLE 374
T ++ G I I+ + PV T + + I LD PG S L
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI--LDFGPGGASGLG 513
Query: 375 EL 376
L
Sbjct: 514 VL 515
Score = 33.5 bits (76), Expect = 0.17
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 19/103 (18%)
Query: 284 SINAPFL---ELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWAD 340
S+ L +EQ LP P + ++ P L +GY+ +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE--PTTPAE-LVGKFLGYVSSL 71
Query: 341 ILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNI 383
+ L L + E YL+ N+I
Sbjct: 72 VEPSKVGQFDQVLNL-------------CLTEFENCYLEGNDI 101
Score = 31.6 bits (71), Expect = 0.68
Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 61/182 (33%)
Query: 252 NFGSSFMEALHRKYVETDN--ELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPI 309
+G S ++ + +N LT+ E+ K I + ++ F+
Sbjct: 1656 TYGFSILD------IVINNPVNLTIHFGGEKGKR-IRENYSAMI-FET------------ 1695
Query: 310 PNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSN---RITTLDSV 366
D E+IF + + H+ Y + L +T +
Sbjct: 1696 IVDGKLKTEKIFKEINEHST-----SYTFRS--------EKGLLSATQFTQPALTLM-EK 1741
Query: 367 PGMFSSLEELYLQENNIVDW--------GEVNALGSLPNLKYLNLASTNLRNIKLNKEGH 418
F L+ + I GE AL SL + +++ S +++
Sbjct: 1742 -AAFEDLKS----KGLIPADATFAGHSLGEYAALASLAD--VMSIESL----VEVV---F 1787
Query: 419 YR 420
YR
Sbjct: 1788 YR 1789
Score = 28.5 bits (63), Expect = 6.0
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 23/100 (23%)
Query: 5 VSNAGKTHDE-----IEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKS 59
+ N T D+ I + P I + L+ + V T +L LR LK
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAH------YVV---TAKLLGFTPGELRSYLKG 269
Query: 60 SSAPAHSYLAEVV--FFVHLGRTLCDEDFVKEGSL-LHYL 96
++ HS +V + + E F + L
Sbjct: 270 AT--GHS--QGLVTAVAIAETDS--WESFFVSVRKAITVL 303
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 52.7 bits (127), Expect = 9e-08
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+++ ITT+ G+ SL EL+L N I +L L NL L L+ ++ +
Sbjct: 176 IRIADTNITTIP--QGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAV 231
Score = 52.3 bits (126), Expect = 9e-08
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
L++ N IT + +F+ + + L N + G E A + L Y+ +A TN+
Sbjct: 126 LRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183
Query: 409 RNI 411
I
Sbjct: 184 TTI 186
Score = 51.5 bits (124), Expect = 2e-07
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L N++ L M +L+EL + EN I + + L + + L + L++
Sbjct: 105 LYLSKNQLKELP--EKMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSG 161
Query: 413 LN 414
+
Sbjct: 162 IE 163
Score = 47.7 bits (114), Expect = 3e-06
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N+IT +D +L +L L N+I + +L + P+L+ L+L + L
Sbjct: 197 LHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV 253
Query: 410 NI 411
+
Sbjct: 254 KV 255
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
L L +N+IT + G F +L L L N I A L L+ L L+
Sbjct: 54 TALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKN 110
Query: 407 NLRNI 411
L+ +
Sbjct: 111 QLKEL 115
Score = 42.3 bits (100), Expect = 2e-04
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
L L N I+ +D G L EL+L N +V +V L ++ + L + N+
Sbjct: 221 LGLSFNSISAVD--NGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNI 275
Query: 409 RNIKLN 414
I N
Sbjct: 276 SAIGSN 281
Score = 40.8 bits (96), Expect = 5e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L+ VP + L LQ N I + + +L NL L L + + I
Sbjct: 43 LEKVPKDLPPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKI 91
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIV-----DWGEVNALGSLPNLKYLNLA 404
L L +N++ VPG + ++ +YL NNI D+ + ++L
Sbjct: 245 LHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301
Query: 405 STNLRNIKL 413
S ++ ++
Sbjct: 302 SNPVQYWEI 310
Score = 38.4 bits (90), Expect = 0.003
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
++L +N + + G F L + + + NI + G P+L L+L
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQ-GLPPSLTELHLDGNK 203
Query: 408 LRNI 411
+ +
Sbjct: 204 ITKV 207
Score = 37.7 bits (88), Expect = 0.006
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 353 LKLPSNRITTLDS-------VPGMFSSLEELYLQENNIVDWG-EVNALGSLPNLKYLNLA 404
+ L +N I+ + S +S + L N + W + + + + L
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327
Query: 405 S 405
+
Sbjct: 328 N 328
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.10.1
Length = 92
Score = 48.2 bits (114), Expect = 1e-07
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 185 IGLRVC---DSEGHRGTIRYVGSVEG--TQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
I RV GT+ + + G + G + G+D D+ G DG +GV+
Sbjct: 12 INSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPI-GNWDGRFDGVQLCSFAC 70
Query: 240 TTSGSFMRRDKL 251
S + + +
Sbjct: 71 VESTILLHINDI 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 50.7 bits (122), Expect = 1e-07
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L + + T + + G+ S+LE L + ++ + L L +L L+++ + +
Sbjct: 71 LTINNIHATNYNPISGL-SNLERLRIMGKDVTSDK-IPNLSGLTSLTLLDISHSAHDDSI 128
Query: 413 LNK 415
L K
Sbjct: 129 LTK 131
Score = 45.3 bits (108), Expect = 7e-06
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 328 TLTLGNMGYIWADILKLLANFP-VTCLKLPSN-RITTLDSVPGMFSSLEELYLQENNIVD 385
L + + IL + P V + L N IT + + + L+ L +Q + + D
Sbjct: 116 LLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL-PELKSLNIQFDGVHD 173
Query: 386 WGEVNALGSLPNLKYLNLASTNLRNIK 412
+ P L L S + K
Sbjct: 174 ---YRGIEDFPKLNQLYAFSQTIGGKK 197
Score = 44.9 bits (107), Expect = 1e-05
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 351 TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
T L + + + + L N + ++ L +LP LK LN+ +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--TDIMPLKTLPELKSLNIQFDGVH 172
Query: 410 NIK 412
+ +
Sbjct: 173 DYR 175
Score = 39.2 bits (92), Expect = 0.001
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 347 NFP------VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400
N P L + + +SL + L N+ D + + N+K
Sbjct: 16 NIPDSTFKAYLNGLLGQSSTANIT--EAQMNSLTYITLANINVTD---LTGIEYAHNIKD 70
Query: 401 LNLASTNLRNIK 412
L + + + N
Sbjct: 71 LTINNIHATNYN 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 52.0 bits (125), Expect = 1e-07
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L S +IT + + G+ S+L+ LYL N I + ++ L L NL+YL++ + + +
Sbjct: 110 KTLDLTSTQITDVTPLAGL-SNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSD 165
Query: 411 I 411
+
Sbjct: 166 L 166
Score = 51.6 bits (124), Expect = 2e-07
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
LA + L L N+IT + + G+ ++L+ L + + D + L +L L L
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGL-TNLQYLSIGNAQVSD---LTPLANLSKLTTLKA 180
Query: 404 ASTNLRNI 411
+ +I
Sbjct: 181 DDNKISDI 188
Score = 49.7 bits (119), Expect = 6e-07
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 309 IPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRITTLDSVP 367
I T+ + IFP + G A+ +T L +TT++ V
Sbjct: 3 ITQPTA--INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGV- 59
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
++L L L++N I D + L +L + L L+ L+N+
Sbjct: 60 QYLNNLIGLELKDNQITD---LAPLKNLTKITELELSGNPLKNVS 101
Score = 49.7 bits (119), Expect = 7e-07
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L N +T L+L N + + ++ G+ S++ L L I D L L NL+ L L
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGL-QSIKTLDLTSTQITDV---TPLAGLSNLQVLYL 136
Query: 404 ASTNLRNIK 412
+ NI
Sbjct: 137 DLNQITNIS 145
Score = 48.5 bits (116), Expect = 2e-06
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
LAN +T LK N+I+ + + + +L E++L+ N I D V+ L + NL + L
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASL-PNLIEVHLKNNQISD---VSPLANTSNLFIVTL 224
Query: 404 ASTNLRNIKLNK 415
+ + N +
Sbjct: 225 TNQTITNQPVFY 236
Score = 31.6 bits (72), Expect = 0.40
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
+ L +N+I+ + + S+L + L I + + + +
Sbjct: 200 VHLKNNQISDVSPLANT-SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPAT 258
Query: 413 LNKEGHY 419
++ G Y
Sbjct: 259 ISDNGTY 265
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 50.5 bits (121), Expect = 2e-07
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L + N+I +L + + +L LY+ N I +WGE++ L +L L+ L L
Sbjct: 98 LWISYNQIASLSGIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147
Score = 48.1 bits (115), Expect = 9e-07
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L I +D+ + + L L NNI ++++L + NL+ L+L ++ I
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIKKI 85
Score = 45.8 bits (109), Expect = 7e-06
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N I ++++ + +LEEL++ N I ++ + L NL+ L +++ + N
Sbjct: 73 RILSLGRNLIKKIENLDAVADTLEELWISYNQIAS---LSGIEKLVNLRVLYMSNNKITN 129
Query: 411 IK 412
Sbjct: 130 WG 131
Score = 42.4 bits (100), Expect = 7e-05
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 340 DILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398
+ L+ L L +N I + S+ GM +L L L N I ++A+ L
Sbjct: 39 KMDATLSTLKACKHLALSTNNIEKISSLSGM-ENLRILSLGRNLIKKIENLDAV--ADTL 95
Query: 399 KYLNLASTNLRNIK 412
+ L ++ + ++
Sbjct: 96 EELWISYNQIASLS 109
Score = 39.3 bits (92), Expect = 8e-04
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 93 LHYLPKLSSLRFTKNPILAEERVVSS----REKTIARLGGLKLLNGSAIERQERQGSE 146
L L KL L NP+ + + ++ R + + RL LK L+G ++ ER+ +
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQAN 193
Score = 32.7 bits (75), Expect = 0.12
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 351 TCLKLPSNRITTLDSVPGM--FSSLEELYLQENNIVDWGEVNA---------LGSLPNLK 399
L + +N+IT + + LE+L L N + + + N + LPNLK
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177
Query: 400 YLN 402
L+
Sbjct: 178 KLD 180
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 51.2 bits (123), Expect = 2e-07
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L + + L L N I+ ++ + + LE LYL N I D + L L L L+L
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKITD---ITVLSRLTKLDTLSL 163
Query: 404 ASTNLRNI 411
+ +I
Sbjct: 164 EDNQISDI 171
Score = 49.7 bits (119), Expect = 7e-07
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L N+I+ + + G+ + L+ LYL +N+I D + AL L NL L L S N
Sbjct: 161 LSLEDNQISDIVPLAGL-TKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKP 216
Query: 413 LNK 415
+N
Sbjct: 217 INH 219
Score = 48.9 bits (117), Expect = 1e-06
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
+ P VT L L N++T + + + +L L+L EN + D +++L L LK L+L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKPLANL-KNLGWLFLDENKVKD---LSSLKDLKKLKSLSL 119
Query: 404 ASTNLRNIK 412
+ +I
Sbjct: 120 EHNGISDIN 128
Score = 47.7 bits (114), Expect = 3e-06
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L N++ L S+ + L+ L L+ N I D +N L LP L+ L L + + +I
Sbjct: 95 LFLDENKVKDLSSLKDL-KKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDIT 150
Score = 46.2 bits (110), Expect = 7e-06
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L +T + + +S++++ ++I V + LPN+ L L L +IK
Sbjct: 29 DNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLTDIK 84
Score = 27.7 bits (62), Expect = 7.5
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 22 IEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLG--R 79
+E L L N + + +L L L+L + ++++V L +
Sbjct: 136 LESLYLGNNKITDI----TVLSRLTKLDTLSLE----------DNQISDIVPLAGLTKLQ 181
Query: 80 TL-CDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE 138
L ++ + + L L L L L + + + + +K +GS +
Sbjct: 182 NLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP---INHQSNLVVPNTVKNTDGSLVT 238
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 52.0 bits (125), Expect = 2e-07
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L L N + T+ S LE L Q +N+ E + SL NL YL+++ T+ R
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Score = 45.8 bits (109), Expect = 2e-05
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 353 LKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L + +L++ P G +L+EL + N I + +L NL++L+L+S +++I
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 45.8 bits (109), Expect = 2e-05
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N I +L G F SSL++L E N+ E +G L LK LN+A ++
Sbjct: 81 LILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137
Query: 410 NIKL 413
+ KL
Sbjct: 138 SFKL 141
Score = 45.4 bits (108), Expect = 3e-05
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + G+F SSLE L + N+ + + L NL +L+L+ L
Sbjct: 426 LDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 410 NI 411
+
Sbjct: 484 QL 485
Score = 44.2 bits (105), Expect = 5e-05
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 350 VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N + L F L+ L L I E A SL +L L L +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI 88
Query: 409 RNI 411
+++
Sbjct: 89 QSL 91
Score = 42.3 bits (100), Expect = 2e-04
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L I T++ G + S L L L N I + A L +L+ L TNL
Sbjct: 57 LDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA 113
Query: 410 NI 411
++
Sbjct: 114 SL 115
Score = 40.8 bits (96), Expect = 6e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L ++ L P F SSL+ L + NN + L +L+ L+ + ++
Sbjct: 475 LDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM 531
Query: 410 NIKLN 414
K
Sbjct: 532 TSKKQ 536
Score = 40.8 bits (96), Expect = 8e-04
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLRNI 411
L SN+ S + SLE L L N + G + +LKYL+L+ + +
Sbjct: 330 LTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388
Score = 38.9 bits (91), Expect = 0.003
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+P + S + L L N + + S P L+ L+L+ ++ I
Sbjct: 19 FYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 67
Score = 38.1 bits (89), Expect = 0.005
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 353 LKLPSNRITT--LDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
LK+ N L + +L L L + + A SL +L+ LN++ N +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFS 508
Query: 411 I 411
+
Sbjct: 509 L 509
Score = 36.5 bits (85), Expect = 0.017
Identities = 12/59 (20%), Positives = 18/59 (30%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L L N + + L +L L+ N + L L+ L RN
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Score = 34.6 bits (80), Expect = 0.062
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 20/106 (18%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNI 383
I L + Y DI+ L V+ L S I + + L L
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKF 316
Query: 384 ------------------VDWGEVNALGSLPNLKYLNLASTNLRNI 411
G + LP+L++L+L+ L
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Score = 33.8 bits (78), Expect = 0.092
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 311 NDTSGVMEQIFPQGHIHTLTL-GNM--GYIWADILKLLANFPVTCLKLPS----NRITTL 363
N + + F + +H LTL N + ++ LA V L L +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 364 DSVPGMFSSLEELYLQEN-----NIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
D L L ++E + ++ L N+ +L S + +
Sbjct: 247 D--KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Score = 29.2 bits (66), Expect = 3.1
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR 54
+++L+++ NL+ S F + E L +L HL+L
Sbjct: 124 KTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLS 157
Score = 28.8 bits (65), Expect = 3.5
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 353 LKLPSNRITTL--DSVPGMFSSLEELYLQENNI 383
L N I T + SSL L L +N+
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 51.7 bits (124), Expect = 2e-07
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
L L N+I + F LE L L N+I E+ A L NL L L
Sbjct: 67 RLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNR 123
Query: 408 LRNI 411
L I
Sbjct: 124 LTTI 127
Score = 49.0 bits (117), Expect = 2e-06
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L +N I ++ F+ SL L L E + + A L NL+YLNLA NLR
Sbjct: 141 LWLRNNPIESIP--SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 410 NI 411
I
Sbjct: 199 EI 200
Score = 47.8 bits (114), Expect = 4e-06
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N ++ + PG F L++L++ ++ I E NA +L +L +NLA NL
Sbjct: 212 LDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLT 268
Query: 410 NI 411
+
Sbjct: 269 LL 270
Score = 47.1 bits (112), Expect = 6e-06
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
L+L N I T++ G F ++L L L +N + + G A L LK L L +
Sbjct: 93 LQLSRNHIRTIE--IGAFNGLANLNTLELFDNRLTTIPNG---AFVYLSKLKELWLRNNP 147
Query: 408 LRNI 411
+ +I
Sbjct: 148 IESI 151
Score = 45.9 bits (109), Expect = 1e-05
