Query psy9364
Match_columns 156
No_of_seqs 119 out of 1052
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:14:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1190 LysU Lysyl-tRNA synthe 100.0 4.1E-44 8.8E-49 312.1 13.7 141 2-156 293-437 (502)
2 KOG1885|consensus 100.0 5.8E-44 1.3E-48 308.0 10.4 153 2-155 338-492 (560)
3 PLN02502 lysyl-tRNA synthetase 100.0 2.1E-37 4.5E-42 276.3 14.2 145 2-156 342-488 (553)
4 PTZ00385 lysyl-tRNA synthetase 100.0 6.8E-36 1.5E-40 269.7 15.8 154 2-156 346-501 (659)
5 PTZ00417 lysine-tRNA ligase; P 100.0 2.5E-35 5.4E-40 264.1 13.7 151 2-155 366-519 (585)
6 TIGR00499 lysS_bact lysyl-tRNA 100.0 8.2E-35 1.8E-39 257.2 14.6 141 2-156 285-431 (496)
7 PRK12445 lysyl-tRNA synthetase 100.0 2.5E-34 5.5E-39 254.5 14.6 141 2-156 297-440 (505)
8 PRK00484 lysS lysyl-tRNA synth 100.0 1.4E-33 3E-38 249.2 14.4 140 2-156 285-426 (491)
9 PRK02983 lysS lysyl-tRNA synth 100.0 6.5E-32 1.4E-36 255.8 15.3 146 2-156 883-1030(1094)
10 COG2269 Truncated, possibly in 100.0 2.4E-31 5.1E-36 218.9 8.7 114 35-155 142-259 (322)
11 cd00775 LysRS_core Lys_tRNA sy 100.0 1.3E-29 2.8E-34 214.1 14.9 143 2-155 121-265 (329)
12 TIGR00462 genX lysyl-tRNA synt 100.0 5E-28 1.1E-32 202.6 12.4 116 33-155 126-245 (304)
13 PRK09350 poxB regulator PoxA; 99.9 2.5E-27 5.4E-32 198.5 12.2 114 35-155 131-250 (306)
14 PRK05159 aspC aspartyl-tRNA sy 99.9 2.8E-22 6E-27 175.1 7.3 120 2-155 249-377 (437)
15 cd00776 AsxRS_core Asx tRNA sy 99.9 8.9E-22 1.9E-26 166.0 8.0 102 29-155 161-266 (322)
16 PF00152 tRNA-synt_2: tRNA syn 99.8 3.3E-21 7.2E-26 162.5 5.7 115 30-155 157-275 (335)
17 TIGR00458 aspS_arch aspartyl-t 99.8 1.8E-20 3.9E-25 163.4 7.6 116 2-155 245-368 (428)
18 cd00669 Asp_Lys_Asn_RS_core As 99.8 7.2E-19 1.6E-23 145.2 8.5 93 2-155 114-209 (269)
19 TIGR00459 aspS_bact aspartyl-t 99.8 2.3E-18 4.9E-23 155.0 11.0 59 97-155 415-495 (583)
20 PTZ00401 aspartyl-tRNA synthet 99.7 3.2E-17 7E-22 146.8 10.2 71 85-155 416-490 (550)
21 PLN02850 aspartate-tRNA ligase 99.7 4.9E-17 1.1E-21 145.2 8.8 85 71-155 382-470 (530)
22 PRK06462 asparagine synthetase 99.7 9.4E-17 2E-21 136.2 8.2 113 2-151 150-269 (335)
23 TIGR00457 asnS asparaginyl-tRN 99.6 2.7E-15 5.8E-20 131.9 4.8 50 102-151 337-387 (453)
24 PRK03932 asnC asparaginyl-tRNA 99.5 1.2E-14 2.7E-19 127.6 7.7 50 100-150 332-383 (450)
25 cd00777 AspRS_core Asp tRNA sy 99.5 8E-15 1.7E-19 121.8 5.8 89 32-155 126-220 (280)
26 PLN02221 asparaginyl-tRNA synt 99.5 1.8E-13 3.8E-18 123.3 8.9 87 33-151 407-499 (572)
27 PLN02603 asparaginyl-tRNA synt 99.4 1.1E-12 2.4E-17 118.1 8.2 130 2-151 367-499 (565)
28 PLN02532 asparagine-tRNA synth 99.3 1.7E-12 3.7E-17 117.8 7.1 125 2-151 435-567 (633)
29 PTZ00425 asparagine-tRNA ligas 99.1 5.5E-10 1.2E-14 101.0 10.4 57 95-151 462-520 (586)
30 COG0017 AsnS Aspartyl/asparagi 99.0 1.3E-09 2.8E-14 95.3 9.3 89 34-151 276-369 (435)
31 KOG0556|consensus 98.1 1E-05 2.3E-10 70.6 6.8 96 30-151 368-467 (533)
32 KOG0554|consensus 97.7 0.00012 2.7E-09 63.6 7.1 48 103-151 335-384 (446)
33 KOG0555|consensus 97.6 9.9E-05 2.1E-09 64.5 5.5 96 34-151 382-479 (545)
34 PRK00476 aspS aspartyl-tRNA sy 97.0 0.00041 8.8E-09 63.4 2.7 52 104-155 425-500 (588)
35 COG0173 AspS Aspartyl-tRNA syn 96.9 0.0058 1.3E-07 55.4 8.7 51 101-151 421-492 (585)
36 PRK12820 bifunctional aspartyl 95.4 0.012 2.7E-07 54.9 3.1 53 103-155 441-516 (706)
37 PLN02903 aminoacyl-tRNA ligase 95.3 0.013 2.9E-07 54.2 2.9 52 104-155 493-563 (652)
38 KOG2411|consensus 91.0 0.28 6.1E-06 44.4 3.9 51 104-154 465-539 (628)
39 PRK00476 aspS aspartyl-tRNA sy 78.5 2 4.2E-05 39.6 3.0 23 32-55 266-288 (588)
40 PF07498 Rho_N: Rho terminatio 77.6 5 0.00011 24.0 3.7 34 66-99 7-40 (43)
41 PF10281 Ish1: Putative stress 77.6 6.4 0.00014 22.8 4.1 29 67-95 7-36 (38)
42 PRK12820 bifunctional aspartyl 76.2 2.2 4.7E-05 40.2 2.7 23 31-54 279-301 (706)
43 PLN02903 aminoacyl-tRNA ligase 64.6 6.1 0.00013 37.0 2.9 20 31-50 328-347 (652)
44 KOG2411|consensus 58.2 7.1 0.00015 35.7 2.1 23 30-53 302-324 (628)
45 PF12949 HeH: HeH/LEM domain; 53.2 16 0.00034 21.2 2.3 26 67-92 7-32 (35)
46 PRK13344 spxA transcriptional 35.2 72 0.0016 23.4 4.1 34 73-110 64-98 (132)
47 cd02977 ArsC_family Arsenate R 33.1 55 0.0012 22.5 3.0 35 73-110 63-98 (105)
48 PF02037 SAP: SAP domain; Int 32.8 96 0.0021 17.4 4.3 28 66-95 6-33 (35)
49 PTZ00425 asparagine-tRNA ligas 30.7 48 0.001 30.8 3.0 17 33-49 424-440 (586)
50 cd03024 DsbA_FrnE DsbA family, 25.8 2.5E+02 0.0054 21.0 5.9 44 67-110 132-182 (201)
51 COG0329 DapA Dihydrodipicolina 25.1 1.6E+02 0.0034 24.6 5.0 76 37-114 57-141 (299)
52 cd03034 ArsC_ArsC Arsenate Red 25.0 88 0.0019 22.1 3.0 33 74-110 64-97 (112)
53 cd03032 ArsC_Spx Arsenate Redu 24.7 1.1E+02 0.0024 21.5 3.4 34 73-110 64-98 (115)
54 cd00953 KDG_aldolase KDG (2-ke 23.9 2.2E+02 0.0047 23.3 5.5 72 38-113 53-131 (279)
55 PRK12559 transcriptional regul 22.0 1.4E+02 0.0031 21.8 3.7 33 73-109 64-97 (131)
56 PRK01655 spxA transcriptional 21.9 1.4E+02 0.003 21.8 3.6 33 73-109 64-97 (131)
57 PF03705 CheR_N: CheR methyltr 21.8 1.9E+02 0.0042 17.3 4.4 44 42-93 8-51 (57)
58 cd03036 ArsC_like Arsenate Red 21.1 1.8E+02 0.0038 20.4 3.9 25 83-110 74-99 (111)
59 TIGR00014 arsC arsenate reduct 20.9 3.1E+02 0.0067 19.3 5.2 34 73-110 64-98 (114)
60 cd03033 ArsC_15kD Arsenate Red 20.3 3.2E+02 0.007 19.3 5.2 25 83-110 71-96 (113)
61 PF11630 DUF3254: Protein of u 20.2 55 0.0012 23.4 1.1 20 128-147 40-59 (100)
No 1
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-44 Score=312.14 Aligned_cols=141 Identities=40% Similarity=0.666 Sum_probs=130.0
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
||+.+|+.++|+++|.|+ +.+|||++||+|++|.||+++++|+++... .+ .+.++++|+++++++.
T Consensus 293 Li~~~a~~v~gt~~v~y~--------~~~id~~~pf~ri~m~dal~e~~g~~~~~~--~~----~e~~~~~ak~~~i~~~ 358 (502)
T COG1190 293 LIKELAKEVNGTTKVTYG--------GQEIDFSKPFKRITMVDALKEYLGVDFDDL--FD----DEEAKELAKKHGIEVE 358 (502)
T ss_pred HHHHHHHHhcCCeEEEEC--------CEeEecCCCeeeeehHHHHHHHhCcccccc--CC----HHHHHHHHHHhCCCcC
Confidence 789999999999999996 689999999999999999999999863322 12 4689999999999987
Q ss_pred CC--CCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhcC
Q psy9364 82 PP--RTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRTL 156 (156)
Q Consensus 82 ~~--~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r~ 156 (156)
+. |+++++++++|+++||++|+|||||+|||.++|||||.|+++|++++||||||+|+|+|||||||||| ||+|.
