BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9364
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37879|SYK_CRIGR Lysine--tRNA ligase OS=Cricetulus griseus GN=KARS PE=1 SV=1
Length = 597
Score = 219 bits (558), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 118/155 (76%), Gaps = 2/155 (1%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ GMVKS GSYK+TYHPDGPE G EIDFTPPFRR+ M LE ALGVKLP + F+T
Sbjct: 358 LSGMVKSITGSYKITYHPDGPE-GEAYEIDFTPPFRRISMVEELEKALGVKLPETSLFET 416
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
E K L D+CV VECPPPRT+ARLLDKLVGEFLE TCINPTFICDHPQ+MSPLAKWH
Sbjct: 417 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWH 476
Query: 123 RDHPGLTERFELFVMKKEEVLLFPAMR-PERRRTL 156
R GLTERFELFVMKKE + + P R+R L
Sbjct: 477 RSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 511
>sp|Q99MN1|SYK_MOUSE Lysine--tRNA ligase OS=Mus musculus GN=Kars PE=1 SV=1
Length = 595
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 118/155 (76%), Gaps = 2/155 (1%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ GMVKS GSYK+TYHPDGPE G E+DFTPPFRR+ M LE ALGVKLP + F+T
Sbjct: 356 LSGMVKSITGSYKITYHPDGPE-GQAYEVDFTPPFRRISMVEELEKALGVKLPETSLFET 414
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
E K L D+CV VECPPPRT+ARLLDKLVGEFLE TCI+PTFICDHPQ+MSPLAKWH
Sbjct: 415 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCISPTFICDHPQIMSPLAKWH 474
Query: 123 RDHPGLTERFELFVMKKEEVLLFPAMR-PERRRTL 156
R GLTERFELFVMKKE + + P R+R L
Sbjct: 475 RSKEGLTERFELFVMKKEICNAYTELNDPVRQRQL 509
>sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3
Length = 597
Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 117/155 (75%), Gaps = 2/155 (1%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
V GMVK GSYKVTYHPDGPE G ++DFTPPFRR++M LE ALG+KLP F+T
Sbjct: 358 VSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFET 416
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
E K L D+CV VECPPPRT+ARLLDKLVGEFLE TCINPTFICDHPQ+MSPLAKWH
Sbjct: 417 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWH 476
Query: 123 RDHPGLTERFELFVMKKEEVLLFPAMR-PERRRTL 156
R GLTERFELFVMKKE + + P R+R L
Sbjct: 477 RSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 511
>sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os03g0586800
PE=2 SV=1
Length = 602
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 103/138 (74%), Gaps = 3/138 (2%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ GMVK G YK+ YH +G E P+EIDFTPPFR++ M LEA KL P + +
Sbjct: 385 LSGMVKELTGGYKIKYHANGVEK-PPIEIDFTPPFRKIDMIEELEAM--AKLNIPKDLSS 441
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
EANK+L D C K++V+CPPP+T+ RLLDKLVG FLEETC+NPTFI +HP++MSPLAKWH
Sbjct: 442 DEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWH 501
Query: 123 RDHPGLTERFELFVMKKE 140
R PGLTERFELFV K E
Sbjct: 502 RSRPGLTERFELFVNKHE 519
>sp|Q9UUE6|SYKC_SCHPO Lysine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=krs1 PE=3 SV=1
Length = 591
Score = 172 bits (437), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ G+VK GSYKV YHP+GPE G E+DF+ P+RR++M LE L K P + T
Sbjct: 362 LSGLVKDLTGSYKVPYHPEGPE-GPKWELDFSRPWRRINMIEYLEEKLNTKFPPGDQLHT 420
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
PEAN FL DLC KH VEC PP+T +RLLDKLVGEF+E CINPTFI HPQ+MSPLAK+H
Sbjct: 421 PEANAFLRDLCAKHGVECAPPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAKYH 480
Query: 123 RDHPGLTERFELFVMKKE 140
R GL ERFE FV KE
Sbjct: 481 RSDAGLCERFEAFVATKE 498
>sp|Q9ZPI1|SYK_ARATH Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1
Length = 626
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 100/138 (72%), Gaps = 3/138 (2%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ GMVK G YK+ Y+ +G + P+EIDFTPPFRR+ M LE KL P + +
Sbjct: 394 LSGMVKELTGGYKIKYNANGYDK-DPIEIDFTPPFRRIEMIGELEKV--AKLNIPKDLAS 450
