RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9364
(156 letters)
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 197 bits (503), Expect = 2e-61
Identities = 73/139 (52%), Positives = 90/139 (64%), Gaps = 10/139 (7%)
Query: 2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFD 61
V GMVK GSYK+ YH +EIDFTPPFRR+ M +E A G+ P
Sbjct: 342 MVSGMVKELTGSYKIKYHG--------IEIDFTPPFRRISMISLVEEATGIDFPAD--LK 391
Query: 62 TPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKW 121
+ EAN +L C K +V+CPPP+T+ RLL++L EFLEET + PTF+ DHP MSPLAK
Sbjct: 392 SDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKP 451
Query: 122 HRDHPGLTERFELFVMKKE 140
HR PGLTERFELF+ +E
Sbjct: 452 HRSKPGLTERFELFINGRE 470
Score = 26.5 bits (59), Expect = 7.5
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 141 EVLLFPAMRPE 151
+V+ FPAM+P+
Sbjct: 542 DVIAFPAMKPQ 552
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core
domain. Class II LysRS is a dimer which attaches a
lysine to the 3' OH group of ribose of the appropriate
tRNA. Its assignment to class II aaRS is based upon its
structure and the presence of three characteristic
sequence motifs in the core domain. It is found in
eukaryotes as well as some prokaryotes and archaea.
However, LysRS belongs to class I aaRS's in some
prokaryotes and archaea. The catalytic core domain is
primarily responsible for the ATP-dependent formation of
the enzyme bound aminoacyl-adenylate.
Length = 329
Score = 176 bits (448), Expect = 2e-55
Identities = 62/136 (45%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 5 GMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPE 64
G+VK +G K+ Y E+DFTPPF+R+ M AL+ G+ P E
Sbjct: 124 GLVKKINGKTKIEY--------GGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEE 175
Query: 65 ANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRD 124
K L+ L + PRT +LLDKL EF+E T I PTFI DHP +SPLAK HR
Sbjct: 176 LAKLLAKLIKEK---IEKPRTLGKLLDKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRS 232
Query: 125 HPGLTERFELFVMKKE 140
+PGLTERFELF+ KE
Sbjct: 233 NPGLTERFELFICGKE 248
Score = 26.8 bits (60), Expect = 5.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 140 EEVLLFPAMRP 150
+V+LFPAMRP
Sbjct: 319 RDVILFPAMRP 329
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation,
ribosomal structure and biogenesis].
Length = 502
Score = 137 bits (348), Expect = 4e-39
Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 16/140 (11%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
++ + K +G+ KVTY EIDF+ PF+R+ M AL+ LGV FD
Sbjct: 294 IKELAKEVNGTTKVTYGGQ--------EIDFSKPFKRITMVDALKEYLGVDFD--DLFDD 343
Query: 63 PEANKFLSDLCVKHEVECPPPRTS--ARLLDKLVGEFLEETCINPTFICDHPQVMSPLAK 120
EA + L KH +E T LL++L E +E I PTF+ DHP +SPLAK
Sbjct: 344 EEAKE----LAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFVTDHPVEISPLAK 399
Query: 121 WHRDHPGLTERFELFVMKKE 140
HR +PGLTERFELF+ KE
Sbjct: 400 RHRSNPGLTERFELFIGGKE 419
Score = 27.6 bits (62), Expect = 3.3
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 141 EVLLFPAMRPE 151
+V+LFPAMRPE
Sbjct: 491 DVILFPAMRPE 501
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
Length = 491
Score = 132 bits (334), Expect = 4e-37
Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 15/138 (10%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
++ + ++ G+ KVTY G EIDF PPF+RL M A++ GV +
Sbjct: 286 IRHLAQAVLGTTKVTY--QG------TEIDFGPPFKRLTMVDAIKEYTGVDF---DDMTD 334
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
EA L + +E +L+++L EF+E I PTFI D+P +SPLAK H
Sbjct: 335 EEARA----LAKELGIEVEKSWGLGKLINELFEEFVEPKLIQPTFITDYPVEISPLAKRH 390
Query: 123 RDHPGLTERFELFVMKKE 140
R+ PGLTERFELF+ +E
Sbjct: 391 REDPGLTERFELFIGGRE 408
Score = 29.7 bits (68), Expect = 0.66
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 141 EVLLFPAMRPE 151
+V+LFP MRPE
Sbjct: 480 DVILFPLMRPE 490
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 125 bits (314), Expect = 3e-34
Identities = 63/136 (46%), Positives = 88/136 (64%), Gaps = 4/136 (2%)
Query: 6 MVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 65
+V G+YK+ Y+ DGPE P+EIDFTPP+ ++ + LE KL P FD+PE
Sbjct: 370 LVMHLFGTYKILYNKDGPEK-DPIEIDFTPPYPKVSIVEELEKLTNTKLEQP--FDSPET 426
Query: 66 NKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCIN-PTFICDHPQVMSPLAKWHRD 124
+ +L ++++E P P T+A+LLD+L F+E N P FI +HPQ+MSPLAK+HR
Sbjct: 427 INKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPLAKYHRS 486
Query: 125 HPGLTERFELFVMKKE 140
PGLTER E+F+ KE
Sbjct: 487 KPGLTERLEMFICGKE 502
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 115 bits (288), Expect = 2e-30
Identities = 46/111 (41%), Positives = 72/111 (64%)
Query: 26 GSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRT 85
G+PV +D PFRR+ ++ ++ GV+ P P E +TP+ ++S + +++ + PP RT
Sbjct: 369 GNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRT 428
Query: 86 SARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFV 136
+A++ +KL+ F+ + + PTF+ DHP MSPLAK PGL ERFELFV
Sbjct: 429 AAKMFEKLIDFFITDRVVEPTFVMDHPLFMSPLAKEQVSRPGLAERFELFV 479
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and
non-spirochete bacterial. This model represents the
lysyl-tRNA synthetases that are class II amino-acyl tRNA
synthetases. It includes all eukaryotic and most
bacterial examples of the enzyme, but not archaeal or
spirochete forms [Protein synthesis, tRNA
aminoacylation].
Length = 496
Score = 112 bits (281), Expect = 1e-29
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ + + G+ K+TY +EIDF PF+R+ M A++ + +
Sbjct: 286 FKFLAQELLGTTKITY--------GELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKD 337
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
E K L+ E T +L++L +FLE T I PTFI +P +SPLAK +
Sbjct: 338 FETAKALAKKIGIEVAEKSL--TLGHILNELFEQFLEHTLIQPTFITHYPAEISPLAKRN 395
Query: 123 RDHPGLTERFELFVMKKE 140
+P T+RFELF+ KE
Sbjct: 396 PSNPEFTDRFELFIAGKE 413
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 69.6 bits (171), Expect = 1e-14
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+Q ++ HG+ V PDG G +D + P+ + + A+ ALG ++ T
Sbjct: 884 IQNAAQAAHGAPVVM-RPDG--DGVLEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAE 940
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
L LC + + ++ +L +E+ PTF D P +SPL + H
Sbjct: 941 ------LRKLCDAAGIPYRTDWDAGAVVLELYEHLVEDRTTFPTFYTDFPTSVSPLTRPH 994
Query: 123 RDHPGLTERFEL 134
R PGL ER++L
Sbjct: 995 RSDPGLAERWDL 1006
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N).
