RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9364
(156 letters)
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 212 bits (543), Expect = 9e-68
Identities = 101/138 (73%), Positives = 110/138 (79%), Gaps = 1/138 (0%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
V GMVK GSYKVTYHPDGPE G ++DFTPPFRR++M LE ALG+KLP F+T
Sbjct: 290 VSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFET 348
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
E K L D+CV VECPPPRT+ARLLDKLVGEFLE TCINPTFICDHPQ+MSPLAKWH
Sbjct: 349 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWH 408
Query: 123 RDHPGLTERFELFVMKKE 140
R GLTERFELFVMKKE
Sbjct: 409 RSKEGLTERFELFVMKKE 426
Score = 31.7 bits (73), Expect = 0.089
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 141 EVLLFPAMRPE 151
EVLLFPAM+PE
Sbjct: 498 EVLLFPAMKPE 508
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 125 bits (317), Expect = 6e-35
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
+ + G+ K+ Y +D TP +RRLHM A++ +GV +F
Sbjct: 288 IAHIATEVLGTTKIQY--GE------HLVDLTPEWRRLHMVDAIKEYVGV------DFWR 333
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
+++ +L +H VE P T ++++ + +E+ I PTFI HP +SPLAK +
Sbjct: 334 QMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKN 393
Query: 123 RDHPGLTERFELFVMKKE 140
D P T+RFELF++ +E
Sbjct: 394 PDDPRFTDRFELFIVGRE 411
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 124 bits (314), Expect = 2e-34
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 9/138 (6%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
++ G+ + Y G E+D PF RL + A++ D
Sbjct: 318 IRQAAVDALGTATIQY--QG------RELDLAQPFHRLTITQAIQKYAPSYTDGQLS-DD 368
Query: 63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
L L V L L E E PTFI D+P +SPLA+
Sbjct: 369 AFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARES 428
Query: 123 RDHPGLTERFELFVMKKE 140
G+TERFELF+ +E
Sbjct: 429 DTVAGITERFELFITGRE 446
Score = 29.8 bits (68), Expect = 0.30
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 141 EVLLFPAMRPE 151
+VLLFP +R E
Sbjct: 518 DVLLFPHLRRE 528
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 122 bits (309), Expect = 1e-33
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPAL-EAALGVKLPNPTEFD 61
+ + + G+ KVTY DF PF +L M A+ + + + FD
Sbjct: 297 FRTLAQEVLGTTKVTY--GE------HVFDFGKPFEKLTMREAIKKYRPETDMADLDNFD 348
Query: 62 TPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKW 121
L + R++ ++ E E I PTFI ++P +SPLA+
Sbjct: 349 ------AAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARR 402
Query: 122 HRDHPGLTERFELFVMKKE 140
+ +P +T+RFE F+ +E
Sbjct: 403 NDVNPEITDRFEFFIGGRE 421
Score = 30.6 bits (70), Expect = 0.18
Identities = 8/12 (66%), Positives = 12/12 (100%)
Query: 141 EVLLFPAMRPER 152
+V+LFPAMRP++
Sbjct: 493 DVILFPAMRPQK 504
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 86.1 bits (214), Expect = 5e-21
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 34 TPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKL 93
P L A L + +P D + + + L + + + R LL L
Sbjct: 161 CPAAESLSYQQAFLRYLEI---DPLSADKTQLREVAAKLDLSNVADTEEDR--DTLLQLL 215
Query: 94 VGEFLEET--CINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
+E PTF+ P + LA+ + + ERFE++ E
Sbjct: 216 FTFGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGIE 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.003
Identities = 33/163 (20%), Positives = 51/163 (31%), Gaps = 50/163 (30%)
Query: 10 THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA--LEAALGVKLPNPTEF----DTP 63
+HGS +E P F A L+ LP PTE D P
Sbjct: 12 SHGS---------------LEHVLLVP-TASF-FIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 64 EAN-----KFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPL 118
KFL V VE ++L+ + EF E + I H
Sbjct: 55 TTPAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDI--HALAAK-- 107
Query: 119 AKWHRDHPGLTERFELFVMKKEEVLL--FPAM----RPERRRT 155
L + + ++K +E++ A RP +++
Sbjct: 108 ---------LLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.008
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 33/118 (27%)
Query: 67 KFLSDL-C---------------VKHEVECPPPRTSARLL--------DKLVGEFLEETC 102
F+ + C + H + + L +++V +F+EE
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV- 86
Query: 103 INPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMK-KEEVLLFPAM---RPERRRTL 156
+ ++ +MSP+ R +T + + + +F R + L
Sbjct: 87 LRI----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Score = 34.1 bits (77), Expect = 0.013
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 30/124 (24%)
Query: 37 FRRLHMFPALEAALGVKLPNPT------EFDTPEANKFLSDLCVKHEVECPPPRTSARLL 90
F RL +FP +P + + ++ L VE P ++ +
Sbjct: 375 FDRLSVFPP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 91 D---KLVGEFLEETCINPTFI-------CDHPQVMSPLAK---------WHRDHPGLTER 131
+L + E ++ + + + P H + ER
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 132 FELF 135
LF
Sbjct: 490 MTLF 493
Score = 32.1 bits (72), Expect = 0.065
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 70 SDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICD-HPQVMSPLAKWHRDHPGL 128
+ + + H P LL K + ++ P + +P+ +S +A+ RD
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLAT 343
Query: 129 TERFE-LFVMKKEEVL------LFPAMRPERRR 154
+ ++ + K ++ L PA E R+
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPA---EYRK 373
>3srt_A Maltose O-acetyltransferase; structural genomics, the center
structural genomics of infectious diseases, csgid; 2.50A
{Clostridium difficile}
Length = 188
Score = 28.6 bits (65), Expect = 0.54