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 358 NRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
R++ + G F S+L L L N+ E+ L L L L+L+ +L I
Sbjct: 171 KRLSYIS--EGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAI 222
Score = 42.4 bits (100), Expect = 2e-04
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L VP G+ ++ L L EN I N+ L +L+ L L+ ++R I
Sbjct: 55 LREVPDGISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTI 103
Score = 38.6 bits (90), Expect = 0.003
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + ++I ++ F SL E+ L NN+ + L +L+ ++L
Sbjct: 236 LWMIQSQIQVIE--RNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWN 292
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 51.7 bits (124), Expect = 2e-07
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKY 400
P L L N I + F LE L L N+I EV A L +L
Sbjct: 71 QGIPSNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNT 127
Query: 401 LNLASTNLRNI 411
L L L I
Sbjct: 128 LELFDNWLTVI 138
Score = 50.1 bits (120), Expect = 7e-07
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L +N I ++ F+ SL L L E +++ A L NLKYLNL N++
Sbjct: 152 LWLRNNPIESIP--SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
Query: 410 NI 411
++
Sbjct: 210 DM 211
Score = 47.4 bits (113), Expect = 5e-06
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L++ N + PG F SL++L++ + + E NA L +L LNLA NL
Sbjct: 223 LEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLS 279
Query: 410 NI 411
++
Sbjct: 280 SL 281
Score = 47.0 bits (112), Expect = 6e-06
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN-L 408
L+L N +T + G F L EL+L+ N I A +P+L L+L L
Sbjct: 128 LELFDNWLTVIP--SGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKL 184
Query: 409 RNI 411
I
Sbjct: 185 EYI 187
Score = 46.3 bits (110), Expect = 1e-05
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 358 NRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
++ + G F +L+ L L NI ++ L L L+ L ++ + I
Sbjct: 182 KKLEYIS--EGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEI 233
Score = 38.2 bits (89), Expect = 0.005
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + +++++ ++ F SL EL L NN+ + L L L+L
Sbjct: 247 LWVMNSQVSLIE--RNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWN 303
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 51.2 bits (123), Expect = 3e-07
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L + N + + P + SSL EL + +N I + L N+ + + L N
Sbjct: 107 LYISKNHLVEIP--PNLPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSG 163
Query: 413 LN 414
Sbjct: 164 FE 165
Score = 50.8 bits (122), Expect = 3e-07
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L++ ++T + + +L EL+L N I L L L L +R I
Sbjct: 177 LRISEAKLTGIP--KDLPETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMI 232
Score = 46.2 bits (110), Expect = 1e-05
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N+I ++ L L L N I +L LP L+ L+L + L
Sbjct: 198 LHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS 254
Query: 410 NI 411
+
Sbjct: 255 RV 256
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
T L L +N I+ L F L L L N I A L L+ L ++
Sbjct: 56 TTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKN 112
Query: 407 NLRNI 411
+L I
Sbjct: 113 HLVEI 117
Score = 44.2 bits (105), Expect = 4e-05
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
L++ NRI + G+FS ++ + + N + + G E A L L YL ++ L
Sbjct: 128 LRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184
Query: 409 RNI 411
I
Sbjct: 185 TGI 187
Score = 40.4 bits (95), Expect = 6e-04
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L +VP + L LQ N+I + + + L +L L L + + I
Sbjct: 45 LKAVPKEISPDTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNNKISKI 93
Score = 36.9 bits (86), Expect = 0.009
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIV-----DWGEVNALGSLPNLKYLNLASTN 407
L L +N+++ + + L+ +YL NNI D+ V ++L +
Sbjct: 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305
Query: 408 LRNIKL 413
+ ++
Sbjct: 306 VPYWEV 311
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 51.5 bits (124), Expect = 3e-07
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L + SN+++ + + + ++LE L N I D + LG L NL L+L L++
Sbjct: 180 ERLDISSNKVSDISVLAKL-TNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLKD 235
Query: 411 I 411
I
Sbjct: 236 I 236
Score = 50.3 bits (121), Expect = 6e-07
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T LKL +N+I+ + + G+ ++L L L EN + D ++ + +L NL YL L N+ +
Sbjct: 268 TELKLGANQISNISPLAGL-TALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISD 323
Query: 411 IK 412
I
Sbjct: 324 IS 325
Score = 50.3 bits (121), Expect = 7e-07
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L +N+I+ + + + ++L+EL L N + D + L SL NL L+LA+ + N+
Sbjct: 204 LIATNNQISDITPLGIL-TNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNL 258
Score = 48.4 bits (116), Expect = 2e-06
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N++ + ++ + ++L +L L N I + + L L L L L + + N
Sbjct: 224 DELSLNGNQLKDIGTLASL-TNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISN 279
Query: 411 I 411
I
Sbjct: 280 I 280
Score = 48.0 bits (115), Expect = 3e-06
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L L N I+ + V + + L+ L+ N + D V++L +L N+ +L+ + ++
Sbjct: 314 LTLYFNNISDISPVSSL-TKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDL 368
Score = 48.0 bits (115), Expect = 3e-06
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
VT L+ I ++D V ++L ++ N + D + L +L L + + + +
Sbjct: 48 VTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIA 103
Query: 410 NI 411
+I
Sbjct: 104 DI 105
Score = 48.0 bits (115), Expect = 4e-06
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
+ +N++T + + + + L ++ + N I D + L +L NL L L + + +I
Sbjct: 73 INFSNNQLTDITPLKNL-TKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITDID 128
Score = 47.7 bits (114), Expect = 4e-06
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
+ + +N+I + + ++L L L N I D ++ L +L NL L L+S + +
Sbjct: 93 VDILMNNNQIADITPL-ANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISD 148
Query: 411 I 411
I
Sbjct: 149 I 149
Score = 47.7 bits (114), Expect = 5e-06
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L+L N++ + + + +L L L NNI D ++ + SL L+ L + + +
Sbjct: 290 TNLELNENQLEDISPISNL-KNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNNKVSD 345
Query: 411 I 411
+
Sbjct: 346 V 346
Score = 45.7 bits (109), Expect = 2e-05
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L L +N+I+ L + G+ + L EL L N I + ++ L L L L L L +
Sbjct: 246 TDLDLANNQISNLAPLSGL-TKLTELKLGANQISN---ISPLAGLTALTNLELNENQLED 301
Query: 411 IK 412
I
Sbjct: 302 IS 303
Score = 45.3 bits (108), Expect = 2e-05
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 342 LKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401
LA L +T S + L I ++ + L NL +
Sbjct: 20 DTALAE--KMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKS---IDGVEYLNNLTQI 73
Query: 402 NLASTNLRNI 411
N ++ L +I
Sbjct: 74 NFSNNQLTDI 83
Score = 45.3 bits (108), Expect = 2e-05
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 357 SNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
N++T L + ++LE L + N + D ++ L L NL+ L + + +I
Sbjct: 164 GNQVTDLKPL-ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDI 214
Score = 45.0 bits (107), Expect = 3e-05
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L +N+++ + S+ + +++ L N I D + L +L + L L N
Sbjct: 336 LFFYNNKVSDVSSLANL-TNINWLSAGHNQISD---LTPLANLTRITQLGLNDQAWTNAP 391
Query: 413 LN 414
+N
Sbjct: 392 VN 393
Score = 44.6 bits (106), Expect = 4e-05
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L L +N+IT +D + + ++L L L N I D ++AL L +L+ L+ + +
Sbjct: 115 TGLTLFNNQITDIDPLKNL-TNLNRLELSSNTISD---ISALSGLTSLQQLSF-GNQVTD 169
Query: 411 IK 412
+K
Sbjct: 170 LK 171
Score = 44.2 bits (105), Expect = 5e-05
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L+L SN I+ + ++ G+ +SL++L N + D + L +L L+ L+++S + +I
Sbjct: 139 LELSSNTISDISALSGL-TSLQQLSFG-NQVTD---LKPLANLTTLERLDISSNKVSDIS 193
Score = 36.5 bits (85), Expect = 0.014
Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 355 LPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
I + + + + + L + N+ D + L + L +++I
Sbjct: 9 TQDTPINQIFTDTAL-AEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSID 62
Score = 29.9 bits (68), Expect = 1.7
Identities = 6/82 (7%), Positives = 19/82 (23%), Gaps = 22/82 (26%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV--------------------- 389
L N+I+ L + + + + +L L + +
Sbjct: 356 NWLSAGHNQISDLTPLANL-TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414
Query: 390 NALGSLPNLKYLNLASTNLRNI 411
+ + ++
Sbjct: 415 ATISDGGSYTEPDITWNLPSYT 436
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 51.2 bits (123), Expect = 4e-07
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 325 HIHTLTLGN----MGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELY 377
++ L+L N + + + LA+ P+ L L N+I+ ++ FS LE L
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SDAFSWLGHLEVLD 411
Query: 378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L N I L N+ + L+ +
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Score = 48.1 bits (115), Expect = 4e-06
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L + +DS P F +L L L NNI + + + L L L+ L+L NL
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLA 517
Query: 410 NI 411
+
Sbjct: 518 RL 519
Score = 46.9 bits (112), Expect = 8e-06
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 350 VTCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
+T L L N++ L + +S L L + N I E LP LK LNL L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNEL 85
Query: 409 RNI 411
+
Sbjct: 86 SQL 88
Score = 45.8 bits (109), Expect = 2e-05
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L SN I + F +L L L N + ++ L NL+ L L++ ++
Sbjct: 102 LHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ 158
Query: 410 NI 411
+
Sbjct: 159 AL 160
Score = 45.4 bits (108), Expect = 3e-05
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N ++ L F ++L EL+L N+I + N NL L+L+ L
Sbjct: 78 LNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLS 134
Query: 410 NIKLN 414
+ KL
Sbjct: 135 STKLG 139
Score = 44.6 bits (106), Expect = 5e-05
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
+ L N+ L F+ SL+ L L+ + + + L NL L+L++ N+
Sbjct: 435 IYLSYNKYLQLT--RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492
Query: 409 RNI 411
NI
Sbjct: 493 ANI 495
Score = 43.8 bits (104), Expect = 9e-05
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQEN 381
++ L LK L++ + L L SN + +F L+ + L N
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSH--LHILNLESNGFDEIP--VEVFKDLFELKIIDLGLN 570
Query: 382 NIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
N+ + + +LK LNL + ++
Sbjct: 571 NLNTL-PASVFNNQVSLKSLNLQKNLITSV 599
Score = 43.8 bits (104), Expect = 9e-05
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
L L N I + + ++ E+YL N + N+ +P+L+ L L
Sbjct: 408 EVLDLGLNEIGQELT-GQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVA 465
Query: 408 LRNI 411
L+N+
Sbjct: 466 LKNV 469
Score = 42.7 bits (101), Expect = 2e-04
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 325 HIHTLTLGN---MGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMF-----SSLEEL 376
+ L L N + + LAN + L L +++++T F ++L L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGLKWTNLTML 253
Query: 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L NN+ G ++ LP L+Y L N++++
Sbjct: 254 DLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNIQHL 287
Score = 41.5 bits (98), Expect = 4e-04
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI-------VDWGEVNALGSLPNLKYLN 402
L L +N I ++ M LE L LQ NN+ G + L L +L LN
Sbjct: 485 LDLSNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 403 LASTNLRNI 411
L S I
Sbjct: 543 LESNGFDEI 551
Score = 41.1 bits (97), Expect = 6e-04
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 341 ILKLLANFPVTCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLK 399
L L +F T + + +D LE L +++N+I + N L NLK
Sbjct: 300 YLNLKRSF--TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLK 356
Query: 400 YLNLASTNLRNIK 412
YL+L S + +++
Sbjct: 357 YLSL-SNSFTSLR 368
Score = 40.8 bits (96), Expect = 7e-04
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 353 LKLPSNRITTLDSVPGMF-----SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
L L +N+I L SSL++L L N I ++ ++ L L L +
Sbjct: 150 LLLSNNKIQALK--SEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQ 206
Query: 408 LRNI 411
L
Sbjct: 207 LGPS 210
Score = 40.0 bits (94), Expect = 0.001
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L VP + +++ L L N + L L++ + +
Sbjct: 16 LTQVPDDLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKL 64
Score = 37.3 bits (87), Expect = 0.010
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVN--------ALGSLPNLKYL 401
L N I L ++ L L+ + + + L L++L
Sbjct: 277 FFLEYNNIQHLF--SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334
Query: 402 NLASTNLRNI 411
N+ ++ I
Sbjct: 335 NMEDNDIPGI 344
Score = 28.8 bits (65), Expect = 3.6
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 353 LKLPSNRITTLD--SVPGMFSSLEELYLQENNI 383
L L N IT+++ F +L EL ++ N
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 50.0 bits (120), Expect = 5e-07
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 342 LKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401
L + + ++ L L +N + DS+ + +LE L ++ N + + LG L L+ L
Sbjct: 100 LNGIPSACLSRLFLDNNELRDTDSLIHL-KNLEILSIRNNKLKS---IVMLGFLSKLEVL 155
Query: 402 NLASTNLRNIK 412
+L + N
Sbjct: 156 DLHGNEITNTG 166
Score = 49.6 bits (119), Expect = 5e-07
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L + NR+ L+ +P L L+L N + D ++L L NL+ L++ + L++
Sbjct: 88 EELSVNRNRLKNLNGIPSA--CLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKS 142
Query: 411 IK 412
I
Sbjct: 143 IV 144
Score = 48.5 bits (116), Expect = 1e-06
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
V ++ I +L + F++L+EL+L N I D ++ L L L+ L++
Sbjct: 37 QKELSGVQNFNGDNSNIQSLAGM-QFFTNLKELHLSHNQISD---LSPLKDLTKLEELSV 92
Query: 404 ASTNLRNIK 412
L+N+
Sbjct: 93 NRNRLKNLN 101
Score = 46.9 bits (112), Expect = 5e-06
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L + +N++ ++ + + S LE L L N I + L L + +++L N
Sbjct: 131 EILSIRNNKLKSIVMLGFL-SKLEVLDLHGNEITN---TGGLTRLKKVNWIDLTGQKCVN 186
Query: 411 IKLN 414
+
Sbjct: 187 EPVK 190
Score = 41.2 bits (97), Expect = 3e-04
Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 355 LPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
I + PG ++ + L + ++ D + + L ++ N ++N++++
Sbjct: 4 QRPTPINQVFPDPG-LANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQSLA 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 50.0 bits (120), Expect = 7e-07
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L N I + + L L LQ NN+ + L + P L ++L+ L I
Sbjct: 210 LDASHNSINVVR--GPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKI 263
Score = 45.4 bits (108), Expect = 2e-05
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + N I L P +F L L L+ N++ + P L L++++ NL
Sbjct: 98 LYMGFNAIRYLP--PHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLE 154
Query: 410 NI 411
I
Sbjct: 155 RI 156
Score = 45.0 bits (107), Expect = 3e-05
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T LKL N +T + L E+ L N + + + L+ L +++ L
Sbjct: 229 TILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVA 286
Query: 411 I 411
+
Sbjct: 287 L 287
Score = 44.6 bits (106), Expect = 4e-05
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N +++L G+F L L + NN+ + + + +L+ L L+S L
Sbjct: 122 LVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLT 178
Query: 410 NIKLN 414
++ L+
Sbjct: 179 HVDLS 183
Score = 44.3 bits (105), Expect = 4e-05
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L + +NR+ L+ +L+ L L N+++ L+ L L ++ +K
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVTLK 334
Query: 413 LN 414
L+
Sbjct: 335 LS 336
Score = 44.3 bits (105), Expect = 5e-05
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ ++ + L ++ F +E L L + I + + A ++ L + +R +
Sbjct: 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYL 108
Score = 43.9 bits (104), Expect = 7e-05
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L+L SNR+T +D + SL + N + + L ++ L+ + ++ +
Sbjct: 170 LQLSSNRLTHVD--LSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVV 220
Score = 42.0 bits (99), Expect = 3e-04
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L N + ++ F LE LYL N+IV L + LK L L+ +
