Query psy9365
Match_columns 98
No_of_seqs 158 out of 1008
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:15:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01585 G-patch: G-patch doma 99.7 2.9E-17 6.2E-22 96.4 4.6 45 39-83 1-45 (45)
2 smart00443 G_patch glycine ric 99.6 2.6E-15 5.6E-20 88.1 4.5 46 38-83 2-47 (47)
3 KOG2809|consensus 99.3 1.2E-12 2.7E-17 103.4 3.1 63 24-86 10-72 (326)
4 KOG0965|consensus 99.2 1.9E-11 4.1E-16 105.1 3.8 83 8-90 866-957 (988)
5 KOG2184|consensus 99.1 4E-11 8.6E-16 103.1 3.7 57 34-90 110-166 (767)
6 PF12656 G-patch_2: DExH-box s 99.0 6.7E-10 1.5E-14 71.8 3.7 46 40-85 30-75 (77)
7 KOG2384|consensus 98.9 7.3E-10 1.6E-14 83.3 2.4 57 37-95 125-181 (223)
8 KOG2185|consensus 98.9 2.4E-10 5.2E-15 93.1 -0.5 59 30-88 287-345 (486)
9 KOG3673|consensus 98.6 1.2E-08 2.5E-13 86.5 2.0 51 39-89 82-132 (845)
10 KOG1996|consensus 98.5 1.2E-07 2.6E-12 75.3 3.4 39 41-79 213-251 (378)
11 KOG1994|consensus 98.3 3.6E-07 7.7E-12 70.2 2.0 54 38-91 79-135 (268)
12 KOG0154|consensus 98.2 6.4E-07 1.4E-11 74.7 3.1 50 34-83 506-555 (573)
13 KOG4315|consensus 97.7 2.4E-05 5.1E-10 64.3 3.3 49 40-89 154-202 (455)
14 KOG4368|consensus 97.2 0.00022 4.7E-09 61.0 2.5 47 37-84 684-734 (757)
15 KOG2138|consensus 97.0 0.00052 1.1E-08 59.8 2.5 23 37-59 145-167 (883)
16 KOG1994|consensus 95.3 0.0068 1.5E-07 46.9 0.9 46 40-85 38-83 (268)
17 PF15337 Vasculin: Vascular pr 60.6 5 0.00011 27.1 1.2 13 43-55 12-24 (97)
18 PF13986 DUF4224: Domain of un 57.6 12 0.00026 21.7 2.4 28 12-53 1-30 (47)
19 PF08373 RAP: RAP domain; Int 26.6 38 0.00083 19.3 1.1 13 41-53 21-33 (58)
20 COG1715 Mrr Restriction endonu 26.6 57 0.0012 26.3 2.3 36 43-81 174-214 (308)
21 PF00446 GnRH: Gonadotropin-re 21.4 45 0.00098 13.7 0.5 6 50-55 5-10 (10)
No 1
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=99.69 E-value=2.9e-17 Score=96.40 Aligned_cols=45 Identities=44% Similarity=0.982 Sum_probs=43.0
Q ss_pred CCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeec
Q psy9365 39 SGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSK 83 (98)
Q Consensus 39 ~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~ 83 (98)
+++||++||++|||++|+|||++.+||++||++..+.++.|||++
T Consensus 1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~~ 45 (45)
T PF01585_consen 1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGAE 45 (45)
T ss_pred CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccCC
Confidence 479999999999999999999999999999999999999999974
No 2
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=99.58 E-value=2.6e-15 Score=88.08 Aligned_cols=46 Identities=50% Similarity=0.983 Sum_probs=43.3
Q ss_pred CCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeec
Q psy9365 38 VSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSK 83 (98)
Q Consensus 38 ~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~ 83 (98)
+++++|++||.+|||++|+|||++.+|+++||++..+.++.|||+.