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
EANK+L D C + +V+CPPP+T+ARLLDKLVGEFLE TC+NPTFI + P++MSPLAKWH
Sbjct: 451 EEANKYLIDACARFDVKCPPPQTTARLLDKLVGEFLEPTCVNPTFIINQPEIMSPLAKWH 510
Query: 123 RDHPGLTERFELFVMKKE 140
R GLTERFELF+ K E
Sbjct: 511 RSKSGLTERFELFINKHE 528
>sp|Q22099|SYK_CAEEL Lysine--tRNA ligase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1
Length = 572
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 77/138 (55%), Positives = 98/138 (71%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ MV S G+YK+ YHP+GP + E+DFTPPF+R+HM+ L LG LP+P+ T
Sbjct: 337 LSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYDGLAEKLGATLPDPSTLHT 396
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
EA + LC + V+C PRT+ARLLDKLVGE+LE T I+PTF+ HPQ+MSPLAKWH
Sbjct: 397 EEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLESTFISPTFLIGHPQIMSPLAKWH 456
Query: 123 RDHPGLTERFELFVMKKE 140
R PGLTERFELF + +E
Sbjct: 457 RSIPGLTERFELFAVTRE 474
>sp|Q43776|SYK_SOLLC Lysine--tRNA ligase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1
Length = 588
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 97/138 (70%), Gaps = 3/138 (2%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ GMVK GSYK+ YH +G ++ P+EIDFTPPFR++ M LE + +P + +
Sbjct: 372 LSGMVKDLTGSYKIRYHANGLDN-EPIEIDFTPPFRKIDMLSELEKVANISIPR--DLSS 428
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
ANK L D+C K +V+CPPP T+ RLLDKLVG F+E CINPTFI +HP++MSPLAK
Sbjct: 429 ESANKHLVDVCEKFDVKCPPPHTTTRLLDKLVGHFIEVNCINPTFIINHPEIMSPLAKSR 488
Query: 123 RDHPGLTERFELFVMKKE 140
R PGLTERF LFV ++E
Sbjct: 489 RSEPGLTERFNLFVNRRE 506
>sp|P15180|SYKC_YEAST Lysine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=KRS1 PE=1 SV=2
Length = 591
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Query: 6 MVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 65
MVK GSY + YHPD + +E++F+ P++R++M LE VK P+ + T E
Sbjct: 364 MVKEITGSYIIKYHPDPADPAKELELNFSRPWKRINMIEELEKVFNVKFPSGDQLHTAET 423
Query: 66 NKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDH 125
+FL + V +++ECPPP T+AR+LDKLVGE LE+TCINPTFI HPQ+MSPLAK+ RD
Sbjct: 424 GEFLKKILVDNKLECPPPLTNARMLDKLVGE-LEDTCINPTFIFGHPQMMSPLAKYSRDQ 482
Query: 126 PGLTERFELFVMKKE 140
PGL ERFE+FV KE
Sbjct: 483 PGLCERFEVFVATKE 497
>sp|C4V8R9|SYKC_NOSCE Probable lysine--tRNA ligase, cytoplasmic OS=Nosema ceranae (strain
BRL01) GN=NCER_100909 PE=3 SV=1
Length = 514
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/139 (46%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESG-SPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFD 61
+ GM K HGS K+ Y P+ E PVEI+F PF R HM L +G+KL + +
Sbjct: 292 LNGMCKYLHGSEKIVYAPNKREKEVKPVEINFARPFARFHMLEELSKVVGIKL-DGLNIN 350
Query: 62 TPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKW 121
+ E L + C K+E++ P+T R+LDKLVG F+E CINP+FI +P V SPLAK
Sbjct: 351 SDETLDLLIETCDKYEIKVEQPKTLTRVLDKLVGHFIEPKCINPSFIIGYPLVTSPLAKN 410
Query: 122 HRDHPGLTERFELFVMKKE 140
HR G+ ERFELF+ KE
Sbjct: 411 HRSEAGMVERFELFINGKE 429
>sp|Q8SS56|SYKC_ENCCU Probable lysine--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU04_0580 PE=3 SV=1
Length = 440
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGS-PVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFD 61
+ GMV++ G+ + Y P E + VE+ F PFR + + L A LG+ L T D
Sbjct: 221 ISGMVENMFGTDTIVYSPKKREERTESVELSFKRPFRVISILEELNARLGLDLSGET-LD 279
Query: 62 TPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKW 121
E + L C K + PRT +R+LDKL+G +E C+NPTF+ DHP MSPLAK
Sbjct: 280 REETLEKLLSACDKEGLSVEKPRTLSRVLDKLIGHVIEPQCVNPTFVKDHPIAMSPLAKN 339
Query: 122 HRDHPGLTERFELFVMKKE 140
HR GLTERFELF+ KE
Sbjct: 340 HRSKAGLTERFELFINCKE 358
>sp|A9CS74|SYKC_ENTBH Probable lysine--tRNA ligase, cytoplasmic OS=Enterocytozoon
bieneusi (strain H348) GN=EBI_25548 PE=3 SV=1
Length = 518