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWDCNS 355
Query: 413 L 413
L
Sbjct: 356 L 356
Score = 35.0 bits (81), Expect = 0.040
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
++ + + + + + L S ++ LNL + I
Sbjct: 44 LNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEID 85
Score = 31.9 bits (73), Expect = 0.40
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N I TL +L+ L L N+ W + N+ + +
Sbjct: 323 LYLDHNSIVTLK--LSTHHTLKNLTLSHND---WDCNSLRALFRNVARPAVDDADQ 373
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 50.1 bits (120), Expect = 7e-07
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N + T+ S LE L Q +N+ E + SL NL YL+++ T+ R
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 411 I 411
Sbjct: 436 A 436
Score = 46.2 bits (110), Expect = 1e-05
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
L + +L+ +L+EL + N I + +L NL++L+L+S
Sbjct: 103 QKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 408 LRNI 411
+++I
Sbjct: 161 IQSI 164
Score = 45.9 bits (109), Expect = 2e-05
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + G+F SSLE L + N+ + + L NL +L+L+ L
Sbjct: 426 LDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 410 NI 411
+
Sbjct: 484 QL 485
Score = 45.9 bits (109), Expect = 2e-05
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N I +L G F SSL++L E N+ E +G L LK LN+A ++
Sbjct: 81 LILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQ 137
Query: 410 NIKLNK 415
+ KL +
Sbjct: 138 SFKLPE 143
Score = 44.7 bits (106), Expect = 4e-05
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 350 VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N + L F L+ L L I E A SL +L L L +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI 88
Query: 409 RNI 411
+++
Sbjct: 89 QSL 91
Score = 43.2 bits (102), Expect = 1e-04
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 353 LKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
LK+ N L + +L L L + + A SL +L+ LN+AS L++
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKS 508
Query: 411 I 411
+
Sbjct: 509 V 509
Score = 40.9 bits (96), Expect = 7e-04
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 327 HTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW 386
L L N + LKL + + L SN+ S + SLE L L N +
Sbjct: 307 QHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFK 362
Query: 387 GEV-NALGSLPNLKYLNLASTNLRNI 411
G + +LKYL+L+ + +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITM 388
Score = 39.7 bits (93), Expect = 0.002
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L L ++ L P F SSL+ L + N + L +L+ + L
Sbjct: 475 LDLSQCQLEQLS--PTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWL 525
Score = 39.3 bits (92), Expect = 0.002
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L+L + + ++ SL+ L N G + LP+L++L+L+ L
Sbjct: 307 QHLELVNCKFGQFPTLK--LKSLKRLTFTSNKG---GNAFSEVDLPSLEFLDLSRNGLSF 361
Query: 411 IKL 413
Sbjct: 362 KGC 364
Score = 38.5 bits (90), Expect = 0.004
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+P + S + L L N + G + S P L+ L+L+ ++ I
Sbjct: 19 FYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTI 67
Score = 37.4 bits (87), Expect = 0.008
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 353 LKLPSNRITTLDSVPGMFS--SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N + + PG F L +L L+ N + L L+ L RN
Sbjct: 182 LDLSLNPMNFIQ--PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Score = 29.7 bits (67), Expect = 2.3
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL 53
+++L+++ NL+ S F + E L +L HL+L
Sbjct: 124 KTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDL 156
Score = 29.3 bits (66), Expect = 3.1
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI 383
L + SN++ ++ G+F +SL++++L N
Sbjct: 499 LNMASNQLKSVP--DGIFDRLTSLQKIWLHTNPW 530
Score = 28.5 bits (64), Expect = 4.3
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 325 HIHTLTLG------NMGYIWADILKLLANFPVTCLKLPSNRI--TTLDSVPGMFSSLEEL 376
+H L LG N+ L+ L N + +L + + +++
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
L I + + +L+ +N +KL
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 49.7 bits (119), Expect = 9e-07
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKY 400
+ L L +NRIT + +L+ L L N I E ++ SL +L++
Sbjct: 48 SGLTEAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEH 104
Query: 401 LNLASTNLRNI 411
L+L+ L N+
Sbjct: 105 LDLSYNYLSNL 115
Score = 42.8 bits (101), Expect = 1e-04
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N ++ L F SSL L L N GE + L L+ L +
Sbjct: 105 LDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV----GN 158
Query: 410 NIKL 413
Sbjct: 159 MDTF 162
Score = 39.7 bits (93), Expect = 0.001
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 351 TCLKLPSN-RITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
L++ + T + F + LEEL + +++ + E +L S+ N+ +L L
Sbjct: 152 QILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMK 208
Query: 407 NLRNI 411
+
Sbjct: 209 QHILL 213
Score = 39.3 bits (92), Expect = 0.002
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 353 LKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L++ ++ + + + P S + L L + E + +++ L L T+L
Sbjct: 179 LEIDASDLQSYE--PKSLKSIQNVSHLILHMKQHILLLE-IFVDVTSSVECLELRDTDLD 235
Query: 410 NIKLNK 415
++
Sbjct: 236 TFHFSE 241
Score = 35.9 bits (83), Expect = 0.022
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIV 384
+ T + + L F +K+ + + + S L EL N +
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTF--RNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290
Query: 385 DWGEVNALGSLPNLKYLNLASTNLR 409
+ L +L+ + L +
Sbjct: 291 SVPD-GIFDRLTSLQKIWLHTNPWD 314
Score = 32.0 bits (73), Expect = 0.31
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 350 VTCLKLPSNRITTLDSV---PGMFSS------LEELYLQENNIVDWGEVNALGSLPNLKY 400
V CL+L + T G +S + + + ++ + L + L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLE 281
Query: 401 LNLASTNLRNI 411
L + L+++
Sbjct: 282 LEFSRNQLKSV 292
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 49.2 bits (118), Expect = 2e-06
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
L L +N+ L S SL L ++ N L +L NL+ L+L+ +
Sbjct: 304 KKLVLSANKFENLC--QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361
Query: 408 LRNIKLNKE 416
+
Sbjct: 362 IETSDCCNL 370
Score = 47.7 bits (114), Expect = 4e-06
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N +L F LE L L + + +L LK LNL+ + L
Sbjct: 381 LNLSYNEPLSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 410 NI 411
Sbjct: 439 IS 440
Score = 47.3 bits (113), Expect = 6e-06
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L +N + + +L+ L+ + I + L + L+ L L S ++
Sbjct: 86 LVLTANPLIFMA--ETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHIS 142
Query: 410 NIKLN 414
+IKL
Sbjct: 143 SIKLP 147
Score = 46.5 bits (111), Expect = 1e-05
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
L L + + +F +L+ L LQ N+ + + N+L +L L+ L L+ +
Sbjct: 430 LNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487
Query: 408 LRNI 411
L +I
Sbjct: 488 LSSI 491
Score = 45.8 bits (109), Expect = 2e-05
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 311 NDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVT---CLKLPSNRITTLDSVP 367
ND +G+ F +L G I K L N + + P
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGT-QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS--P 245
Query: 368 GMFS-----SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+F S+E + LQ++ + N L+ L+L +T+L +
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHLSEL 293
Score = 45.4 bits (108), Expect = 3e-05
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
CL+ N + T+ FS +L L L I + S L L L +
Sbjct: 35 TECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTAN 91
Query: 407 NLRNI 411
L +
Sbjct: 92 PLIFM 96
Score = 45.0 bits (107), Expect = 3e-05
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L I+++D +LE LYL N+I ++ LK L+ + +
Sbjct: 110 LFFIQTGISSID--FIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH 166
Query: 410 NIK 412
+
Sbjct: 167 YLS 169
Score = 45.0 bits (107), Expect = 4e-05
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 353 LKLPSNRITTLDSV-PGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N + LE L L ++ + +A SL + +++L+ L
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRL 512
Query: 409 RNI 411
+
Sbjct: 513 TSS 515
Score = 41.2 bits (97), Expect = 6e-04
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVN-ALGSLPNLKYLNLASTNL 408
L + N + G +L EL L ++I N L +L +L+ LNL+
Sbjct: 330 LSIKGNTKRL-ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388
Query: 409 RNI 411
++
Sbjct: 389 LSL 391
Score = 40.4 bits (95), Expect = 0.001
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L+ +P + +S E L N + L NL +L+L + I
Sbjct: 24 LNEIPGTLPNSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWI 72
Score = 39.6 bits (93), Expect = 0.002
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 325 HIHTLTLGN--MGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENN 382
+ L N + Y+ + + L L L N I ++ + + L
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 383 I-VDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ + ++ +L + +I
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Score = 37.7 bits (88), Expect = 0.007
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 353 LKLPSNRITTLDSVPGMFSSLE--ELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
+ L NR+T+ S L+ L L N+I + L L + +NL L
Sbjct: 505 VDLSHNRLTSSS--IEALSHLKGIYLNLASNHISIILP-SLLPILSQQRTINLRQNPL 559
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 48.7 bits (116), Expect = 2e-06
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 346 ANFP--VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKY 400
++ P L+ ++ + G FS LE++ + +N++++ E + +LP L
Sbjct: 26 SDLPRNAIELRFVLTKLRVIQ--KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83
Query: 401 LNLASTN-LRNI 411
+ + N L I
Sbjct: 84 IRIEKANNLLYI 95
Score = 39.8 bits (93), Expect = 0.001
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 353 LKLPSNRITTLDSVPGMFS--SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N I + F+ L+EL L +NN ++ + L+++ T + +
Sbjct: 159 LWLNKNGIQEIH--NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216
Query: 411 I 411
+
Sbjct: 217 L 217
Score = 38.7 bits (90), Expect = 0.002
Identities = 14/62 (22%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
+++ N + + +FS L E+ +++ N + + A +LPNL+YL +++T ++
Sbjct: 59 IEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117
Query: 410 NI 411
++
Sbjct: 118 HL 119
Score = 35.2 bits (81), Expect = 0.029
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 12/90 (13%)
Query: 327 HTLTLGNMG--YIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSL---EELYLQEN 381
L L G I +N + L +F L +
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQL--DELNLSDNNNLEELP--NDVFHGASGPVILDISRT 212
Query: 382 NIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
I L +L L+ + NL+ +
Sbjct: 213 RIHSL-PSYGLENLKKLRARST--YNLKKL 239
Score = 33.3 bits (76), Expect = 0.14
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 339 ADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398
D+ + L + RI +L +L++L + + ++ L L L
Sbjct: 195 NDVFHGASGP--VILDISRTRIHSLP--SYGLENLKKLRARSTY--NLKKLPTLEKLVAL 248
Query: 399 KYLNL 403
+L
Sbjct: 249 MEASL 253
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 49.1 bits (117), Expect = 2e-06
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L +N I+ + + +YL N I + G ++YL+L + +
Sbjct: 104 LHAANNNISRVS--CSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTV 159
Score = 46.8 bits (111), Expect = 9e-06
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ L +N+IT L D G S ++ L L+ N I S L++LNL + ++
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Score = 45.6 bits (108), Expect = 2e-05
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 351 TCLKLPSNRITTLD--SVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N I T++ + +LE L LQ N I +V LK L+L+S L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL 203
Query: 409 RNI 411
+
Sbjct: 204 AFM 206
Score = 44.8 bits (106), Expect = 3e-05
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 340 DILKLLANFPVTCLKLPSNRITTLD-SVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398
+I + K+ + + S+ +++EL L N + L L
Sbjct: 4 EIKQNGNR--YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKL 60
Query: 399 KYLNLASTNLRNI 411
+ LNL+S L
Sbjct: 61 ELLNLSSNVLYET 73
Score = 44.1 bits (104), Expect = 6e-05
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 339 ADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSL 395
A + + N V L L N ++ + + LE L L N + E L SL
Sbjct: 27 ASLRQSAWN--VKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNVLY---ETLDLESL 79
Query: 396 PNLKYLNLASTNLRNI 411
L+ L+L + ++ +
Sbjct: 80 STLRTLDLNNNYVQEL 95
Score = 43.7 bits (103), Expect = 7e-05
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L SN + + + S+L L L N + L P+++ L+ A+ N+ +
Sbjct: 63 LNLSSNVLYETLDLESL-STLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVS 115
Query: 413 LN 414
+
Sbjct: 116 CS 117
Score = 43.3 bits (102), Expect = 1e-04
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L SN++ + + + + L+ N +V AL NL++ +L
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGT 253
Query: 413 L 413
L
Sbjct: 254 L 254
Score = 37.1 bits (86), Expect = 0.011
Identities = 11/90 (12%), Positives = 19/90 (21%), Gaps = 1/90 (1%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIV 384
H ++ +AD L L L + L+ + E+ +
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349
Query: 385 DWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
L L N
Sbjct: 350 T-VIDQVTLRKQAKITLEQKKKALDEQVSN 378
Score = 34.8 bits (80), Expect = 0.046
Identities = 6/55 (10%), Positives = 19/55 (34%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
+ L +N++ ++ +LE L+ N + ++ + +
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 49.2 bits (117), Expect = 2e-06
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L N I + + L L LQ NN+ + L + P L ++L+ L I
Sbjct: 216 LDASHNSINVVR--GPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKI 269
Score = 44.5 bits (105), Expect = 4e-05
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
LKL N +T + L E+ L N + + + L+ L +++ L +
Sbjct: 237 LKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVAL 293
Score = 44.1 bits (104), Expect = 6e-05
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + N I L P +F L L L+ N++ + P L L++++ NL
Sbjct: 104 LYMGFNAIRYLP--PHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLE 160
Query: 410 NI 411
I
Sbjct: 161 RI 162
Score = 44.1 bits (104), Expect = 6e-05
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L + +NR+ L+ +L+ L L N+++ L+ L L ++ +K
Sbjct: 283 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVTLK 340
Query: 413 LN 414
L+
Sbjct: 341 LS 342
Score = 43.8 bits (103), Expect = 8e-05
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N +++L G+F L L + NN+ + + + +L+ L L+S L
Sbjct: 128 LVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLT 184
Query: 410 NIKLN 414
++ L+
Sbjct: 185 HVDLS 189
Score = 43.0 bits (101), Expect = 1e-04
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L+L SNR+T +D + SL + N + + L ++ L+ + ++ +
Sbjct: 176 LQLSSNRLTHVD--LSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVV 226
Score = 43.0 bits (101), Expect = 1e-04
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ ++ + L ++ F +E L L + I + + A ++ L + +R +
Sbjct: 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYL 114
Score = 41.5 bits (97), Expect = 4e-04
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L N + ++ F LE LYL N+IV L + LK L L+ +
Sbjct: 306 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWDCNS 361
Query: 413 L 413
L
Sbjct: 362 L 362
Score = 34.5 bits (79), Expect = 0.062
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
++ + + + + + L S ++ LNL + I
Sbjct: 50 LNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEID 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 49.0 bits (117), Expect = 2e-06
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
L L N I T+ F L+ L L + A +LPNL+ L+L S+
Sbjct: 26 TERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83
Query: 407 NLRNI 411
+ +
Sbjct: 84 KIYFL 88
Score = 47.5 bits (113), Expect = 6e-06
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
L L S++I L P F L EL L + D + +L L L+L+ +
Sbjct: 78 LDLGSSKIYFLH--PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135
Query: 409 RNIKLNK 415
R++ L+
Sbjct: 136 RSLYLHP 142
