RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9363
(421 letters)
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 83.4 bits (206), Expect = 3e-20
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 188 RVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMR 247
V ++ G IR++G G V G++ + E G DG+ G +YF F++
Sbjct: 25 EVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCAL-KKALFVK 83
Query: 248 RDKLNFGSSF 257
S F
Sbjct: 84 LKSCRPDSRF 93
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 82.2 bits (203), Expect = 6e-20
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 184 DIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
++G +V + +G +R+ G + G WYGI+ D + GKHDGS GV+YF T + G
Sbjct: 27 EVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELD-QPTGKHDGSVFGVRYF-TCAPRHG 84
Query: 244 SFMRRDKLNFGSSF 257
F ++ S
Sbjct: 85 VFAPASRIQRIGSG 98
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 79.4 bits (196), Expect = 3e-19
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV GT+R+ G+ E G W G++ D E GK+DGS GV+YF G
Sbjct: 13 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELD-EPEGKNDGSVGGVRYFICPP-KQGL 70
Query: 245 FMRRDKLNFGS 255
F K++
Sbjct: 71 FASVSKISKAV 81
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 71
Score = 78.2 bits (193), Expect = 6e-19
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
IG RV G +R++G + +G W G++ D E GK+DG+ G +YF G
Sbjct: 3 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYF-QCQPKYGL 60
Query: 245 FMRRDKL 251
F K+
Sbjct: 61 FAPVHKV 67
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 78.3 bits (193), Expect = 1e-18
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
G V G +RYVG + +G W G++ D GK+DGS G +YF + G
Sbjct: 20 EGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELD-LPSGKNDGSIGGKQYFRCNP-GYGL 77
Query: 245 FMRRDKLNFGS 255
+R ++ +
Sbjct: 78 LVRPSRVRRAT 88
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 77.0 bits (190), Expect = 2e-18
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + G I+++G + G W GI D E GK+DGS GV+YF G
Sbjct: 3 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYF-QCEPLKGI 60
Query: 245 FMRRDKL 251
F R KL
Sbjct: 61 FTRPSKL 67
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 77.6 bits (191), Expect = 2e-18
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
+G RV + GT+R+ G+ E G W GI+ D E GK++GS V+YF + G
Sbjct: 27 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELD-EPEGKNNGSVGRVQYF-KCAPKYGI 84
Query: 245 FMRRDKL 251
F K+
Sbjct: 85 FAPLSKI 91
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 77.6 bits (191), Expect = 3e-18
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 179 QVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTH 238
++ + IG RV G +R+ G +G W G++ D + G ++G+++G+ YF
Sbjct: 21 ELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELD-KPEGNNNGTYDGIAYF-EC 78
Query: 239 STTSGSFMRRDKLNFGSSFMEALHRKYVETDNE 271
G F K++ + YV+ + +
Sbjct: 79 KEKHGIFAPPQKISHIPENFD----DYVDINED 107
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 77.4 bits (190), Expect = 1e-17
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
IG RV G +R++G + +G W G++ D E GK+DG+ G +YF G
Sbjct: 34 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYFQCQP-KYGL 91
Query: 245 FMRRDKLNFGSS 256
F K+
Sbjct: 92 FAPVHKVTKIGF 103
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 91
Score = 74.8 bits (184), Expect = 2e-17
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 185 IGLRVC-DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
G +V S T+RYVG + G+W G++ +GK+DG+ +YF T G
Sbjct: 15 EGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELR-SAKGKNDGAVGDKRYF-TCKPNYG 72
Query: 244 SFMRRDKLNF 253
+R ++ +
Sbjct: 73 VLVRPSRVTY 82
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 74.5 bits (183), Expect = 3e-17
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 185 IGLRVC----DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHST 240
+G R RG + YVG+ + +GVW G+ +D E GK+DGS GV+Y +
Sbjct: 17 VGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYD-EPVGKNDGSVAGVRY-FDCDP 74
Query: 241 TSGSFMRRDKLNFG 254
G F+R + G
Sbjct: 75 KYGGFVRPVDVKVG 88
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 73.2 bits (180), Expect = 4e-17
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 185 IGLRV-CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
+G RV +GHRGT+ YVG+ G W G+ D E +GK+DG+ G KYF G
Sbjct: 4 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYFTCDE-GHG 61
Query: 244 SFMRRDKL 251
F+R+ ++
Sbjct: 62 IFVRQSQI 69
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 73.4 bits (180), Expect = 1e-16
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 159 DEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWD 218
+EK +A + R +V D LR RGT+ YVG + G W G+ +D
Sbjct: 25 EEKAQASAISVGSRC-----EVRAPDHSLR-------RGTVMYVGLTDFKPGYWVGVRYD 72
Query: 219 SETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS 256