T Consensus 2 ~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~~ 47 (47)
T smart00443 2 STSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGAE 47 (47)
T ss_pred CcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCCC
Confidence 4679999999999999999999999999999999999999999973
No 3
>KOG2809|consensus
Probab=99.30 E-value=1.2e-12 Score=103.45 Aligned_cols=63 Identities=33% Similarity=0.568 Sum_probs=55.0
Q ss_pred HHHHHhhhhhhcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCC
Q psy9365 24 QAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEEL 86 (98)
Q Consensus 24 ~a~~kr~~~~~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~ 86 (98)
|.|.--.+...|.++.+.||++||.+|||.+|.|||++.||++.||.|.++.+..|||++...
T Consensus 10 qk~~~dp~n~~w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~~n 72 (326)
T KOG2809|consen 10 QKIAVDPRNTAWSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADKNN 72 (326)
T ss_pred cccccCCccchhcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCccccc
Confidence 444444555667778899999999999999999999999999999999999999999998665
No 4
>KOG0965|consensus
Probab=99.16 E-value=1.9e-11 Score=105.13 Aligned_cols=83 Identities=28% Similarity=0.439 Sum_probs=63.9
Q ss_pred ccccccCCHHHHh----hchHHHHHh----hhhhhcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCcccccee-eeecCCc
Q psy9365 8 STEVRILTPQELA----AGSQAWARK----EQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSL-DIKFDRR 78 (98)
Q Consensus 8 ~~~~~~~~~~~l~----~g~~a~~kr----~~~~~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~-~~k~~~~ 78 (98)
-+.-.|+..+||+ ++.....+| ..+....+...|+|++||+||||++|+|||..++||.+||.+ ..+.++.
T Consensus 866 HhiGDflPpeEL~KFme~~~a~k~~rkpd~sdyke~KLt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~ 945 (988)
T KOG0965|consen 866 HHIGDFLPPEELAKFMERGRAMKKKRKPDDSDYKEQKLTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGW 945 (988)
T ss_pred cccCCcCCHHHHHHHHHhhhhhhhccCCChHHHHHhhccccchHHHHHHHhCccccccccccCcccccchhhcccccCCc
Confidence 4667899999999 333322222 234455667899999999999999999999999999999987 6778899
Q ss_pred eeeecCCCCCCC
Q psy9365 79 GLVSKEELPPQR 90 (98)
Q Consensus 79 GLG~~~~~~~~~ 90 (98)
|+|.+.....+.
T Consensus 946 G~G~s~pael~p 957 (988)
T KOG0965|consen 946 GWGGSQPAELQP 957 (988)
T ss_pred ccccCCccccCc
Confidence 999876654443
No 5
>KOG2184|consensus
Probab=99.12 E-value=4e-11 Score=103.08 Aligned_cols=57 Identities=35% Similarity=0.619 Sum_probs=51.7
Q ss_pred hcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCCCC
Q psy9365 34 EAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQR 90 (98)
Q Consensus 34 ~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~~~ 90 (98)
.+..++.+||.|||++|||++|+|||++.|||++||++.+++.+.|+|+-......+
T Consensus 110 ~~e~~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~e~~~s 166 (767)
T KOG2184|consen 110 DFEKGTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGFETEAS 166 (767)
T ss_pred hhhhcccchhHHHHHHcCCccccccCccccccccHHhcccCccCccccccccccccc
Confidence 456678999999999999999999999999999999999999999999987766654
No 6
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=98.96 E-value=6.7e-10 Score=71.85 Aligned_cols=46 Identities=41% Similarity=0.749 Sum_probs=43.5
Q ss_pred CcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCC
Q psy9365 40 GGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEE 85 (98)
Q Consensus 40 ~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~ 85 (98)
..||..||+-|||++++++|++.++.+.|+....|..+.|||+...
T Consensus 30 e~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~~ 75 (77)
T PF12656_consen 30 EEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKPA 75 (77)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCCC
Confidence 4799999999999999999999999999999999999999999764
No 7
>KOG2384|consensus
Probab=98.89 E-value=7.3e-10 Score=83.28 Aligned_cols=57 Identities=30% Similarity=0.568 Sum_probs=50.7
Q ss_pred CCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCCCCCCCCc
Q psy9365 37 PVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQRKNPYH 95 (98)
Q Consensus 37 ~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~~~~~~~~ 95 (98)
+..+|+|+++|.+.||.++.|||.+.+|+..||.+.++.++.|||++.. +.+..+|.