T Consensus 359 ~~~~~~~g~ll~~lFe~~vE~~liqPTFv~d~P~eiSPLak~~~~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF 437 (502)
T COG1190 359 KYGTWGLGHLLNELFEELVEAKLIQPTFVTDHPVEISPLAKRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERF 437 (502)
T ss_pred ccccccHHHHHHHHHHHHhhhhhcCCceeecCccccCccccCCCCCcchhhhheeeeccEEeeeccchhcCHHHHHHHH
Confidence 65 77999999999999999999999999999999999999999999999999999999999999999999 98873
No 2
>KOG1885|consensus
Probab=100.00 E-value=5.8e-44 Score=307.98 Aligned_cols=153 Identities=58% Similarity=1.035 Sum_probs=146.3
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
|+++|++.++|+++|+|+|.|++.. ..++||++||+|++|.+.+++.+|++++.++++++++..+.|.++|+.++++++
T Consensus 338 l~s~mv~~i~G~~~i~y~p~~~~~~-~~eldf~~pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p 416 (560)
T KOG1885|consen 338 LLSGMVKNITGSYKITYHPNGPEEP-ELELDFTRPFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECP 416 (560)
T ss_pred HHHHHHHhhcCceeEeecCCCCCCC-ceeeeccCCeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCC
Confidence 7899999999999999999887634 688999999999999999999999999987778999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
+..+.++++|+|+++++|++|++||||+|||..||||||.|++++++++||||||+|+||||||+||||| ||+|
T Consensus 417 ~p~t~arlLdKLvg~flE~~cvnPTFi~~hP~imSPLAK~hrs~~glteRFElFi~~kEicNAYtElNdP~~Qr~r 492 (560)
T KOG1885|consen 417 PPRTTARLLDKLVGEFLEPTCVNPTFIIDHPQIMSPLAKYHRSKAGLTERFELFIAGKEICNAYTELNDPVDQRQR 492 (560)
T ss_pred CcccHHHHHHHHHhHhhccccCCCeeEcCCchhcCccccccccccchhhHHHHhhhhHHHhhhhhhhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 8876
No 3
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=2.1e-37 Score=276.31 Aligned_cols=145 Identities=52% Similarity=0.915 Sum_probs=133.4
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|++++++++|+.++.|+ +.+|||++||+|+||.|+|++++|+++... ++.+++.+.|.+++++.|++++
T Consensus 342 li~~i~~~v~~~~~~~~~--------~~~i~~~~p~~rit~~e~l~~~~g~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 411 (553)
T PLN02502 342 MVSGMVKELTGSYKIKYH--------GIEIDFTPPFRRISMISLVEEATGIDFPAD--LKSDEANAYLIAACEKFDVKCP 411 (553)
T ss_pred HHHHHHHHHhcccccccC--------CccccCCCCceeccHHHHHHHHhCCCCCcC--CCHHHHHHHHHHHHHHcCCCCC
Confidence 578999999999999985 468999999999999999999999998642 4555666778889999999998
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhcC
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRTL 156 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r~ 156 (156)
+.++++++++++|+++||++|++||||+|||.++|||||.++++|++++||||||+|+||||||+||||| ||+|+
T Consensus 412 ~~~~~~~~l~~l~~~~ve~~l~~PtFV~dyP~~~splak~~~~~p~~~erFELfi~G~Eiangy~ELnDp~~Qr~rf 488 (553)
T PLN02502 412 PPQTTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELANAFSELTDPVDQRERF 488 (553)
T ss_pred CCCCHhHHHHHHHHHHHHhhcCCCEEEECCccccCcccccCCCCCCeEEEEEEEeCCeEEccchhhccCHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999 88874
No 4
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.8e-36 Score=269.68 Aligned_cols=154 Identities=32% Similarity=0.647 Sum_probs=134.3
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|+.++++++|+.+++|.+..+. |.+.+|||++||+|+||.+++++++|+|+...+++++++..+.++.+++++|++++
T Consensus 346 li~~~~~~v~g~~~~~~~~~~~~-g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~ 424 (659)
T PTZ00385 346 IFRQLAMRVNGTTVVQIYPENAH-GNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLP 424 (659)
T ss_pred HHHHHHHHhcCCeeEEeeccccC-CCcccccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCC
Confidence 57899999999999998532111 22247999999999999999999999998654456555445566889999999998
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhcC
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRTL 156 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r~ 156 (156)
+.++.+++++++|+.+||+++++||||+|||.++|||||.++++|++++||||||+|+||||||+||||| ||+|+
T Consensus 425 ~~~~~g~~~~~lfe~~ve~~l~qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi~G~EiaNGysELnDp~eQr~Rf 501 (659)
T PTZ00385 425 PVRTAAKMFEKLIDFFITDRVVEPTFVMDHPLFMSPLAKEQVSRPGLAERFELFVNGIEYCNAYSELNDPHEQYHRF 501 (659)
T ss_pred cccchhHHHHHHHHHHHHHhhCCcEEEeCCccccCcccccCCCCCCeEEEEEEEeCCeEeeecccccCCHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999 88763
No 5
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=2.5e-35 Score=264.15 Aligned_cols=151 Identities=42% Similarity=0.790 Sum_probs=129.5
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|+.++++++|+.++.|+..|++ +...+|||++||+|+||.+|+++++|+|+... ++.....+.+.+++++.|++++
T Consensus 366 Li~~v~~~v~g~~~~~~~~~g~~-~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~~--~~~~~~~~el~~~l~~~g~~~~ 442 (585)
T PTZ00417 366 FFSQLVMHLFGTYKILYNKDGPE-KDPIEIDFTPPYPKVSIVEELEKLTNTKLEQP--FDSPETINKMINLIKENKIEMP 442 (585)
T ss_pred HHHHHHHHhcCcceeeecccccc-cccccccCCCCceeccHHHHHHHHhCCCcccc--ccccCCHHHHHHHHHHcCCCCC
Confidence 57889999999999999633321 11347999999999999999999999987531 1111125778899999999888
Q ss_pred CCCCHHHHHHHHHHHhhhcccCC-cEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 82 PPRTSARLLDKLVGEFLEETCIN-PTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~-PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
..++++++++++|+++|||+|++ ||||+|||+++|||||.++++|++++||||||+|+||||||+||||| ||+|
T Consensus 443 ~~~~~~~~l~~l~e~~vE~~l~~~PtFI~dyP~~~sPLak~~~~dp~v~eRFELfi~G~EiangysELnDp~eQr~R 519 (585)
T PTZ00417 443 NPPTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPLAKYHRSKPGLTERLEMFICGKEVLNAYTELNDPFKQKEC 519 (585)
T ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEECCChhhCchhhhcCCCCCeEEeEEeEECCEEEccCcchhcCHHHHHHH
Confidence 78899999999999999999985 99999999999999999999999999999999999999999999999 8775
No 6
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=8.2e-35 Score=257.24 Aligned_cols=141 Identities=33% Similarity=0.547 Sum_probs=126.9
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHH---HHhCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALE---AALGVKLPNPTEFDTPEANKFLSDLCVKHEV 78 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~---~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i 78 (156)
+|+++++.++|+.++.|+ +.+++|++||+|+||.||++ +++|+++.. +++ .+.+++++++.|+
T Consensus 285 li~~i~~~l~~~~~~~~~--------~~~~~~~~pf~rit~~eai~~~~~~~g~~~~~---~~~---~~~l~~~~~~~~~ 350 (496)
T TIGR00499 285 LFKFLAQELLGTTKITYG--------ELEIDFKKPFKRITMVEAIKKYDMETGIDFDD---LKD---FETAKALAKKIGI 350 (496)
T ss_pred HHHHHHHHHhcccceecC--------ceeccCCCCceEEEHHHHHHHHHHhcCCCchh---cCC---HHHHHHHHHHcCC
Confidence 578899999999999884 46899999999999999999 889998743 222 3668889999999
Q ss_pred CC-CCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 79 EC-PPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 79 ~~-~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
++ ...++++++++++|+++|||+|.+||||+|||+++|||||.++++|++++||||||+|+||||||+||||| ||+|
T Consensus 351 ~~~~~~~~~~~~l~~~~~~~ve~~l~~P~fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~Ei~ng~~El~dp~~q~~r 430 (496)
T TIGR00499 351 EVAEKSLTLGHILNELFEQFLEHTLIQPTFITHYPAEISPLAKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLDQRER 430 (496)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhccCCCEEEECCchhcCcccccCCCCCCeEEEEEEEeCCeEEeccccccCCHHHHHHH
Confidence 88 56688999999999999999999999999999999999999999999999999999999999999999999 8876
Q ss_pred C
Q psy9364 156 L 156 (156)
Q Consensus 156 ~ 156 (156)
+
T Consensus 431 f 431 (496)
T TIGR00499 431 F 431 (496)
T ss_pred H
Confidence 3
No 7
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.5e-34 Score=254.51 Aligned_cols=141 Identities=25% Similarity=0.385 Sum_probs=126.7
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhC-CCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALG-VKLPNPTEFDTPEANKFLSDLCVKHEVEC 80 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~G-id~~~~~~~~~~~~~~~l~~~~~~~~i~~ 80 (156)
+|+.++++++|+.++.|+ +..+||++||+|+||.||+++++| +|+... +. .+.|+++++++|+++
T Consensus 297 li~~l~~~~~~~~~~~~~--------~~~i~~~~pf~rit~~eai~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~ 362 (505)
T PRK12445 297 LFRTLAQEVLGTTKVTYG--------EHVFDFGKPFEKLTMREAIKKYRPETDMADL---DN---FDAAKALAESIGITV 362 (505)
T ss_pred HHHHHHHHHhcccceecC--------ceeccCCCCceEEEHHHHHHHHhCCCCcccc---CC---HHHHHHHHHHcCCCC
Confidence 578899999999998884 467999999999999999999998 465332 11 467889999999988
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhcC
Q psy9364 81 PPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRTL 156 (156)
Q Consensus 81 ~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r~ 156 (156)
.+.++++++++++|+++||++|++||||+|||.++|||||.++++|++++||||||+|+||||||+||||| ||+|+
T Consensus 363 ~~~~~~~~l~~~~~~~~vE~~l~~P~Fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf 440 (505)