Score = 46.0 bits (109), Expect = 2e-05
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 329 LTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVD 385
L+ G + + + + + L + + L L N+I + F +L+ L L N + +
Sbjct: 273 LSHGFVFSLNSRVFETLKD--LKVLNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLLGE 328
Query: 386 WGEVNALGSLPNLKYLNLASTNLRNI 411
+ LP + Y++L ++ I
Sbjct: 329 -LYSSNFYGLPKVAYIDLQKNHIAII 353
Score = 45.6 bits (108), Expect = 3e-05
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 340 DILKLLANFP-VTCLKLPSNRITTL--DSVPGMFSSLEELYLQENNIVDWGEV----NAL 392
DIL L P + L L NR ++ D P SLE+L+L EN + E +
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476
Query: 393 GSLPNLKYLNLASTNLRNI 411
L +L+ L L L ++
Sbjct: 477 EGLSHLQVLYLNHNYLNSL 495
Score = 45.2 bits (107), Expect = 3e-05
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L+L ++ G F +L L L +N I + G L +LK ++ +S +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 410 NI 411
+
Sbjct: 162 LV 163
Score = 42.1 bits (99), Expect = 3e-04
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMF-----SSLEELYLQENNIVDWGEVNALGS 394
L+ + + I D F SS+ L L + +
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPD--QNTFAGLARSSVRHLDLSHGFVFSLNS-RVFET 288
Query: 395 LPNLKYLNLASTNLRNI 411
L +LK LNLA + I
Sbjct: 289 LKDLKVLNLAYNKINKI 305
Score = 41.3 bits (97), Expect = 5e-04
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 353 LKLPSNRITTLDSV---PGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
L L N + +F S L+ LYL N + L L+ L+L S
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP-GVFSHLTALRGLSLNSN 514
Query: 407 NLRNI 411
L +
Sbjct: 515 RLTVL 519
Score = 40.9 bits (96), Expect = 6e-04
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGM--FSSLE 374
+ I I + L + + L AN + L NR+ LD + + L+
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTLPKINLTANL----IHLSENRLENLDILYFLLRVPHLQ 429
Query: 375 ELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L L +N P+L+ L L L+
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466
Score = 39.0 bits (91), Expect = 0.003
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 358 NRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKE 416
R L VP + ++ E L L N I ++ L L+ L L + + ++KE
Sbjct: 11 YRFCNLTQVPQVLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLEL-GSQYTPLTIDKE 67
Score = 39.0 bits (91), Expect = 0.003
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L+L S L F +L L L + I + +A L +L L L L
Sbjct: 53 LELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLS 110
Query: 410 NIKLNKE 416
+ L
Sbjct: 111 DAVLKDG 117
Score = 38.6 bits (90), Expect = 0.004
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 329 LTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVD 385
L L + D+ + L++ + L L N + +L PG+F ++L L L N +
Sbjct: 463 LQLAWETELCWDVFEGLSH--LQVLYLNHNYLNSLP--PGVFSHLTALRGLSLNSNRLTV 518
Query: 386 WGEVNALGSLPNLKYLNLASTNLRNI 411
++ NL+ L+++ L
Sbjct: 519 ---LSHNDLPANLEILDISRNQLLAP 541
Score = 38.2 bits (89), Expect = 0.004
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 353 LKLPSNRITTLDS-VPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ L N I + L+ L L++N + + +P++ + L+ L +
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVTL 396
Query: 412 K 412
Sbjct: 397 P 397
Score = 32.9 bits (75), Expect = 0.25
Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 20/110 (18%)
Query: 325 HIHTLTLGN--MGYIWADILKLLANFPVTCLKLPSNRITTLDSV-------PGMFSSLEE 375
+ ++ + + + L+ L ++ L +N + + SV P LE
Sbjct: 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208
Query: 376 LYLQENNI-----------VDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
L + N + + +L ++ N+++ N
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Score = 31.7 bits (72), Expect = 0.57
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 353 LKLPSNRITTLDSVPGMFS-----SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
+ SN+I + +L L N++ V+ + + + L +
Sbjct: 153 IDFSSNQIFLVC--EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 408 LRNIKLNKE 416
+ +
Sbjct: 211 VSGNGWTVD 219
Score = 29.8 bits (67), Expect = 2.3
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 18/122 (14%)
Query: 23 EDLDLSRNLLASWFAVGEITCQLKHLRHLNL---RIRLKSSSAPAHSYLAEVVFFVHLG- 78
+L L L+ LK L L+L +I S H ++ +
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI----RSLYLHPSFGKLNSLKSIDF 155
Query: 79 -----RTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN 133
+C+ + L LS N + + V + R L++L+
Sbjct: 156 SSNQIFLVCEHEL----EPLQ-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 134 GS 135
S
Sbjct: 211 VS 212
Score = 28.6 bits (64), Expect = 4.9
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 24/109 (22%)
Query: 12 HDEIEQAVPFIEDLDLSRNLL----ASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHS 66
E + +P + LDL + + F L HL L L L +
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAF------QGLFHLFELRLYFCGLSDAVLKDG- 117
Query: 67 YLAEVVFFVHLG--RTL----CDEDFVKEGSLLHYLPKLSSLRFTKNPI 109
+F +L L + L L S+ F+ N I
Sbjct: 118 ------YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Score = 28.2 bits (63), Expect = 6.8
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVF-FVHL 77
+ LDLS+N + S + +L L+ ++ ++ L F L
Sbjct: 123 KALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 78 GR----TLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN 133
+ D+ K + + L L + N + S + ++ L L +
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 47.7 bits (114), Expect = 2e-06
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 353 LKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L + +L++ P G +L+EL + N I + +L NL++L+L+S +++I
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 44.6 bits (106), Expect = 2e-05
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 346 ANFPVTC--LKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
N P + L L N + L F S L+ L L I E A SL +L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLST 80
Query: 401 LNLASTNLRNI 411
L L ++++
Sbjct: 81 LILTGNPIQSL 91
Score = 44.6 bits (106), Expect = 3e-05
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
+ L L N I +L G F SSL++L E N+ E +G L LK LN+A
Sbjct: 79 STLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNL 135
Query: 408 LRNIKLN 414
+++ KL
Sbjct: 136 IQSFKLP 142
Score = 41.1 bits (97), Expect = 3e-04
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+P + S + L L N + + S P L+ L+L+ ++ I
Sbjct: 19 FYKIPDNLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTI 67
Score = 37.3 bits (87), Expect = 0.006
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 30/88 (34%)
Query: 353 LKLPSNRITTLDSVPGMFSS---LEELYLQENNIVD-------------------WGEVN 390
L + N I + P FS+ LE L L N I +N
Sbjct: 129 LNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 391 ALGSLP-------NLKYLNLASTNLRNI 411
+ + LK L L + L+++
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSV 215
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 47.7 bits (114), Expect = 2e-06
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L + L PG+F +L+ LYLQ+N + + L NL +L L +
Sbjct: 110 LHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRIS 166
Query: 410 NI 411
++
Sbjct: 167 SV 168
Score = 46.1 bits (110), Expect = 1e-05
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L NRI+++ F SL+ L L +N + +A L L L L + NL
Sbjct: 158 LFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLS 214
Query: 410 NI 411
+
Sbjct: 215 AL 216
Score = 45.4 bits (108), Expect = 2e-05
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKY 400
P + L NRI+ + F +L L+L N + + A L L+
Sbjct: 28 VGIPAASQRIFLHGNRISHVP--AASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQ 84
Query: 401 LNLASTNLR 409
L+L S N +
Sbjct: 85 LDL-SDNAQ 92
Score = 45.0 bits (107), Expect = 2e-05
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L +VP G+ ++ + ++L N I + + NL L L S L I
Sbjct: 23 LQAVPVGIPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARI 71
Score = 42.3 bits (100), Expect = 1e-04
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 353 LKLPSN-RITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N ++ ++D P F L L+L + + G L L+YL L L
Sbjct: 85 LDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNAL 141
Query: 409 RNI 411
+ +
Sbjct: 142 QAL 144
Score = 41.1 bits (97), Expect = 4e-04
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNI--VDWGEVNALGSLPNLKYLNLAS 405
L L NR+ + P F L LYL NN+ + AL L L+YL L
Sbjct: 182 LLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLND 234
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 48.2 bits (115), Expect = 3e-06
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N + ++ + +L L + N ++ +++LNL+ST +R
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSSTGIR 423
Query: 410 NI 411
+
Sbjct: 424 VV 425
Score = 46.3 bits (110), Expect = 1e-05
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N +++L F SSL+ L L N G + +L NL+ L + +
Sbjct: 79 LDLSDNHLSSLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Score = 45.1 bits (107), Expect = 3e-05
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 324 GHIHTLTLGNMG----YIWADILKLLANFP-VTCLKLPSNRITTLDSVPGMFS---SLEE 375
G + T+T+ + Y++ D+ + + V + + ++++ + SLE
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP--CSFSQHLKSLEF 338
Query: 376 LYLQENNIVDWGEVN--ALGSLPNLKYLNLASTNLRNI 411
L L EN +V+ N G+ P+L+ L L+ +LR++
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Score = 44.7 bits (106), Expect = 4e-05
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L S+RI T++ F SLE L L +N++ + G L +LKYLNL +
Sbjct: 55 LILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQ 111
Query: 410 NIKLNKE 416
+ +
Sbjct: 112 TLGVTSL 118
Score = 42.8 bits (101), Expect = 2e-04
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
+ L L N+IT + G + L+ L L+ + I E +A SL +L++L+L+
Sbjct: 28 MKSLDLSFNKITYIG--HGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDN 84
Query: 407 NLRNI 411
+L ++
Sbjct: 85 HLSSL 89
Score = 41.6 bits (98), Expect = 4e-04
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N TL V +F +L+ L + L +L L + + +LR
Sbjct: 103 LNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161
Query: 410 NIK 412
N +
Sbjct: 162 NYQ 164
Score = 41.6 bits (98), Expect = 4e-04
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
+ L + +N + S L+ELY+ N + + P L + ++ L+
Sbjct: 433 LEVLDVSNNNLD---SFSLFLPRLQELYISRNKLKT---LPDASLFPVLLVMKISRNQLK 486
Query: 410 NI 411
++
Sbjct: 487 SV 488
Score = 41.2 bits (97), Expect = 5e-04
Identities = 11/102 (10%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFP------VTCLKLPSNRITTLDSVPGMFS---SLEE 375
TL +G +++ + L +P + ++S ++
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL--STVYSLLEKVKR 314
Query: 376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEG 417
+ ++ + + + L +L++L+L+ + L
Sbjct: 315 ITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355
Score = 40.9 bits (96), Expect = 7e-04
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
S+P G+ ++++ L L N I G L + NL+ L L S+ + I
Sbjct: 17 FTSIPSGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTI 65
Score = 39.7 bits (93), Expect = 0.001
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L + N++ TL +F L + + N + L +L+ + L
Sbjct: 456 LYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSV-PDGIFDRLTSLQKIWL 504
Score = 38.2 bits (89), Expect = 0.004
Identities = 9/57 (15%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 358 NRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ + F+ SL EL ++ ++ ++ + +L S+ ++ +L L + +
Sbjct: 134 ETFSEIR--RIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSESAFL 187
Score = 37.4 bits (87), Expect = 0.009
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L + N + + L L I V L+ L++++ NL +
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI----RVVKTCIPQTLEVLDVSNNNLDS 445
Query: 411 IKLN 414
L
Sbjct: 446 FSLF 449
Score = 35.5 bits (82), Expect = 0.032
Identities = 11/115 (9%), Positives = 40/115 (34%), Gaps = 7/115 (6%)
Query: 303 NTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKL----LANFPVTCLK-LPS 357
+ LP+ +S + + F + + + + IL+L + + L
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271
Query: 358 NRITTLDSVPGM-FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ + + + ++ L++ + + L +K + + ++ + +
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVFLV 325
Score = 35.5 bits (82), Expect = 0.035
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L++ + + + L L + + L +++YL L TNL
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARF 211
Query: 412 KLN 414
+ +
Sbjct: 212 QFS 214
Score = 28.5 bits (64), Expect = 4.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL 53
P ++ L LS+N L S GEI LK+L L++
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 48.2 bits (115), Expect = 3e-06
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
L L NRI TL+ F+ LEEL L EN + E A +L NL+ L L S
Sbjct: 34 TRLLDLGKNRIKTLN--QDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSN 90
Query: 407 NLRNI 411
L+ I
Sbjct: 91 RLKLI 95
Score = 47.8 bits (114), Expect = 4e-06
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L++ N + + FS SLE+L L++ N+ AL L L L L N+
Sbjct: 133 LEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNIN 189
Query: 410 NIK 412
I+
Sbjct: 190 AIR 192
Score = 47.0 bits (112), Expect = 7e-06
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 311 NDTSGVMEQIFPQGHIHTLTLGNMG--YIWADILKLLANFPVTCLKLPSNRITTLDSVPG 368
+ ++ +L++ + + ++ L + L L N I+T++
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY--LRFLNLSYNPISTIE--GS 266
Query: 369 MFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
M L+E+ L + E A L L+ LN++ L +
Sbjct: 267 MLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTL 311
Score = 46.6 bits (111), Expect = 1e-05
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L + N+I L MF +L+ L + +N++V A L +L+ L L NL
Sbjct: 109 LDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLT 165
Query: 410 NI 411
+I
Sbjct: 166 SI 167
Score = 46.2 bits (110), Expect = 1e-05
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 327 HTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI 383
L + + Y+ L +T L + +T + L L L N I
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP--YLAVRHLVYLRFLNLSYNPI 260
Query: 384 VDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ L L L+ + L L +
Sbjct: 261 STIEG-SMLHELLRLQEIQLVGGQLAVV 287
Score = 45.9 bits (109), Expect = 2e-05
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L+L I + F L+ L + +D N L L NL L++ NL
Sbjct: 181 LRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLT 237
Query: 410 NI 411
+
Sbjct: 238 AV 239
Score = 42.8 bits (101), Expect = 1e-04
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L+L N ++ ++ PG F+ +L L L+ N + + L NL L+++ +
Sbjct: 61 LELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIV 117
Query: 410 NI 411
+
Sbjct: 118 IL 119
Score = 41.2 bits (97), Expect = 5e-04
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+VP G+ + L L +N I + + S P+L+ L L + +
Sbjct: 23 FVAVPEGIPTETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAV 71
Score = 40.9 bits (96), Expect = 6e-04
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 325 HIHTLTLGN--MGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQ 379
++ L L + I +L L + ++L ++ ++ P F L L +
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLR--LQEIQLVGGQLAVVE--PYAFRGLNYLRVLNVS 304
Query: 380 ENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
N + E + S+ NL+ L L S L
Sbjct: 305 GNQLTTL-EESVFHSVGNLETLILDSNPLA 333
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 47.6 bits (113), Expect = 5e-06
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N++ L + M SL++L + +N++ + +L LN++S L
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Score = 45.6 bits (108), Expect = 2e-05
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L N++ + +L+ L L N G++ LK+L L++T+L
Sbjct: 74 LDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
Query: 413 LNK 415
+
Sbjct: 132 VLP 134
Score = 40.2 bits (94), Expect = 0.001
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
T L + N I+ L S L L + N I +++ L+YL+L+
Sbjct: 23 TTILNISQNYISELW--TSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHN 79
Query: 407 NLRNI 411
L I
Sbjct: 80 KLVKI 84
Score = 39.8 bits (93), Expect = 0.001
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNAL--GSLPNLKYLNLAS 405
L + NRI LD +F LE L L N + + NLK+L+L+
Sbjct: 48 RILIISHNRIQYLD--ISVFKFNQELEYLDLSHNKL------VKISCHPTVNLKHLDLSF 99
Query: 406 TNLRNIKLNKE 416
+ + KE
Sbjct: 100 NAFDALPICKE 110