E GK+DGS NG +YF + G+F++ + G S
Sbjct: 73 -EPLGKNDGSVNGKRYFECQA-KYGAFVKPSAVTVGDS 108
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 70.6 bits (173), Expect = 6e-16
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 185 IGLRVC---DSEGHRGTIRYVGSVEG--TQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
I RV GT+ + + G + G + G+D D G DG +GV+
Sbjct: 12 INSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMD-NPIGNWDGRFDGVQLCSFAC 70
Query: 240 TTSGSFMRRDKLNFGSSF 257
S + + + SS
Sbjct: 71 VESTILLHINDIIPESSG 88
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 69.9 bits (171), Expect = 1e-15
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 184 DIGLRV-----CDSEGHRGTIRYVGSVEGTQ---GVWYGIDWDSETR--GKHDGSHNGVK 233
D+G V E G +R+ G + + G+++G++ E R G DG + G +
Sbjct: 9 DVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQ 68
Query: 234 YFWTHSTTSGSFMRRDKLNFGSS 256
F G F+ DKL S
Sbjct: 69 LFQCDE-DCGVFVALDKLELIES 90
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 45.4 bits (106), Expect = 8e-06
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 348 FPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
+T L L N I+ + V + L+ L+ N + D V++L +L N+ +L+
Sbjct: 307 KNLTYLTLYFNNISDISPV-SSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQ 362
Query: 408 LRNI 411
+ ++
Sbjct: 363 ISDL 366
Score = 40.8 bits (94), Expect = 2e-04
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
L +N+++ + S+ +++ L N I D + L +L + L L
Sbjct: 334 LFFANNKVSDVSSL-ANLTNINWLSAGHNQISD---LTPLANLTRITQLGL 380
Score = 37.3 bits (85), Expect = 0.003
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402
VT L+ I ++D V ++L ++ N + D + L +L L +
Sbjct: 46 VTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTD---ITPLKNLTKLVDIL 94
Score = 36.1 bits (82), Expect = 0.006
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 320 IFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQ 379
+ P + LT +G + LA + S +L L L
Sbjct: 256 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315
Query: 380 ENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
NNI D ++ + SL L+ L A+ + ++
Sbjct: 316 FNNISD---ISPVSSLTKLQRLFFANNKVSDV 344
Score = 36.1 bits (82), Expect = 0.006
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+ L I ++ + L NL +N ++ L +I
Sbjct: 43 LDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDI 81
Score = 33.1 bits (74), Expect = 0.059
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 352 CLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L +N+I+ + + + ++L+EL L N + D G L SL NL L+LA+ + N+
Sbjct: 201 SLIATNNQISDITPLG-ILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNL 256
Score = 32.7 bits (73), Expect = 0.076
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
L L N++ + ++ + ++L +L L N I + L L L L L + + N
Sbjct: 222 DELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN 277
Query: 411 I 411
I
Sbjct: 278 I 278
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 44.0 bits (102), Expect = 2e-05
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 299 HEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSN 358
E + ++ P + N D+ L L + +N
Sbjct: 240 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL-----EELNVSNN 294
Query: 359 RITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
++ L P + LE L N++ + E NLK L++ LR
Sbjct: 295 KLIEL---PALPPRLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLREF 339
Score = 36.0 bits (81), Expect = 0.007
Identities = 8/49 (16%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLK 399
L N + + P + +L++L+++ N + ++ ++ S+ +L+
Sbjct: 307 ERLIASFNHLAEV---PELPQNLKQLHVEYNPLREFPDI--PESVEDLR 350
Score = 30.9 bits (68), Expect = 0.30
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
L+L + +++L P + LE L N++ + E +LK L + + NL+ +
Sbjct: 43 LELNNLGLSSL---PELPPHLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKAL 93
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 40.4 bits (93), Expect = 2e-04
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 357 SNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
N+I+ + + + +L E++L+ N I D V+ L + NL + L
Sbjct: 182 DNKISDISPLASL-PNLIEVHLKNNQISD---VSPLANTSNLFIVTL 224
Score = 31.5 bits (70), Expect = 0.16
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
S L L +N I D ++ L SLPNL ++L + + ++
Sbjct: 170 ANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISDV 210
Score = 29.2 bits (64), Expect = 0.83
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 353 LKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
+ + +T D+V + L + + + L NL L L + +
Sbjct: 24 IAAGKSNVT--DTVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQITD 77
Score = 27.7 bits (60), Expect = 2.3
Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
++ ++ ++N+ D L + L+ T + I+
Sbjct: 18 LANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIE 57
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 39.6 bits (91), Expect = 5e-04