Score = 96.3 bits (238), Expect = 6e-20, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEI--DFTPPFRRLHMFPALEAALGVKLPNPTEF 60
+ G+VK GS K Y P E+ +++ DF+ PF+R+ + L +L ++L
Sbjct: 296 LSGLVKLIKGSSKFIYQPCKRETIDEIKVPLDFSTPFKRIDILEELNKSLNIELTG-ENI 354
Query: 61 DTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAK 120
+ PE + L + + P+T R+LD +GE++E CINPTF+ P MSPLAK
Sbjct: 355 EKPETLELLIKKAEELNIIVNNPKTLNRMLDAFIGEYIEPQCINPTFVTGFPICMSPLAK 414
Query: 121 WHRDHPGLTERFELFVMKKEEV 142
HR G+TERFE+F KE V
Sbjct: 415 DHRSKAGITERFEMFCNGKELV 436
>sp|B1LAX6|SYK_THESQ Lysine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=lysS PE=3
SV=1
Length = 502
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 19/136 (13%)
Query: 6 MVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVK-LPNPTEFDTPE 64
+VK T G+ K++Y EIDFTPP++R+ M L+ LGV L +P E +
Sbjct: 288 VVKRTCGTLKISYQGK--------EIDFTPPWKRVRMRDFLKEKLGVDILEDPDEVLLKK 339
Query: 65 ANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRD 124
++ +L +K+ A L+DKL + +EE +NPTFI DHP V+SPLAK HR+
Sbjct: 340 LEEYGVELEIKN---------RAHLIDKL-RDLVEEELVNPTFIIDHPVVISPLAKRHRE 389
Query: 125 HPGLTERFELFVMKKE 140
P LTERFEL + +E
Sbjct: 390 DPRLTERFELIIFGRE 405
>sp|A5ILE6|SYK_THEP1 Lysine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=lysS PE=3 SV=1
Length = 502
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 19/136 (13%)
Query: 6 MVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVK-LPNPTEFDTPE 64
+VK T G+ K++Y EIDFTPP++R+ M L+ LGV L +P E +
Sbjct: 288 VVKRTCGTLKISYQGK--------EIDFTPPWKRVRMRDFLKEKLGVDILEDPDEVLLKK 339
Query: 65 ANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRD 124
++ +L +K+ A L+DKL + +EE +NPTFI DHP V+SPLAK HR+
Sbjct: 340 LEEYGVELEIKN---------RAHLIDKL-RDLVEEELVNPTFIIDHPVVISPLAKRHRE 389
Query: 125 HPGLTERFELFVMKKE 140
P LTERFEL + +E
Sbjct: 390 DPRLTERFELIIFGRE 405
>sp|Q9X231|SYK_THEMA Lysine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=lysS PE=3 SV=1
Length = 502
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 77/136 (56%), Gaps = 19/136 (13%)
Query: 6 MVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVK-LPNPTEFDTPE 64
+VK T G+ K++Y EIDFTPP++R+ M L+ LGV L +P E
Sbjct: 288 VVKRTCGTLKISYQGK--------EIDFTPPWKRVRMRDFLKEKLGVDILEDPDEV---- 335
Query: 65 ANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRD 124
L +H VE + A L+DKL + +EE +NPTFI DHP V+SPLAK HR+
Sbjct: 336 ----LLKKLEEHGVELEI-KNRAHLIDKL-RDLVEEELVNPTFIIDHPVVISPLAKRHRE 389
Query: 125 HPGLTERFELFVMKKE 140
P LTERFEL + +E
Sbjct: 390 DPRLTERFELIIFGRE 405
>sp|B3QMN9|SYK_CHLP8 Lysine--tRNA ligase OS=Chlorobaculum parvum (strain NCIB 8327)
GN=lysS PE=3 SV=1
Length = 511
Score = 87.8 bits (216), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 7/111 (6%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
EI+ PPFRRL + +++ G+++ + +E L D+ +E P +S ++
Sbjct: 326 EINLKPPFRRLTIADSIKEYTGMEIRDKSEAQ-------LRDIAKDLGLELDPKISSGKI 378
Query: 90 LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
+D++ GEF+E I PTFI D+P+ MSPLAK HR PGL ERFEL V KE
Sbjct: 379 IDEIFGEFVEPKLIQPTFITDYPEEMSPLAKKHRSEPGLVERFELIVGGKE 429
>sp|Q8KCM7|SYK_CHLTE Lysine--tRNA ligase OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=lysS PE=3 SV=1
Length = 511
Score = 86.7 bits (213), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
EI+ PPFRRL + ++ G+++ +E L D+ +E P +S ++
Sbjct: 326 EINLKPPFRRLTIADSIREYTGMEIRGKSEAQ-------LRDIAKDLGLELDPKISSGKI 378
Query: 90 LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
+D++ GEF+E I PTFI D+P+ MSPLAK HR PGL ERFEL V KE
Sbjct: 379 IDEIFGEFVEPKLIQPTFITDYPEEMSPLAKKHRSEPGLVERFELIVGGKE 429
>sp|A6L8C6|SYK_PARD8 Lysine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC 8503
/ DSM 20701 / NCTC 11152) GN=lysS PE=3 SV=1
Length = 576
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
