BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9364
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 117/155 (75%), Gaps = 2/155 (1%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
V GMVK GSYKVTYHPDGPE G ++DFTPPFRR++M LE ALG+KLP F+T
Sbjct: 290 VSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFET 348
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
E K L D+CV VECPPPRT+ARLLDKLVGEFLE TCINPTFICDHPQ+MSPLAKWH
Sbjct: 349 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWH 408
Query: 123 RDHPGLTERFELFVMKKEEVLLFPAMR-PERRRTL 156
R GLTERFELFVMKKE + + P R+R L
Sbjct: 409 RSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 443
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 99 EETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKK---EEVLLFPAMRPERRR 154
E I+ F + P A W +R +F+ +EVLLFPAM+PE ++
Sbjct: 457 EAMFIDENFCTALEYGLPPTAGWGMG----IDRVAMFLTDSNNIKEVLLFPAMKPEDKK 511
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 214 bits (545), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 117/155 (75%), Gaps = 2/155 (1%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
V GMVK GSYKVTYHPDGPE G ++DFTPPFRR++M LE ALG+KLP F+T
Sbjct: 290 VSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFET 348
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
E K L D+CV VECPPPRT+ARLLDKLVGEFLE TCINPTFICDHPQ+MSPLAKWH
Sbjct: 349 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWH 408
Query: 123 RDHPGLTERFELFVMKKEEVLLFPAMR-PERRRTL 156
R GLTERFELFVMKKE + + P R+R L
Sbjct: 409 RSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 443
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 99 EETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKK---EEVLLFPAMRPERRR 154
E I+ F + P A W +R +F+ +EVLLFPAM+PE ++
Sbjct: 457 EAMFIDENFCTALEYGLPPTAGWGMG----IDRVAMFLTDSNNIKEVLLFPAMKPEDKK 511
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
+D TP +RRLHM A++ +GV +F +++ +L +H VE P T ++
Sbjct: 308 VDLTPEWRRLHMVDAIKEYVGV------DFWRQMSDEEARELAKEHGVEVAPHMTFGHIV 361
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAM 148
++ + +E+ I PTFI HP +SPLAK + D P T+RFELF++ +E F +
Sbjct: 362 NEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRFTDRFELFIVGREHANAFTEL 419
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 29 VEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRT--S 86
V +DF PF +L M A +K P E D + + F S + + ++
Sbjct: 315 VTLDFGKPFEKLTMREA------IKKYRP-ETDMADLDNFDSAKAIAESIGIHVEKSWGL 367
Query: 87 ARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
R++ ++ E E I PTFI ++P +SPLA+ + +P +T+RFE F+ +E
Sbjct: 368 GRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGRE 421
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 6 MVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 65
+ + G+ KVTY G V DF PF +L M A +K P E D +
Sbjct: 300 LAQEVLGTTKVTY-------GEHV-FDFGKPFEKLTMREA------IKKYRP-ETDMADL 344
Query: 66 NKFLSDLCVKHEVECPPPRT--SARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHR 123
+ F + + + ++ R++ ++ E E I PTFI ++P +SPLA+ +
Sbjct: 345 DNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRND 404
Query: 124 DHPGLTERFELFVMKKE 140
+P +T+RFE F+ +E
Sbjct: 405 VNPEITDRFEFFIGGRE 421
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 43.9 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
E+D PF RL + A++ P+ T+ + + FL + V+ P
Sbjct: 337 ELDLAQPFHRLTITQAIQKYA----PSYTDGQLSD-DAFLRSELKRLGVDVTQPAFLNAG 391
Query: 90 LDKLVGEFLEETC----INPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
+ L EET PTFI D+P +SPLA+ G+TERFELF+ +E
Sbjct: 392 IGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESDTVAGITERFELFITGRE 446
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
E +F P + R+ + + + G++L T + ++ L VK P P +
Sbjct: 371 EHNFIPDYGRITAYRS-ASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISR 429
Query: 90 LDKLVGEF-LEETCINPTF---ICDHPQ 113
+D+ + EF + N TF I HP+
Sbjct: 430 MDRALREFRIRGVATNLTFLEAIIGHPK 457
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
E +F P + R+ + + + G++L T + ++ L VK P P +
Sbjct: 371 EHNFIPDYGRITAYRS-ASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISR 429
Query: 90 LDKLVGEF-LEETCINPTF---ICDHPQ 113
+D+ + EF + N TF I HP+
Sbjct: 430 MDRALREFRIRGVATNLTFLEAIIGHPK 457
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 18/96 (18%)
Query: 51 GVKLPNPTEFDTPEANK-FLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINP---- 105
G+K P FD ++ K L DL K P S +++G L+ + NP
Sbjct: 68 GLKYPGIMSFDPDKSGKILLMDLNEKE------PAVSEL---EIIGNTLDISSFNPHGIS 118
Query: 106 TFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEE 141
TFI D V + +HPG + E+F ++EE
Sbjct: 119 TFIDDDNTVYLLVV----NHPGSSSTVEVFKFQEEE 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,416,570
Number of Sequences: 62578
Number of extensions: 230777
Number of successful extensions: 476
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 14
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)