Score = 38.3 bits (89), Expect = 0.004
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 326 IHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDS-VPGMFSSLEELYLQENNIV 384
IH + G+ + I ++ +N + + + P S L N +
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNI--KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337
Query: 385 DWGEVNALGSLPNLKYLNLASTNLRNI 411
D G L L+ L L L+ +
Sbjct: 338 D-TVFENCGHLTELETLILQMNQLKEL 363
Score = 37.5 bits (87), Expect = 0.007
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 353 LKLPSNRITTLDSVPGMF-SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTNLR 409
L + SN +T D++ ++ L L N I + + L L+ LN+AS L+
Sbjct: 404 LNMSSNILT--DTIFRCLPPRIKVLDLHSNKIKSIPKQ----VVKLEALQELNVASNQLK 457
Query: 410 NI 411
++
Sbjct: 458 SV 459
Score = 35.2 bits (81), Expect = 0.034
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 350 VTCLKLPSNRITTLDSVPGMF--SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNL 403
+ L L SN+I ++ + +L+EL + N + V G L +L+ + L
Sbjct: 423 IKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQKIWL 475
Score = 35.2 bits (81), Expect = 0.036
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEV-NALGSLPNLKYLNLAST 406
L +N +T V LE L LQ N + + ++ + +L+ L+++
Sbjct: 327 LHLDFSNNLLTDT--VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
Query: 407 NLRNI 411
++
Sbjct: 385 SVSYD 389
Score = 31.0 bits (70), Expect = 0.85
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLP-NLKYLNLAST 406
L + N ++ + G S SL L + N + D LP +K L+L S
Sbjct: 377 QQLDISQNSVSYDEK-KGDCSWTKSLLSLNMSSNILTD----TIFRCLPPRIKVLDLHSN 431
Query: 407 NLRNI 411
+++I
Sbjct: 432 KIKSI 436
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 46.5 bits (110), Expect = 7e-06
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 339 ADILKLLA-NFP-VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALG 393
A L+++ N P + L L +NR+ LD + + +L+ L L N + E++ +
Sbjct: 159 AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 218
Query: 394 SLPNLKYLNL 403
L L+ L L
Sbjct: 219 GLK-LEELWL 227
Score = 41.1 bits (96), Expect = 3e-04
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL-PNLKYLNLASTNLR 409
L S TL + L L L N + +++++ PNLK LNL+ L+
Sbjct: 150 VVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209
Query: 410 NIK 412
+ +
Sbjct: 210 SER 212
Score = 33.0 bits (75), Expect = 0.13
Identities = 32/140 (22%), Positives = 47/140 (33%), Gaps = 30/140 (21%)
Query: 3 SRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRI-RLKSSS 61
+R S T IE+ +P + L+LS N L + I + +L+ LNL LKS
Sbjct: 153 NRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-- 210
Query: 62 APAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSS-RE 120
E+ D +K KL L N + R S+
Sbjct: 211 ------EREL-------------DKIKG-------LKLEELWLDGNSLCDTFRDQSTYIS 244
Query: 121 KTIARLGGLKLLNGSAIERQ 140
R L L+G +
Sbjct: 245 AIRERFPKLLRLDGHELPPP 264
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 46.5 bits (111), Expect = 7e-06
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ L +N+IT L D G S ++ L L+ N I S L++LNL + ++
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184
Score = 45.8 bits (109), Expect = 1e-05
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 351 TCLKLPSNRITTLD--SVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L N I T++ + +LE L LQ N I +V LK L+L+S L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL 203
Query: 409 RNI 411
+
Sbjct: 204 AFM 206
Score = 45.4 bits (108), Expect = 2e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLP 396
+I + K+ + + + +++EL L N + L
Sbjct: 4 EIKQNGNR--YKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPLSQI-SAADLAPFT 58
Query: 397 NLKYLNLASTNLRNI 411
L+ LNL+S L
Sbjct: 59 KLELLNLSSNVLYET 73
Score = 45.4 bits (108), Expect = 2e-05
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L SN + + + S+L L L N + L P+++ L+ A+ N+ +
Sbjct: 63 LNLSSNVLYETLDLESL-STLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVS 115
Query: 413 LN 414
+
Sbjct: 116 CS 117
Score = 43.8 bits (104), Expect = 5e-05
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L L SN++ + + + + L+ N +V + AL NL++ +L
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGT 253
Query: 413 LNK 415
L
Sbjct: 254 LRD 256
Score = 43.8 bits (104), Expect = 6e-05
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 339 ADILKLLANFPVTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSL 395
A + + N V L L N ++ + + LE L L N + E L SL
Sbjct: 27 ASLRQSAWN--VKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNVLY---ETLDLESL 79
Query: 396 PNLKYLNLASTNLRNI 411
L+ L+L + ++ +
Sbjct: 80 STLRTLDLNNNYVQEL 95
Score = 35.0 bits (81), Expect = 0.036
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
+ L +N++ ++ +LE L+ N L+ + ++ +
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGF----------HCGTLRDFFSKNQRVQTVA 268
Query: 413 LN 414
Sbjct: 269 KQ 270
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 47.0 bits (112), Expect = 8e-06
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
+T L ++ IT + + + L +L NNI ++ L NL YL S L
Sbjct: 44 LTSLDCHNSSITDMTGIEK-LTGLTKLICTSNNITT---LD-LSQNTNLTYLACDSNKLT 98
Query: 410 NIKLNK 415
N+ +
Sbjct: 99 NLDVTP 104
Score = 43.5 bits (103), Expect = 8e-05
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L N +T +D + L EL N + + + L L+ + +
Sbjct: 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184
Query: 411 IKLNK 415
+ +++
Sbjct: 185 LDVSQ 189
Score = 43.5 bits (103), Expect = 8e-05
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L + +T LD + L+ L +I D +++G +P L A
Sbjct: 321 VYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD---FSSVGKIPALNNNFEAEGQTIT 375
Query: 411 IKLNK 415
+
Sbjct: 376 MPKET 380
Score = 42.8 bits (101), Expect = 1e-04
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L +N IT LD L L N + + ++ + L L Y + + L +
Sbjct: 196 LNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE---ID-VTPLTQLTYFDCSVNPLTELD 249
Query: 413 LNK 415
++
Sbjct: 250 VST 252
Score = 42.4 bits (100), Expect = 2e-04
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L + +D + L + + + + L L+ + +
Sbjct: 257 TTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGITE 311
Query: 411 IKLNK 415
+ L++
Sbjct: 312 LDLSQ 316
Score = 40.8 bits (96), Expect = 5e-04
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L SN++T +D + L N + + + +L L L+ T+L
Sbjct: 215 TFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE----LDVSTLSKLTTLHCIQTDLLE 268
Query: 411 IKLNK 415
I L
Sbjct: 269 IDLTH 273
Score = 40.4 bits (95), Expect = 7e-04
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 342 LKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400
+ + +T L SN ITTLD ++L L N + + + L L Y
Sbjct: 57 MTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL----DVTPLTKLTY 110
Query: 401 LNLASTNLRNIKLNK 415
LN + L + +++
Sbjct: 111 LNCDTNKLTKLDVSQ 125
Score = 38.9 bits (91), Expect = 0.003
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
T L SN++T LD + L L N + + P L YLN A L
Sbjct: 88 TYLACDSNKLTNLD--VTPLTKLTYLNCDTNKL----TKLDVSQNPLLTYLNCARNTLTE 141
Query: 411 IKLNK 415
I ++
Sbjct: 142 IDVSH 146
Score = 38.1 bits (89), Expect = 0.004
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 357 SNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNK 415
+ + D++ ++L L ++I D + + L L L S N+ + L++
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNITTLDLSQ 83
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 46.7 bits (111), Expect = 9e-06
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 345 LANFPVTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L V L ++I L SV F+ LE+L L +N I + NA L +L LNL
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNL 330
Query: 404 ASTNLRNI 411
+ L +I
Sbjct: 331 SQNFLGSI 338
Score = 45.5 bits (108), Expect = 2e-05
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
V + L N I L+ FS L+ L +++ N L +L L L
Sbjct: 32 VNYVDLSLNSIAELN--ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 407 NLRNI 411
+
Sbjct: 90 QFLQL 94
Score = 44.7 bits (106), Expect = 4e-05
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
LKL N+ L+ G F ++LE L L + N+ N L +L+ L L N+
Sbjct: 84 LKLDYNQFLQLE--TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Query: 409 RNIK 412
+ I+
Sbjct: 142 KKIQ 145
Score = 44.0 bits (104), Expect = 6e-05
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N + ++D MF LE L L N+I G+ + LPNLK L L + L+
Sbjct: 328 LNLSQNFLGSID--SRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLK 384
Query: 410 NI 411
++
Sbjct: 385 SV 386
Score = 40.9 bits (96), Expect = 5e-04
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L + F +SLE L L++NNI + ++ L+L ++
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
Query: 410 NI 411
+I
Sbjct: 168 SI 169
Score = 36.6 bits (85), Expect = 0.014
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
LK+ + F SSL L L N + E A L NL+ L L N
Sbjct: 57 QFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCN 114
Query: 408 LRNIKL 413
L L
Sbjct: 115 LDGAVL 120
Score = 36.3 bits (84), Expect = 0.020
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLAS 405
L L N I L F +L+EL L N + V L +L+ + L +
Sbjct: 350 EVLDLSYNHIRALG--DQSFLGLPNLKELALDTNQLKSV---PDGIFDRLTSLQKIWLHT 404
Score = 35.1 bits (81), Expect = 0.044
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 363 LDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L VP + + + + L N+I + + L +L++L +
Sbjct: 22 LHQVPELPAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPG 67
Score = 31.3 bits (71), Expect = 0.70
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 9/97 (9%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSS------LEELYL 378
I + W N +T L L N + F ++ L L
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES--MAKRFFDAIAGTKIQSLIL 246
Query: 379 QENNIVDWGEV-NALGSLPNLKYLNLASTNLRNIKLN 414
+ + N + L ++ ++ L+
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 46.1 bits (110), Expect = 1e-05
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ +N + L P + SLE + N + E+ L +LP L + + L+ +
Sbjct: 200 IYADNNSLKKL---PDLPLSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTL 252
Score = 41.5 bits (98), Expect = 4e-04
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ + +N + L P + SLE + N + E+ L +LP L + + +L+ +
Sbjct: 158 IDVDNNSLKKL---PDLPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKL 210
Score = 40.0 bits (94), Expect = 0.001
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L + +N + L +P LE L + N + E L + LK +++ + +L+
Sbjct: 114 KSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLPE---LQNSSFLKIIDVDNNSLKK 167
Query: 411 I 411
+
Sbjct: 168 L 168
Score = 39.2 bits (92), Expect = 0.002
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L + +N++ L P + LE L N++ + E NLK L++ LR
Sbjct: 320 EELNVSNNKLIEL---PALPPRLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLRE 371
Query: 411 I 411
Sbjct: 372 F 372
Score = 37.7 bits (88), Expect = 0.006
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
+ +N + L + + L +Y N + + P+L+ LN+ L +
Sbjct: 218 ESIVAGNNILEELPELQNL-PFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTD 271
Query: 411 I 411
+
Sbjct: 272 L 272
Score = 37.7 bits (88), Expect = 0.007
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L+L + +++L P + LE L N++ + E SL +L N L +
Sbjct: 74 HELELNNLGLSSL---PELPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSD 128
Query: 411 I 411
+
Sbjct: 129 L 129
Score = 36.9 bits (86), Expect = 0.011
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNAL-GSLPNLKYLNLASTNLR 409
L SN I +L + SLEEL + N +++ L P L+ L + +L
Sbjct: 300 YYLNASSNEIRSL---CDLPPSLEELNVSNNKLIE------LPALPPRLERLIASFNHLA 350
Query: 410 NI 411
+
Sbjct: 351 EV 352
Score = 36.5 bits (85), Expect = 0.015
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLP-NLKYLNLASTNLR 409
L + N +T L P + SL L + EN + L LP NL YLN +S +R
Sbjct: 260 EALNVRDNYLTDL---PELPQSLTFLDVSENIF------SGLSELPPNLYYLNASSNEIR 310
Query: 410 NI 411
++
Sbjct: 311 SL 312
Score = 34.6 bits (80), Expect = 0.057
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV----------NALGSLP----NL 398
L N + + P + +L++L+++ N + ++ ++ + L +P NL
Sbjct: 342 LIASFNHLAEV---PELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398
Query: 399 KYLNLASTNLRNI 411
K L++ + LR
Sbjct: 399 KQLHVETNPLREF 411
Score = 33.8 bits (78), Expect = 0.10
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
T + +N + TL P + SLE L +++N + D E SL L + L
Sbjct: 240 TTIYADNNLLKTL---PDLPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGL 292
Score = 31.5 bits (72), Expect = 0.57
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L + +N + +P S+E+L + +VD E A + L+ + +
Sbjct: 399 KQLHVETNPLREFPDIPE---SVEDLRMNSERVVDPYEF-AHETTDKLEDDVFEHHHHHH 454
Score = 29.2 bits (66), Expect = 2.6
Identities = 10/68 (14%), Positives = 17/68 (25%), Gaps = 7/68 (10%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW-------GEVNALGSLPNLKYLNLAS 405
S+ +T + S E Y + A+ L +
Sbjct: 16 PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75
Query: 406 TNLRNIKL 413
L N+ L
Sbjct: 76 LELNNLGL 83
Score = 27.7 bits (62), Expect = 9.0
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR 54
P +E L +S N L + E+ L+ +++
Sbjct: 131 PLLEYLGVSNNQLEK---LPEL-QNSSFLKIIDVD 161
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 46.0 bits (109), Expect = 2e-05
Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-----NALGSLPNLKYLNLASTN 407
+ + N ++ + P S L+ ++ + + + + P+L L + S +
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817
Query: 408 LRNI 411
+R +
Sbjct: 818 IRKV 821
Score = 42.9 bits (101), Expect = 1e-04
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 353 LKLPSNRITTLDSVPGMF--SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
+ N + + + L L N + + A G+ L L L +
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQIEE 609
Query: 411 I 411
I
Sbjct: 610 I 610
Score = 42.2 bits (99), Expect = 3e-04
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 351 TCLKLPSNRITTLDSVP----------GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400
L + NR + + ++ Y+ NN+ ++ +L + L
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 401 LNLASTNLRNI 411
L+ +R++
Sbjct: 578 LDCVHNKVRHL 588
Score = 42.2 bits (99), Expect = 3e-04
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 355 LPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+P N + D L + L+ N + + +LP L ++++ +
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Score = 41.4 bits (97), Expect = 5e-04
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 19/145 (13%)
Query: 282 KASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADI 341
S E + D E ++ ++ +++ + N
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419
Query: 342 LKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNI-----------VDWGEVN 390
+ + T + +NRIT + + L+ +Y + +
Sbjct: 420 DSRI-SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478
Query: 391 -------ALGSLPNLKYLNLASTNL 408
+ +L +L + L +
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPN 503
Score = 41.0 bits (96), Expect = 7e-04
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
LKL N+I + + +E L N + + S+ + ++ + + +
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659
Score = 36.8 bits (85), Expect = 0.012
Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 353 LKLPSNRITTL------DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
+ N+I + + + L N I + + + + L++
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNN 707
Query: 407 NLRNIKLNKEG 417
+ +I N
Sbjct: 708 LMTSIPENSLK 718
Score = 36.0 bits (83), Expect = 0.027
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 371 SSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLRNI 411
+ L L G V +A+G L LK L+ + +
Sbjct: 323 GRVTGLSLAGFGA--KGRVPDAIGQLTELKVLSFGTHSETVS 362
Score = 33.3 bits (76), Expect = 0.17
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L++ SN I +D + L L + +N + +V ++ L ++
Sbjct: 809 IQLQIGSNDIRKVD--EKLTPQLYILDIADNPNIS-IDVTSVCPYIEAGMYVLLYDKTQD 865
Query: 411 IK 412
I+
Sbjct: 866 IR 867
Score = 32.9 bits (75), Expect = 0.23
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 5/68 (7%)
Query: 350 VTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
VT L L VP + L+ L ++ G + L
Sbjct: 325 VTGLSLAGFGAKG--RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382
Query: 407 NLRNIKLN 414
+ K
Sbjct: 383 IRMHYKKM 390
Score = 29.5 bits (66), Expect = 2.3
Identities = 9/110 (8%), Positives = 30/110 (27%), Gaps = 12/110 (10%)
Query: 311 NDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFP--VTCLKLPSNRITTLDSVPG 368
