Query psy9364
Match_columns 156
No_of_seqs 119 out of 1052
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:14:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bju_A Lysyl-tRNA synthetase; 100.0 5.1E-35 1.7E-39 258.6 16.7 153 2-155 289-443 (521)
2 4ex5_A Lysine--tRNA ligase; st 100.0 2E-35 7E-40 261.3 12.4 141 2-156 317-464 (529)
3 3a74_A Lysyl-tRNA synthetase; 100.0 3.2E-32 1.1E-36 239.4 15.9 140 2-155 287-428 (493)
4 1e1o_A Lysyl-tRNA synthetase, 100.0 3.3E-32 1.1E-36 239.8 14.3 140 2-155 296-438 (504)
5 3a5y_A GENX, putative lysyl-tR 99.9 2.8E-26 9.5E-31 193.9 9.0 114 35-155 162-281 (345)
6 3nem_A Aspartyl-tRNA synthetas 99.9 4.4E-24 1.5E-28 185.4 6.8 121 2-155 250-378 (438)
7 3m4p_A Ehasnrs, asparaginyl-tR 99.9 1.5E-24 5.1E-29 189.1 -1.2 121 2-155 267-396 (456)
8 1wyd_A Hypothetical aspartyl-t 99.9 2.4E-22 8.1E-27 174.1 5.9 117 2-155 245-369 (429)
9 2xgt_A Asparaginyl-tRNA synthe 99.8 1.5E-22 5E-27 175.5 1.5 124 2-155 243-375 (435)
10 1n9w_A Aspartyl-tRNA synthetas 99.8 1.6E-21 5.6E-26 168.5 6.3 119 2-155 237-362 (422)
11 3i7f_A Aspartyl-tRNA synthetas 99.8 9.7E-21 3.3E-25 168.1 8.5 99 30-155 384-488 (548)
12 1x54_A Asparaginyl-tRNA synthe 99.8 2.8E-21 9.7E-26 167.5 4.7 116 2-155 246-374 (434)
13 1l0w_A Aspartyl-tRNA synthetas 99.8 3.1E-19 1.1E-23 159.5 9.9 67 88-155 402-493 (580)
14 1eov_A ASPRS, aspartyl-tRNA sy 99.8 1.5E-19 5.1E-24 158.7 7.4 100 30-155 318-425 (487)
15 1c0a_A Aspartyl tRNA synthetas 99.7 1.2E-17 4.1E-22 149.4 9.6 70 86-155 406-499 (585)
16 1nnh_A Asparaginyl-tRNA synthe 99.4 2.8E-13 9.7E-18 111.8 4.3 49 102-155 180-232 (294)
17 4ah6_A Aspartate--tRNA ligase, 97.9 1.8E-05 6.3E-10 71.1 6.5 53 103-155 437-513 (617)
18 4ah6_A Aspartate--tRNA ligase, 62.1 4.3 0.00015 36.4 2.7 20 31-50 271-290 (617)
19 3rdw_A Putative arsenate reduc 52.5 24 0.00081 24.4 4.8 35 72-110 69-104 (121)
20 1s3c_A Arsenate reductase; ARS 40.7 52 0.0018 23.2 5.2 32 74-109 67-99 (141)
21 12as_A Asparagine synthetase; 35.0 63 0.0022 26.7 5.4 45 104-149 194-257 (330)
22 3f0i_A Arsenate reductase; str 32.9 36 0.0012 23.3 3.1 33 74-110 70-103 (119)
23 3but_A Uncharacterized protein 26.8 26 0.00091 25.0 1.6 18 131-148 40-57 (136)
24 2job_A Antilipopolysaccharide 26.8 22 0.00075 24.5 1.1 21 128-148 41-61 (102)
25 3l78_A Regulatory protein SPX; 24.8 38 0.0013 23.1 2.1 34 73-110 64-98 (120)
26 2nsz_A Programmed cell death p 24.5 25 0.00086 24.6 1.1 44 67-113 85-128 (129)
27 2ld7_A Histone deacetylase com 22.3 1.8E+02 0.0062 19.4 6.0 32 67-98 30-61 (94)
28 3fz4_A Putative arsenate reduc 21.4 78 0.0027 21.6 3.2 24 84-110 79-103 (120)
No 1
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=258.62 Aligned_cols=153 Identities=67% Similarity=1.164 Sum_probs=137.6
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|+++++.++|+..+.|+..+++ +....+||+.||+|+||.||+++++|+++.+..+++++++.+.|.+++++.|+++.