T PRK12445 363 EKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERF 440 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCEEEECCCchhCcccccCCCCCCceEEEEEEeCCEEEcccccccCCHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999 77763
No 8
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-33 Score=249.19 Aligned_cols=140 Identities=37% Similarity=0.631 Sum_probs=127.1
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|+++++.+.|+..+.|. +..+|++.||+|+||.||+++++|+++.. .+ .+.+++++++++++++
T Consensus 285 li~~i~~~~~~~~~i~~~--------~~~~~~~~pf~rity~eai~~~~g~~~~~---~~----~~~~~~~~~~~~~~~~ 349 (491)
T PRK00484 285 LIRHLAQAVLGTTKVTYQ--------GTEIDFGPPFKRLTMVDAIKEYTGVDFDD---MT----DEEARALAKELGIEVE 349 (491)
T ss_pred HHHHHHHHHhCCceEecC--------CEeecCCCCceEEEHHHHHHHHhCCCccc---CC----HHHHHHHHHHcCCCCC
Confidence 578888899999999885 56899999999999999999999998752 22 3567788899999888
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhcC
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRTL 156 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r~ 156 (156)
+.++++++++++|+++||+++.+||||+|||.++|||||.++++|++++||||||+|+||||||+||||| ||+|+
T Consensus 350 ~~~~~~~l~~~l~~~~ve~~~~~P~Fi~dyP~~~~pf~k~~~~~~~~~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~ 426 (491)
T PRK00484 350 KSWGLGKLINELFEEFVEPKLIQPTFITDYPVEISPLAKRHREDPGLTERFELFIGGREIANAFSELNDPIDQRERF 426 (491)
T ss_pred CCCCHHHHHHHHHHHHhhhhcCCcEEEECCChHHhhhhccCCCCCCeEEEEEEEECCEEEecchhhhCCHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999 87763
No 9
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=99.98 E-value=6.5e-32 Score=255.81 Aligned_cols=146 Identities=25% Similarity=0.402 Sum_probs=128.4
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|++++++++|+.++.|+ +.+ +...++||++||+|+||.||+++++|+++...+ + .+.+++++++.|++++
T Consensus 883 li~~i~~~v~~~~~~~~~--~~~-~~~~~i~~~~pf~rit~~eai~~~~g~~~~~~~--~----~~~l~~~~~~~~i~~~ 953 (1094)
T PRK02983 883 LIQNAAQAAHGAPVVMRP--DGD-GVLEPVDISGPWPVVTVHDAVSEALGEEIDPDT--P----LAELRKLCDAAGIPYR 953 (1094)
T ss_pred HHHHHHHHHhCCcEEeeC--Ccc-ccccccccCCCceEEEHHHHHHHHhCCCCCCCC--C----HHHHHHHHHHcCCCCC
Confidence 678999999999988874 111 112469999999999999999999999886432 2 4678889999999988
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhcC
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRTL 156 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r~ 156 (156)
+.++.+++++++|+++||+++++||||+|||.++|||||.+++||++++||||||+|+||||||+||||| ||+|+
T Consensus 954 ~~~~~~~l~~~l~~~~ve~~~~~P~Fv~dyP~~~spla~~~~~~p~~~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~ 1030 (1094)
T PRK02983 954 TDWDAGAVVLELYEHLVEDRTTFPTFYTDFPTSVSPLTRPHRSDPGLAERWDLVAWGVELGTAYSELTDPVEQRRRL 1030 (1094)
T ss_pred CCCCHhHHHHHHHHHHHHhhcCCCEEEECCCcccccccccCCCCCCeeEEEEEEECCEEEeccccccCCHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999 87763
No 10
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.4e-31 Score=218.94 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=107.0
Q ss_pred CCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccC--CcEEEecCC
Q psy9364 35 PPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCI--NPTFICDHP 112 (156)
Q Consensus 35 ~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~--~PtFI~dyP 112 (156)
.+++|+||.+||.+++|+|+... + ...|++.+++.|+.....++|+++++.||.+.|||+|+ .||||+|||
T Consensus 142 ~~~E~ls~~eaF~r~~gid~l~~---~----~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP 214 (322)
T COG2269 142 VEAERLSYQEAFLRYLGIDPLSA---D----KTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFP 214 (322)
T ss_pred CCcceeeHHHHHHHHhCCCcccc---c----HHHHHHHHHhcCCCCCCccCHHHHHHHHHHhhcCcccCCCCceEEEeCc
Confidence 56999999999999999998651 1 57899999999999888899999999999999999998 899999999
Q ss_pred CCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 113 QVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 113 ~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
+.+++||+++.+||+|+||||||++|+||||||.||+|+ ||+|
T Consensus 215 ~~qaaLA~i~~~D~rVAERFElY~kGiELaNgf~EltDa~EqrrR 259 (322)
T COG2269 215 ASQAALAQISTGDPRVAERFELYYKGIELANGFHELTDAAEQRRR 259 (322)
T ss_pred HHHHHhhccCCCCcchhhhhhheeeeeeecccchhcCCHHHHHHH
Confidence 999999999999999999999999999999999999999 8887
No 11
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=99.97 E-value=1.3e-29 Score=214.13 Aligned_cols=143 Identities=42% Similarity=0.672 Sum_probs=117.2
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|+.+++.+.+...+.+. +..++++.||+|+||.|||++++|+++...++... .+.++.+....+...+
T Consensus 121 li~~i~~~~~~~~~~~~~--------~~~~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 189 (329)
T cd00775 121 LFSGLVKKINGKTKIEYG--------GKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQP---EELAKLLAKLIKEKIE 189 (329)
T ss_pred HHHHHHHHHhCCceeecC--------CccccCCCCceEEEHHHHHHHHhCCCcccccccCC---HHHHHHHHHHcCCCCC
Confidence 456677777776666653 34677888999999999999999998765433322 2444455555555655
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
...+++.+++++|+++|||++.+||||+|||+.++||||..+++|++++||||||+|+||||||+||||| |++|
T Consensus 190 ~~~~~~~~l~~l~~~~ve~~~~~p~fi~~yP~~~~~f~~~~~~~~~~~~rfdl~~~G~Ei~~G~~el~d~~e~~~r 265 (329)
T cd00775 190 KPRTLGKLLDKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPGLTERFELFICGKEIANAYTELNDPFDQRER 265 (329)
T ss_pred CCCCHHHHHHHHHHHHhccccCCCEEEECCChHhCcCcCcCCCCCCeeEEEEeEECCEEEEcccchhCCHHHHHHH
Confidence 5668999999999999999999999999999999999999889999999999999999999999999998 6665
No 12
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=99.95 E-value=5e-28 Score=202.57 Aligned_cols=116 Identities=28% Similarity=0.354 Sum_probs=104.4
Q ss_pred CCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhccc--CCcEEEec
Q psy9364 33 FTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETC--INPTFICD 110 (156)
Q Consensus 33 ~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l--~~PtFI~d 110 (156)
++.||+|+||.+||++++|+++... + .+.+..++++.|+.+...++++.+++++|.++|||++ .+|+||+|
T Consensus 126 ~~~~~~~it~~ea~~~~~~~~~~~~---~----~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~ 198 (304)
T TIGR00462 126 PFAPWERLSYQEAFLRYAGIDPLTA---S----LDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYD 198 (304)
T ss_pred cCCCcEEEEHHHHHHHHhCCCcccC---C----HHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 3579999999999999999987542 2 3567788889998887778999999999999999999 58999999
Q ss_pred CCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 111 HPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 111 yP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
||.+++||||.++++|++++|||||++|+||+|||+||||| |++|
T Consensus 199 yP~~~~~~~~~~~~~~~~~~rfdl~~~G~Ei~~G~~el~d~~~~~~r 245 (304)
T TIGR00462 199 YPASQAALARISPDDPRVAERFELYIKGLELANGFHELTDAAEQRRR 245 (304)
T ss_pred CccccCcCccccCCCCCeeEEEEEEECCEEEeeceeecCCHHHHHHH
Confidence 99999999999999999999999999999999999999999 6554
No 13
>PRK09350 poxB regulator PoxA; Provisional
Probab=99.95 E-value=2.5e-27 Score=198.51 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=100.5
Q ss_pred CCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCC--CCCCCCCHHHHHHHHHHHhhhcccC--CcEEEec
Q psy9364 35 PPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEV--ECPPPRTSARLLDKLVGEFLEETCI--NPTFICD 110 (156)
Q Consensus 35 ~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i--~~~~~~~~~~ll~~lf~~~vEp~l~--~PtFI~d 110 (156)
.||+|++|.+||++++|+++... + .+.+.+.+++.|+ ..+...+++.+++.+|.++|||+|+ .|+||+|
T Consensus 131 ~~~~~i~~~eaf~~~~g~~~~~~---~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~ 203 (306)
T PRK09350 131 EPAESLSYQQAFLRYLGIDPLSA---D----KTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYH 203 (306)
T ss_pred CCceEEEHHHHHHHHhCCCCCcC---C----HHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 68999999999999999976532 2 3557777888887 3445678999999999999999997 5999999
Q ss_pred CCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 111 HPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 111 yP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
||++++||||.++++|++++||||||+|+||||||+||||| |++|
T Consensus 204 yP~~~~~~a~~~~~~~~~~~rfdl~i~G~Ei~nG~~el~d~~~~~~r 250 (306)
T PRK09350 204 FPASQAALAKISTEDHRVAERFEVYFKGIELANGFHELTDAREQRQR 250 (306)
T ss_pred CccccCccccccCCCCCeeEEEEEEECCEEEecchhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999 6665
No 14
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=99.86 E-value=2.8e-22 Score=175.12 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=90.2
Q ss_pred hHHHHHHHhcCCcEE--EecCCCCCCCCCeEec-CCCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHHHHHHHc
Q psy9364 2 HVQGMVKSTHGSYKV--TYHPDGPESGSPVEID-FTPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLSDLCVKH 76 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i--~~~~~~~~~~~~~~id-~~~pf~rit~~ea~~~~~--Gid~~~~~~~~~~~~~~~l~~~~~~~ 76 (156)
+|+.+++.+.++..- .+. +..++ ++.||+|+||.||++.+. |+++.+..