+ + + ++ I K+ ++ + L + I +
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM-K 415
Query: 369 MFSSLEELYLQENNIVDWGEVNALGSLP-------NLKYLNLASTNLRNI 411
+ L++ I + N + + L+ + A++
Sbjct: 416 PIKKDSRISLKDTQIGNLT--NRITFISKAIQRLTKLQIIYFANSPFTYD 463
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 44.6 bits (106), Expect = 2e-05
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 357 SNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ L+ F + + ++ + + + +AL LP LK+L + +T L+
Sbjct: 65 DVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120
Score = 43.8 bits (104), Expect = 3e-05
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
LKL + T+ FS ++ +Y+ + + E ++ +L + ++ + +T
Sbjct: 33 TQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 407 N-LRNI 411
L I
Sbjct: 91 RNLTYI 96
Score = 41.9 bits (99), Expect = 1e-04
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 353 LKLPSNRITTLDSVPGMF--SSLEELYLQENNIVDWGEVNALGSLPN-LKYLNLASTNLR 409
LKL +N T++ F + L+ +YL +N + + +A G + + L+++ T++
Sbjct: 161 LKLYNNGFTSVQ--GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
Query: 410 NI 411
+
Sbjct: 219 AL 220
Score = 37.7 bits (88), Expect = 0.004
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 353 LKLPSNRITTLDSVPGMFS--SLEELYLQENNIVDWGEVNALGSLPN-LKYLNLASTNLR 409
L + + + + ++S L + +N + VNA L N L L +
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169
Query: 410 NI 411
++
Sbjct: 170 SV 171
Score = 37.3 bits (87), Expect = 0.005
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 353 LKLPSNR-ITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
+++ + R +T +D P L+ L + + + ++ + S L +
Sbjct: 85 IEIRNTRNLTYID--PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142
Score = 36.5 bits (85), Expect = 0.011
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 351 TCLKLPSNRITT--LDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN- 407
C + R+T + +P + S + L L E ++ +A +LPN+ + ++
Sbjct: 9 ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVT 67
Query: 408 LRNI 411
L+ +
Sbjct: 68 LQQL 71
Score = 32.7 bits (75), Expect = 0.15
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 353 LKLPSNR-ITTLDSVPGMF----SSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
+ L N+ +T +D F S L + + ++ L L L N
Sbjct: 184 VYLNKNKYLTVID--KDAFGGVYSGPSLLDVSQTSVTAL-PSKGLEHLKELIARNT 236
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 44.8 bits (106), Expect = 3e-05
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
L L +N I +D F + L++LYL +N I + LP L L+L+S
Sbjct: 117 LLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174
Query: 408 LRNI 411
L+ +
Sbjct: 175 LKKL 178
Score = 44.8 bits (106), Expect = 3e-05
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
L L SN + TLD +F +LE L L N+I VD A + L+ L L+
Sbjct: 93 LDLSSNHLHTLD--EFLFSDLQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQ 147
Query: 408 LRNI 411
+
Sbjct: 148 ISRF 151
Score = 40.2 bits (94), Expect = 9e-04
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 346 ANFPV--TCLKLPSNRITTL--DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401
+ P L L N ++ L + P ++L L L N++ A +PNL+YL
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYL 93
Query: 402 NLASTNLRNI 411
+L+S +L +
Sbjct: 94 DLSSNHLHTL 103
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 43.9 bits (104), Expect = 7e-05
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW----GEV-NALGSLPNLKYLNLASTN 407
+ L N + + P S+L+ ++ E + P+L L + S +
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577
Query: 408 LRNI 411
+R +
Sbjct: 578 IRKV 581
Score = 43.1 bits (102), Expect = 2e-04
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
+ + N + T V L L N + G++ A GS L LNLA +
Sbjct: 310 IYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLE--GKLPAFGSEIKLASLNLAYNQIT 366
Query: 410 NI 411
I
Sbjct: 367 EI 368
Score = 41.2 bits (97), Expect = 6e-04
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L L N+IT + + G +E L N + + S+ + ++ + + ++
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417
Query: 412 KLN 414
Sbjct: 418 DGK 420
Score = 38.5 bits (90), Expect = 0.003
Identities = 8/60 (13%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
L++ SN I ++ + ++ L +++N + +++ + L ++I+
Sbjct: 571 LQIGSNDIRKVN--EKITPNISVLDIKDNPNIS-IDLSYVCPYIEAGMYMLFYDKTQDIR 627
Score = 38.1 bits (89), Expect = 0.006
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 355 LPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+P N + + L + L+ N + + +LP L ++L+ +
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528
Score = 37.3 bits (87), Expect = 0.008
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 355 LPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLRNIKL 413
+ LD P ++ + L N I + L +NL L I
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLTEIPK 474
Query: 414 N 414
N
Sbjct: 475 N 475
Score = 37.3 bits (87), Expect = 0.009
Identities = 8/88 (9%), Positives = 24/88 (27%), Gaps = 16/88 (18%)
Query: 340 DILKLLANFPVTCLKLPS---------NRITTLDSVPGMFSSLEELYLQENNIV------ 384
+ + + L +T L + ++ + + N +
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292
Query: 385 -DWGEVNALGSLPNLKYLNLASTNLRNI 411
DW + ++ + + NL+
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTF 320
Score = 36.2 bits (84), Expect = 0.019
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 371 SSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLRNIKLN 414
+ L L+ G V +A+G L L+ L L S + +
Sbjct: 81 GRVTGLSLEGFGA--SGRVPDAIGQLTELEVLALGSHGEKVNERL 123
Score = 33.9 bits (78), Expect = 0.11
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEV--NALGSLPNLKYLNLASTNLR 409
L+ N++ + G L L L N I E+ N G ++ L+ A L+
Sbjct: 335 LECLYNQLEGKLPAF-GSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLK 390
Query: 410 NI 411
I
Sbjct: 391 YI 392
Score = 33.1 bits (76), Expect = 0.18
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 350 VTCLKLPSNRITTLDSVP---GMFSSLEELYLQENNIVDWGEV---NALGSLPNLKYLNL 403
VT L L + VP G + LE L L + + + + + +
Sbjct: 83 VTGLSLEGFGASG--RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140
Query: 404 ASTNLRNIKLN 414
+ + ++
Sbjct: 141 MRMHYQKTFVD 151
Score = 31.6 bits (72), Expect = 0.52
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW-----GEVNALGSLPNLKYLNLASTN 407
+ SN IT + + L + Y+ + V E K +L N
Sbjct: 188 IGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247
Query: 408 LRNIK 412
L+++
Sbjct: 248 LKDLT 252
Score = 30.8 bits (70), Expect = 0.88
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 353 LKLPSNRITTLDSVP---GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
NR P + SL +L + N+I +VN PN+ L++
Sbjct: 547 RDAQGNRTLR--EWPEGITLCPSLTQLQIGSNDIR---KVNE-KITPNISVLDIKDNPNI 600
Query: 410 NIKLN 414
+I L+
Sbjct: 601 SIDLS 605
Score = 30.0 bits (68), Expect = 1.6
Identities = 10/107 (9%), Positives = 26/107 (24%), Gaps = 12/107 (11%)
Query: 311 NDTSGVMEQIFPQ--GHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVP- 367
+ P+ + + + + L + I +
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174
Query: 368 -----GMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
+ ++ NNI V A+ L L+ + ++
Sbjct: 175 IKKSSRITLKDTQIGQLSNNI---TFVSKAVMRLTKLRQFYMGNSPF 218
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 43.7 bits (104), Expect = 9e-05
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 353 LKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L + N+I+ V +LE L + NN + LG L++L+++ L
Sbjct: 183 LAISGNKIS--GDVDVSRCVNLEFLDVSSNNFS--TGIPFLGDCSALQHLDISGNKL 235
Score = 42.2 bits (100), Expect = 3e-04
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 353 LKLPSNRIT-TL-DSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
L L N+ T + D + G +L L L N+ G V GS L+ L L+S N
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY--GAVPPFFGSCSLLESLALSSNNF 330
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 353 LKLPSNRITTLDSVP--GMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
L + SN +T +P G S+L+ L + N + G+ A+ + LK LN++S
Sbjct: 205 LDVSSNNFST--GIPFLGDCSALQHLDISGNKLS--GDFSRAISTCTELKLLNISSNQF 259
Score = 39.1 bits (92), Expect = 0.002
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 29/114 (25%)
Query: 324 GHIHTLTLGNMGYIWA--DILKLLANFP-VTCLKLPSNRIT-------------TLD--- 364
+ ++ L + + L + + L L ++ I +LD
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 365 -----SVP-----GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
V G S L+ L + N + G+V+ L +L+ L+L++ ++
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Score = 38.4 bits (90), Expect = 0.004
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 353 LKLPSNRITTLDSVP---GMFSSLEELYLQENNIVDWGEV--NALGSLPNLKYLNLASTN 407
L L N +VP G S LE L L NN GE+ + L + LK L+L+
Sbjct: 299 LDLSGNHFY--GAVPPFFGSCSLLESLALSSNNFS--GELPMDTLLKMRGLKVLDLSFNE 354
Query: 408 L 408
Sbjct: 355 F 355
Score = 38.0 bits (89), Expect = 0.007
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 353 LKLPSNRITTLDSVPGMF--SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTNL 408
L + SN + V G +SLE L L N+I + LK+L ++ +
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190
Score = 37.2 bits (87), Expect = 0.009
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 353 LKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
L L +N T + S L L+L N + G + ++LGSL L+ L L L
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNML 454
Score = 34.1 bits (79), Expect = 0.089
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 353 LKLPSNRITTLDSVP---GMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
L L N +T +P ++L + L N + GE+ +G L NL L L++ +
Sbjct: 471 LILDFNDLT--GEIPSGLSNCTNLNWISLSNNRLT--GEIPKWIGRLENLAILKLSNNSF 526
Score = 33.3 bits (77), Expect = 0.16
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 368 GMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
G S L +L L N + GE+ L + L+ L L +L
Sbjct: 439 GSLSKLRDLKLWLNMLE--GEIPQELMYVKTLETLILDFNDL 478
Score = 32.6 bits (75), Expect = 0.29
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 353 LKLPSNRITTLDSVP---GMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
+ L +NR+T +P G +L L L N+ G + LG +L +L+L +
Sbjct: 495 ISLSNNRLT--GEIPKWIGRLENLAILKLSNNSFS--GNIPAELGDCRSLIWLDLNTNLF 550
Score = 29.9 bits (68), Expect = 2.0
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
L L N I+ S+P L L L N + G + A+ +L L ++L++ NL
Sbjct: 661 LNLGHNDIS--GSIPDEVGDLRGLNILDLSSNKLD--GRIPQAMSALTMLTEIDLSNNNL 716
Score = 29.5 bits (67), Expect = 2.5
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 11/63 (17%)
Query: 353 LKLPSNRITTLDSVPG----MFSSLEELYLQENNIVDWGEV-NALG--SLPNLKYLNLAS 405
L L N + +P + +SL L L NN G + L L+ L L +
Sbjct: 348 LDLSFNEFS--GELPESLTNLSASLLTLDLSSNNF--SGPILPNLCQNPKNTLQELYLQN 403
Query: 406 TNL 408
Sbjct: 404 NGF 406
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 43.0 bits (101), Expect = 9e-05
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L + + G+ + L L L N + + LP + L+L +
Sbjct: 258 LNLSFTGLKQVP--KGLPAKLSVLDLSYNRL---DRNPSPDELPQVGNLSLKGNPFLD 310
Score = 40.7 bits (95), Expect = 5e-04
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 353 LKLPSNRITTLDSVP----GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L L + + T V L+ L L N++ D + L LNL+ T L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Query: 409 RNI 411
+ +
Sbjct: 266 KQV 268
Score = 37.2 bits (86), Expect = 0.007
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 326 IHTLTLGNM----GYIWADILKLLANFPVTCLKLPSNRITTL-DSVPGMFSSLEELYLQE 380
++ L L N+ W L+ + L + +F +L L L +
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182
Query: 381 NNIV-DWGEVNAL--GSLPNLKYLNLASTNLRNI 411
N + + G ++AL P L+ L L + +
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Score = 33.7 bits (77), Expect = 0.093
Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 7/110 (6%)
Query: 305 NKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANF--PVTCLKLPSNRITT 362
IP+ ++ + LTL N+ LL + L L + T
Sbjct: 76 RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135
Query: 363 LDSVPGMFSSLEELYLQ----ENNIVDWGEVNALGSLPNLKYLNLASTNL 408
D+ + L+ + P L L+L S N
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL-SDNP 184
Score = 30.3 bits (68), Expect = 1.1
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITC--QLKHLRHLNLR 54
P + LDLS N + C + L+ L LR
Sbjct: 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209
Score = 29.9 bits (67), Expect = 1.5
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 329 LTLGNMGYIWA---DILKLLANFPVTCLKLPSNRITTLDSVPGMF---SSLEELYLQENN 382
LT+ L++L + L L + +T P + L L L+ +
Sbjct: 73 LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132
Query: 383 IVDWG-EVNALGSL--PNLKYLNLASTNLRNIKLNKEGHYR 420
+ L P LK L++A + N + +
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173
Score = 28.3 bits (63), Expect = 5.3
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 23 EDLDLSRNLLASWFAVGEITCQ-LKHLRHLNL 53
+ LDLS N L A G +C L LNL
Sbjct: 231 QGLDLSHNSLRD--AAGAPSCDWPSQLNSLNL 260
Score = 27.6 bits (61), Expect = 9.3
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 22 IEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR 54
+ LDLS N L +L + +L+L+
Sbjct: 276 LSVLDLSYNRLDR----NPSPDELPQVGNLSLK 304
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 42.8 bits (101), Expect = 1e-04
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N++ +L + +L L + N + + AL L L+ L L L+
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKT 138
Query: 411 I 411
+
Sbjct: 139 L 139
Score = 41.2 bits (97), Expect = 3e-04
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
+ P T L L N + T L +L L + ++ G+LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGT 81
Query: 401 LNLASTNLRNI 411
L+L+ L+++
Sbjct: 82 LDLSHNQLQSL 92
Score = 40.9 bits (96), Expect = 5e-04
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 353 LKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
L L N + TL PG+ + LE+L L NN+ + L L NL L L +L
Sbjct: 129 LYLKGNELKTLP--PGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY 185
Query: 410 NI 411
I
Sbjct: 186 TI 187
Score = 39.3 bits (92), Expect = 0.001
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L ++P + L+L EN + + + L L LNL L +
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKL 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 42.2 bits (100), Expect = 2e-04
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNL 398
D+L+ L+L S + S L+ + + ++ E+ + + L
Sbjct: 73 DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGL 129
Query: 399 KYLNLASTNLRNI 411
+ L LA LR +
Sbjct: 130 ETLTLARNPLRAL 142
Score = 37.6 bits (88), Expect = 0.005
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTN 407
LK+ ++ ++ L LEEL L+ + G LK L L +
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL--RNYPPIFGGRAPLKRLILKDCS 264
Score = 37.6 bits (88), Expect = 0.006
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENN--------IVDWGEVNALGSLPNLKYLN 402
L L N + L + + L EL ++ + L NL+ L
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 403 LASTNLRNI 411
L T +R++
Sbjct: 190 LEWTGIRSL 198
Score = 37.6 bits (88), Expect = 0.006
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
L+L I +L + +L+ L ++ + + + A+ LP L+ L+L
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS---ALGPAIHHLPKLEELDLRGCTA 241
Score = 33.0 bits (76), Expect = 0.17
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 354 KLPSN--RITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLRN 410
+LP G+ +L+ L L+ I + ++ +L NLK L + ++ L
Sbjct: 165 ELPEPLASTDASGEHQGL-VNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSA 220
Query: 411 I 411
+
Sbjct: 221 L 221
Score = 28.4 bits (64), Expect = 4.6
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 358 NRITTL-DSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLRNIKLN 414
+ + TL + + LE+L L+ + + + + LP + + + +
Sbjct: 264 SNLLTLPLDI-HRLTQLEKLDLRGCVNL--SRLPSLIAQLPANCIILVPPHLQAQLDQH 319
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 70/478 (14%), Positives = 149/478 (31%), Gaps = 126/478 (26%)
Query: 1 MDSRVSNAGKTHDEIEQAV--PFIEDL------DLSRNLLASWFAVGEITCQ---LKHLR 49
MD + +I F+++ D+ +++L+ + I +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTL 65
Query: 50 HLNLRIRLKSSSA----------PAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99
L + K + +L + ++ ++++ L+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----- 120
Query: 100 SSLRFTKNPILAEERVVSSREKTIARL-GGLKLLN-----------GS-----AIE--RQ 140
N + A+ V SR + +L L L GS A++
Sbjct: 121 -----NDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 141 ERQGSEYDYIKEFGAVWLD--EKRRAEFLEAN-----PRVGDNYFQVMEDDIGLRVCDSE 193