T Consensus 289 li~~v~~~v~~~~~~~~~~~~~d-~~~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 367 (521)
T 3bju_A 289 MVSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECP 367 (521)
T ss_dssp HHHHHHHHHHSSSEEEECTTCTT-SCCEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCCceEEecccccc-cccceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCC
Confidence 68899999999999999755443 23458999999999999999999999998754456665566889999999999988
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
..++++++++++|+++||+++++||||+|||.++|||||.++++|++++||||||+|+||||||+||||| ||+|
T Consensus 368 ~~~~~~~~l~~~~e~~ve~~l~~P~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~r 443 (521)
T 3bju_A 368 PPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 443 (521)
T ss_dssp SCCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEECCccccCcccccCCCCCCeeeeEEEEEcceeeecChhhhCCHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999 8876
No 2
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=2e-35 Score=261.30 Aligned_cols=141 Identities=26% Similarity=0.358 Sum_probs=127.9
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhC-CCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALG-VKLPNPTEFDTPEANKFLSDLCVKHEVEC 80 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~G-id~~~~~~~~~~~~~~~l~~~~~~~~i~~ 80 (156)
+|+++++.++|+..+.|. +.++||++||+|+||.||++++.| +++.. +.+ .+.|.++++++|+++
T Consensus 317 li~~v~~~v~~~~~~~~~--------~~~id~~~pf~Rity~eAi~~~~~~~~~~~---~~~---~~~l~~~~~~~g~~~ 382 (529)
T 4ex5_A 317 LIRQAAVDALGTATIQYQ--------GRELDLAQPFHRLTITQAIQKYAPSYTDGQ---LSD---DAFLRSELKRLGVDV 382 (529)
T ss_dssp HHHHHHHHHHSCSEEEET--------TEEEETTSCCEEEEHHHHHHHHCTTSCHHH---HTC---HHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHhCcCceecC--------ceeeccCCCceEEEHHHHHHHHhCCCChhh---cCC---HHHHHHHHHHcCCCC
Confidence 688999999999999995 679999999999999999999998 55422 111 467889999999998
Q ss_pred CC----CCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhh
Q psy9364 81 PP----PRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRR 154 (156)
Q Consensus 81 ~~----~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~ 154 (156)
++ .++++++++++|+++||++|++||||+|||+++|||||.++++|++++||||||+|+||||||+||||| ||+
T Consensus 383 ~~~~~~~~~~g~l~~e~~~~~vE~~l~~P~FI~dyP~~~splak~~~~~p~~~~rFeL~i~G~EianG~~el~Dp~~q~~ 462 (529)
T 4ex5_A 383 TQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESDTVAGITERFELFITGREIANGFSELNDPEDQAA 462 (529)
T ss_dssp TSGGGTTCCHHHHHHHHHHHHTGGGCCSCEEEEEEEGGGCTTBCBCSSSTTEEEEEEEEETTEEEEEEEEBCCCHHHHHH
T ss_pred CCcccCCCCHHHHHHHHHHHHhccccCCCEEEECCchhhCCCcccCCCCCCceEEEEEEECCEEEecchhccCCHHHHHH
Confidence 87 789999999999999999999999999999999999999999999999999999999999999999999 887
Q ss_pred cC
Q psy9364 155 TL 156 (156)
Q Consensus 155 r~ 156 (156)
|+
T Consensus 463 rf 464 (529)
T 4ex5_A 463 RF 464 (529)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 3
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=99.98 E-value=3.2e-32 Score=239.38 Aligned_cols=140 Identities=31% Similarity=0.566 Sum_probs=128.5
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP 81 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 81 (156)
+|+++++.++|+..+.|. +..+||+.||+|+||.||++++.|+|++. +++ .+.+.++++++|+++.
T Consensus 287 ll~~l~~~v~~~~~i~~~--------~~~i~~~~pf~rity~eai~~~~~~d~~~--~~~----~~~~~~~~~~~g~~~~ 352 (493)
T 3a74_A 287 LIAHIATEVLGTTKIQYG--------EHLVDLTPEWRRLHMVDAIKEYVGVDFWR--QMS----DEEARELAKEHGVEVA 352 (493)
T ss_dssp HHHHHHHHHHSCSEEEET--------TEEEECCSSCEEEEHHHHHHHHTCCCTTS--CCC----HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCCceEeeC--------CEeeccCCCcceeeHHHHHHHHhCCCCcc--ccC----HHHHHHHHHHcCCCCC
Confidence 688999999999999995 57899999999999999999999988731 233 4678899999999988
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
+.++++++++++|+++||+++.+||||+|||.++|||||.++++|++++|||||++|+||||||+||||| ||+|
T Consensus 353 ~~~~~g~l~~~~~~~~ve~~~~~p~fv~dyP~~~~pf~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~r 428 (493)
T 3a74_A 353 PHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQR 428 (493)
T ss_dssp TTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHH
T ss_pred CCcChhHHHHHHHHHHhhcccCCcEEEECCCcccCCccCcCCCCCCeEEEEEEEeCCeEEecCcceeCCHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999 8776
No 4
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=99.98 E-value=3.3e-32 Score=239.83 Aligned_cols=140 Identities=25% Similarity=0.381 Sum_probs=128.2
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhC-CCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALG-VKLPNPTEFDTPEANKFLSDLCVKHEVEC 80 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~G-id~~~~~~~~~~~~~~~l~~~~~~~~i~~ 80 (156)
+|++++++++|+..+.|. +..+||+.||+|+||.||++++.| +|+... + ..+.+.+++++.|+++
T Consensus 296 li~~~~~~v~~~~~i~~~--------~~~i~~~~pf~rity~eAi~~~~~d~d~~~~---~---~~~~~~~~~~~~g~~~ 361 (504)
T 1e1o_A 296 LFRTLAQEVLGTTKVTYG--------EHVFDFGKPFEKLTMREAIKKYRPETDMADL---D---NFDAAKALAESIGITV 361 (504)