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 346 ANFP--VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402
+ P L L +N+IT + D +L L L N I A L L+ L
Sbjct: 27 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLY 85
Query: 403 LASTNLRNI 411
L+ L+ +
Sbjct: 86 LSKNQLKEL 94
Score = 30.4 bits (67), Expect = 0.38
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402
+ +++ ITT+ G+ SL EL+L N I + +L L NL L
Sbjct: 153 SYIRIADTNITTIP--QGLPPSLTELHLDGNKITKV-DAASLKGLNNLAKLG 201
Score = 28.9 bits (63), Expect = 1.2
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQEN 381
++ L + + + + L+ L VPG + ++ +YL N
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252
Query: 382 NI-----VDWGEVNALGSLPNLKYLNLASTNLRNIKL 413
NI D+ + ++L S ++ ++
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 38.5 bits (88), Expect = 6e-04
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAS 405
+ L+ LYL +N+I D + AL L NL L L S
Sbjct: 175 AGLTKLQNLYLSKNHISD---LRALAGLKNLDVLELFS 209
Score = 32.3 bits (72), Expect = 0.080
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 371 SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
+S++++ ++I + LPN+ L L L
Sbjct: 46 NSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKL 80
Score = 27.3 bits (59), Expect = 3.4
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 369 MFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
+ S L +L ++ L L L+ L L+ ++ +++
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR 194
Score = 26.5 bits (57), Expect = 4.9
Identities = 6/43 (13%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNAL 392
+ + ++ I ++ + ++ +L+L N + D + L
Sbjct: 48 IDQIIANNSDIKSVQGI-QYLPNVTKLFLNGNKLTDIKPLANL 89
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 36.6 bits (84), Expect = 0.001
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 374 EELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
+EL L N + + L S P L LNL +L
Sbjct: 68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 27.0 bits (59), Expect = 2.3
Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 23/121 (19%)
Query: 25 LDLSRNLLASWFAVGEITCQLKHLRHLNL---RIRLKSSSAPAHSYLAEVVFFVHLGRTL 81
L L+ L + QL + HL+L R+R + A L + + +
Sbjct: 3 LHLAHKDLTVLCHLE----QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 82 CDEDF----------------VKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIAR 125
L P+L L N + EE + + +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118
Query: 126 L 126
+
Sbjct: 119 V 119
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 37.3 bits (84), Expect = 0.003
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 353 LKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGE---VNALGSLPNLKYLNLASTN 407
L + ++ + + + + L + + + +AL P L LNL S
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 408 LRNI 411
L ++
Sbjct: 67 LGDV 70
Score = 37.3 bits (84), Expect = 0.004
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 338 WADILKLLANFPVTCLKLPSNRIT-----TLDSVPGMFSSLEELYLQENNIVDWGEVNAL 392
WA++L LL ++L +T + S + +L EL L+ N + D G V+ +
Sbjct: 19 WAELLPLLQQ--CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG-VHCV 75
Query: 393 GSL-----PNLKYLNLASTN 407
++ L+L +
Sbjct: 76 LQGLQTPSCKIQKLSLQNCC 95
Score = 35.7 bits (80), Expect = 0.009
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
++ L +Q + D L L + + L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL 39
Score = 35.0 bits (78), Expect = 0.015
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 369 MFSSLEELYLQENNIVDWGEV---NALGSLPNLKYLNLASTNLRN 410
S L L+L + ++ D L + +L+ L+L++ L +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411
Score = 33.8 bits (75), Expect = 0.033
Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITT-----LDSVPGMFS 371
+ + I L + G + L L ++ L +
Sbjct: 338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 397
Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEG 417
SL EL L N + D G + L L L +I ++E
Sbjct: 398 SLRELDLSNNCLGDAG-ILQLVESVRQPGCLLEQLVLYDIYWSEEM 442
Score = 28.8 bits (62), Expect = 1.4
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 24/88 (27%)
Query: 22 IEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTL 81
I+ LD+ L S E+ L+ + + L L
Sbjct: 4 IQSLDIQCEEL-SDARWAELLPLLQQCQVVRLD-----------------------DCGL 39
Query: 82 CDEDFVKEGSLLHYLPKLSSLRFTKNPI 109
+ S L P L+ L N +
Sbjct: 40 TEARCKDISSALRVNPALAELNLRSNEL 67
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 36.6 bits (83), Expect = 0.004
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
L ++P + L+L EN + + L L LNL
Sbjct: 22 LTALPPDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAE 66
Score = 27.0 bits (58), Expect = 4.0
Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 1/94 (1%)
Query: 289 FLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANF 348
L + N+ + + + LL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 349 P-VTCLKLPSNRITTLDSVPGMFSSLEELYLQEN 381