+ + D F WL+ E + ++ N+ + +++
Sbjct: 174 YKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 194 GHRGTIRYVGSVEGTQG------VWYGIDWDS---------ETRGKHDGSHNGVKYFWTH 238
R + S V W++ TR K V F +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK------QVTDFLSA 283
Query: 239 STTSGSFMRRDKLNFGSSFMEALHRKYVETD-----------NELTVR---ENVEEVKAS 284
+TT+ + + +++L KY++ N + E++ + A+
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 285 INAPFLELVGFDQVHE--EQNTNKLPIPNDTSGVMEQ--IFPQG-HIHTLTLGNMGYIWA 339
+ + V D++ E + N L P + + ++ +FP HI T+ L IW
Sbjct: 344 WD--NWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILL---SLIWF 397
Query: 340 D--------ILKLLANFPVTCLKLPSNRITTLDSVPGMFSSL----EELYLQENNIVD 385
D ++ L + + ++ T S+P ++ L E Y +IVD
Sbjct: 398 DVIKSDVMVVVNKLHKY--SLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVD 451
Score = 42.5 bits (99), Expect = 3e-04
Identities = 54/376 (14%), Positives = 114/376 (30%), Gaps = 127/376 (33%)
Query: 5 VSNAGKTHDEIEQ-AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAP 63
+S A TH ++ ++ D ++LL + + C+ + L L P
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE--VKSLLLKY-----LDCRPQDLPREVLTT------NP 327
Query: 64 -AHSYLAEVV--------FFVHLGRTLCDE-DFVKEGSLLHYLPKLSSLRFTKNPILAEE 113
S +AE + + H+ CD+ + E SL P F + +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVN---CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 114 RVVSSREKTIARL-GGL----------KLLNGSAIERQERQGSEYDYIKEFGAVWLDEKR 162
+ ++ + + KL S +E+Q ++ + +++L+ K
Sbjct: 385 AHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLELKV 437
Query: 163 RAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTI-RYVGSVEGTQGVWYGIDWDSET 221
+ +E++ L HR + Y + D D
Sbjct: 438 K-----------------LENEYAL-------HRSIVDHY--------NIPKTFDSDDLI 465
Query: 222 RGKHDGSHNGVKYFWTH---------STTSGSFMRRDKLNFGSSFMEA------------ 260
D YF++H + R L+F F+E
Sbjct: 466 PPYLDQ------YFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNAS 517
Query: 261 -----------LHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTN--KL 307
++ Y+ DN+ V + FL + + + + T+ ++
Sbjct: 518 GSILNTLQQLKFYKPYI-CDNDPKYERLVNAILD-----FLPKIE-ENLICSKYTDLLRI 570
Query: 308 PIPNDTSGVMEQIFPQ 323
+ + + E+ Q
Sbjct: 571 ALMAEDEAIFEEAHKQ 586
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 40.5 bits (96), Expect = 3e-04
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLR 409
+ L+ +T L + G +L + E+ A+G LP L L
Sbjct: 76 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT---ELKAAVGELPEKSKLQEIYQELT 132
Query: 410 NI 411
+
Sbjct: 133 QL 134
Score = 40.1 bits (95), Expect = 3e-04
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLR 409
+ L+ +T L + G +L + + A+G LP L L
Sbjct: 53 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT---RLKAAVGELPEKSKLQEIYQELT 109
Query: 410 NI 411
+
Sbjct: 110 EL 111
Score = 38.6 bits (91), Expect = 0.001
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLR 409
+ L+ +T L + G +L + + A+G LP L L
Sbjct: 7 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT---RLKAAVGELPEKSKLQEIYQELT 63
Query: 410 NI 411
+
Sbjct: 64 RL 65
Score = 37.4 bits (88), Expect = 0.003
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 351 TCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
+ L+ +T L +V G +L + ++ A+G LP+ L
Sbjct: 99 SKLQEIYQELTELKAAV-GELPEKSKLQEIYQELT---QLKAAVGELPDQSKQQQIYQEL 154
Query: 409 RNI 411
++
Sbjct: 155 TDL 157
Score = 32.8 bits (76), Expect = 0.087
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 368 GMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLRNI 411
G +L + + A+G LP L L +
Sbjct: 1 GELPEKSKLQEIYQELT---RLKAAVGELPEKSKLQEIYQELTRL 42
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 41.2 bits (97), Expect = 3e-04
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLAS 405
+ +N+IT ++ G F S + E+ L N + V L +LK L L S
Sbjct: 60 RKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLENVQHK---MFKGLESLKTLMLRS 114
Query: 406 TNLRNI 411
+ +
Sbjct: 115 NRITCV 120
Score = 38.5 bits (90), Expect = 0.002
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 346 ANFP--VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKY 400
+ P L+L +N T L++ G+F L ++ N I D E A +
Sbjct: 28 EHIPQYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNE 85
Query: 401 LNLASTNLRNI 411
+ L S L N+
Sbjct: 86 ILLTSNRLENV 96
Score = 38.1 bits (89), Expect = 0.003
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 350 VTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
V + L SNR+ + MF SL+ L L+ N I ++ L +++ L+L
Sbjct: 83 VNEILLTSNRLENVQ--HKMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDN 139
Query: 407 NLRNI 411
+ +
Sbjct: 140 QITTV 144
Score = 37.7 bits (88), Expect = 0.004
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLAS 405
L L SNRIT + F SS+ L L +N I V G A +L +L LNL +
Sbjct: 108 KTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLA 162
Score = 36.2 bits (84), Expect = 0.012
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L+ +P + EL L N LP L+ +N ++ + +I
Sbjct: 23 LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 41.8 bits (98), Expect = 3e-04
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQEN--NIVDWGEVNALGSLP-NLKYLNLASTN 407
L L N + V M ++ L + N ++ + + ++ LNL+S
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439
Query: 408 L 408
L
Sbjct: 440 L 440
Score = 40.2 bits (94), Expect = 0.001
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 22/87 (25%)
Query: 351 TCLKLPSNRITTLD---------------------SVP-GMFSSLEELYLQENNIVDWGE 388
L+L NRI +LD ++ +SL L L N+
Sbjct: 79 RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPV 138
Query: 389 VNALGSLPNLKYLNLASTNLRNIKLNK 415
G+L L +L L++ R + L
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLP 165
Score = 39.9 bits (93), Expect = 0.001
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 346 ANFP--VTCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
+ P L L N I+ L S L L L N I + + +L+Y
Sbjct: 48 KDLPPRTKALSLSQNSISELR--MPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEY 104
Query: 401 LNLASTNLRNI 411
L+++ L+NI
Sbjct: 105 LDVSHNRLQNI 115
Score = 34.8 bits (80), Expect = 0.046
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 19/67 (28%)
Query: 353 LKLPSNRITTL--DSVPGMFSSLEELYLQENNI------VDWGEVNALGSLPNLKYLNLA 404
L L SN +T +P ++ L L N I V L L+ LN+A
Sbjct: 433 LNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMSIPKDVT--------HLQALQELNVA 481
Query: 405 STNLRNI 411
S L+++
Sbjct: 482 SNQLKSV 488
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 40.8 bits (96), Expect = 3e-04
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLAS 405
+ L +N+I+ L P F SL L L N I + L +L+ L L +
Sbjct: 59 RRIDLSNNQISELA--PDAFQGLRSLNSLVLYGNKITELPKS---LFEGLFSLQLLLLNA 113
Query: 406 TNLRNI 411
+ +
Sbjct: 114 NKINCL 119
Score = 39.6 bits (93), Expect = 9e-04
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 346 ANFP--VTCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
N P +T ++L N I + PG FS L + L N I + +A L +L
Sbjct: 28 TNLPETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNS 84
Query: 401 LNLASTNLRNI 411
L L + +
Sbjct: 85 LVLYGNKITEL 95
Score = 38.1 bits (89), Expect = 0.003
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
L L N+IT L +F SL+ L L N I + A L NL L+L
Sbjct: 85 LVLYGNKITELP--KSLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNK 139
Query: 408 LRNI 411
L+ I
Sbjct: 140 LQTI 143
Score = 35.4 bits (82), Expect = 0.020
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L +P + ++ E+ L++N I A L+ ++L++ + +
Sbjct: 23 LTEIPTNLPETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISEL 71
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 41.3 bits (96), Expect = 4e-04
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
+ C + + +L +PG +L ELY++ + E+ L L L+ L + + LR
Sbjct: 13 LRCTR--DGALDSLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 410 NI 411
+
Sbjct: 70 FV 71
Score = 39.0 bits (90), Expect = 0.002
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 339 ADILKLLANFP----VTCLKLPSNR-ITTLDSVPGMF---SSLEELYLQENNIVDWGEVN 390
L L + P +T L + + + + L+ L L + ++ + +
Sbjct: 18 DGALDSLHHLPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFV-APD 74
Query: 391 ALGSLPNLKYLNLASTNLRNI 411
A P L LNL+ L ++
Sbjct: 75 AFHFTPRLSRLNLSFNALESL 95
Score = 28.2 bits (62), Expect = 5.7
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 325 HIHTLTLGNMG--YIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS--SLEELYLQE 380
+ LT+ G ++ D ++ L L N + +L SL+EL L
Sbjct: 57 ELRNLTIVKSGLRFVAPDAFHFTPR--LSRLNLSFNALESLS--WKTVQGLSLQELVLSG 112
Query: 381 N 381
N
Sbjct: 113 N 113
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 38.2 bits (89), Expect = 0.001
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 350 VTCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAS 405
V C R T S+P EL L NN+ L +LP L+ +L +
Sbjct: 13 VDC----GRRGLTWASLPTAFPVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGA 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 39.6 bits (93), Expect = 0.001
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
+N P L L SN++++L F L LYL +N + L NL+
Sbjct: 33 SNIPADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLET 89
Query: 401 LNLASTNLRNI 411
L + L+ +
Sbjct: 90 LWVTDNKLQAL 100
Score = 39.6 bits (93), Expect = 0.001
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
L + N++ L G+F +L EL L N + SL L YL+L
Sbjct: 88 ETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNE 144
Query: 408 LRNI 411
L+++
Sbjct: 145 LQSL 148
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
T L L N + +L G+F +SL+EL L N + A L LK L L +
Sbjct: 136 TYLSLGYNELQSLP--KGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQ 192
Query: 408 LRNI 411
L+ +
Sbjct: 193 LKRV 196
Score = 38.4 bits (90), Expect = 0.003
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L ++P + + ++L LQ N + A L L+ L L L+ +
Sbjct: 28 LTAIPSNIPADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTL 76
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 40.3 bits (94), Expect = 0.001
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
+ +N++T L P + +SLE L ++ N + E +L+ L++++ L +
Sbjct: 143 EYINADNNQLTML---PELPTSLEVLSVRNNQLTFLPE-----LPESLEALDVSTNLLES 194
Query: 411 I 411
+
Sbjct: 195 L 195
Score = 36.5 bits (84), Expect = 0.018
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNAL-GSLPNLKYLNLASTNL 408
+T L++ N + +L P + +SLE L +N + + L +LK+L++ + L
Sbjct: 82 ITVLEITQNALISL---PELPASLEYLDACDNRL------STLPELPASLKHLDVDNNQL 132
Query: 409 RNI 411
+
Sbjct: 133 TML 135
Score = 34.2 bits (78), Expect = 0.087
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 15/65 (23%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLP----NLKYLNLAST 406
+ L+L +++L + + L + +N L SLP +L+YL+
Sbjct: 62 SELQLNRLNLSSLP--DNLPPQITVLEITQNA---------LISLPELPASLEYLDACDN 110
Query: 407 NLRNI 411
L +
Sbjct: 111 RLSTL 115
Score = 34.2 bits (78), Expect = 0.090
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEE----LYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L + +N + +L +VP EE +EN I E + SL + L L
Sbjct: 185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPL 242
Score = 29.9 bits (67), Expect = 1.6
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 16/66 (24%)
Query: 353 LKLPSNRITTLDSVP--GMFSSLEELYLQENNIVDWGEVNALGSLP-----NLKYLNLAS 405
LP S+ + + EL L N L SLP + L +
Sbjct: 39 QALPGENRNEAVSLLKECLINQFSELQLNRLN---------LSSLPDNLPPQITVLEITQ 89
Query: 406 TNLRNI 411
L ++
Sbjct: 90 NALISL 95
Score = 29.6 bits (66), Expect = 2.2
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVD--WGEVNALGSLPNLKYLNLASTNLRN 410
+ NRIT + + L++N + ++ + P+ + +
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L + NR+T+L +P L L + N + E +L L + +NL L
Sbjct: 244 KELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSE 298
Query: 411 I 411
Sbjct: 299 R 299
Score = 39.5 bits (92), Expect = 0.002
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L +NR+T+L ++P L+EL + N + LK L ++ L +
Sbjct: 204 YKLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTS 255
Query: 411 I 411
+
Sbjct: 256 L 256
Score = 39.1 bits (91), Expect = 0.003
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNI 383
HI TL + + ++ L A P + L++ N++T+L +P L ++
Sbjct: 62 HITTLVIPDN-----NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL 116
Query: 384 VD--------WGEVNALGSLP----NLKYLNLASTNLRNI 411
W N L SLP L+ L+++ L ++
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL 156
Score = 37.6 bits (87), Expect = 0.007
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNAL-GSLPNLKYLNLASTNLR 409
L + N++ +L P + S L +L+ N + +L L+ L+++ L
Sbjct: 144 QELSVSDNQLASL---PALPSELCKLWAYNNQL------TSLPMLPSGLQELSVSDNQLA 194
Query: 410 NI 411
++
Sbjct: 195 SL 196
Score = 31.8 bits (72), Expect = 0.51
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNI--VDWGEVNALGSLPNL 398
L + N++T L SS + L+ N + + + S P
Sbjct: 264 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 39.4 bits (93), Expect = 0.001
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 350 VTCLKLPSNRITTLDSVP---GMFSSLEELYLQ-ENNIVDWGEV-NALGSLPNLKYLNLA 404
V L L + +P L LY+ NN+V G + A+ L L YL +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYIT 109
Query: 405 STNL 408
TN+
Sbjct: 110 HTNV 113
Score = 38.3 bits (90), Expect = 0.003
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 353 LKLPSNRITTLDSVP---GMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
L + ++ ++P +L L N + G + ++ SLPNL + +
Sbjct: 106 LYITHTNVS--GAIPDFLSQIKTLVTLDFSYNALS--GTLPPSISSLPNLVGITFDGNRI 161
Score = 35.2 bits (82), Expect = 0.030
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 353 LKLPSNRITTLDSVP--GMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
+ L N + + G+ +L L L+ N I G + L L L LN++ NL
Sbjct: 226 IHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRIY--GTLPQGLTQLKFLHSLNVSFNNL 280
Score = 30.2 bits (69), Expect = 1.4
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 350 VTCLKLPSNRITTLDSVPGMFS--SLEELYLQENNIVDWGEV-NALGSLPNLKYLNLAST 406
T + + NR+T +P F+ +L + L N + G+ GS N + ++LA
Sbjct: 176 FTSMTISRNRLT--GKIPPTFANLNLAFVDLSRNMLE--GDASVLFGSDKNTQKIHLAKN 231
Query: 407 NL 408
+L
Sbjct: 232 SL 233
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
glutaminase, thioester intermediate, ligas; HET: ADP;
1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
3umm_A*
Length = 1303
Score = 38.1 bits (88), Expect = 0.006
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 15/126 (11%)
Query: 49 RHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNP 108
R L R ++++ H+ AE V F L L D + + LL Y P LSS
Sbjct: 23 RINKLLARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPALSSHTPAGKL 82
Query: 109 ILAEERVV-----SSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRR 163
+L R SS+ IA GL ++R ER G Y A L ++
Sbjct: 83 LLVTPRPGTISPWSSKATDIAHNCGL-----QQVDRLER-GVAY----YIEASTLTAEQW 132
Query: 164 AEFLEA 169
+
Sbjct: 133 RQVAAE 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 36.1 bits (84), Expect = 0.019
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 338 WADILKLLANFPVTCLKLPSNRIT-----TLDSVPGMFSSLEELYLQENNIVDWGEVNAL 392
WA++L LL ++L +T + S + +L EL L+ N + D G V+ +
Sbjct: 20 WAELLPLLQQ--CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG-VHCV 76
Query: 393 GSL-----PNLKYLNLASTNL 408
++ L+L + L
Sbjct: 77 LQGLQTPSCKIQKLSLQNCCL 97
Score = 35.7 bits (83), Expect = 0.023
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 347 NFPVTCLKLPSNRITT-----LDSVPGMFSSLEELYLQENNIVDWGEVNALG-----SLP 396
+ L + S T SV L EL + N + D G V L
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG-VRELCQGLGQPGS 370
Query: 397 NLKYLNLASTNLRN 410
L+ L LA ++ +
Sbjct: 371 VLRVLWLADCDVSD 384
Score = 35.7 bits (83), Expect = 0.026
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 371 SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
++ L +Q + D L L + + L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL 40
Score = 33.4 bits (77), Expect = 0.13
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 347 NFPVTCLKLPSNRITT-----LDSVPGMFSSLEELYLQENNIVDWGEVNALG-----SLP 396
+ L+L ++ L SV +EL + N+I + G V L S
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG-VRVLCQGLKDSPC 199
Query: 397 NLKYLNLASTNL 408
L+ L L S +
Sbjct: 200 QLEALKLESCGV 211
Score = 33.4 bits (77), Expect = 0.13
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 344 LLANFPVTCLKLPSNRIT-----TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL--- 395
L + + L + IT L V SL+EL L N + D G L
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG-ARLLCETLLE 310