Length = 345
Score = 59.9 bits (146), Expect = 2e-11
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 14/142 (9%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
++ + K G + +E+ P F R+ A+E K +
Sbjct: 137 IKYVFKKVLGKREELELLG-------IEL---PEFPRITYAEAIERYGSDKPDLRFGLEL 186
Query: 63 PEANKFLSDLCVKHEVECPPPRTSA--RLLDKLVGEFL-EETCINPTFICDHPQVMSPLA 119
+ + K E A L +L E L ++ NP F+ D P P
Sbjct: 187 KDVTEIFKGSEFKVFAEAGDVVDKALGALRSELGEENLGDKDKDNPVFVTDFPLFEHPFY 246
Query: 120 KWHRDH-PGLTERFELFVMKKE 140
+ PGL ERF+L + E
Sbjct: 247 MPKDEDPPGLAERFDLVLNGGE 268
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed.
Length = 505
Score = 47.7 bits (113), Expect = 5e-07
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 6 MVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 65
+ + G+ KVTY G V DF PF +L M A++ + + D +A
Sbjct: 301 LAQEVLGTTKVTY-------GEHV-FDFGKPFEKLTMREAIKKYR--PETDMADLDNFDA 350
Query: 66 NKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDH 125
K L++ + VE R++ ++ E E I PTFI ++P +SPLA+ + +
Sbjct: 351 AKALAE-SIGITVE--KSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVN 407
Query: 126 PGLTERFELFVMKKE 140
P +T+RFE F+ +E
Sbjct: 408 PEITDRFEFFIGGRE 422
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative
bacteria have a protein closely homologous to the
C-terminal region of lysyl-tRNA synthetase (LysS).
Multiple sequence alignment of these proteins with the
homologous regions of collected LysS proteins shows that
these proteins form a distinct set rather than just
similar truncations of LysS. The protein is termed GenX
after its designation in E. coli. Interestingly, genX
often is located near a homolog of
lysine-2,3-aminomutase. Its function is unknown [Unknown
function, General].
Length = 290
Score = 42.2 bits (100), Expect = 3e-05
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 69 LSDLCVKHEVECPPPRTSARLLDKLVGEFLEET--CINPTFICDHPQVMSPLAKWHRDHP 126
L H + LLD L E +E PTF+ D+P + LA+ D P
Sbjct: 142 LQAAAAAHGIRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISPDDP 201
Query: 127 GLTERFELFV 136
+ ERFEL++
Sbjct: 202 RVAERFELYI 211
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II
core domain. This domain is the core catalytic domain of
class II aminoacyl-tRNA synthetases of the subgroup
containing aspartyl, lysyl, and asparaginyl tRNA
synthetases. It is primarily responsible for
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. Nearly all class II tRNA synthetases
are dimers and enzymes in this subgroup are homodimers.
These enzymes attach a specific amino acid to the 3' OH
group of ribose of the appropriate tRNA.
Length = 269
Score = 34.8 bits (80), Expect = 0.010
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 104 NPTFICDHP-QVMSPLAKWHRDHPGLTERFELFV 136
P F+ D+P ++ SPLA H +P + + F+LF+
Sbjct: 155 QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFI 188
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA
synthetase (class II) [Translation, ribosomal structure
and biogenesis].
Length = 322
Score = 34.6 bits (80), Expect = 0.013
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 103 INPTFICDHPQVMSPLAKWHRDHPGLTERFELFV 136
PTF+ P + LA+ P + ERFEL+
Sbjct: 205 ERPTFLYHFPASQAALAQISTGDPRVAERFELYY 238
>gnl|CDD|198294 cd03185, GST_C_Tau, C-terminal, alpha helical domain of Class Tau
Glutathione S-transferases. Glutathione S-transferase
(GST) C-terminal domain family, Class Tau subfamily;
GSTs are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. The plant-specific class Tau GST
subfamily has undergone extensive gene duplication. The
Arabidopsis and Oryza genomes contain 28 and 40 Tau
GSTs, respectively. They are primarily responsible for
herbicide detoxification together with class Phi GSTs,
showing class specificity in substrate preference. Tau
enzymes are highly efficient in detoxifying
diphenylether and aryloxyphenoxypropionate herbicides.
In addition, Tau GSTs play important roles in
intracellular signalling, biosynthesis of anthocyanin,
responses to soil stresses and responses to auxin and
cytokinin hormones.