T ss_dssp HHHHHHHHHHSSSEEEET--------TEEEETTSCCEEEEHHHHHHHHSTTCCGGGG---G---SHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCceeeeC--------CEeeccCCCceEEeHHHHHHHHcCCCCcccc---C---CHHHHHHHHHHcCCCC
Confidence 688999999999999995 578999999999999999999999 776431 1 1467889999999998
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 81 PPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 81 ~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
.+.++++++++++|+++||+++.+||||+|||.++|||||.++++|++++|||||++|+||||||+||||| ||+|
T Consensus 362 ~~~~~~g~l~~~~~~~~ve~~~~~p~fV~dyP~~~~pf~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~r 438 (504)
T 1e1o_A 362 EKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAER 438 (504)
T ss_dssp CTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHH
T ss_pred CCCcCHhHHHHHHHHHHhhccCCCeEEEECCCcccCcCcCCCCCCCCceEEEEEEECCeEEccceeeeCCHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999 8776
No 5
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=99.93 E-value=2.8e-26 Score=193.89 Aligned_cols=114 Identities=20% Similarity=0.267 Sum_probs=85.1
Q ss_pred CCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCC-CCCC-CCHHHHHHHHHHHhhhccc--CCcEEEec
Q psy9364 35 PPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVE-CPPP-RTSARLLDKLVGEFLEETC--INPTFICD 110 (156)
Q Consensus 35 ~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~-~~~~-~~~~~ll~~lf~~~vEp~l--~~PtFI~d 110 (156)
.||+|+||.||+++++|+|.... + .+.+.+++++.|+. +... .+++.+++++|.+.||++| .+|+||+|
T Consensus 162 ~~~~rity~ea~~~~~g~d~~~~---~----~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~d 234 (345)
T 3a5y_A 162 PAAESLSYQQAFLRYLEIDPLSA---D----KTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYH 234 (345)
T ss_dssp CCCEEEEHHHHHHHHTCCCTTCC---C----------------------------HHHHHHHHHHTGGGSSSSSCEEEEC
T ss_pred CCCcEeeHHHHHHHHhCCCCCCC---C----HHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 38999999999999999986542 2 35577788888876 5544 5678899999999999999 48999999
Q ss_pred CCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 111 HPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 111 yP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
||.+++||+|.++++|.+++|||||++|+||||||+|+||| |++|
T Consensus 235 yP~~~~~~~~~~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~r 281 (345)
T 3a5y_A 235 FPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQR 281 (345)
T ss_dssp CBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHH
T ss_pred CChhhChhhCCCCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999999999999 7765
No 6
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=99.89 E-value=4.4e-24 Score=185.37 Aligned_cols=121 Identities=21% Similarity=0.203 Sum_probs=88.9
Q ss_pred hHHHHHHHhcCCcE--EEecCCCCCCCCCeEec-CCCCceeeeHHHHHHH--HhCCCCCCCCCCChHHHHHHHHHHHHHc
Q psy9364 2 HVQGMVKSTHGSYK--VTYHPDGPESGSPVEID-FTPPFRRLHMFPALEA--ALGVKLPNPTEFDTPEANKFLSDLCVKH 76 (156)
Q Consensus 2 ~l~~~~~~~~g~~~--i~~~~~~~~~~~~~~id-~~~pf~rit~~ea~~~--~~Gid~~~~~~~~~~~~~~~l~~~~~~~ 76 (156)
+|+++++.+.|... +.+. +..++ ++.||+|+||.||++. ..|+++.++.+++++
T Consensus 250 li~~~~~~v~~~~~~~l~~~--------~~~l~~~~~pf~rity~eai~~l~~~g~~~~~~~dl~~~------------- 308 (438)
T 3nem_A 250 LVAHAINYVREHNAKELDIL--------NFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTE------------- 308 (438)
T ss_dssp HHHHHHHHHHHHCHHHHHHT--------TCCCCCCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHH-------------
T ss_pred HHHHHHHHHHhhhhhhHhhc--------ccccccCCCCceEEEHHHHHHHHHHcCCCCCCCCCCCcH-------------
Confidence 56777777765432 2221 22333 5689999999999986 458777655444421
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCcccchh--hh
Q psy9364 77 EVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RR 153 (156)
Q Consensus 77 ~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr 153 (156)
.++++.+.+++ ....+||||+|||+++||| ||.++++|++++|||||++|+||||||+||||| |+
T Consensus 309 ---------~e~~l~~~~~~---~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G~Ei~nG~~el~d~~~l~ 376 (438)
T 3nem_A 309 ---------GERLLGKYMME---NENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILV 376 (438)
T ss_dssp ---------HHHHHHHHHHH---HHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETTEEEEEEEEBCCCHHHHH
T ss_pred ---------HHHHHHHHhhh---hcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECCEEEEeCeeecCCHHHHH
Confidence 13344444332 2345999999999999999 999999999999999999999999999999999 66
Q ss_pred hc
Q psy9364 154 RT 155 (156)
Q Consensus 154 ~r 155 (156)
+|
T Consensus 377 ~r 378 (438)
T 3nem_A 377 EQ 378 (438)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 7
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=99.88 E-value=1.5e-24 Score=189.13 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=91.2
Q ss_pred hHHHHHHHhcCCcEEEecCCCCCCCCCeEecC---CCCceeeeHHHHHHHH--hCCCCCCCCCCChHHHHHHHHHHHHHc
Q psy9364 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDF---TPPFRRLHMFPALEAA--LGVKLPNPTEFDTPEANKFLSDLCVKH 76 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~---~~pf~rit~~ea~~~~--~Gid~~~~~~~~~~~~~~~l~~~~~~~ 76 (156)
+|+++++.+.|+....+. ...+|| +.||+|+||.||++.. .|++...