T Consensus 249 lv~~i~~~~~~~~~~~i~~~--------~~~~~~~~~~f~rit~~eA~~~l~~~~~~~~~~~------------------ 302 (437)
T PRK05159 249 LLRYMYEDVAENCEKELELL--------GIELPVPETPIPRITYDEAIEILKSKGNEISWGD------------------ 302 (437)
T ss_pred HHHHHHHHHHHhhHHHHHhh--------ccCCCcCCCCceEeEHHHHHHHHHHcCCCCCCCC------------------
Confidence 456677776655321 121 12233 568999999999998874 54443321
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcccCC-cEEEecCCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCcccchh--h
Q psy9364 77 EVECPPPRTSARLLDKLVGEFLEETCIN-PTFICDHPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--R 152 (156)
Q Consensus 77 ~i~~~~~~~~~~ll~~lf~~~vEp~l~~-PtFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysELnDp--q 152 (156)
++....++++.+++++++.. |+||+|||+++||| +|.++++|++++|||||++|+||||||+|+||+ |
T Consensus 303 --------~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~Ei~~g~~r~~d~~~~ 374 (437)
T PRK05159 303 --------DLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGLEITSGGQRIHRYDML 374 (437)
T ss_pred --------CCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCEEEeeCeEEcCCHHHH
Confidence 12334566777777888775 89999999999999 889999999999999999999999999999999 6
Q ss_pred hhc
Q psy9364 153 RRT 155 (156)
Q Consensus 153 r~r 155 (156)
++|
T Consensus 375 ~~~ 377 (437)
T PRK05159 375 VES 377 (437)
T ss_pred HHH
Confidence 665
No 15
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=99.86 E-value=8.9e-22 Score=165.98 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=79.1
Q ss_pred eEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccCCcEEE
Q psy9364 29 VEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFI 108 (156)
Q Consensus 29 ~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI 108 (156)
..++++.||+|+||.||++.+.+++.... . ..+.++....++++.+.++ .+|+||
T Consensus 161 ~~~~~~~~~~rit~~eA~~~l~~~~~~~~--~--------------------~~~~~l~~~~e~~l~~~~~---~~p~fi 215 (322)
T cd00776 161 ELLKPLEPFPRITYDEAIELLREKGVEEE--V--------------------KWGEDLSTEHERLLGEIVK---GDPVFV 215 (322)
T ss_pred ccccCCCCceEEEHHHHHHHHHHcCCCCC--C--------------------CccchhcHHHHHHHHHHhC---CCcEEE
Confidence 35678899999999999999877644200 0 0011233344444444443 689999
Q ss_pred ecCCCCCccc-ccccCCCCCceeeeeeeecC-EeeecCCcccchh--hhhc
Q psy9364 109 CDHPQVMSPL-AKWHRDHPGLTERFELFVMK-KEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 109 ~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G-~ElaNgysELnDp--qr~r 155 (156)
+|||.+++|| +|.++++|++++|||||++| .||||||+|+||+ |++|
T Consensus 216 ~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r 266 (322)
T cd00776 216 TDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEER 266 (322)
T ss_pred ECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHH
Confidence 9999999999 88999999999999999999 9999999999999 7665
No 16
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=99.83 E-value=3.3e-21 Score=162.45 Aligned_cols=115 Identities=31% Similarity=0.388 Sum_probs=81.1
Q ss_pred EecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH-hhhcccCCcEEE
Q psy9364 30 EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGE-FLEETCINPTFI 108 (156)
Q Consensus 30 ~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~-~vEp~l~~PtFI 108 (156)
.+++..||+|++|.||++.+.|.++... .+ .....+.+. .+.+.. .++++..+.+. ++++....|+||
T Consensus 157 ~~~~~~~f~ri~~~ea~~~~~~~~~~~~--~~--~~l~~~~~~-~~~~~~------~~~~l~~~~e~~L~~~~~~~p~fI 225 (335)
T PF00152_consen 157 NIDLPKPFPRITYEEAFEIYGGDKPDLR--FD--EELDDLAEI-EELEFE------VGRLLSEEVEPYLVEKYFTDPVFI 225 (335)
T ss_dssp CEESSSS-EEEEHHHHHHHHHHTTTTTT--TC--HHHHHHHHH-HHTTHH------CHHHHHHHHHHHHHHHHSSSEEEE
T ss_pred cccccCCceEeeehHHHHHhhcccccch--hH--HHHHHHHHH-hcccch------HHHHHHHHHHHHhhhcccCCcEEE
Confidence 5777889999999999999998764322 11 112223333 221111 14455555444 333455699999
Q ss_pred ecCCCCCcccccccCCCC-CceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 109 CDHPQVMSPLAKWHRDHP-GLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 109 ~dyP~~~spLAk~~~~~~-~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
+|||..++||++.+.+++ ++++|||||++|+||||||+|+||+ |++|
T Consensus 226 ~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~r 275 (335)
T PF00152_consen 226 TDYPAEQSPFYKPPNDDDPGVAERFDLYIPGGEIANGSQREHDPEELRER 275 (335)
T ss_dssp EEEBGGGSTTTBBBSSSTTTBBSEEEEEETTEEEEEEEEB--SHHHHHHH
T ss_pred EecccccCcccccccccccccccceeEEEeCEEEehHHhhhhHHHHHHHH
Confidence 999999999999888776 9999999999999999999999999 7765
No 17
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=99.82 E-value=1.8e-20 Score=163.44 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=84.4
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecC---CCCceeeeHHHHHHHH--hCCCCCCCCCCChHHHHHHHHHHHHHc
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDF---TPPFRRLHMFPALEAA--LGVKLPNPTEFDTPEANKFLSDLCVKH 76 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~---~~pf~rit~~ea~~~~--~Gid~~~~~~~~~~~~~~~l~~~~~~~ 76 (156)
+|+++++.+.++....+. ...+++ ++||+|+||.||++.. .|+++.+..++
T Consensus 245 li~~i~~~~~~~~~~~~~--------~~~~~~~~~~~pf~rity~eA~~~l~~~g~~~~~~~~l---------------- 300 (428)
T TIGR00458 245 LVVRVFEDVPERCAHQLE--------TLEFKLEKPEGKFVRLTYDEAIEMANAKGVEIGWGEDL---------------- 300 (428)
T ss_pred HHHHHHHHHHhcchhhhh--------hcccccccCCCCceEEEHHHHHHHHHHcCCCCCCcccc----------------
Confidence 467778888777655542 122333 5799999999999744 35544332211
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCcccchh--hh
Q psy9364 77 EVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RR 153 (156)
Q Consensus 77 ~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr 153 (156)
...++..+..++.+|+||+|||++++|| +|.++++|++++|||||++|.||||||+|++|+ ++
T Consensus 301 --------------~~~~E~~l~~~~~~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g~Ei~~g~~r~~~~~~l~ 366 (428)
T TIGR00458 301 --------------STEAEKALGEEMDGLYFITDWPTEIRPFYTMPDEDNPEISKSFDLMYRDLEISSGAQRIHLHDLLV 366 (428)
T ss_pred --------------chHHHHHHHHHhCCCEEEEeCchhcCcccccccCCCCCEEEEEEEEeCCeEEeeCchhcCCHHHHH
Confidence 1222333334456899999999999999 689999999999999999999999999999998 44
Q ss_pred hc
Q psy9364 154 RT 155 (156)
Q Consensus 154 ~r 155 (156)
+|
T Consensus 367 ~~ 368 (428)
T TIGR00458 367 ER 368 (428)
T ss_pred HH
Confidence 43
No 18
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.77 E-value=7.2e-19 Score=145.21 Aligned_cols=93 Identities=30% Similarity=0.360 Sum_probs=78.1
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|+++++.+.+.....+. ...++++.||+|+||.||+..+.
T Consensus 114 lv~~i~~~~~~~~~~~~~--------~~~~~~~~~~~rit~~ea~~~~~------------------------------- 154 (269)
T cd00669 114 LVRHLAREVLGVTAVTYG--------FELEDFGLPFPRLTYREALERYG------------------------------- 154 (269)
T ss_pred HHHHHHHHHhcccccccc--------ccccccCCCceEeeHHHHHHHhC-------------------------------
Confidence 466777777776555542 23467889999999999998653
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCC-CcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQV-MSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~-~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
.|+||+|||.. .++++|.++++|++++|||||++|.||||||+|+||+ |++|
T Consensus 155 ----------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~~ 209 (269)
T cd00669 155 ----------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGNGSSRLHDPDIQAEV 209 (269)
T ss_pred ----------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCEEEeeCchhcCCHHHHHHH
Confidence 79999999999 7777999999999999999999999999999999998 6655
No 19
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=99.77 E-value=2.3e-18 Score=155.01 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=55.2
Q ss_pred hhhcccCCcEEEecCCCC-----------CcccccccCCCCC---------ceeeeeeeecCEeeecCCcccchh--hhh
Q psy9364 97 FLEETCINPTFICDHPQV-----------MSPLAKWHRDHPG---------LTERFELFVMKKEEVLLFPAMRPE--RRR 154 (156)
Q Consensus 97 ~vEp~l~~PtFI~dyP~~-----------~spLAk~~~~~~~---------~~eRFELfi~G~ElaNgysELnDp--qr~ 154 (156)
++++++.+|+||+|||.. .+||++++++|+. +++||||++||+||+|||+|+||| |++
T Consensus 415 l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvlnG~ElggGs~rihd~~~Q~~ 494 (583)
T TIGR00459 415 LVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGVELGGGSIRIHDPEVQKK 494 (583)
T ss_pred CcCCCCceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEEeceEecceeEEeCCHHHHHH
Confidence 678888999999999996 9999999998888 999999999999999999999999 876
Q ss_pred c
Q psy9364 155 T 155 (156)
Q Consensus 155 r 155 (156)
+
T Consensus 495 ~ 495 (583)
T TIGR00459 495 V 495 (583)
T ss_pred H
Confidence 5
No 20
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=99.71 E-value=3.2e-17 Score=146.84 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHhhhcccCCcEEEec-CCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 85 TSARLLDKLVGEFLEETCINPTFICD-HPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 85 ~~~~ll~~lf~~~vEp~l~~PtFI~d-yP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
++....++++.++|++++..|+||+| ||.+++|| +|.++++|++++|||||++|.||+|||+|+||| |++|
T Consensus 416 dl~~~~E~~L~~~v~~~~~~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r 490 (550)
T PTZ00401 416 DINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRGEEISSGAQRIHDPDLLLAR 490 (550)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCCEEEccchhhcCCHHHHHHH
Confidence 44556667777888999999999998 99999997 799999999999999999999999999999999 6665
No 21
>PLN02850 aspartate-tRNA ligase
Probab=99.69 E-value=4.9e-17 Score=145.22 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=67.3
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccCCc-EEEecCCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCccc
Q psy9364 71 DLCVKHEVECPPPRTSARLLDKLVGEFLEETCINP-TFICDHPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAM 148 (156)
Q Consensus 71 ~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~P-tFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysEL 148 (156)
+++++.|++++...++....++++.++|++++..| +||+|||.+++|| ++.++++|++++|||||++|.||+|||+|+
T Consensus 382 ~~L~~~g~~~~~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G~EI~~G~qr~ 461 (530)
T PLN02850 382 QMLKEAGVEVDPLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRGEEIISGAQRV 461 (530)
T ss_pred HHHHHcCCCCCCCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhccccCCCCCeEEEEEEEeCCEEEeccceec
Confidence 33344444443333455667777888888888866 5678999999999 789999999999999999999999999999
Q ss_pred chh--hhhc
Q psy9364 149 RPE--RRRT 155 (156)
Q Consensus 149 nDp--qr~r 155 (156)
||| +++|
T Consensus 462 ~d~~~l~~r 470 (530)
T PLN02850 462 HDPELLEKR 470 (530)
T ss_pred CCHHHHHHH
Confidence 999 5554
No 22
>PRK06462 asparagine synthetase A; Reviewed
Probab=99.68 E-value=9.4e-17 Score=136.23 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=79.2
Q ss_pred hHHHHHHHhcCCcE--EEecCCCCCCCCCeEecCCCCceeeeHHHHHH--HHhCCCCCCCCCCChHHHHHHHHHHHHHcC
Q psy9364 2 HVQGMVKSTHGSYK--VTYHPDGPESGSPVEIDFTPPFRRLHMFPALE--AALGVKLPNPTEFDTPEANKFLSDLCVKHE 77 (156)
Q Consensus 2 ~l~~~~~~~~g~~~--i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~--~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~ 77 (156)
+|+++++.+.++.+ +.+. + ....+|+.||+|+||.||++ +..|++...