T Consensus 125 i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e~~--~~rVthfg 181 (223)
T KOG2384|consen 125 IKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTEID--QPRVTHFG 181 (223)
T ss_pred CCCCCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchhhc--cccccccc
Confidence 3468999999999999999999999999999999999999999999877 55555554
No 8
>KOG2185|consensus
Probab=98.88 E-value=2.4e-10 Score=93.13 Aligned_cols=59 Identities=29% Similarity=0.443 Sum_probs=50.9
Q ss_pred hhhhhcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCC
Q psy9365 30 EQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPP 88 (98)
Q Consensus 30 ~~~~~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~ 88 (98)
..+..|+.++-+||.|||.||||..|.|||++++||++||.+.+-+.+..|..+.+.++
T Consensus 287 ~~fakWe~hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~grSLDecme~kq 345 (486)
T KOG2185|consen 287 ALFAKWENHTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPAGRSLDECMEEKQ 345 (486)
T ss_pred HHHhhhccccchHHHHHHHHhchhhccccCcCCCccccchhhhhccCCCCHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999888877776654433
No 9
>KOG3673|consensus
Probab=98.64 E-value=1.2e-08 Score=86.47 Aligned_cols=51 Identities=31% Similarity=0.508 Sum_probs=46.2
Q ss_pred CCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCCC
Q psy9365 39 SGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQ 89 (98)
Q Consensus 39 ~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~~ 89 (98)
.+++..+||.|||++.|+||||.+||+.+||.+.....|.|||.......+
T Consensus 82 y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l~~~~~ 132 (845)
T KOG3673|consen 82 YLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNLKATAR 132 (845)
T ss_pred cchHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccchhhhh
Confidence 678999999999999999999999999999999999999999988644333
No 10
>KOG1996|consensus
Probab=98.46 E-value=1.2e-07 Score=75.27 Aligned_cols=39 Identities=33% Similarity=0.655 Sum_probs=36.1
Q ss_pred cHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCce
Q psy9365 41 GMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRG 79 (98)
Q Consensus 41 ~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~G 79 (98)
.++++||+||||++|+||||++||+..++.++....|.|
T Consensus 213 tvA~~im~k~G~keGqGLGKsEQGlsTalsveKT~~rgG 251 (378)
T KOG1996|consen 213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVEKTSKRGG 251 (378)
T ss_pred hHHHHHHHHhCcccccCcCccccccccceeeeeccccCc
Confidence 467999999999999999999999999999988877877
No 11
>KOG1994|consensus
Probab=98.28 E-value=3.6e-07 Score=70.17 Aligned_cols=54 Identities=30% Similarity=0.532 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHhcCCCCCCCCCCCCCC---ccccceeeeecCCceeeecCCCCCCCC
Q psy9365 38 VSGGMGMHLLQKMGWQPGEGLGKNKEG---TVQPLSLDIKFDRRGLVSKEELPPQRK 91 (98)
Q Consensus 38 ~~~~~G~kmL~kmGw~~G~GLGk~~qG---i~~PI~~~~k~~~~GLG~~~~~~~~~~ 91 (98)
-..++|+.+|.+|||++|.-||+...+ +++||.+.++..+.|+|.+....+.+.
T Consensus 79 ~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~ed~~~~~~~ 135 (268)
T KOG1994|consen 79 RAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDEDLYNPGED 135 (268)
T ss_pred cccCcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCcccccccccc
Confidence 378999999999999999999999999 999999999999999999877666554
No 12
>KOG0154|consensus
Probab=98.25 E-value=6.4e-07 Score=74.69 Aligned_cols=50 Identities=34% Similarity=0.636 Sum_probs=47.1
Q ss_pred hcCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeec
Q psy9365 34 EAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSK 83 (98)
Q Consensus 34 ~~~~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~ 83 (98)
..++.++|+|.+||++|||.+|+|||+..+|+.+||+...+..+.|||+.