T Consensus 267 li~~~~~~v~~~~~~~~~--------~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~-------------------- 318 (456)
T 3m4p_A 267 LVCTVIDNVMAVHGDKIR--------KMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD-------------------- 318 (456)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS--------------------
T ss_pred HHHHHHHHHhhhhhhhHh--------hcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc--------------------
Confidence 567777777765444332 123344 5799999999999854 3654321
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCccc-ccccCCCCCceeeeeeeecCE-eeecCCcccchh--h
Q psy9364 77 EVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL-AKWHRDHPGLTERFELFVMKK-EEVLLFPAMRPE--R 152 (156)
Q Consensus 77 ~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~-ElaNgysELnDp--q 152 (156)
...++++.++.+++.++++++.+||||+|||+++||| ||.+++||++++|||||++|+ ||||||+|+||+ |
T Consensus 319 -----~~~~~g~~l~~~~e~~l~~~~~~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l 393 (456)
T 3m4p_A 319 -----KPFEYGEDISEKPERQMTDEIGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDEL 393 (456)
T ss_dssp -----SCCCTTCCCCHHHHHHHHHHHTSCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHHH
T ss_pred -----cCcchHHHHHHHHHHHHHHHhCceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHHH
Confidence 0112344455667777777788999999999999996 999999999999999999996 999999999999 6
Q ss_pred hhc
Q psy9364 153 RRT 155 (156)
Q Consensus 153 r~r 155 (156)
++|
T Consensus 394 ~~r 396 (456)
T 3m4p_A 394 MGA 396 (456)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 8
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.86 E-value=2.4e-22 Score=174.06 Aligned_cols=117 Identities=24% Similarity=0.305 Sum_probs=86.3
Q ss_pred hHHHHHHHhcCC--cEEEecCCCCCCCCCeEecC-CCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHHHHHHHc
Q psy9364 2 HVQGMVKSTHGS--YKVTYHPDGPESGSPVEIDF-TPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLSDLCVKH 76 (156)
Q Consensus 2 ~l~~~~~~~~g~--~~i~~~~~~~~~~~~~~id~-~~pf~rit~~ea~~~~~--Gid~~~~~~~~~~~~~~~l~~~~~~~ 76 (156)
+++.+++++.|. ..+.|. +..+++ +.||+|+||.||++.+. |+++.+..+++.+
T Consensus 245 ll~~l~~~~~~~~~~~l~~~--------~~~~~~l~~pf~rity~eA~~~~~~~g~~~~~~~~l~~~------------- 303 (429)
T 1wyd_A 245 ILHNIVKTIKEEGKEELKIL--------NYEPPEVKIPIKRLKYTEAIEILRSKGYNIKFGDDIGTP------------- 303 (429)
T ss_dssp HHHHHHHHHHHHTHHHHHHH--------TCCCCCCCSSCEEEEHHHHHHHHHHSSCCCCTTSCCCHH-------------
T ss_pred HHHHHHHHHhccchhhhhhc--------ccccccCCCCccEEEHHHHHHHHHhcCCCcccCcccCcH-------------
Confidence 466777776653 233442 234554 68999999999999984 6655444333321
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCcccchh--hh
Q psy9364 77 EVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RR 153 (156)
Q Consensus 77 ~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr 153 (156)
.++++.+. +++ +|+||+|||.+++|| ||.++++|++++|||||++|+||||||+|+||| |+
T Consensus 304 ---------~e~~l~~~----~~~---~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~ 367 (429)
T 1wyd_A 304 ---------ELRILNEE----LKE---DLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLE 367 (429)
T ss_dssp ---------HHHHHHHH----HCC---SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHH
T ss_pred ---------HHHHHHHH----hcc---CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCEEEEeCeeeeCCHHHHH
Confidence 23333333 332 799999999999998 999999999999999999999999999999999 77
Q ss_pred hc
Q psy9364 154 RT 155 (156)
Q Consensus 154 ~r 155 (156)
+|
T Consensus 368 ~r 369 (429)
T 1wyd_A 368 EA 369 (429)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 9
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=99.84 E-value=1.5e-22 Score=175.55 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=88.3
Q ss_pred hHHHHHHHhcCCcEEE--ecCCCCCCCCCeEecCC---CCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHc
Q psy9364 2 HVQGMVKSTHGSYKVT--YHPDGPESGSPVEIDFT---PPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKH 76 (156)
Q Consensus 2 ~l~~~~~~~~g~~~i~--~~~~~~~~~~~~~id~~---~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~ 76 (156)
+|+++++++.|+..+. +. ...+||+ .||+|+||.||++.+.+..+....