T Consensus 150 lv~~i~~~~~~~~~~~i~~~------~-~~~~~~~~p~~rit~~eA~~~l~~~~~~~~~--------------------- 201 (335)
T PRK06462 150 LIKYLVKELLEEHEDELEFF------G-RDLPHLKRPFKRITHKEAVEILNEEGCRGID--------------------- 201 (335)
T ss_pred HHHHHHHHHHhhhHHHHHhc------C-CccccCCCCCeEEEHHHHHHHHHhcCCCcch---------------------
Confidence 45667776665543 2221 1 12245788999999999998 445554211
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccc-cccCCCCCceeeeeeee--cCEeeecCCcccchh
Q psy9364 78 VECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLA-KWHRDHPGLTERFELFV--MKKEEVLLFPAMRPE 151 (156)
Q Consensus 78 i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLA-k~~~~~~~~~eRFELfi--~G~ElaNgysELnDp 151 (156)
++.++..++.+++..+.+||||+|||++++|+. |.++++|++++|||||| ++-||++|..+.++.
T Consensus 202 ---------~~~l~~~~E~~l~~~~~~p~fi~~yP~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~ 269 (335)
T PRK06462 202 ---------LEELGSEGEKSLSEHFEEPFWIIDIPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEY 269 (335)
T ss_pred ---------HHHHhHHHHHHHHHHhCCCEEEECCChhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCH
Confidence 112233444444444468999999999999995 56788999999999999 778999999888886
No 23
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=99.56 E-value=2.7e-15 Score=131.94 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=45.3
Q ss_pred cCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCE-eeecCCcccchh
Q psy9364 102 CINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKK-EEVLLFPAMRPE 151 (156)
Q Consensus 102 l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~-ElaNgysELnDp 151 (156)
+.+|+||+|||.+++||++...++|++++|||||++|+ ||+||+.+++|+
T Consensus 337 ~~~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~ 387 (453)
T TIGR00457 337 FKPPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDL 387 (453)
T ss_pred CCCCEEEECCCcccChhhcccCCCcCceeeeeeccCCceEEeehhccCCCH
Confidence 45899999999999999864448999999999999996 999999999998
No 24
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=99.54 E-value=1.2e-14 Score=127.62 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=38.5
Q ss_pred cccCCcEEEecCCCCCcccc-cccCCCCCceeeeeeeecCE-eeecCCcccch
Q psy9364 100 ETCINPTFICDHPQVMSPLA-KWHRDHPGLTERFELFVMKK-EEVLLFPAMRP 150 (156)
Q Consensus 100 p~l~~PtFI~dyP~~~spLA-k~~~~~~~~~eRFELfi~G~-ElaNgysELnD 150 (156)
+++.+|+||+|||++++||+ |.++++ ++++||||+++|. ||++|..+.++
T Consensus 332 ~~~~~pvfI~~yP~~~~pfy~~~~~~~-~~~~~fdLl~~g~~El~~g~~r~~~ 383 (450)
T PRK03932 332 EHFKKPVFVTNYPKDIKAFYMRLNPDG-KTVAAMDLLAPGIGEIIGGSQREER 383 (450)
T ss_pred HhcCCcEEEECCCcccCcccCcCCCCC-CEEEEEEEEcCCCceeCCHHHHhhh
Confidence 46778999999999999998 677767 9999999976552 55554444444
No 25
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=99.54 E-value=8e-15 Score=121.76 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=59.1
Q ss_pred cCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEec-
Q psy9364 32 DFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICD- 110 (156)
Q Consensus 32 d~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~d- 110 (156)
+++.||+|+||.||++.+ |+++.+..++.. +.+....+ +++|+++
T Consensus 126 ~~~~p~~rity~eA~~~~-~~~~~~~~d~~~-----------------~~~~~~~~----------------~~~~~~~p 171 (280)
T cd00777 126 ELTTPFPRMTYAEAMERY-GFKFLWIVDFPL-----------------FEWDEEEG----------------RLVSAHHP 171 (280)
T ss_pred CCCCCCceeeHHHHHHHh-CCCCccccCCcc-----------------cCChhHHH----------------HHHHHhCC
Confidence 356899999999999986 655544322110 00000001 2233333
Q ss_pred CCCC---CcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 111 HPQV---MSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 111 yP~~---~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
||.. .+||++.++++ ++++|||||++|.||||||+|+||| |++|
T Consensus 172 f~~~~~~~~~~~~~~~~~-~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r 220 (280)
T cd00777 172 FTAPKEEDLDLLEKDPED-ARAQAYDLVLNGVELGGGSIRIHDPDIQEKV 220 (280)
T ss_pred CcCCCcccchhhhcCCcc-CeeEEEEEEeCCEEEccCEEEcCCHHHHHHH
Confidence 3433 35588887777 8999999999999999999999999 6655
No 26
>PLN02221 asparaginyl-tRNA synthetase
Probab=99.46 E-value=1.8e-13 Score=123.27 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=63.8
Q ss_pred CCCCceeeeHHHHHHHHh-----CCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhccc-CCcE
Q psy9364 33 FTPPFRRLHMFPALEAAL-----GVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETC-INPT 106 (156)
Q Consensus 33 ~~~pf~rit~~ea~~~~~-----Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l-~~Pt 106 (156)
++.||+|+||.||++... |.++. ....|+.-+...++.++...+ .+|+
T Consensus 407 ~~~pf~RIty~EAi~~L~~~~~~g~~~~--------------------------~~~~~G~dl~~e~Er~L~~~~~~~pv 460 (572)
T PLN02221 407 ASTPFGRITYTEAIELLEEAVAKGKEFD--------------------------NNVEWGIDLASEHERYLTEVLFQKPL 460 (572)
T ss_pred cCCCceEEEHHHHHHHHHhhhhcCCCCC--------------------------CCcchhhhhhHHHHHHHHHHhcCCcE
Confidence 678999999999998642 22221 111244445555666666664 4899
Q ss_pred EEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh
Q psy9364 107 FICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE 151 (156)
Q Consensus 107 FI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp 151 (156)
||+|||.+++||++..++++.+++|||||+.| |.|++|+
T Consensus 461 fv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g------~~El~~g 499 (572)
T PLN02221 461 IVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPK------VGELIGG 499 (572)
T ss_pred EEEcCChhhCcccccCCCCCceEEEEEEecCC------ceEECCH
Confidence 99999999999998777788899999999997 5555555
No 27
>PLN02603 asparaginyl-tRNA synthetase
Probab=99.38 E-value=1.1e-12 Score=118.07 Aligned_cols=130 Identities=14% Similarity=0.139 Sum_probs=89.4
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|+++++.+.++. ..+++|..+|.+.++.+.+....+.++.. ++-.++ .+++++.+.+..
T Consensus 367 ~l~~~~~~v~~~~-------------~~el~~~~~~~~~~~~~~l~~~~~~~f~r---ity~EA----i~iL~~~~~~~~ 426 (565)
T PLN02603 367 YLQYVVKYILENC-------------KEDMEFFNTWIEKGIIDRLSDVVEKNFVQ---LSYTDA----IELLLKAKKKFE 426 (565)
T ss_pred HHHHHHHHHHccc-------------HhHHHhcCCcccccHHHHHHHhcCCCCCC---CCHHHH----HHHHHHhccccC
Confidence 4677888877652 23577777777778888887777766554 332333 334444333332
Q ss_pred CCCCHHHHHHHHHHHhhhcccC--CcEEEecCCCCCcccccccCCCCCceeeeeeeecCE-eeecCCcccchh
Q psy9364 82 PPRTSARLLDKLVGEFLEETCI--NPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKK-EEVLLFPAMRPE 151 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~--~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~-ElaNgysELnDp 151 (156)
....|+.-++...+.++...+. +|+||+|||.+++||++...+++.++++|||++.|. ||++|-++.++.