I F PFRRL + A++ G L TE + + +C + ++E +L+
Sbjct: 317 ISFKAPFRRLPILEAIKEKTGYDLEGKTEDE-------IRAICKELKMEIDDTMGKGKLI 369
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
D++ GEF E T I PTFI D+P MSPL K HR PGLTERFEL V KE
Sbjct: 370 DEIFGEFCEGTFIQPTFIIDYPVEMSPLTKMHRSKPGLTERFELMVNGKE 419
>sp|Q3Z8X9|SYK_DEHE1 Lysine--tRNA ligase OS=Dehalococcoides ethenogenes (strain 195)
GN=lysS PE=3 SV=1
Length = 498
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 14/131 (10%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
V +VK G Y V + +DFTPP+ RL M A++ G+ FD
Sbjct: 285 VSSVVKEISGGYTVPF--------GDTTLDFTPPWPRLSMRDAVKQYAGIDF-----FDF 331
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
P +++ ++ +++ P + +L+D+LVGEF+E I PTF+ DHP MSPLAK
Sbjct: 332 PTKEALAAEM-IRRKLKVDPAKDWGKLVDELVGEFVEPRLIQPTFLTDHPVAMSPLAKQK 390
Query: 123 RDHPGLTERFE 133
+ P LTERFE
Sbjct: 391 PEDPRLTERFE 401
>sp|A6L7P5|SYK_BACV8 Lysine--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM
1447 / NCTC 11154) GN=lysS PE=3 SV=1
Length = 576
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
IDF P++R+ M +++ G L E + + ++C K +E +L+
Sbjct: 317 IDFKAPYKRVTMLDSIKEHTGYDLTGMNE-------EQIREVCQKLNMEIDDTMGKGKLI 369
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
D++ GEF E T I PTFI D+P+ MSPL K HR +P LTERFEL V KE
Sbjct: 370 DEIFGEFCEGTYIQPTFITDYPKEMSPLTKIHRSNPDLTERFELMVNGKE 419
>sp|Q5L9E5|SYK_BACFN Lysine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=lysS PE=3 SV=1
Length = 575
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
I+F P++R+ M A++ G L E + + ++C K +E +L+
Sbjct: 317 INFKAPYKRVTMLGAIKEHTGYDLTGMNE-------EQIREVCKKLNMEIDDTMGKGKLI 369
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
D++ GEF E T I PTFI D+P MSPL K HRD+P LTERFEL V KE
Sbjct: 370 DEIFGEFCEGTYIQPTFITDYPIEMSPLTKKHRDNPELTERFELMVNGKE 419
>sp|Q64PM9|SYK_BACFR Lysine--tRNA ligase OS=Bacteroides fragilis (strain YCH46) GN=lysS
PE=3 SV=1
Length = 575
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
I+F P++R+ M A++ G L E + + ++C K +E +L+
Sbjct: 317 INFKAPYKRVTMLGAIKEHTGYDLTGMNE-------EQIREVCKKLNMEIDDTMGKGKLI 369
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
D++ GEF E T I PTFI D+P MSPL K HRD+P LTERFEL V KE
Sbjct: 370 DEIFGEFCEGTYIQPTFITDYPIEMSPLTKKHRDNPELTERFELMVNGKE 419
>sp|Q3B365|SYK_PELLD Lysine--tRNA ligase OS=Pelodictyon luteolum (strain DSM 273)
GN=lysS PE=3 SV=1
Length = 501
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
EI PFRRL + ++ G ++ TE + L +L +E P S ++
Sbjct: 316 EISLEAPFRRLTIADSIREYTGAEIEGKTETE-------LRNLAKDLGLELDPKIGSGKI 368
Query: 90 LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
+D++ GEF+E I PTFI D+P MSPLAK HR PGL ERFEL KE
Sbjct: 369 IDEIFGEFVEPKLIQPTFITDYPTEMSPLAKPHRSKPGLVERFELIAGGKE 419
>sp|O67258|SYK_AQUAE Lysine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=lysS PE=3
SV=1
Length = 597
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 25/141 (17%)
Query: 6 MVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 65
+++ T G+ KV Y E+DF+PPF+++ F L+ G +
Sbjct: 387 LLEKTLGTLKVKY--------GEWELDFSPPFKKVRYFDLLKEKTG-----------KDK 427
Query: 66 NKFLSDL----CVKHEVECPPPR--TSARLLDKLVGEFLEETCINPTFICDHPQVMSPLA 119
+ FL DL + E+E P T A+LLDK+ + EE I PTF+ D P+++SPLA
Sbjct: 428 DFFLKDLEGLRKLAKELEIPDVERMTHAKLLDKVFEKVAEEDLIQPTFVIDFPKILSPLA 487
Query: 120 KWHRDHPGLTERFELFVMKKE 140
K HR+ P L ERFEL + + E
Sbjct: 488 KTHREDPDLVERFELIIARYE 508
>sp|Q8DMA9|SYK_THEEB Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1)
GN=lysS PE=3 SV=1
Length = 506
Score = 80.1 bits (196), Expect = 5e-15, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 13/137 (9%)
Query: 12 GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 71
G+ K+TY + ID TPP+RR+ M A+ AA G+ D A
Sbjct: 303 GTLKITYQGE--------TIDLTPPWRRVTMHDAVLAATGIDFRQLG--DLTAAKIAAQK 352