T Consensus 243 li~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~pf~rity~ea~~~~~~~~~~~~~------------------ 296 (435)
T 2xgt_A 243 LVCDTVDRLLADEEAKKLLE--------HINPKFQPPERPFLRMEYKDAIKWLQEHNVENEF------------------ 296 (435)
T ss_dssp HHHHHHHHHHTSHHHHHHHH--------HHSTTCCCCCSSCEEEEHHHHHHHHHHTTCBCTT------------------
T ss_pred HHHHHHHHHhccccchhhhh--------hccccccccCCCceEEEHHHHHHHHHhcCCCccc------------------
Confidence 5788888888765432 11 1234543 699999999999977643322110
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCccc-ccccCCCCCceeeeeeeecCE-eeecCCcccchh--h
Q psy9364 77 EVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL-AKWHRDHPGLTERFELFVMKK-EEVLLFPAMRPE--R 152 (156)
Q Consensus 77 ~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~-ElaNgysELnDp--q 152 (156)
+. ...+++.++..++.++++.+.+|+||+|||.+++|| ||.++++|++++|||||++|+ ||||||+|+||| |
T Consensus 297 ~~----~~~~g~~l~~~~e~~l~~~~~~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q 372 (435)
T 2xgt_A 297 GN----TFTYGEDIAEAAERFMTDTINKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDEL 372 (435)
T ss_dssp SC----BCCTTSCCCHHHHHHHHHHHTSCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHH
T ss_pred cc----ccchhhHHHHHHHHHHHHhcCCcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHH
Confidence 00 011122233344455555567999999999999995 999999999999999999996 999999999999 7
Q ss_pred hhc
Q psy9364 153 RRT 155 (156)
Q Consensus 153 r~r 155 (156)
++|
T Consensus 373 ~~r 375 (435)
T 2xgt_A 373 SKA 375 (435)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 10
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.84 E-value=1.6e-21 Score=168.48 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=86.4
Q ss_pred hHHHHHHHhcCC--cEEEecCCCCCCCCCeEecCC-CCceeeeHHHHHHHHhCC-CCCCCCCCChHHHHHHHHHHHHHcC
Q psy9364 2 HVQGMVKSTHGS--YKVTYHPDGPESGSPVEIDFT-PPFRRLHMFPALEAALGV-KLPNPTEFDTPEANKFLSDLCVKHE 77 (156)
Q Consensus 2 ~l~~~~~~~~g~--~~i~~~~~~~~~~~~~~id~~-~pf~rit~~ea~~~~~Gi-d~~~~~~~~~~~~~~~l~~~~~~~~ 77 (156)
+|+.+++++.|+ ..+.+. +..+++. .||+|+||.||++.+.+. ++.+..+++
T Consensus 237 ll~~l~~~~~~~~~~~i~~~--------~~~~~~~~~pf~rity~eA~~~~~~~~~~~~~~dl~---------------- 292 (422)
T 1n9w_A 237 LLAEMLEEALNTAGDEIRLL--------GATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLS---------------- 292 (422)
T ss_dssp HHHHHHHHHHHHSHHHHHHT--------TCCCCCCSSSCCEEEHHHHHHHHHHTSCCCCCSSCC----------------
T ss_pred HHHHHHHHHhccchhhhhhc--------CccccccCCCcceeEHHHHHHHHHhcCCcccccccC----------------
Confidence 567777777653 234442 2356654 799999999999998532 333322222
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhh
Q psy9364 78 VECPPPRTSARLLDKLVGEFLEETCI-NPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRR 154 (156)
Q Consensus 78 i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~ 154 (156)
...++++.+.+++++. +|+||+|||.+++||++.+.++ ++++|||||++|+||||||+|+||| |++
T Consensus 293 ----------~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~ 361 (422)
T 1n9w_A 293 ----------EEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSFDLLFRGLEITSGGQRIHRYEELLE 361 (422)
T ss_dssp ----------HHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEEEEEETTEEEEEEEEBCCCHHHHHH
T ss_pred ----------cHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEEEEEECCEEEEeCEeecCCHHHHHH
Confidence 1223445555666665 8999999999999997766655 8999999999999999999999999 777
Q ss_pred c
Q psy9364 155 T 155 (156)
Q Consensus 155 r 155 (156)
|
T Consensus 362 r 362 (422)
T 1n9w_A 362 S 362 (422)
T ss_dssp H
T ss_pred H
Confidence 6
No 11
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=99.82 E-value=9.7e-21 Score=168.08 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=80.6
Q ss_pred EecCCCCceeeeHHHHHHHH--hCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccCCcE-
Q psy9364 30 EIDFTPPFRRLHMFPALEAA--LGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPT- 106 (156)
Q Consensus 30 ~id~~~pf~rit~~ea~~~~--~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~Pt- 106 (156)
.+++ .||+|+||.||++.+ .|+++.+..+++ ...++++.+.|++++..|+
T Consensus 384 ~~~~-~pf~rit~~eai~~l~~~g~~~~~~~dl~--------------------------~~~e~~l~~~i~~~~~~~~~ 436 (548)
T 3i7f_A 384 DLIY-RPFLRLTYKEAIEMLRASGETIGDYDDFT--------------------------TPQEVKLGELIKAKYNTDFY 436 (548)
T ss_dssp CCCC-CSCEEEEHHHHHHHHHHTTCCCCTTCCCC--------------------------HHHHHHHHHHHHHHHCCSEE
T ss_pred cccc-CCcceeEHHHHHHHHHHcCCCCCCccccc--------------------------hHHHHHHHHHHHHHcCCCeE