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 87 ARLLDKLVGEFLEETCINPTFICDH 111
+L +L G ++ + CD+
Sbjct: 49 EDILRQLFGSVGKQINVEQNIRCDY 73
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1
biovar eltor} PDB: 3ect_A*
Length = 195
Score = 28.6 bits (65), Expect = 0.57
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 87 ARLLDKLVGEFLEETCINPTFICDH 111
L +L G ++C+ P F C+
Sbjct: 49 YALQRELFGHLGHKSCVQPPFHCEF 73
>3ftt_A Putative acetyltransferase sacol2570; galactoside
O-acetyltransferase, enzyme, structural genomics,
acyltransferase; 1.60A {Staphylococcus aureus subsp}
PDB: 3v4e_A*
Length = 199
Score = 28.7 bits (65), Expect = 0.58
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 87 ARLLDKLVGEFLEETCINPTFICDH 111
L+D+L + I+ F D+
Sbjct: 47 KELIDQLFQTTTDNVSISIPFDTDY 71
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus
kaustophilus structural genomics, PSI; 1.74A
{Geobacillus kaustophilus} PDB: 2ic7_A
Length = 185
Score = 28.2 bits (64), Expect = 0.74
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 87 ARLLDKLVGEFLEETCINPTFICDH 111
LL +L G E I P F CD+
Sbjct: 47 TGLLKELFGSTGERLFIEPNFRCDY 71
>3e98_A GAF domain of unknown function; structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas
aeruginosa}
Length = 252
Score = 28.3 bits (62), Expect = 0.96
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 81 PPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDH 125
+A L + V +L + +P F +H +++ L H+
Sbjct: 23 KSQEPTAALDAEQVAAYLSQ---HPEFFVEHDELIPELRIPHQPG 64
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 1.1
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 23/79 (29%)
Query: 13 SYKVTYHPDGPESGSPVEI-DFTPPFRRLHMFPALE--------------AA-----LGV 52
+ +V Y + E+ + PP R+ + LE A + +
Sbjct: 119 AIQVNYSSEVKENSVDSDDKAKVPPLIRI-V-SGLELSDTKQKGKKFLVIAYEPFENIAI 176
Query: 53 KLPNPTEFDTPEANKFLSD 71
+LP E E N ++
Sbjct: 177 ELPP-NEILFSENNDMDNN 194
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 17 TYHP-DGPESGSPVEIDFTPPFRRLHMFP----ALEAALGVKLPNP 57
Y+P G +P D++ F M A EAA P
Sbjct: 220 VYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTP 265
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix;
HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB:
1kqa_A* 1kru_A* 1krv_A*
Length = 203
Score = 27.9 bits (63), Expect = 1.1
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 87 ARLLDKLVGEFLEETCINPTFICDH 111
L+ ++ E + P +
Sbjct: 48 ESLIKEMFATVGENAWVEPPVYFSY 72
>3to3_A Petrobactin biosynthesis protein ASBB; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
alpha-beta structure; HET: MSE ATP; 2.38A {Bacillus
anthracis}
Length = 619
Score = 27.7 bits (61), Expect = 2.2
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 84 RTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFE 133
R+L +LV + E I P I Q++ + D+ +T
Sbjct: 22 SVRRRVLRQLVESLIYEGIITPARIEKEEQILFLIQGLDEDNKSVTYECY 71
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction
with GP1BA, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 115
Score = 25.9 bits (57), Expect = 4.2
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 13/47 (27%)
Query: 6 MVKSTHGSYKVTYHPDGPE-------------SGSPVEIDFTPPFRR 39
+ + G+ VTY P P GSP T RR
Sbjct: 68 CIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAKITDDSRR 114
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 25.5 bits (56), Expect = 4.7
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 13/41 (31%)
Query: 11 HGSYKVTYHPDGPES-------------GSPVEIDFTPPFR 38
G+ KV+Y P P GSP + + R
Sbjct: 63 DGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVKISGEGR 103
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex,
phosphoprotein, disease mutation, immunoglobulin like,
zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10
PDB: 2brq_A* 2jf1_A 3isw_A
Length = 94
Score = 25.4 bits (56), Expect = 4.7
Identities = 8/38 (21%), Positives = 9/38 (23%), Gaps = 13/38 (34%)
Query: 12 GSYKVTYHPDGPE-------------SGSPVEIDFTPP 36
GS V Y P SP + P
Sbjct: 56 GSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 93
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 25.7 bits (56), Expect = 5.7
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 88 RLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRD 124
R+L+ + + C N T C+ + K ++
Sbjct: 96 RILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQG 132
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 105
Score = 25.1 bits (55), Expect = 7.5
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 13/38 (34%)
Query: 12 GSYKVTYHPDGPES-------------GSPVEIDFTPP 36
GS V+Y P + SP + P
Sbjct: 64 GSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVPVIAP 101
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A
{Escherichia coli} SCOP: b.81.1.3
Length = 182
Score = 25.5 bits (57), Expect = 7.8
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 87 ARLLDKLVGEFLEETCINPTFICDH 111
++L L G+ + E I PTF CD+
Sbjct: 46 QQILADLFGQ-VTEAYIEPTFRCDY 69
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 115
Score = 24.8 bits (54), Expect = 8.4
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 13/38 (34%)
Query: 12 GSYKVTYHPDGPE-------------SGSPVEIDFTPP 36
G+Y V+Y PD SP I P
Sbjct: 68 GTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPT 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.440
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,582,893
Number of extensions: 151027
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 38
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)