+ L L N + T+ L +L N
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 35.9 bits (81), Expect = 0.006
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 355 LPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
L +NRI TL L L + NN+ GE+ G+L A+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC--GEIPQGGNLQRFDVSAYANNKC 303
Score = 28.6 bits (62), Expect = 1.4
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 369 MFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
+ +L L L+ N I G + L L L LN++ NL
Sbjct: 242 LSKNLNGLDLRNNRIY--GTLPQGLTQLKFLHSLNVSFNNL 280
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.9 bits (81), Expect = 0.007
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 327 HTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW 386
TL L + D+ L + V + P + + + ++ + L + I
Sbjct: 3 QTLDLTGKN-LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 387 GEVNALGSLPNLKYLNLASTNL 408
L L+ L+L L
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRL 83
Score = 31.2 bits (69), Expect = 0.21
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
+ L+ L L + + LG +P LK L +
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 35.4 bits (80), Expect = 0.007
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEEL 376
+ + + L +DI L + L SN++T L + + ++LE L
Sbjct: 119 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANL-TTLERL 177
Query: 377 YLQENNIVDWGEVNALGSLPNLKYL 401
+ N + D ++ L L NL+ L
Sbjct: 178 DISSNKVSD---ISVLAKLTNLESL 199
Score = 27.7 bits (60), Expect = 2.2
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402
L +T S + + L I ++ + L NL +N
Sbjct: 23 TVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKS---IDGVEYLNNLTQIN 68
Score = 26.9 bits (58), Expect = 3.8
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
+ + L + N+ D + L + L +++I
Sbjct: 17 LAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSID 56
Score = 26.9 bits (58), Expect = 4.3
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 388 EVNALGSLPNLKYLNLASTNLRNI 411
++ L +L L+ L+++S + +I
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDI 187
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 34.1 bits (77), Expect = 0.012
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL 395
L L +I ++++ + + +N I L L
Sbjct: 23 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRL 65
Score = 33.8 bits (76), Expect = 0.017
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 9/128 (7%)
Query: 22 IEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTL 81
+ +D S N + + L+ L+ L + + + L
Sbjct: 43 FDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL---- 94
Query: 82 CDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQE 141
+ + E L L L SL + R I ++ +++L+ ++ +E
Sbjct: 95 -TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 153
Query: 142 RQGSEYDY 149
RQ +E +
Sbjct: 154 RQEAEKMF 161
Score = 29.1 bits (64), Expect = 0.55
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 354 KLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
KL + I EL L+ I N +L ++ + +R +
Sbjct: 2 KLTAELIEQAAQYTNA-VRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL 56
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.9 bits (78), Expect = 0.014
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
S L + I L +L L+ + NL+ +
Sbjct: 200 ASGPVILDISRTRIHSLPS-YGLENLKKLRARST--YNLKKL 238
Score = 28.7 bits (62), Expect = 1.1
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
+ +P + + EL + + A +L+ + +
Sbjct: 20 VTEIPSDLPRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEI 60
Score = 27.2 bits (58), Expect = 3.1
Identities = 2/22 (9%), Positives = 9/22 (40%)
Query: 390 NALGSLPNLKYLNLASTNLRNI 411
+ L+++ T + ++
Sbjct: 195 DVFHGASGPVILDISRTRIHSL 216
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 33.6 bits (76), Expect = 0.017
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 3 SRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSA 62
+R S+ T IE+ +P + L+LS N L + I + +L+ LNL S
Sbjct: 48 NRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER 107
Query: 63 PAHSYLAEVVFFVHLGR----TLCDEDFVKEGSLLHYLPKLSSL 102
+ + L + ++ PKL L
Sbjct: 108 ELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151
Score = 29.0 bits (64), Expect = 0.73
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 339 ADILKLLANFP-VTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGS 394
A + + N P + L L +NR+ LD + + +L+ L L N + E+
Sbjct: 55 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIK 113
Query: 395 LPNLKYLNLASTNLRNIKLNKEGHYRP 421
L+ L L +L + ++ Y
Sbjct: 114 GLKLEELWLDGNSLSDTFRDQS-TYIS 139
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 33.7 bits (75), Expect = 0.033
Identities = 37/335 (11%), Positives = 86/335 (25%), Gaps = 28/335 (8%)
Query: 81 LCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQ 140
+ ED ++L + + + N I E + IA L++ S I
Sbjct: 15 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTG 72