Length = 127
Score = 33.3 bits (77), Expect = 0.018
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 40 LHMFPALEAALGVKLPNPTEFDTPE----ANKFLSDLCVKHEVECPPPRTSARLLDKLVG 95
L F A+E GVKL + +F P A +FL VK E P R DKLV
Sbjct: 74 LGWFKAIEEVGGVKLLDEEKF--PLLAAWAERFLEREAVK---EVLPDR------DKLV- 121
Query: 96 EFL 98
EFL
Sbjct: 122 EFL 124
>gnl|CDD|219449 pfam07523, Big_3, Bacterial Ig-like domain (group 3). This
family consists of bacterial domains with an Ig-like
fold. Members of this family are found in a variety of
bacterial surface proteins.
Length = 67
Score = 28.0 bits (63), Expect = 0.48
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 3 VQGMVKSTH-GSYKVTYHPDG 22
V G V +T G+Y+VTY DG
Sbjct: 38 VSGTVDTTKAGTYEVTYTYDG 58
>gnl|CDD|185214 PRK15314, PRK15314, outer membrane protein RatB; Provisional.
Length = 2435
Score = 29.4 bits (65), Expect = 0.84
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 1 MHVQGMVKSTHGSYKVTYHPDG-----PESGSPVEIDFTPPFRRLHMFPALEAALGVKLP 55
M QGM + + V P G P S PV T P R VK
Sbjct: 816 MTYQGMTDAEGNATLVIEQPQGVGLLTPLSVLPVNSLITTPVNR-----------SVKFT 864
Query: 56 NPTEFDTPEANKF--LSDLCVKHEVECPPPRTSA 87
PT DTPEA + ++D ++E P+ +A
Sbjct: 865 VPTSPDTPEAQMWGHMADTLTVGDMEFQRPKLAA 898
>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and
Galactoside O-acetyltransferase (GAT): MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively at the C6
position of the nonreducing end glucosyl moiety. GAT
specifically acetylates galactopyranosides. Furthermore,
MAT shows higher affinity toward artificial substrates
containing an alkyl or hydrophobic chain as well as a
glucosyl unit. Active MAT and GAT are homotrimers, with
each subunit consisting of an N-terminal alpha-helical
region and a C-terminal left-handed parallel alpha-helix
(LbH) subdomain with 6 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X).
Length = 169
Score = 28.5 bits (65), Expect = 0.95
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 80 CPPPRTSAR--LLDKLVGEFLEETCINPTFICDH 111
PP R LL +L G E I P F CD+
Sbjct: 26 TPPSDAEERRELLKELFGSVGENVYIEPPFHCDY 59
>gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional.
Length = 306
Score = 28.7 bits (65), Expect = 1.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 105 PTFICDHPQVMSPLAKWHRDHPGLTERFELF 135
PTF+ P + LAK + + ERFE++
Sbjct: 198 PTFVYHFPASQAALAKISTEDHRVAERFEVY 228
>gnl|CDD|100075 cd02646, R3H_G-patch, R3H domain of a group of fungal and plant
proteins with unknown function, who also contain a
G-patch domain. The name of the R3H domain comes from
the characteristic spacing of the most conserved
arginine and histidine residues. The function of the R3H
domain is predicted to bind ssDNA or ssRNA in a
sequence-specific manner.
Length = 58
Score = 26.0 bits (58), Expect = 2.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 132 FELFVMKKEEVLLFPAMRPERRRTL 156
E F++ + L FP M R+T+
Sbjct: 8 IEAFLLDSRDSLSFPPMDKHGRKTI 32
>gnl|CDD|234312 TIGR03686, pupylate_PafA, proteasome accessory factor PafA.