Query: 72 LCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTER 131
+ VK C T R+L+++ + +E T I PTF+ D+P +SPLAK HR PGL ER
Sbjct: 353 VGVKDLDTCD---TIGRVLNEVFEQIVEPTLIQPTFVLDYPVEISPLAKPHRSQPGLVER 409
Query: 132 FELFVMKKEEVLLFPAM 148
FELF++ +E F +
Sbjct: 410 FELFIVGREHANSFSEL 426
>sp|B2RJY1|SYK_PORG3 Lysine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC 33277
/ DSM 20709 / JCM 12257) GN=lysS PE=3 SV=1
Length = 578
Score = 80.1 bits (196), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
IDF P+RR+ M A+ G+ + E + L +C K VE +L+
Sbjct: 319 IDFKAPYRRVTMIEAIHEHTGIDISGMNEAE-------LRQVCDKLGVEHNETMGKGKLI 371
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
D++ GE E+ I PTFI D+P+ MSPL K HR +P LTERFEL V KE
Sbjct: 372 DEIFGEKCEKNYIQPTFITDYPKEMSPLTKEHRTNPELTERFELMVNGKE 421
>sp|Q8YAB8|SYK_LISMO Lysine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=lysS PE=3 SV=1
Length = 498
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 3 VQGMV----KSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPT 58
V+G+V K +G+ ++TY ++D TP +RR+HM A++ +GV N T
Sbjct: 288 VEGLVSTVCKQVNGTTEITY--------GEYKVDLTPNWRRIHMADAVKEYVGVDFWNVT 339
Query: 59 EFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL 118
+++ +L KH+V T +L++ ++EE I PTF+ HP +SPL
Sbjct: 340 ------SDEEARELAKKHDVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPL 393
Query: 119 AKWHRDHPGLTERFELFVMKKEEVLLFPAM 148
AK +++ T+RFELF++ +E F +
Sbjct: 394 AKKNKEDERFTDRFELFIVGREHANAFSEL 423
>sp|Q3ZWX9|SYK_DEHSC Lysine--tRNA ligase OS=Dehalococcoides sp. (strain CBDB1) GN=lysS
PE=3 SV=1
Length = 498
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 14/131 (10%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
V +VK G Y + + + +DFTPP+ RL M A++ G+ FD
Sbjct: 285 VSSVVKEISGGYTLPF--------GDITLDFTPPWPRLTMRDAVKQYAGIDF-----FDF 331
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
P +++ + +++ P + +L+D+LVGEF+E + PTF+ DHP MSPLAK
Sbjct: 332 PTKETLAAEMT-RRKLKVDPAKDWGKLVDELVGEFVEPHLVQPTFLTDHPVAMSPLAKQK 390
Query: 123 RDHPGLTERFE 133
+ P LTERFE
Sbjct: 391 PEDPRLTERFE 401
>sp|A5FRN5|SYK_DEHSB Lysine--tRNA ligase OS=Dehalococcoides sp. (strain BAV1) GN=lysS
PE=3 SV=1
Length = 498
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 14/131 (10%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
V +VK G Y + + + +DFTPP+ RL M A++ G+ FD
Sbjct: 285 VSSVVKEISGGYTLPF--------GDITLDFTPPWPRLTMRDAVKQYAGIDF-----FDF 331
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
P +++ + +++ P + +L+D+LVGEF+E + PTF+ DHP MSPLAK
Sbjct: 332 PTKETLAAEMT-RRKLKVDPAKDWGKLVDELVGEFVEPHLVQPTFLTDHPVAMSPLAKQK 390
Query: 123 RDHPGLTERFE 133
+ P LTERFE
Sbjct: 391 PEDPRLTERFE 401
>sp|B4SB22|SYK_PELPB Lysine--tRNA ligase OS=Pelodictyon phaeoclathratiforme (strain DSM
5477 / BU-1) GN=lysS PE=3 SV=1
Length = 511
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
EI PPFRRL + A+ G + +E K L +E P +S ++
Sbjct: 326 EISLKPPFRRLSIIDAITEYTGQNIAGQSEEQLRYTAKDLG-------LELDPKISSGKI 378
Query: 90 LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
+D++ GEF+E I PTFI D+P MSPLAK H PG+ ERFEL + KE
Sbjct: 379 IDEIFGEFVEPKLIQPTFIIDYPTEMSPLAKEHPSQPGIVERFELIIGGKE 429
>sp|Q7MUV7|SYK_PORGI Lysine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=lysS PE=3 SV=1
Length = 578
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
IDF P++R+ M A+ G+ + E + L +C K VE +L+
Sbjct: 319 IDFKAPYKRVTMIEAIHEHTGIDISGMNEAE-------LRQVCDKLGVEHNETMGKGKLI 371
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
D++ GE E+ I PTFI D+P+ MSPL K HR +P LTERFEL V KE
Sbjct: 372 DEIFGEKCEKNYIQPTFITDYPKEMSPLTKEHRTNPELTERFELMVNGKE 421
>sp|Q8A5W4|SYK_BACTN Lysine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=lysS
PE=3 SV=1
Length = 576
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
I F P+RRL + A++ G L +E + + K L K E E +L+