Query: 141 ERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIR 200
+ + ++ L + ++ G + + D + +
Sbjct: 73 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY----- 127
Query: 201 YVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEA 260
+ K R++L GS A
Sbjct: 128 --------LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179
Query: 261 LHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQI 320
+ + + + +N + + L ++ + +S + +
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239
Query: 321 FPQGHIHTLTLGNMG------YIWADILKLLANFPVTCLKLPSNRITT------LDSVPG 368
++ L L + D L N + L+L N I +
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299
Query: 369 MFSSLEELYLQENNIVDWGE-VNALGSLPNLKYLN 402
L L L N + + V+ + + + +
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334
Score = 33.7 bits (75), Expect = 0.034
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV---NALGSLPNLKYLNLASTNLR 409
+ + ++ +V S++E+ L N I + S +L+ +
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 410 NIK 412
+K
Sbjct: 73 RVK 75
Score = 32.5 bits (72), Expect = 0.080
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 370 FSSLEELYLQENNIVDWGEVN----ALGSLPNLKYLNLASTNL 408
L+ L LQ N I +P+L +L L
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 32.4 bits (72), Expect = 0.065
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 360 ITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402
I +D+ + + L L NNI +++L + NL+ L+
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIEK---ISSLSGMENLRILS 76
Score = 28.9 bits (63), Expect = 0.90
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 97 PKLSSLRFTKNPILAEERVVSS----REKTIARLGGLKLLNGSAIERQERQGSE 146
KL L NP+ + + ++ R + + RL LK L+G ++ ER+ +
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQAN 193
Score = 27.7 bits (60), Expect = 2.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 390 NALGSLPNLKYLNLASTNLRNI 411
L +L K+L L++ N+ I
Sbjct: 42 ATLSTLKACKHLALSTNNIEKI 63
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 132
Score = 28.6 bits (63), Expect = 0.64
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 325 HIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYL-QENNI 383
I I A+++ + + L+ P R+ D F+ E ++L ++
Sbjct: 64 AIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPD-TVYPFAQAESVWLPNFKDV 122
Query: 384 VD 385
++
Sbjct: 123 IE 124
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 29.4 bits (64), Expect = 0.68
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400
L +VP G+ ++ + ++L N I + + NL
Sbjct: 23 LQAVPVGIPAASQRIFLHGNRISHV-PAASFRACRNLTI 60
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 26.8 bits (58), Expect = 4.2
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 331 LGNMGYIWADILKLLANFPVTCLK-LPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV 389
+G GY ++++LL N P + L S S+LE L E + +
Sbjct: 7 IGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKN 66
Query: 390 NALGSLPN 397
+
Sbjct: 67 CDVLFTAL 74
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH)
{Lyme disease spirochete (Borrelia burgdorferi) [TaxId:
139]}
Length = 388
Score = 27.0 bits (59), Expect = 4.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 160 EKRRAEFLEANPRVG-DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGT 208
+ A R YFQ+ ++ V EG G + Y G ++
Sbjct: 306 SYVGMGSISAMKRGSKSRYFQLENNEPKKLV--PEGIEGMVPYSGKLKDI 353
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 330
Score = 27.0 bits (59), Expect = 5.1
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 148 DYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEG 207
+ I G + + D Y Q E+ EG G + Y G+V+
Sbjct: 242 ETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFV-----PEGIEGMVPYKGTVKD 296
Query: 208 T 208
Sbjct: 297 V 297
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 25.5 bits (54), Expect = 8.4
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
+ L+ + +L ELY++ + E+ L L L+ L +
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63
>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
(Rhodosporidium toruloides) [TaxId: 5286]}
Length = 678
Score = 26.1 bits (57), Expect = 9.8
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 5/113 (4%)
Query: 43 CQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVK--EGSLLHYLPKLS 100
Q LR + K PA L + F + + ++ V+ +L L + +
Sbjct: 494 LQAIDLRAIEF--EFKKQFGPAIVSLIDQHFGSAMTGSNLRDELVEKVNKTLAKRLEQTN 551
Query: 101 SLRFTKNPI-LAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKE 152
S + E + L +N + E S ++E
Sbjct: 552 SYDLVPRWHDAFSFAAGTVVEVLSSTSLSLAAVNAWKVAAAESAISLTRQVRE 604
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,592,747
Number of extensions: 75581
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 86
Length of query: 421
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,199,356
Effective search space: 399385548
Effective search space used: 399385548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)