Confidence 4556 899999999999876 688765543333 2234556666777777665
Q ss_pred EEecCCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 107 FICDHPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 107 FI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
||+|||++++|| ||.++++|++++|||||++|+||||||+||||| |++|
T Consensus 437 ~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G~Ei~nG~~rl~Dp~~~~~R 488 (548)
T 3i7f_A 437 ILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFLMKR 488 (548)
T ss_dssp EEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHHHHHHH
T ss_pred EEecCccccCchhhccCCCCCCeEEEEEEEECCEEEeeCeeecCCHHHHHHH
Confidence 568999999999 899999999999999999999999999999999 7766
No 12
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.82 E-value=2.8e-21 Score=167.45 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=86.3
Q ss_pred hHHHHHHHhcCC--cEEEecCCCCCCCCCeEec----CCCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHHHHH
Q psy9364 2 HVQGMVKSTHGS--YKVTYHPDGPESGSPVEID----FTPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLSDLC 73 (156)
Q Consensus 2 ~l~~~~~~~~g~--~~i~~~~~~~~~~~~~~id----~~~pf~rit~~ea~~~~~--Gid~~~~~~~~~~~~~~~l~~~~ 73 (156)
+++.+++++.|+ ..+.|. +..+| ++.||+|+||.||++.+. |+++.+..+++
T Consensus 246 ll~~l~~~v~~~~~~~i~~~--------~~~~~~~~~~~~pf~rity~ea~~~~~~~g~~~~~~~dl~------------ 305 (434)
T 1x54_A 246 LVSYMVQRTLELRKKEIEMF--------RDDLTTLKNTEPPFPRISYDEAIDILQSKGVNVEWGDDLG------------ 305 (434)
T ss_dssp HHHHHHHHHHHHCHHHHHTT--------CSCCHHHHTCCSSCCEEEHHHHHHHHHHTTCCCCTTCCCC------------
T ss_pred HHHHHHHHHhhhchhhhhhc--------CcccccccccCCCCcEEEHHHHHHHHHhcCCCcccCCccC------------
Confidence 466777776653 333442 23343 367999999999999885 55443332222
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCccc-ccccCCCCCceeeeeeeec-CE-eeecCCcccch
Q psy9364 74 VKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL-AKWHRDHPGLTERFELFVM-KK-EEVLLFPAMRP 150 (156)
Q Consensus 74 ~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~-G~-ElaNgysELnD 150 (156)
. .++.++...+.+|+||+|||.+++|| ||.++++|++++|||||++ |+ ||||||+|+||
T Consensus 306 --------------~----~~e~~l~~~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d 367 (434)
T 1x54_A 306 --------------A----DEERVLTEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDD 367 (434)
T ss_dssp --------------H----HHHHHHHTTCSSCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCC
T ss_pred --------------h----HHHHHHHHHhCCcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCC
Confidence 1 12233444557899999999999998 9999999999999999999 99 99999999999
Q ss_pred h--hhhc
Q psy9364 151 E--RRRT 155 (156)
Q Consensus 151 p--qr~r 155 (156)
| |++|
T Consensus 368 ~~~q~~r 374 (434)
T 1x54_A 368 YDKLLNR 374 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9 7776
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=99.78 E-value=3.1e-19 Score=159.50 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=56.2
Q ss_pred HHHHHHHHH--hhhcccCCcEEEecCCCC------------CcccccccCC-------CC-Cc-eeeeeeeecCEeeecC
Q psy9364 88 RLLDKLVGE--FLEETCINPTFICDHPQV------------MSPLAKWHRD-------HP-GL-TERFELFVMKKEEVLL 144 (156)
Q Consensus 88 ~ll~~lf~~--~vEp~l~~PtFI~dyP~~------------~spLAk~~~~-------~~-~~-~eRFELfi~G~ElaNg 144 (156)
++..+|+++ +||+ +.+|+||+|||.. .+||++.+++ +| .+ ++|||||++|+|||||
T Consensus 402 ~lr~~l~~~~~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~G 480 (580)
T 1l0w_A 402 AVRLRAADLLGLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGG 480 (580)
T ss_dssp HHHHHHHHHTTCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHhccccc-ccCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCEEEEeC
Confidence 344455555 6777 7799999999996 8999998876 57 47 9999999999999999
Q ss_pred Ccccchh--hhhc
Q psy9364 145 FPAMRPE--RRRT 155 (156)
Q Consensus 145 ysELnDp--qr~r 155 (156)
|+|+||| |++|
T Consensus 481 s~ri~d~~~q~~r 493 (580)
T 1l0w_A 481 SIRIHDPRLQARV 493 (580)
T ss_dssp EEBCCCHHHHHHH
T ss_pred eeecCCHHHHHHH
Confidence 9999999 8776
No 14
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.78 E-value=1.5e-19 Score=158.66 Aligned_cols=100 Identities=14% Similarity=0.249 Sum_probs=76.4
Q ss_pred EecCCC--CceeeeHHHHHH--HHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-C
Q psy9364 30 EIDFTP--PFRRLHMFPALE--AALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCI-N 104 (156)
Q Consensus 30 ~id~~~--pf~rit~~ea~~--~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~ 104 (156)
.+++.. ||.|++|.||++ +..|+++.+..+++. ..++++.+.+++.+. .