Sbjct: 317 ISFKAPYRRLPILDAIKEKTGYDLNGKSEEEIRQICKEL-----KME-EIDDTMGKGKLI 370
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
D++ GEF E + I PTFI D+P MSPL K HR PGLTERFEL V KE
Sbjct: 371 DEIFGEFCEGSYIQPTFITDYPVEMSPLTKMHRSKPGLTERFELMVNGKE 420
>sp|A4VTP6|SYK_STRSY Lysine--tRNA ligase OS=Streptococcus suis (strain 05ZYH33) GN=lysS
PE=3 SV=1
Length = 496
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 21 DGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVEC 80
DGP + EI PF+R+HM A++ GV F+ +A L +H+V
Sbjct: 302 DGPVTYQGTEIAIHEPFKRIHMVDAIKEQTGVDFWQEMSFEEAKA------LAAEHKVPV 355
Query: 81 PPPRTS-ARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKK 139
T ++++ E++E T I PTF+ HP +SPLAK + + P T+RFELF+M K
Sbjct: 356 EKHHTEVGQIINSFFEEYVEATLIQPTFVYGHPVAVSPLAKKNDEDPRFTDRFELFIMTK 415
Query: 140 E 140
E
Sbjct: 416 E 416
>sp|A4VZY0|SYK_STRS2 Lysine--tRNA ligase OS=Streptococcus suis (strain 98HAH33) GN=lysS
PE=3 SV=1
Length = 496
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 21 DGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVEC 80
DGP + EI PF+R+HM A++ GV F+ +A L +H+V
Sbjct: 302 DGPVTYQGTEIAIHEPFKRIHMVDAIKEQTGVDFWQEMSFEEAKA------LAAEHKVPV 355
Query: 81 PPPRTS-ARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKK 139
T ++++ E++E T I PTF+ HP +SPLAK + + P T+RFELF+M K
Sbjct: 356 EKHHTEVGQIINSFFEEYVEATLIQPTFVYGHPVAVSPLAKKNDEDPRFTDRFELFIMTK 415
Query: 140 E 140
E
Sbjct: 416 E 416
>sp|P73443|SYK_SYNY3 Lysine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=lysS PE=3 SV=1
Length = 510
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 12 GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 71
G+ K+TY + EID TPP++R+ M A++ G+ T+ +T + +
Sbjct: 307 GTLKITYQGE--------EIDLTPPWKRITMHEAVQLETGIDFSQFTDLETAKQAATKAG 358
Query: 72 LCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTER 131
+ V + CP + LL+ + +E T + PTFI D P +SPLAK HR PGL ER
Sbjct: 359 IGVPED--CP---SLGHLLNHAFEQKVEGTLMQPTFIIDFPVEISPLAKPHRSKPGLVER 413
Query: 132 FELFVMKKE 140
FELFV +E
Sbjct: 414 FELFVYGRE 422
>sp|Q0IDW9|SYK_SYNS3 Lysine--tRNA ligase OS=Synechococcus sp. (strain CC9311) GN=lysS
PE=3 SV=1
Length = 489
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 19/140 (13%)
Query: 12 GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 71
G+ +++Y VE+D TP +RR M ++ A G+ T F+T EA
Sbjct: 291 GTTRISYQG--------VEVDLTPSWRRATMHELVQEATGLDF---TSFETREAA----- 334
Query: 72 LCVKHEVECPPPR---TSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGL 128
+ P P T RLL++ +E I PTF+ D+PQ +SPLA+ HR PGL
Sbjct: 335 VEAMRAANLPAPDKADTVGRLLNEAFEHAVEPNLIQPTFVLDYPQEISPLARKHRSKPGL 394
Query: 129 TERFELFVMKKEEVLLFPAM 148
ERFELF++ +E F +
Sbjct: 395 VERFELFIVGRETANAFSEL 414
>sp|Q9RXE1|SYK_DEIRA Lysine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=lysS PE=3 SV=1
Length = 525
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 71/137 (51%), Gaps = 22/137 (16%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPAL-EAALGVKLPNPTEFD 61
+ G+ K HGSY+ Y +DFTPPF R+ L E G+ +P + D
Sbjct: 303 LSGLAKEVHGSYQFEYQGK--------TLDFTPPFARVDYLGGLREHVPGLDF-DPLDLD 353
Query: 62 TPEANKFLSDLCVKH--EVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLA 119
L C + + + P S +LLDKL GEF+E NPTF+ DHP V+SPLA
Sbjct: 354 R------LRAFCDERFPQWKGVP---SYKLLDKLFGEFVEPLLSNPTFVMDHPAVISPLA 404
Query: 120 KWHRDHP-GLTERFELF 135
K HR P +TERFE+F
Sbjct: 405 KKHRSRPEAVTERFEVF 421
>sp|Q92F47|SYK_LISIN Lysine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=lysS PE=3 SV=1
Length = 498
Score = 77.0 bits (188), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 3 VQGMV----KSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPT 58
V+G+V K +G+ K+TY ++D TP +RR+HM A++ +GV N T
Sbjct: 288 VEGLVSTVCKQVNGTTKITY--------GEYDVDLTPNWRRIHMADAVKEYVGVDFWNVT 339
Query: 59 EFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL 118