T Consensus 427 ~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDLl~p~~gEl~gGsqRe~r~ 499 (565)
T PLN02603 427 FPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERL 499 (565)
T ss_pred CCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEEEecCceEecCHHHHHhhH
Confidence 2234555555666666665552 799999999999999998888899999999999764 888887776665
No 28
>PLN02532 asparagine-tRNA synthetase
Probab=99.34 E-value=1.7e-12 Score=117.84 Aligned_cols=125 Identities=13% Similarity=0.144 Sum_probs=77.0
Q ss_pred hHHHHHHHhcCC--cEEEecCCCCCC--CCCeEecCCCCceeeeHHHHHHHHh---CCCCCCCCCCChHHHHHHHHHHHH
Q psy9364 2 HVQGMVKSTHGS--YKVTYHPDGPES--GSPVEIDFTPPFRRLHMFPALEAAL---GVKLPNPTEFDTPEANKFLSDLCV 74 (156)
Q Consensus 2 ~l~~~~~~~~g~--~~i~~~~~~~~~--~~~~~id~~~pf~rit~~ea~~~~~---Gid~~~~~~~~~~~~~~~l~~~~~ 74 (156)
+|+++++.+.+. ..+.+-..+.+. ..-.++++++||+||||.||++.+. |.++....
T Consensus 435 lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~---------------- 498 (633)
T PLN02532 435 YFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKP---------------- 498 (633)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccccc----------------
Confidence 467788887765 333332000000 0001356788999999999997542 32221100
Q ss_pred HcCCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCE-eeecCCcccchh
Q psy9364 75 KHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKK-EEVLLFPAMRPE 151 (156)
Q Consensus 75 ~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~-ElaNgysELnDp 151 (156)
+.|.++.. ..++.+ . +..+.+|+||+|||.+++||++...+++.+++||||++.|. ||++|-...++.
T Consensus 499 ~~g~dL~~--e~Er~L---~----~~~~~~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~ 567 (633)
T PLN02532 499 EWGIALTT--EHLSYL---A----DEIYKKPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERM 567 (633)
T ss_pred ccCCccCh--HHHHHH---H----HHHcCCCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHH
Confidence 01111110 012211 1 11124899999999999999887777899999999999864 999998888776
No 29
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=99.10 E-value=5.5e-10 Score=100.99 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=46.2
Q ss_pred HHhhhccc-CCcEEEecCCCCCcccccccCCCCCceeeeeeeecCE-eeecCCcccchh
Q psy9364 95 GEFLEETC-INPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKK-EEVLLFPAMRPE 151 (156)
Q Consensus 95 ~~~vEp~l-~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~-ElaNgysELnDp 151 (156)
+.++...+ .+|+||+|||.+++||++...+++..+++|||++.|. ||++|-.+.++.
T Consensus 462 Er~L~~~~~~~PvFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~ 520 (586)
T PTZ00425 462 ERFVAEQIFKKPVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNL 520 (586)
T ss_pred HHHHHHHhcCCcEEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccH
Confidence 33344443 4799999999999999876556668889999999984 999999888886
No 30
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.3e-09 Score=95.35 Aligned_cols=89 Identities=21% Similarity=0.304 Sum_probs=70.3
Q ss_pred CCCceeeeHHHHHHHHh--CCC-CCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEec
Q psy9364 34 TPPFRRLHMFPALEAAL--GVK-LPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICD 110 (156)
Q Consensus 34 ~~pf~rit~~ea~~~~~--Gid-~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~d 110 (156)
+.||+|+||.||++... |.+ +.+++|++++ .++.+.+-+. ..|+||+|
T Consensus 276 ~~pf~ritY~eAieiL~~~~~e~~~~GdDl~~e----------------------~Er~l~e~~~-------~~~vfv~~ 326 (435)
T COG0017 276 SAPFPRITYKEAIEILEEKGFEKVEWGDDLGTE----------------------HERYLGEEYF-------KPPVFVTN 326 (435)
T ss_pred cCCccEEEHHHHHHHHHhcCCcccCCCCccCCH----------------------HHHHHHHHhC-------CCcEEEEe
Confidence 46899999999999986 444 4555555442 2444431111 14799999
Q ss_pred CCCCCccc-ccccCCCCCceeeeeeeecC-EeeecCCcccchh
Q psy9364 111 HPQVMSPL-AKWHRDHPGLTERFELFVMK-KEEVLLFPAMRPE 151 (156)
Q Consensus 111 yP~~~spL-Ak~~~~~~~~~eRFELfi~G-~ElaNgysELnDp 151 (156)
||.++.|+ .|.++++|+++.-|+|.+.| .||..|-++.+|.
T Consensus 327 yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~ 369 (435)
T COG0017 327 YPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDY 369 (435)
T ss_pred CcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccH
Confidence 99999999 78899999999999999999 9999999999997
No 31
>KOG0556|consensus
Probab=98.06 E-value=1e-05 Score=70.58 Aligned_cols=96 Identities=18% Similarity=0.282 Sum_probs=75.4
Q ss_pred EecCCCCceeeeHHHHHHHH--hCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcE
Q psy9364 30 EIDFTPPFRRLHMFPALEAA--LGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPT 106 (156)
Q Consensus 30 ~id~~~pf~rit~~ea~~~~--~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~Pt 106 (156)
.+-|-.|--|++|.|++.-. .|+.+...+|++++ .++.+..|. ..+.. ...
T Consensus 368 ~fkf~~~~lrl~~~e~v~mLreaGvE~g~~dDlsTe----------------------~Ek~LG~lV----~eky~tdfy 421 (533)
T KOG0556|consen 368 PFKFLEPPLRLTFKEGVAMLREAGVEMGDEDDLSTE----------------------SEKKLGQLV----REKYDTDFY 421 (533)
T ss_pred ccccCCCceEeehHHHHHHHHHcCcccCCccccCCh----------------------hHHHHHHHH----HHHhCCcEE
Confidence 34556777899999998765 58887766666654 245555553 33333 555
Q ss_pred EEecCCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCcccchh
Q psy9364 107 FICDHPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE 151 (156)
Q Consensus 107 FI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysELnDp 151 (156)
.+-+||.++.|+ .++.++||..+..|++|+.|-||-+|-++.+||
T Consensus 422 ildkyP~avRPFYTmpd~~~p~ySnSyD~fmRGeEIlSGAQRIhdp 467 (533)
T KOG0556|consen 422 ILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRGEEILSGAQRIHDP 467 (533)
T ss_pred EEccCccccccccccCCCCCCCcccchhheechhhhhccccccCCH
Confidence 666699999999 899999999999999999999999999999999
No 32
>KOG0554|consensus
Probab=97.69 E-value=0.00012 Score=63.63 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=39.9
Q ss_pred CCcEEEecCCCCCcccc-cccCCCCCceeeeeeeecCE-eeecCCcccchh
Q psy9364 103 INPTFICDHPQVMSPLA-KWHRDHPGLTERFELFVMKK-EEVLLFPAMRPE 151 (156)
Q Consensus 103 ~~PtFI~dyP~~~spLA-k~~~~~~~~~eRFELfi~G~-ElaNgysELnDp 151 (156)
..|+||+|||..+.|+- |.+++++ .+.-|+|-+-|+ ||+.|-.++-++
T Consensus 335 ~~PVfV~dYP~~iKpFYMr~n~~~~-tVaa~DlLVP~vGEliGGSlREe~~ 384 (446)
T KOG0554|consen 335 KKPVFVTDYPKGIKPFYMRLNDDGK-TVAAFDLLVPGVGELIGGSLREERK 384 (446)
T ss_pred CCCEEEEeccccccceEEEecCCCC-eeEEEEeecccchhhcCcccchhhH
Confidence 38999999999999995 4555555 778899999996 999998877765
No 33
>KOG0555|consensus
Probab=97.62 E-value=9.9e-05 Score=64.46 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=65.4
Q ss_pred CCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCC
Q psy9364 34 TPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQ 113 (156)
Q Consensus 34 ~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~ 113 (156)
+.||.|+.|.|||+=....|+...+..+- +.| .+..+.-.+.+. ..++.|+|++.||.
T Consensus 382 ~~PFkRm~Y~dAI~wLke~~vk~edg~~f------------efG------dDI~eAaER~mt----dtIg~PIfLtrFpv 439 (545)
T KOG0555|consen 382 KRPFKRMNYSDAIEWLKEHDVKKEDGTDF------------EFG------DDIPEAAERKMT----DTIGVPIFLTRFPV 439 (545)
T ss_pred CCchhcCCHHHHHHHHHhcCCcCccCccc------------ccc------cchhhHHHHhhh----hhcCCceEEeeccc
Confidence 46899999999998776555543221110 011 122233333333 34458999999999
Q ss_pred CCccc-ccccCCCCCceeeeeeeecCE-eeecCCcccchh
Q psy9364 114 VMSPL-AKWHRDHPGLTERFELFVMKK-EEVLLFPAMRPE 151 (156)
Q Consensus 114 ~~spL-Ak~~~~~~~~~eRFELfi~G~-ElaNgysELnDp 151 (156)
++.|+ .++..+||+++|.-++-.-|+ ||..|--+.-|.
