RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9364
         (156 letters)



>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
           {Escherichia coli, gene lysU [TaxId: 562]}
          Length = 342

 Score = 48.3 bits (114), Expect = 6e-08
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 30  EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
             DF  PF +L M  A++     K    T+    +       L     +         R+
Sbjct: 156 VFDFGKPFEKLTMREAIK-----KYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRI 210

Query: 90  LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
           + ++  E  E   I PTFI ++P  +SPLA+ +  +P +T+RFE F+  +E
Sbjct: 211 VTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGRE 261


>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
           {Thermus thermophilus, AspRS-2 [TaxId: 274]}
          Length = 304

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 74  VKHEVECPPPRTSARLLDKLVGEFLEETCI-NPTFICDHPQVMSPLAKWHRDHPGLTERF 132
           +K E+  P  +  +   ++L+GE+ +E    +  F+  +P+ + P   +     G T  F
Sbjct: 169 LKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPE-EDGTTRSF 227

Query: 133 ELFVMKKE 140
           +L     E
Sbjct: 228 DLLFRGLE 235


>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
          {Pseudomonas sp., strain 101 [TaxId: 306]}
          Length = 186

 Score = 27.6 bits (61), Expect = 0.58
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 3  VQGMVKS--THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVK 53
          V G  K+       K+ ++P G    +P  IDFTP      +  ++   LG++
Sbjct: 12 VDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPG----QLLGSVSGELGLR 60


>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
           (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
          Length = 356

 Score = 25.9 bits (56), Expect = 2.4
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 90  LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
           L +   E    T ++  F   HP+ +  L K           ++L +   E
Sbjct: 204 LLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRV--RALAYDLVLNGVE 252


>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
           106590]}
          Length = 129

 Score = 25.2 bits (55), Expect = 2.5
 Identities = 5/29 (17%), Positives = 8/29 (27%), Gaps = 1/29 (3%)

Query: 100 ETCINPTFIC-DHPQVMSPLAKWHRDHPG 127
           E    P F   D   ++  +       P 
Sbjct: 49  EMFGLPMFDLRDAAGILMEINNARNTFPN 77


>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 45

 Score = 23.4 bits (51), Expect = 3.3
 Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 77  EVECPPPRTSARLLDKLVGEFLEETCIN 104
           + + P   +   +L+ LV EF+ E    
Sbjct: 15  DDQNPYTES-VDILEDLVIEFITEMTHK 41


>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
          Length = 138

 Score = 24.8 bits (54), Expect = 4.0
 Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 1/34 (2%)

Query: 100 ETCINPTFIC-DHPQVMSPLAKWHRDHPGLTERF 132
           E    P F   D   V+  +    +       + 
Sbjct: 49  EIWGLPLFDVTDPAAVLFEINACRKARSNFYIKV 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 639,674
Number of extensions: 30167
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 10
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)