+++ +L KH+V T +L++ ++EE I PTF+ HP +SPL
Sbjct: 340 ------SDEEAHELAKKHDVAVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPL 393
Query: 119 AKWHRDHPGLTERFELFVMKKEEVLLFPAM 148
AK +++ T+RFELF++ +E F +
Sbjct: 394 AKKNKEDERFTDRFELFIVGREHANAFSEL 423
>sp|A0M5H8|SYK_GRAFK Lysine--tRNA ligase OS=Gramella forsetii (strain KT0803) GN=lysS
PE=3 SV=1
Length = 569
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 7/111 (6%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
+I+F P++RL M A+ G + +E + EA K + ++E +L
Sbjct: 318 KINFKAPYKRLSMTDAIIEYTGFDITGKSEKELYEAAKGM-------DIEVDDTMGKGKL 370
Query: 90 LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
+D++ GE E I PTFI D+P+ MSPL K HRD+P LTERFEL V KE
Sbjct: 371 IDEIFGEKCEGKFIQPTFITDYPKEMSPLCKEHRDNPELTERFELMVCGKE 421
>sp|Q3ARD7|SYK_CHLCH Lysine--tRNA ligase OS=Chlorobium chlorochromatii (strain CaD3)
GN=lysS PE=3 SV=1
Length = 511
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
EI PPFRRL + A+ + N +E + L ++ + +E P + ++
Sbjct: 326 EISVKPPFRRLTISDAIAEYTDKDIRNKSEEE-------LRNIAKELGLELDPKIGNGKI 378
Query: 90 LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
+D++ GEF+E I PTFI D+P MSPLAK H PG+ ERFEL V KE
Sbjct: 379 IDEIFGEFVEPKLIQPTFITDYPTEMSPLAKEHAAQPGIVERFELIVGGKE 429
>sp|A3CP17|SYK_STRSV Lysine--tRNA ligase OS=Streptococcus sanguinis (strain SK36)
GN=lysS PE=3 SV=1
Length = 496
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 16 VTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCV- 74
V+ + DGP + EI PF+R+HM A++ GV F+ EA + V
Sbjct: 297 VSVNGDGPVNYQGTEIKINEPFKRVHMVDAIKEITGVDFWQDMSFE--EAAALAQEKKVP 354
Query: 75 --KHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERF 132
KH E +++ EF+EET I PTF+ HP +SPLAK + + P T+RF
Sbjct: 355 LEKHFTEV------GHVINAFFEEFVEETLIQPTFVYGHPVAVSPLAKKNPEDPRFTDRF 408
Query: 133 ELFVMKKE 140
ELF+M KE
Sbjct: 409 ELFIMTKE 416
>sp|Q7U9X5|SYK_SYNPX Lysine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=lysS
PE=3 SV=1
Length = 502
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
V + + GS ++TY EID +PP+RR M +E A G+ + F +
Sbjct: 286 VSAVCQEVCGSCQITYQD--------TEIDLSPPWRRATMHELVEEATGLDFNS---FSS 334
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
EA H E + RLL++ + +E T I PTF+ D+P +SPLA+ H
Sbjct: 335 REAAAVAMTGKGLHAPELAD--SVGRLLNEAFEQAVETTLIQPTFVTDYPVEISPLARPH 392
Query: 123 RDHPGLTERFELFVMKKEEVLLFPAM 148
R PGL ERFELF++ +E F +
Sbjct: 393 RSKPGLVERFELFIVGREHANAFSEL 418
>sp|Q9RHV9|SYK_GEOSE Lysine--tRNA ligase OS=Geobacillus stearothermophilus GN=lysS PE=1
SV=1
Length = 494
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
+D TP +RRLHM A++ +GV +F +++ +L +H VE P T ++
Sbjct: 309 VDLTPEWRRLHMVDAIKEYVGV------DFWRQMSDEEARELAKEHGVEVAPHMTFGHIV 362
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAM 148
++ + +E+ I PTFI HP +SPLAK + D P T+RFELF++ +E F +
Sbjct: 363 NEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRFTDRFELFIVGREHANAFTEL 420
>sp|A8F4K1|SYK_THELT Lysine--tRNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301 /
DSM 14385 / TMO) GN=lysS PE=3 SV=1
Length = 498
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ +V +GSYK+TY VE+DF PP++R+ M +++ L V D
Sbjct: 285 ISELVLHLYGSYKLTYQG--------VELDFKPPWKRIKMREFIKSRLDV--------DI 328
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
E N +K P ++ ++++KL + +EE I PTF+ DHP +SPLAK H
Sbjct: 329 LEDNDEKLYYVLKERGVEPDTKSREKMIEKL-WDLVEEEVIQPTFLMDHPVDISPLAKRH 387
Query: 123 RDHPGLTERFELFVMKKE 140
RD P LTERFE + E
Sbjct: 388 RDDPRLTERFEPIIFGME 405
>sp|A8AW92|SYK_STRGC Lysine--tRNA ligase OS=Streptococcus gordonii (strain Challis /
ATCC 35105 / CH1 / DL1 / V288) GN=lysS PE=3 SV=1
Length = 496
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 21 DGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCV---KHE 77
DGP + EI PF+R+HM A++ GV F+ EA + V KH