Members of this family are PafA (proteasome accessory
factor A), a protein shown to regulate steady-state
levels of certain proteasome targets in Mycobacterium
tuberculosis. Iyer, et al (2008) suggest that PafA is
the ligase for Pup, a ubiquitin analog attached to an
epsilon-amino group of a Lys side-chain to direct the
target to the proteasome [Protein fate, Degradation of
proteins, peptides, and glycopeptides].
Length = 453
Score = 27.0 bits (60), Expect = 4.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 65 ANKFLSDLCVKHEVECPPPRTSARLLDKLVG 95
A + ++D ++ V+ PP T A L + V
Sbjct: 377 ARRLVTDETIEQAVDQPPQTTRAALRGRFVK 407
>gnl|CDD|219670 pfam07967, zf-C3HC, C3HC zinc finger-like. This zinc-finger like
domain is distributed throughout the eukaryotic kingdom
in NIPA (Nuclear interacting partner of ALK) proteins.
NIPA is implicate to perform some sort of antiapoptotic
role in nucleophosmin-anaplastic lymphoma kinase (ALK)
mediated signaling events. The domain is often repeated,
with the second domain usually containing a large insert
(approximately 90 residues) after the first three
cysteine residues. The Schizosaccharomyces pombe the
protein containing this domain is involved in mRNA
export from the nucleus.
Length = 132
Score = 26.2 bits (58), Expect = 4.7
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 47 EAALGVKLPNPTEFDTPEANK----FLSDLCVKHEVECP-----PPRTSARL----LDKL 93
A L KLPN + D K + L HE CP P L L
Sbjct: 50 GARLCYKLPNIVKLDESVYKKLVEEYSKLLVTGHEENCPWRNNGCPEILELLPLANPQVL 109
Query: 94 VGEFLEE 100
+ ++ +
Sbjct: 110 LSDYRKR 116
>gnl|CDD|226742 COG4292, COG4292, Predicted membrane protein [Function unknown].
Length = 387
Score = 27.0 bits (60), Expect = 4.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 116 SPLAKWHRDHPGLTERFELFVM 137
S L D L ERF LFV+
Sbjct: 187 STLDLVPVDGGHLAERFGLFVI 208
>gnl|CDD|215522 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate
reductase.
Length = 381
Score = 26.7 bits (59), Expect = 5.1
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 11/39 (28%)
Query: 12 GSYKVTYHPDGPE--------SGSPVEIDFTP---PFRR 39
G+Y VT H PE +GS V FTP P R
Sbjct: 237 GAYGVTRHRHVPEIEQGLADAAGSKVTPSFTPHLMPMSR 275
>gnl|CDD|180670 PRK06722, PRK06722, exonuclease; Provisional.
Length = 281
Score = 26.2 bits (57), Expect = 8.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 64 EANKFLSDLCVKHEVECPPPRTSARL-LDKLVGEFLEE 100
E +FLS C H VECP R+ L K V + EE
Sbjct: 100 EDYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEE 137
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57.
Eukaryotic cilia and flagella are specialised
organelles found at the periphery of cells of diverse
organisms. Intra-flagellar transport (IFT) is required
for the assembly and maintenance of eukaryotic cilia
and flagella, and consists of the bidirectional
movement of large protein particles between the base
and the distal tip of the organelle. IFT particles
contain multiple copies of two distinct protein
complexes, A and B, which contain at least 6 and 11
protein subunits. IFT57 is part of complex B but is
not, however, required for the core subunits to stay
associated. This protein is known as
Huntington-interacting protein-1 in humans.
Length = 355
Score = 26.2 bits (58), Expect = 8.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 36 PFRRLHMFPALEAAL----GVKLPNPTEFDTPEA--NKFLSDL 72
P + + F +L A L G K P EFD P A + L++L
Sbjct: 38 PGEQFYYFTSLCAWLMSKAGRKFEQPQEFDDPNATASNILNEL 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.440
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,389,417
Number of extensions: 762188
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 36
Length of query: 156
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 67
Effective length of database: 6,990,096
Effective search space: 468336432
Effective search space used: 468336432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)