T Consensus 318 ~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~--------------------------~~e~~l~~~~~~~~~~~ 371 (487)
T 1eov_A 318 EFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLST--------------------------ENEKFLGKLVRDKYDTD 371 (487)
T ss_dssp CCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCH--------------------------HHHHHHHHHHHHHSCCS
T ss_pred ceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhh--------------------------HHHHHHHHHHHHHhCCC
Confidence 456655 999999999985 446876654322221 122333344444454 4
Q ss_pred cEEEecCCCCCccc-ccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 105 PTFICDHPQVMSPL-AKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 105 PtFI~dyP~~~spL-Ak~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
|+||+|||.+++|| +|.++++|++++|||||++|+||||||+|+||| |++|
T Consensus 372 ~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r 425 (487)
T 1eov_A 372 FYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQER 425 (487)
T ss_dssp EEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHH
T ss_pred CEEEECCccccChhhcCcCCCCCCeEEEEEEEeCCEEEEeeEEecCCHHHHHHH
Confidence 67899999999997 999999999999999999999999999999999 7765
No 15
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=99.72 E-value=1.2e-17 Score=149.38 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=60.7
Q ss_pred HHHHHHHHHHH--hhhcccCCcEEEecCCCC-----------CcccccccCC-------CC-Cc-eeeeeeeecCEeeec
Q psy9364 86 SARLLDKLVGE--FLEETCINPTFICDHPQV-----------MSPLAKWHRD-------HP-GL-TERFELFVMKKEEVL 143 (156)
Q Consensus 86 ~~~ll~~lf~~--~vEp~l~~PtFI~dyP~~-----------~spLAk~~~~-------~~-~~-~eRFELfi~G~ElaN 143 (156)
.+++..+|+++ +||+++.+|+||+|||.. .+||++.+++ +| .+ ++|||||++|+||||
T Consensus 406 lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~ 485 (585)
T 1c0a_A 406 MGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGG 485 (585)
T ss_dssp HHHHHHHHHHHTTCSCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTEEEEE
T ss_pred hHHHHHHHHHHhCcccccccccEEEEeCCccccccccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCEEEee
Confidence 35666777777 688888899999999996 7899998876 57 47 999999999999999
Q ss_pred CCcccchh--hhhc
Q psy9364 144 LFPAMRPE--RRRT 155 (156)
Q Consensus 144 gysELnDp--qr~r 155 (156)
||+|+||| |++|
T Consensus 486 Gs~ri~d~~~q~~r 499 (585)
T 1c0a_A 486 GSVRIHNGDMQQTV 499 (585)
T ss_dssp EEEBCCCHHHHHHH
T ss_pred eeeecCCHHHHHHH
Confidence 99999999 7776
No 16
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.36 E-value=2.8e-13 Score=111.78 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=43.7
Q ss_pred cCCcEEEecCCCCCcccccccCCCCCceeeeeeeec-CE-eeecCCcccchh--hhhc
Q psy9364 102 CINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVM-KK-EEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 102 l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~-G~-ElaNgysELnDp--qr~r 155 (156)
+.+|+||+||| +|+.+.. ||++++|||||++ |+ ||+|||+|+||| |++|
T Consensus 180 ~~~P~~v~~~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~ 232 (294)
T 1nnh_A 180 MEEPFWIINIP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAK 232 (294)
T ss_dssp CSSCEEEECCC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHH
T ss_pred cCCCEEEEcCC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHH
Confidence 35899999999 9997665 8999999999999 98 999999999999 6554
No 17
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.87 E-value=1.8e-05 Score=71.15 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCcEEEecCCCC--C-----------cccccccCCC---------CCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364 103 INPTFICDHPQV--M-----------SPLAKWHRDH---------PGLTERFELFVMKKEEVLLFPAMRPE--RRRT 155 (156)
Q Consensus 103 ~~PtFI~dyP~~--~-----------spLAk~~~~~---------~~~~eRFELfi~G~ElaNgysELnDp--qr~r 155 (156)
..+.+|+|||.- - -|++.+++++ ...+++|||+++|.||+||+.|++|| |+++
T Consensus 437 ~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~ 513 (617)
T 4ah6_A 437 FSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYI 513 (617)
T ss_dssp CCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTEEEEEEECCCCSHHHHHHH
T ss_pred eEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECCEEEeeeeEEcCCHHHHHHH
Confidence 378999999974 1 1555555444 23599999999999999999999999 7765
No 18
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=62.13 E-value=4.3 Score=36.41 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=17.6
Q ss_pred ecCCCCceeeeHHHHHHHHh
Q psy9364 31 IDFTPPFRRLHMFPALEAAL 50 (156)
Q Consensus 31 id~~~pf~rit~~ea~~~~~ 50 (156)
.+++.||+|+||.||+.+|.
T Consensus 271 ~~~~~pf~r~ty~eA~~~yg 290 (617)
T 4ah6_A 271 DPVVVPFPTMTFAEVLATYG 290 (617)
T ss_dssp CCCCSSCCEEEHHHHHHHTS
T ss_pred CccCCCceEeEHHHHHHHHc
Confidence 36789999999999999984
No 19
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=52.53 E-value=24 Score=24.36 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=23.3
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 72 LCVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 72 ~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
..++.++.. +..+.+++++.+.++ |.|+ +|..+.+
T Consensus 69 ~~k~l~l~~-~~ls~~~~~~lm~~~---p~LikRPIv~~~ 104 (121)
T 3rdw_A 69 LYKTLNLDD-RGLTQDQLLQAMADN---PKLIERPIVVTQ 104 (121)
T ss_dssp HHHHTTTTC-TTCCHHHHHHHHHHC---GGGBCCCEEEET
T ss_pred hhhhcCccc-ccCCHHHHHHHHHhC---ccceeCCEEEEC
Confidence 345555542 345778888888764 7776 7887764
No 20
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=40.73 E-value=52 Score=23.25 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=21.6
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEe
Q psy9364 74 VKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFIC 109 (156)
Q Consensus 74 ~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~ 109 (156)
++.++... ..+.+++++.+.++ |.|+ +|+.+.