Sbjct: 302 DGPINYQGTEIKINEPFKRVHMVDAIKEITGVDFWQDMSFE--EATALAKEKNVPLEKHF 359
Query: 78 VECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVM 137
E +++ EF+EET PTFI HP +SPLAK + + P T+RFELF+M
Sbjct: 360 TEV------GHVINAFFEEFVEETLTQPTFIYGHPVAVSPLAKKNPEDPRFTDRFELFIM 413
Query: 138 KKE 140
KE
Sbjct: 414 TKE 416
>sp|Q03LD3|SYK_STRTD Lysine--tRNA ligase OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=lysS PE=3 SV=1
Length = 496
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 11/123 (8%)
Query: 21 DGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCV---KHE 77
DGP + EI PF+R+HM A++ GV F+ EA ++ V KH
Sbjct: 302 DGPVNYQGTEIKINEPFKRIHMVDAIKEITGVDFWQDMTFE--EAVALANEKHVPVEKHY 359
Query: 78 VECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVM 137
E ++++ EF+EET PTF+ HP +SPLAK + + P T+RFELF+M
Sbjct: 360 TEV------GQIINAFFEEFVEETLTQPTFVYGHPVAVSPLAKKNPEDPRFTDRFELFIM 413
Query: 138 KKE 140
KE
Sbjct: 414 TKE 416
>sp|Q7U3A4|SYK_PROMM Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313)
GN=lysS PE=3 SV=1
Length = 508
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 15/138 (10%)
Query: 12 GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 71
GS ++TY +EID TPP+RR M ++ A G+ +F + +
Sbjct: 308 GSTRITYQG--------IEIDLTPPWRRASMHELVQEATGL------DFMGFKDLAVAAS 353
Query: 72 LCVKHEVECPPPRTS-ARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTE 130
+ +E P S RLL++ + +E + I PTF+ D+P +SPLA+ HR PGL E
Sbjct: 354 AMARVGLEVPSKADSVGRLLNEAFEQAVEVSLIQPTFVLDYPIEISPLARQHRSKPGLVE 413
Query: 131 RFELFVMKKEEVLLFPAM 148
RFELF++ +E F +
Sbjct: 414 RFELFIVGRETANAFSEL 431
>sp|Q724I4|SYK_LISMF Lysine--tRNA ligase OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=lysS PE=3 SV=1
Length = 498
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 18/150 (12%)
Query: 3 VQGMV----KSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPT 58
V+G+V K +G+ ++TY +D TP +RR+HM A++ +GV N T
Sbjct: 288 VEGLVSTVCKQVNGTTEITY--------GEYNVDLTPNWRRIHMADAVKEYVGVDFWNVT 339
Query: 59 EFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL 118
+++ +L KH V T +L++ ++EE I PTF+ HP +SPL
Sbjct: 340 ------SDEEARELAKKHNVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPL 393
Query: 119 AKWHRDHPGLTERFELFVMKKEEVLLFPAM 148
AK +++ T+RFELF++ +E F +
Sbjct: 394 AKKNKEDDRFTDRFELFIVGREHANAFSEL 423
>sp|B6YRR7|SYK_AZOPC Lysine--tRNA ligase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=lysS PE=3 SV=1
Length = 500
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 31 IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
I+F P+RR+ M +E GV + E E +FL +E +S +L+
Sbjct: 312 INFKAPYRRITMIDVIEENTGVNIAGMNENQLREVCRFL-------HIEEDKTMSSGKLI 364
Query: 91 DKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFV 136
D++ G+ E I PTFI D+P+ MSPL K HR + LTERFEL V
Sbjct: 365 DEIFGKKCEWKYIQPTFIIDYPKEMSPLCKCHRQNAELTERFELIV 410
>sp|A2C629|SYK_PROM3 Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9303)
GN=lysS PE=3 SV=1
Length = 508
Score = 73.6 bits (179), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 12 GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 71
GS ++TY +EID TPP+RR M ++ A G+ + + +
Sbjct: 308 GSTRITYQG--------IEIDLTPPWRRASMHELVQEATGLDFMGFADRAVAASAMARAG 359
Query: 72 LCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTER 131
L V + + + RLL++ + +E + I PTF+ D+P +SPLA+ HR PGL ER
Sbjct: 360 LEVPSKAD-----SVGRLLNEAFEQAVEVSLIQPTFVLDYPIEISPLARQHRSKPGLVER 414
Query: 132 FELFVMKKEEVLLFPAM 148
FELF++ +E F +
Sbjct: 415 FELFIVGRETANAFSEL 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,186,668
Number of Sequences: 539616
Number of extensions: 3024266
Number of successful extensions: 6005
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5178
Number of HSP's gapped (non-prelim): 686
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)