Query: 396 --PNLKYLNLASTNL 408
L+ L + S +
Sbjct: 311 PGCQLESLWVKSCSF 325
Score = 31.9 bits (73), Expect = 0.42
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 339 ADILKLLANFPVTCLKLPSNRITT-----LDSVPGMFSSLEELYLQENNIVDWGEVNALG 393
L+ + + L L + +T L S +L+EL+L +N + D G + L
Sbjct: 77 LQGLQT-PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-LQLLC 134
Query: 394 SL-----PNLKYLNLASTNL 408
L+ L L +L
Sbjct: 135 EGLLDPQCRLEKLQLEYCSL 154
Score = 31.5 bits (72), Expect = 0.57
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 371 SSLEELYLQENNIVDWGE---VNALGSLPNLKYLNL 403
S L L+L + ++ D L + +L+ L+L
Sbjct: 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405
Score = 29.5 bits (67), Expect = 2.2
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 350 VTCLKLPSNRITT-----LDSVPGMFSSLEELYLQENNIVDWGEVNALG-----SLPNLK 399
+ LKL S +T+ L + +SL EL L N + D G + L L+
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG-MAELCPGLLHPSSRLR 259
Query: 400 YLNLASTNL 408
L + +
Sbjct: 260 TLWIWECGI 268
Score = 28.4 bits (64), Expect = 4.7
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 351 TCLKLPSNRITT-----LDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAS 405
L L ++ L + SL EL L N + D G + L L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG-ILQLVESVRQPGCLLEQ 431
Query: 406 TNLRNIKLNKEG 417
L +I ++E
Sbjct: 432 LVLYDIYWSEEM 443
Score = 28.4 bits (64), Expect = 5.0
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 372 SLEELYLQENNIVDWGEV---NALGSLPNLKYLNLASTNLRN 410
LE L L+ + + S +L+ L L S L +
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Score = 28.0 bits (63), Expect = 6.2
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 14/99 (14%)
Query: 22 IEDLDLSRNLL--ASWFAVGEITCQLKHLRHLNLRI-RLKSSSAPAHSYLAEVVFFVHLG 78
+E L L + + + I LR L L +L + L +
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM---AELCPGLLHPSSR 257
Query: 79 -RTLC-------DEDFVKEGSLLHYLPKLSSLRFTKNPI 109
RTL + +L L L N +
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
Score = 27.6 bits (62), Expect = 9.0
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 14/99 (14%)
Query: 22 IEDLDLSRNLL--ASWFAVGEITCQLKHLRHLNLRI-RLKSSSAPAHSYLAEVVFFVH-- 76
I+ L L L A + L L+ L+L L + L E +
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL---LCEGLLDPQCR 143
Query: 77 -----LGRT-LCDEDFVKEGSLLHYLPKLSSLRFTKNPI 109
L L S+L P L + N I
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 35.8 bits (83), Expect = 0.019
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 338 WADILKLLANFPVTCLKLPSNRIT------TLDSVPGMFSSLEELYLQENNIVDWGEV-- 389
WA + + +K+ N I L L+ L LQ+N G
Sbjct: 179 WAKTFQSHRL--LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236
Query: 390 -NALGSLPNLKYLNLASTNLRN 410
AL S PNL+ L L L
Sbjct: 237 AIALKSWPNLRELGLNDCLLSA 258
Score = 33.5 bits (77), Expect = 0.13
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 345 LANFPVTCLKLPSNRIT-----TLDSVPGMFSSLEELYLQENNIVDWGEV---NALGSLP 396
+A F + L + IT ++ +V S++E+ L N I + S
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 397 NLKYLNLASTNLRNIK 412
+L+ + +K
Sbjct: 61 DLEIAEFSDIFTGRVK 76
Score = 32.0 bits (73), Expect = 0.35
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 343 KLLANFPVTCLKLPSNRIT-----TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL-- 395
K P+ + NR+ L + + +N I G + L
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213
Query: 396 --PNLKYLNLASTNL 408
LK L+L
Sbjct: 214 YCQELKVLDLQDNTF 228
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 11/76 (14%)
Query: 339 ADILKLLANFPVTCLKLPSNRITT------LDSVPGMFSSLEELYLQENNIVDWGEV--- 389
D L N + L+L N I + L L L N + +V
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324
Query: 390 --NALGSLPNLKYLNL 403
+ + L
Sbjct: 325 IREVFSTRGRGELDEL 340
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 33.8 bits (78), Expect = 0.054
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
+ P+ T L L N + + S G+F L +L L+ N + E NA +++
Sbjct: 25 RDIPLHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQE 82
Query: 401 LNLASTNLRNI 411
L L ++ I
Sbjct: 83 LQLGENKIKEI 93
Score = 31.5 bits (72), Expect = 0.36
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
L +P + EL L +N + G LP+L L L N
Sbjct: 20 LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL-KRN 64
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 33.7 bits (77), Expect = 0.10
Identities = 11/69 (15%), Positives = 23/69 (33%)
Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLK 399
D+ L + V + P + + + ++ + L + I L L+
Sbjct: 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121
Query: 400 YLNLASTNL 408
L+L L
Sbjct: 122 NLSLEGLRL 130
Score = 31.0 bits (70), Expect = 0.65
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 341 ILKLLANFPVTCLKLPSNRITT--LDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398
+ + + F V + L ++ I L + S L+ L L+ + D VN L NL
Sbjct: 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNL 144
Query: 399 KYLNLASTNLRNI 411
LNL +
Sbjct: 145 VRLNL--SGCSGF 155
Score = 29.1 bits (65), Expect = 3.0
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 371 SSLEELYLQE-NNIVDWGEVNALGSLPNLKYLNLAS 405
+L L L + + + L L++L+L+
Sbjct: 222 PNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSR 256
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 33.7 bits (77), Expect = 0.13
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 329 LTLGNMGYIWADILKLLANFP-VTCLKLPSNRIT--TLDSVPGMFSSLEELYLQE-NNIV 384
+ G GY++ I + +++ + ++L +T L+ + F + + L L
Sbjct: 85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144
Query: 385 DWGEVNALGSLPNLKYLNLASTNLRNI 411
G + NLK L+L +++ ++
Sbjct: 145 TDGLAAIAATCRNLKELDLRESDVDDV 171
Score = 31.8 bits (72), Expect = 0.43
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 371 SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
SL +L +++ D + L ++ L ++S ++
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
Score = 29.5 bits (66), Expect = 2.3
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGR 79
P ++ L L+R + + + + L L +S L+ + R
Sbjct: 211 PNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268
Query: 80 TLCDEDFVKEGSLLHYLPKLSSLR 103
L L S L
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLT 292
Score = 28.3 bits (63), Expect = 5.2
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 339 ADILKLLANFPVTCLKLPS----NRIT--TLDSVPGMFSSLEELYLQENNIVDWGEVNAL 392
D+ L+ C +L L +V + S L L L + + V L
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310
Query: 393 GSLPNLKYLNL 403
P L+ L +
Sbjct: 311 CQCPKLQRLWV 321
Score = 27.6 bits (61), Expect = 9.8
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 8/120 (6%)
Query: 20 PFIEDLDLSRNLLA--SWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFF--- 74
+++LDL + + S + L LN+ S A L
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 75 VHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNG 134
+ L R + E +LL P+L L V S ++ L+ L+G
Sbjct: 216 LKLNRAVPLEKL---ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 32.7 bits (75), Expect = 0.15
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 343 KLLANFP------VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLP 396
K L P VT L L N+ T + + L + L N I + ++
Sbjct: 20 KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMT 78
Query: 397 NLKYLNLASTNLRNI 411
L L L+ LR I
Sbjct: 79 QLLTLILSYNRLRCI 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 33.1 bits (76), Expect = 0.16
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 339 ADILKLLANFP--VTCLKLPSNRITT---------LDSVPGMFSSLEELYLQENNIVDWG 387
A++ K LA+ P VT L L +N + S+P + + L L N +
Sbjct: 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP---NHVVSLNLCLNCLHGPS 241
Query: 388 EV---NALGSLPNLKYLNLASTNLRNI 411
SL +L+ + L ++N+
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNM 268
Score = 29.7 bits (67), Expect = 1.7
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 344 LLANFPVTCLKLPSNRITT------LDSVPGMFSSLEELYLQENNIVDWGEVNALGSL-- 395
VT L L N + + + + +S+ L L N++ + L +
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN-SDELVQILA 76
Query: 396 ---PNLKYLNLASTNL 408
N+ LNL+ L
Sbjct: 77 AIPANVTSLNLSGNFL 92
Score = 29.3 bits (66), Expect = 2.3
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 25/106 (23%)
Query: 325 HIHTLTLGNMGYIWADILKLLA------NFPVTCLKLPSNRIT---------TLDSVPGM 369
++ +L L + L F +T L L N + ++P
Sbjct: 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP-- 137
Query: 370 FSSLEELYLQENNIVDWGEVNALGSL---PN--LKYLNLASTNLRN 410
+S+ L L+ N++ + L + + LNL NL +
Sbjct: 138 -ASITSLNLRGNDLGIKS-SDELIQILAAIPANVNSLNLRGNNLAS 181
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 32.2 bits (72), Expect = 0.27
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 16/95 (16%)
Query: 329 LTLGNMGYIWADILKLLA------NFP-VTCLKLPSNRITT-----LDSVPGMFSSLEEL 376
L +G Y + + + FP + L + + LE +
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL-PQLETM 284
Query: 377 YLQENNIVDWG---EVNALGSLPNLKYLNLASTNL 408
+ + D G ++ + + +LK++N+ L
Sbjct: 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 28.4 bits (62), Expect = 5.0
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 367 PGMFSSLEELYLQENNIVDWGEVNALGS---LPNLKYLNLASTNLRN 410
F +L+ L + + + V LP L+ +++++ L +
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGVLTD 293
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 32.6 bits (74), Expect = 0.29
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 17/108 (15%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQEN 381
++ G++ K + L + +P +F + +L L
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303
Query: 382 NIVDWGEVNALGSLPNLKYLNLAS--------------TNLRNIKLNK 415
+ + PNL+ L + L+ +++ +
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351
Score = 31.5 bits (71), Expect = 0.60
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 371 SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
+L++L ++ + A+ LP+L+YL +
Sbjct: 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525
Score = 31.1 bits (70), Expect = 0.69
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFP---VTCLKLPS-NRITT--LDSVPGMFSSLEELYL 378
+ ++ M + L LA + LKL + TT L S+ ++ L +
Sbjct: 113 QLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171
Query: 379 QENNIVDWG--EVNALG-SLPNLKYLNLASTNLRNI 411
+E++ + ++ L +L+ LN T I
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI 207
Score = 30.3 bits (68), Expect = 1.6
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 352 CLKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L +T L + ++ + L D G + PNL+ L +
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500
Score = 29.1 bits (65), Expect = 3.1
Identities = 11/114 (9%), Positives = 31/114 (27%), Gaps = 9/114 (7%)
Query: 20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGR 79
+ + + + + L+ +L + + L LG
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE--KYMNLVFPRKLCRLGL 277
Query: 80 TLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN 133
+ + + L + ++ L + E+ I + L++L
Sbjct: 278 SYMGPNEMP--ILFPFAAQIRKLDLLYALLETEDHC-----TLIQKCPNLEVLE 324
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.38
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 44 QLKHLRHLNLRIRLK---SSSAPAHSYLAEV 71
LK L+ LK SAPA + A +
Sbjct: 21 ALKKLQA-----SLKLYADDSAPALAIKATM 46
Score = 30.3 bits (67), Expect = 0.63
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 16/38 (42%)
Query: 341 ILKLLANFPVTCLKL--PSNRITTLDSVPGMF--SSLE 374
+ KL A+ LKL DS P + +++E
Sbjct: 22 LKKLQAS-----LKLYAD-------DSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 1.2
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 9/27 (33%)
Query: 87 VK--EGSLLHYLPKLSSLRFTKNPILA 111
+K + SL Y S+ P LA
Sbjct: 22 LKKLQASLKLYADD-SA------PALA 41
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 30.7 bits (70), Expect = 0.52
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 28/126 (22%)
Query: 294 GFDQVHEEQNTNKLPI--PNDTSG--VMEQIFPQ-GHIHTLTLGNMGYIWADILKLLANF 348
G + V + +P PN T +++I + + L N+ I LK A
Sbjct: 1 GLNSVIKPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA 60
Query: 349 PVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL----PNLKYLNLA 404
L +N + +++ + D AL + LK LN+
Sbjct: 61 ------LKTN------------TYVKKFSIVGTRSNDPV-AFALAEMLKVNNTLKSLNVE 101
Query: 405 STNLRN 410
S +
Sbjct: 102 SNFISG 107
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 30.2 bits (68), Expect = 0.90
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 360 ITTLDSVPGMFSSLEELYLQEN-NIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
+ L + + S+ E+ + N+ D G + AL NLKYL L+ +L +K
Sbjct: 103 LERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFRNLKYLFLS--DLPGVK 153
Score = 27.5 bits (61), Expect = 6.5
Identities = 5/35 (14%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 373 LEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
++ + ++ I+ G + G L ++ + L +
Sbjct: 63 IQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCH 96
Score = 27.1 bits (60), Expect = 8.0
Identities = 4/33 (12%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 22 IEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR 54
I+ +D + + + + L+++ + L
Sbjct: 63 IQAIDATDSCIM--SIGFDHMEGLQYVEKIRLC 93
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 29.8 bits (67), Expect = 1.1
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 22/102 (21%)
Query: 326 IHTLTLGNMGYIWADILKLLA-----NFPVTCLKLPSNRITTLDSVPGMF-------SSL 373
+ + + NM + + ++ L + + L + I+ DS SL
Sbjct: 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS--DSEARGLIELIETSPSL 100
Query: 374 EELYLQENNIVDWGEVNALG-------SLPNLKYLNLASTNL 408
L ++ N + + L S+ K N + L
Sbjct: 101 RVLNVESNFLTPEL-LARLLRSTLVTQSIVEFKADNQRQSVL 141
>1xfj_A Conserved hypothetical protein; structural genomics, protein
structure initiative (PSI), HYP protein,
alpha-beta-BETA-alpha; 1.75A {Caulobacter vibrioides}
SCOP: d.194.1.2
Length = 261
Score = 29.6 bits (67), Expect = 1.8
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 10/49 (20%)
Query: 251 LNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVH 299
LN G + D V EN + +L Q+H
Sbjct: 39 LNVG------RGSQ----DEPADVEENRARIARWFGGGPEDLNVCYQIH 77
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 28.1 bits (63), Expect = 2.0
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 68 LAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKT 122
LA F + LC++ +E PK I+A ++ V +
Sbjct: 43 LANETFVAKDNKILCNKCTTRE-----DSPKCKG---CFKAIVAGDQNVEYKGTV 89
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics,
unknown function, PSI, protein structure initiative;
1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Length = 277
Score = 29.2 bits (66), Expect = 2.6
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 251 LNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHE 300
LN G LH D+ V N + + P V +QVH
Sbjct: 45 LNMG------LHVG----DDRTDVVNNRRRLAEWLAFPLERWVCCEQVHG 84
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 29.3 bits (66), Expect = 2.7
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 371 SSLEELYLQENNIVDWGEV---NALGSLPNLKYLNLASTNLRN 410
+ L L N + G L ++ +L+L T L +
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197
Score = 28.1 bits (63), Expect = 6.3
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 369 MFSSLEELYLQENNIVDWGEVNALGSL-----PNLKYLNLASTNLRN 410
+F +L LQ N++ L L + L L++ L
Sbjct: 124 VFLRARKLGLQLNSLGPEA-CKDLRDLLLHDQCQITTLRLSNNPLTA 169
Score = 27.8 bits (62), Expect = 6.6
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 371 SSLEELYLQENNIVDWGEVNALGSL----PNLKYLNLASTNL 408
+S+ L L + D G + L + L+ LN+A
Sbjct: 183 TSVTHLSLLHTGLGDEG-LELLAAQLDRNRQLQELNVAYNGA 223
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu
horikoshii OT3, PSI, protein structure initiative; 2.50A
{Pyrococcus horikoshii} SCOP: e.67.1.1
Length = 241
Score = 27.8 bits (61), Expect = 6.1
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 166 FLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSV 205
+ R+G++ + +D+I L + +EG + + + SV
Sbjct: 39 IGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSV 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,544,600
Number of extensions: 400912
Number of successful extensions: 2396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1554
Number of HSP's successfully gapped: 635
Length of query: 421
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 325
Effective length of database: 4,021,377
Effective search space: 1306947525
Effective search space used: 1306947525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)