T Consensus 440 eiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~ 479 (545)
T KOG0555|consen 440 EIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDS 479 (545)
T ss_pred cccceeeecccCccccceeeeeecCCccccccceeeeccH
Confidence 99999 667889999999999987764 777776665553
No 34
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.02 E-value=0.00041 Score=63.40 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=40.3
Q ss_pred CcEEEecCCCCC------------cccccccCC--------CC--CceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 104 NPTFICDHPQVM------------SPLAKWHRD--------HP--GLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 104 ~PtFI~dyP~~~------------spLAk~~~~--------~~--~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
.+.+|+|||.-- -|+++++++ || ..+++|||++||.||++|+.++||+ |+++
T Consensus 425 ~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~ng~E~~~gs~ri~~~~~q~~~ 500 (588)
T PRK00476 425 AFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGYELGGGSIRIHRPEIQEKV 500 (588)
T ss_pred eEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEEeeeeeccceEEeCCHHHHHHH
Confidence 688999999731 145444443 33 4689999999999999999999999 7664
No 35
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0058 Score=55.35 Aligned_cols=51 Identities=10% Similarity=0.013 Sum_probs=39.8
Q ss_pred ccCCcEEEecCCCCC------------cccccccCCCC---------CceeeeeeeecCEeeecCCcccchh
Q psy9364 101 TCINPTFICDHPQVM------------SPLAKWHRDHP---------GLTERFELFVMKKEEVLLFPAMRPE 151 (156)
Q Consensus 101 ~l~~PtFI~dyP~~~------------spLAk~~~~~~---------~~~eRFELfi~G~ElaNgysELnDp 151 (156)
....+++|+|||.-- -|+++++.++. ..+.-|+|.+||.||+.|--+.+||
T Consensus 421 ~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~ElggGSiRIh~~ 492 (585)
T COG0173 421 DQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGYELGGGSIRIHDP 492 (585)
T ss_pred ccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccEeeccceeeeCCH
Confidence 334799999999731 36666655432 2488899999999999999999999
No 36
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=95.40 E-value=0.012 Score=54.88 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=40.5
Q ss_pred CCcEEEecCCCC-----------CcccccccCC--------CC--CceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 103 INPTFICDHPQV-----------MSPLAKWHRD--------HP--GLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 103 ~~PtFI~dyP~~-----------~spLAk~~~~--------~~--~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
..+.+|+|||.- =-|++.++++ +| ..++-|+|++||.||++|..+.+|+ |++.
T Consensus 441 ~~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~ 516 (706)
T PRK12820 441 FHPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVVNGEELGGGSIRINDKDIQLRI 516 (706)
T ss_pred ceEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhccCChHHhhhheeeEEecceeeccceEEeCCHHHHHHH
Confidence 368899999983 1466555443 23 2478999999999999999999999 6653
No 37
>PLN02903 aminoacyl-tRNA ligase
Probab=95.29 E-value=0.013 Score=54.17 Aligned_cols=52 Identities=8% Similarity=0.071 Sum_probs=39.7
Q ss_pred CcEEEecCCCC------------CcccccccCCC-----CCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 104 NPTFICDHPQV------------MSPLAKWHRDH-----PGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 104 ~PtFI~dyP~~------------~spLAk~~~~~-----~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
.+.+|+|||.- =-|++.++++| ...+.-|+|.+||.||++|..+++|+ |+++
T Consensus 493 ~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlNG~EiggGS~Rih~~~~q~~~ 563 (652)
T PLN02903 493 SILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYNGVEIGGGSLRIYRRDVQQKV 563 (652)
T ss_pred eEEEEEeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEecceeeccceEecCCHHHHHHH
Confidence 68899999973 12454444433 23578999999999999999999999 7654
No 38
>KOG2411|consensus
Probab=90.98 E-value=0.28 Score=44.41 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=39.1
Q ss_pred CcEEEecCCCCC-------------cccccccCCC-------C--CceeeeeeeecCEeeecCCcccchh--hhh
Q psy9364 104 NPTFICDHPQVM-------------SPLAKWHRDH-------P--GLTERFELFVMKKEEVLLFPAMRPE--RRR 154 (156)
Q Consensus 104 ~PtFI~dyP~~~-------------spLAk~~~~~-------~--~~~eRFELfi~G~ElaNgysELnDp--qr~ 154 (156)
...+|+|||.-. -|+..+|++| | -...-|+|.+||.||+.|--+.+|| ||-
T Consensus 465 ~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGvElGGGSiRIhn~diQr~ 539 (628)
T KOG2411|consen 465 SFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGVELGGGSIRIHNPDIQRY 539 (628)
T ss_pred eEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccEeecCceeEecCHHHHHH
Confidence 567999999752 2555555544 2 2467899999999999999999999 763
No 39
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=78.46 E-value=2 Score=39.64 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=19.1
Q ss_pred cCCCCceeeeHHHHHHHHhCCCCC
Q psy9364 32 DFTPPFRRLHMFPALEAALGVKLP 55 (156)
Q Consensus 32 d~~~pf~rit~~ea~~~~~Gid~~ 55 (156)
+++.||+|+||.||+++| |.|-+
T Consensus 266 ~~~~pf~r~ty~ea~~~y-g~dkP 288 (588)
T PRK00476 266 DLPTPFPRMTYAEAMRRY-GSDKP 288 (588)
T ss_pred cCCCCceEEEHHHHHHHH-CCCCC
Confidence 457899999999999987 66644
No 40
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=77.63 E-value=5 Score=24.00 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhh
Q psy9364 66 NKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLE 99 (156)
Q Consensus 66 ~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vE 99 (156)
..+|+++|++.||+-...+...+++..+.....+
T Consensus 7 ~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~q~~ 40 (43)
T PF07498_consen 7 LSELREIAKELGIEGYSKMRKQELIFAILKAQAE 40 (43)
T ss_dssp HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHH
Confidence 5789999999999877788899999998776544
No 41
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=77.56 E-value=6.4 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCCCCCCC-CHHHHHHHHHH
Q psy9364 67 KFLSDLCVKHEVECPPPR-TSARLLDKLVG 95 (156)
Q Consensus 67 ~~l~~~~~~~~i~~~~~~-~~~~ll~~lf~ 95 (156)
+.|+..++++||..++.. +.++|++.+-+
T Consensus 7 ~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 678999999999998876 89998887643
No 42
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=76.24 E-value=2.2 Score=40.23 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.4
Q ss_pred ecCCCCceeeeHHHHHHHHhCCCC
Q psy9364 31 IDFTPPFRRLHMFPALEAALGVKL 54 (156)
Q Consensus 31 id~~~pf~rit~~ea~~~~~Gid~ 54 (156)
+++..||+|+||.||+.+| |.|=
T Consensus 279 ~~~~~pf~r~ty~eA~~~y-G~DK 301 (706)
T PRK12820 279 IALPRPFPRMPYAEAMDTT-GSDR 301 (706)
T ss_pred cCCCCCceEEEHHHHHHHh-CCCC
Confidence 4678899999999999999 6653
No 43
>PLN02903 aminoacyl-tRNA ligase
Probab=64.60 E-value=6.1 Score=36.99 Aligned_cols=20 Identities=25% Similarity=0.379 Sum_probs=17.3
Q ss_pred ecCCCCceeeeHHHHHHHHh
Q psy9364 31 IDFTPPFRRLHMFPALEAAL 50 (156)
Q Consensus 31 id~~~pf~rit~~ea~~~~~ 50 (156)
+++..||+|+||.||+.+|.
T Consensus 328 ~~~~~PF~rity~eA~~~yg 347 (652)
T PLN02903 328 VQLPNPFPRLTYAEAMSKYG 347 (652)
T ss_pred CCCCCCceEEEHHHHHHHHc
Confidence 45668999999999999975
No 44
>KOG2411|consensus
Probab=58.21 E-value=7.1 Score=35.69 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.3
Q ss_pred EecCCCCceeeeHHHHHHHHhCCC
Q psy9364 30 EIDFTPPFRRLHMFPALEAALGVK 53 (156)
Q Consensus 30 ~id~~~pf~rit~~ea~~~~~Gid 53 (156)
.|.+..||+||||.+|...| |.|
T Consensus 302 ~~~l~~PF~riTY~~Am~~Y-G~D 324 (628)
T KOG2411|consen 302 GIQLPVPFPRITYADAMDKY-GSD 324 (628)
T ss_pred CCCCCCCcccccHHHHHHHh-CCC
Confidence 35678999999999999998 554
No 45
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=53.22 E-value=16 Score=21.15 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHH
Q psy9364 67 KFLSDLCVKHEVECPPPRTSARLLDK 92 (156)
Q Consensus 67 ~~l~~~~~~~~i~~~~~~~~~~ll~~ 92 (156)
.+|+.+..++||+.+.....++++..
T Consensus 7 ~~Lk~iL~~~~I~~ps~AkKaeLv~L 32 (35)
T PF12949_consen 7 AQLKRILDEHGIEFPSNAKKAELVAL 32 (35)
T ss_dssp HHHHHHHHHHT---SSS--SHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 67899999999999887777776654
No 46
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=35.19 E-value=72 Score=23.43 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=21.1
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 73 CVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 73 ~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
.++.+... ...+.+++++.+.++ |.|+ .|.++.+
T Consensus 64 ~k~L~~~~-~~ls~~e~i~ll~~~---P~LikRPIv~~~ 98 (132)
T PRK13344 64 AKALDCDI-EELSVNEVIDLIQEN---PRILKSPILIDD 98 (132)
T ss_pred HHhCCcch-hcCCHHHHHHHHHhC---ccceeCcEEEeC
Confidence 34455443 345667788877764 7776 7877643
No 47
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=33.08 E-value=55 Score=22.51 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=23.4
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 73 CVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 73 ~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
.++.+......++.+++++.|..+ |.|+ +|..|.+
T Consensus 63 ~~~l~~~~~~~ls~~e~~~~l~~~---p~LikRPii~~~ 98 (105)
T cd02977 63 YRKLGLADKDELSDEEALELMAEH---PKLIKRPIVVDG 98 (105)
T ss_pred HHHcCCccccCCCHHHHHHHHHhC---cCeeeCCEEEEC
Confidence 345555433467778888888764 7776 7887764
No 48
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=32.76 E-value=96 Score=17.41 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Q psy9364 66 NKFLSDLCVKHEVECPPPRTSARLLDKLVG 95 (156)
Q Consensus 66 ~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~ 95 (156)
..+|++.|++.|++.... ..+++++|-+
T Consensus 6 v~eLk~~l~~~gL~~~G~--K~~Li~Rl~~ 33 (35)
T PF02037_consen 6 VAELKEELKERGLSTSGK--KAELIERLKE 33 (35)
T ss_dssp HHHHHHHHHHTTS-STSS--HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCC--HHHHHHHHHH
Confidence 467999999999987643 6778888754
No 49
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=30.65 E-value=48 Score=30.78 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=14.1
Q ss_pred CCCCceeeeHHHHHHHH
Q psy9364 33 FTPPFRRLHMFPALEAA 49 (156)
Q Consensus 33 ~~~pf~rit~~ea~~~~ 49 (156)
+..||+||||.||++..