T Consensus 67 k~l~l~~~-~ls~~~~~~lm~~~---P~LikRPiv~~ 99 (141)
T 1s3c_A 67 EQLGLAED-KFTDDQLIDFMLQH---PILINRPIVVT 99 (141)
T ss_dssp HHTTTTSS-CCCHHHHHHHHHHS---GGGBCSCEEEE
T ss_pred HhcCCccc-cCCHHHHHHHHHhC---ccceEccEEEE
Confidence 34444432 56788888888764 7776 898765
No 21
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=34.95 E-value=63 Score=26.71 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=33.1
Q ss_pred CcEEEecCCCCCccccccc----CCCCCce---------eeeeeee------cCEeeecCCcccc
Q psy9364 104 NPTFICDHPQVMSPLAKWH----RDHPGLT---------ERFELFV------MKKEEVLLFPAMR 149 (156)
Q Consensus 104 ~PtFI~dyP~~~spLAk~~----~~~~~~~---------eRFELfi------~G~ElaNgysELn 149 (156)
.|+||++-|..++- -+.| ++-+.|. --.++++ +-.||+++--+-+
T Consensus 194 gaVFii~IG~~L~~-g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIRVd 257 (330)
T 12as_A 194 GAVFLVGIGGKLSD-GHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVD 257 (330)
T ss_dssp SEEEEECCSSCCSS-SCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEBCC
T ss_pred CCEEEEecCCccCC-CCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEEeC
Confidence 79999999976654 3344 4457788 8889887 3689988887733
No 22
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=32.90 E-value=36 Score=23.32 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=21.5
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 74 VKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 74 ~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
++.++.. +..+.+++++.+.++ |.|+ +|..+.+
T Consensus 70 k~l~l~~-~~ls~~~~~~lm~~~---p~LikRPIv~~~ 103 (119)
T 3f0i_A 70 KELNLGD-SQLSDDALFAAMAEH---PKLIERPIVVCN 103 (119)
T ss_dssp HHTTTTC-TTCCHHHHHHHHHHC---GGGBCSCEEEET
T ss_pred hhcCccc-ccCCHHHHHHHHHhC---hhheeCCEEEEC
Confidence 4444433 245778888888764 7776 7887764
No 23
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=26.84 E-value=26 Score=24.98 Aligned_cols=18 Identities=0% Similarity=-0.090 Sum_probs=15.8
Q ss_pred eeeeeecCEeeecCCccc
Q psy9364 131 RFELFVMKKEEVLLFPAM 148 (156)
Q Consensus 131 RFELfi~G~ElaNgysEL 148 (156)
.|+++++|+++|.|.+..
T Consensus 40 ~y~v~lng~~la~G~s~~ 57 (136)
T 3but_A 40 HYTIEMNGVKVADGYENS 57 (136)
T ss_dssp EEEEEETTEEEEEEEECC
T ss_pred EEEEEECCEEEEeeeecC
Confidence 789999999999998653
No 24
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=26.83 E-value=22 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=17.6
Q ss_pred ceeeeeeeecCEeeecCCccc
Q psy9364 128 LTERFELFVMKKEEVLLFPAM 148 (156)
Q Consensus 128 ~~eRFELfi~G~ElaNgysEL 148 (156)
-.+|||||+.|.==|.|++=+
T Consensus 41 ~~kr~elyf~G~mWCPgWT~i 61 (102)
T 2job_A 41 YLKRFQVYYKGRMWCPGWTAI 61 (102)
T ss_dssp EEETTEEEEEEEEECBTTBSC
T ss_pred ceeeeeEEEEEEEecCCccce
Confidence 358999999999999888754
No 25
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=24.77 E-value=38 Score=23.10 Aligned_cols=34 Identities=9% Similarity=0.263 Sum_probs=22.6
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 73 CVKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 73 ~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
.++.++.. +..+.+++++.+.++ |.|+ +|..+.+
T Consensus 64 ~k~l~~~~-~~ls~~~~~~~m~~~---p~LikRPiv~~~ 98 (120)
T 3l78_A 64 FQKLDIDV-DELSVSELINLISKN---PSLLRRPIIMDN 98 (120)
T ss_dssp HHHTTCCG-GGCCHHHHHHHHHHC---GGGBCSCEEECS
T ss_pred HHHcCCCc-ccCCHHHHHHHHHhC---ccceeccEEEEC
Confidence 34555543 346778888888764 7776 7887754
No 26
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.55 E-value=25 Score=24.58 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhcccCCcEEEecCCC
Q psy9364 67 KFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQ 113 (156)
Q Consensus 67 ~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~ 113 (156)
..+.+.+....+++|. ....+.++....|...+..+.|+.++|.
T Consensus 85 ~~v~~~l~Dl~lDiP~---a~~~l~~~v~~ai~~g~l~~~~~~~~p~ 128 (129)
T 2nsz_A 85 ERIYNEIPDINLDVPH---SYSVLERFVEECFQAGIISKQLRDLCPS 128 (129)
T ss_dssp HHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTCSCHHHHHTCTT
T ss_pred HHHHhhChHhhcCccc---hHHHHHHHHHHHHHCCCCCHHHHhhCCC
Confidence 3444444455566663 4568888888889988999999999995
No 27
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=22.29 E-value=1.8e+02 Score=19.45 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhh
Q psy9364 67 KFLSDLCVKHEVECPPPRTSARLLDKLVGEFL 98 (156)
Q Consensus 67 ~~l~~~~~~~~i~~~~~~~~~~ll~~lf~~~v 98 (156)
..|+.+.+.+++.+++..+.+.|...+-.|+.
T Consensus 30 ~tLrrY~r~y~L~~~~~~sK~qLa~aV~kHF~ 61 (94)
T 2ld7_A 30 NTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFK 61 (94)
T ss_dssp HHHHHHHHHTTCCCCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 45666666666666555566666555555543
No 28
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=21.36 E-value=78 Score=21.56 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHhhhcccC-CcEEEec
Q psy9364 84 RTSARLLDKLVGEFLEETCI-NPTFICD 110 (156)
Q Consensus 84 ~~~~~ll~~lf~~~vEp~l~-~PtFI~d 110 (156)
.+.+++++.+.++ |.|+ +|.++.+
T Consensus 79 ls~~~~~~lm~~~---p~LikRPIv~~~ 103 (120)
T 3fz4_A 79 LSLDEAANLLASD---GMLIKRPLLVKE 103 (120)
T ss_dssp CCHHHHHHHHHHC---GGGBCSCEEEET
T ss_pred CCHHHHHHHHHhC---hheEeccEEEEC
Confidence 3556677777654 6666 7888764
Done!