T Consensus 424 ~~~pf~rIty~EAi~iL 440 (586)
T PTZ00425 424 LDEDFAKITYTNVIDLL 440 (586)
T ss_pred cCCCCCcCCHHHHHHHH
Confidence 35799999999998764
No 50
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=25.77 E-value=2.5e+02 Score=20.99 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCCCC------CCCHHHHHHHHHHHhhhccc-CCcEEEec
Q psy9364 67 KFLSDLCVKHEVECPP------PRTSARLLDKLVGEFLEETC-INPTFICD 110 (156)
Q Consensus 67 ~~l~~~~~~~~i~~~~------~~~~~~ll~~lf~~~vEp~l-~~PtFI~d 110 (156)
+.|.+++++.|++... +......+..-.....+-.+ +-||||.|
T Consensus 132 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~vv~ 182 (201)
T cd03024 132 DVLVDLAEEAGLDAAEARAVLASDEYADEVRADEARARQLGISGVPFFVFN 182 (201)
T ss_pred HHHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHHHCCCCcCCEEEEC
Confidence 5688899999986431 11223344444444444333 37999997
No 51
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.11 E-value=1.6e+02 Score=24.62 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=46.2
Q ss_pred ceeeeHHHHHHHHhCCCCC--CC-CCCChHHHHHHHHHHHHHcCCC----CCCC--CCHHHHHHHHHHHhhhcccCCcEE
Q psy9364 37 FRRLHMFPALEAALGVKLP--NP-TEFDTPEANKFLSDLCVKHEVE----CPPP--RTSARLLDKLVGEFLEETCINPTF 107 (156)
Q Consensus 37 f~rit~~ea~~~~~Gid~~--~~-~~~~~~~~~~~l~~~~~~~~i~----~~~~--~~~~~ll~~lf~~~vEp~l~~PtF 107 (156)
=+|....+...+..+-.++ .+ ...++.++ -.+.+.|++.|++ +++. ....+-+-..|....+.. .-|.+
T Consensus 57 eEr~~v~~~~v~~~~grvpviaG~g~~~t~ea-i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~-~lPvi 134 (299)
T COG0329 57 EERKEVLEAVVEAVGGRVPVIAGVGSNSTAEA-IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV-DLPVI 134 (299)
T ss_pred HHHHHHHHHHHHHHCCCCcEEEecCCCcHHHH-HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhc-CCCEE
Confidence 4566667777777654322 11 12345554 3577888899976 3332 122445556666655654 78999
Q ss_pred EecCCCC
Q psy9364 108 ICDHPQV 114 (156)
Q Consensus 108 I~dyP~~ 114 (156)
|||+|..
T Consensus 135 lYN~P~~ 141 (299)
T COG0329 135 LYNIPSR 141 (299)
T ss_pred EEeCccc
Confidence 9999964
No 52
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=24.96 E-value=88 Score=22.05 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 74 VKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 74 ~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
++.++.. ...+.+++++.|.++ |.|+ +|..+.+
T Consensus 64 ~~l~~~~-~~ls~~e~i~ll~~~---P~LikRPIi~~~ 97 (112)
T cd03034 64 KELGLAD-PELSDEELIDAMAAH---PILIERPIVVTG 97 (112)
T ss_pred HHcCCCc-cCCCHHHHHHHHHhC---cCcccCCEEEEC
Confidence 4445443 356677888888764 7776 7877653
No 53
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=24.66 E-value=1.1e+02 Score=21.51 Aligned_cols=34 Identities=9% Similarity=0.192 Sum_probs=21.6
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 73 CVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 73 ~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
.++.++.. ...+..++++.+.. .|.|+ +|..+.+
T Consensus 64 ~k~l~~~~-~~ls~~e~i~~l~~---~p~LikRPii~~~ 98 (115)
T cd03032 64 FKNLNIDI-DELSLSELIRLISE---HPSLLRRPIIIDE 98 (115)
T ss_pred HHHcCCCc-ccCCHHHHHHHHHh---ChhheeCCEEEeC
Confidence 34445443 34566778888876 37776 7887754
No 54
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.94 E-value=2.2e+02 Score=23.35 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=41.3
Q ss_pred eeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCC----CCCCC---CHHHHHHHHHHHhhhcccCCcEEEec
Q psy9364 38 RRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVE----CPPPR---TSARLLDKLVGEFLEETCINPTFICD 110 (156)
Q Consensus 38 ~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~----~~~~~---~~~~ll~~lf~~~vEp~l~~PtFI~d 110 (156)
+|..+.++..+..|-=+......+++++ -++.+.|++.|.+ .++.. ...+-+-..|....+ .-|.+|||
T Consensus 53 Er~~l~~~~~~~~~~vi~gvg~~~~~~a-i~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~---~lpv~iYn 128 (279)
T cd00953 53 EKLELLKAYSDITDKVIFQVGSLNLEES-IELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIYN 128 (279)
T ss_pred HHHHHHHHHHHHcCCEEEEeCcCCHHHH-HHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh---cCCEEEEe
Confidence 4555666666655421111112345443 3456677888865 23321 124566677777667 56999999
Q ss_pred CCC
Q psy9364 111 HPQ 113 (156)
Q Consensus 111 yP~ 113 (156)
+|.
T Consensus 129 ~P~ 131 (279)
T cd00953 129 YPK 131 (279)
T ss_pred Ccc
Confidence 996
No 55
>PRK12559 transcriptional regulator Spx; Provisional
Probab=22.02 E-value=1.4e+02 Score=21.78 Aligned_cols=33 Identities=3% Similarity=0.112 Sum_probs=21.0
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEe
Q psy9364 73 CVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFIC 109 (156)
Q Consensus 73 ~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~ 109 (156)
.++.+++. ...+.+++++.+.++ |.|+ +|.++.
T Consensus 64 ~k~l~~~~-~~ls~~e~i~ll~~~---P~LikRPIi~~ 97 (131)
T PRK12559 64 FQDLNINI-EELSLNEFYKLIIEH---PLMLRRPIMLD 97 (131)
T ss_pred HHhCCCCc-ccCCHHHHHHHHHhC---cceEeCCEEEe
Confidence 34555544 345667788888764 7776 787664
No 56
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=21.95 E-value=1.4e+02 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=20.9
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEe
Q psy9364 73 CVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFIC 109 (156)
Q Consensus 73 ~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~ 109 (156)
.++.++.. ...+..++++.+.++ |.|+ +|.++.
T Consensus 64 ~k~l~~~~-~~ls~~e~i~ll~~~---p~LikRPIi~~ 97 (131)
T PRK01655 64 FQKLNVDV-ESLSLQDLIKLISDN---PGLLRRPIIID 97 (131)
T ss_pred HHhCCCCc-ccCCHHHHHHHHHhC---cceEeCCEEEE
Confidence 34445443 345667788888764 7776 787764
No 57
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=21.79 E-value=1.9e+02 Score=17.27 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q psy9364 42 MFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKL 93 (156)
Q Consensus 42 ~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~l 93 (156)
+.+.|.+.+|+++... ...-....|...+...|++ +.++.++.|
T Consensus 8 ~~~~i~~~~Gi~l~~~---K~~~l~rRl~~rm~~~~~~-----~~~~y~~~L 51 (57)
T PF03705_consen 8 FRELIYRRTGIDLSEY---KRSLLERRLARRMRALGLP-----SFAEYYELL 51 (57)
T ss_dssp HHHHHHHHH-----GG---GHHHHHHHHHHHHHHHT--------HHHHHHHH
T ss_pred HHHHHHHHHCCCCchh---hHHHHHHHHHHHHHHcCCC-----CHHHHHHHH
Confidence 5678888899998753 2112234566677777764 456666655
No 58
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=21.09 E-value=1.8e+02 Score=20.40 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 83 PRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 83 ~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
..+..++++.+.+ .|.|+ +|.++.+
T Consensus 74 ~~s~~e~~~~l~~---~p~LikRPIi~~~ 99 (111)
T cd03036 74 SLSEEEALELLSS---DGMLIKRPFVVDD 99 (111)
T ss_pred cCCHHHHHHHHHh---CcCeeeCCEEEeC
Confidence 3456677777765 47776 7888865
No 59
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=20.86 E-value=3.1e+02 Score=19.27 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=21.0
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 73 CVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 73 ~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
.++.++.. ...+..++++.|..+ |.|+ +|.++.+
T Consensus 64 ~~~l~~~~-~~ls~~e~i~~l~~~---P~LikRPIi~~~ 98 (114)
T TIGR00014 64 YKELGLSD-PNLSDQELLDAMVAH---PILLERPIVVAG 98 (114)
T ss_pred HHHcCCCc-cCCCHHHHHHHHHHC---cCcccCCeEEEC
Confidence 34445443 245667788877654 7776 7877754
No 60
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=20.35 E-value=3.2e+02 Score=19.35 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 83 PRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 83 ~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
..+.+++++.+.++ |.|+ +|.++.+
T Consensus 71 ~ls~~e~~~ll~~~---P~LikRPIv~~~ 96 (113)
T cd03033 71 ALDEEEALALMIAD---PLLIRRPLMQVG 96 (113)
T ss_pred CCCHHHHHHHHHhC---cceeeCCeEEEC
Confidence 45667788877764 7777 7887643
No 61
>PF11630 DUF3254: Protein of unknown function (DUF3254); InterPro: IPR024509 Anti-lipopolysaccharide factor binds to bacterial LPS and may specifically inhibit the LPS-mediated activation of the hemolymph coagulation. It has a strong antibacterial effect, especially on the growth of Gram-negative bacteria [,]. This entry also includes the antibacterial protein Scygonadin, which has antibacterial activity against the Gram-positive bacterium Micrococcus luteus [].; PDB: 2JOB_A.
Probab=20.18 E-value=55 Score=23.44 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=15.9
Q ss_pred ceeeeeeeecCEeeecCCcc
Q psy9364 128 LTERFELFVMKKEEVLLFPA 147 (156)
Q Consensus 128 ~~eRFELfi~G~ElaNgysE 147 (156)
-..|||||+.|.==|.|++-
T Consensus 40 ~~kr~ely~~g~~wCPGWT~ 59 (100)
T PF11630_consen 40 KIKRWELYYKGKMWCPGWTP 59 (100)
T ss_dssp EEETTEEEEEEEEE-BTTBS
T ss_pred ceeeeeEEEEEEEEcCCccc
Confidence 45799999999988888873
Done!