T Consensus 506 ~~~~~~sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~~~~~~~~lg~~ 555 (573)
T KOG0154|consen 506 EPPIDTSNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAEGRDRGAGLGAK 555 (573)
T ss_pred cccCCCCccchhhhhccCcccccccccccCCCcccccccccccCCCCCcc
Confidence 44567899999999999999999999999999999999999999999998
No 13
>KOG4315|consensus
Probab=97.74 E-value=2.4e-05 Score=64.32 Aligned_cols=49 Identities=37% Similarity=0.714 Sum_probs=40.0
Q ss_pred CcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCCCCCC
Q psy9365 40 GGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEELPPQ 89 (98)
Q Consensus 40 ~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~~~~~ 89 (98)
..||..||+-|||++|.|+|++.|+ +.+....+++...|||+....++.
T Consensus 154 e~FGlAmLrG~GWkpg~gigk~~q~-v~~~~~~~rpkglGLGa~~~~~~~ 202 (455)
T KOG4315|consen 154 EGFGLAMLRGMGWKPGPGIGKNKQD-VKIKEPFLRPKGLGLGADPALKPK 202 (455)
T ss_pred hHHHHHHHhcCCCCCCCCcCcCCcc-ccccccccCCCCcccCCCcccccc
Confidence 5799999999999999999999555 444445789999999999665543
No 14
>KOG4368|consensus
Probab=97.20 E-value=0.00022 Score=61.04 Aligned_cols=47 Identities=30% Similarity=0.573 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHhcCCCCCCCCCCCCCCcccccee-eeec---CCceeeecC
Q psy9365 37 PVSGGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSL-DIKF---DRRGLVSKE 84 (98)
Q Consensus 37 ~~~~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~-~~k~---~~~GLG~~~ 84 (98)
+.++|+|.+||.||||. |.|||..++||.+||.. .++. -.+|+|+..
T Consensus 684 lse~NKGhQml~KMGWs-G~GLGak~qGI~DPiSGGEVRdR~E~yKGvG~~l 734 (757)
T KOG4368|consen 684 LGEENKGHQMLVKMGWS-GSGLGAKEQGIQDPISGGEVRDRWEQYKGVGVAL 734 (757)
T ss_pred cccccchhhhHhhcCcc-cCCcccccccccCcccCccccchhhhhcccCccc
Confidence 46899999999999999 99999999999999965 3443 367888765
No 15
>KOG2138|consensus
Probab=96.95 E-value=0.00052 Score=59.77 Aligned_cols=23 Identities=52% Similarity=1.230 Sum_probs=21.0
Q ss_pred CCCCcHHHHHHHhcCCCCCCCCC
Q psy9365 37 PVSGGMGMHLLQKMGWQPGEGLG 59 (98)
Q Consensus 37 ~~~~~~G~kmL~kmGw~~G~GLG 59 (98)
++..+||.+||.+|||++|+|+|
T Consensus 145 Pvs~sIgvrlLrsMGWr~GqgIg 167 (883)
T KOG2138|consen 145 PVSDSIGVRLLRSMGWREGQGIG 167 (883)
T ss_pred hhhhhHHHHHHHHhcCccCCCcC
Confidence 34688999999999999999999
No 16
>KOG1994|consensus
Probab=95.32 E-value=0.0068 Score=46.89 Aligned_cols=46 Identities=22% Similarity=0.470 Sum_probs=42.1
Q ss_pred CcHHHHHHHhcCCCCCCCCCCCCCCccccceeeeecCCceeeecCC
Q psy9365 40 GGMGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIKFDRRGLVSKEE 85 (98)
Q Consensus 40 ~~~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k~~~~GLG~~~~ 85 (98)
..++++||.-|||+++.-||.+..-+.+|+++-.+..+.||+++..
T Consensus 38 ~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~e~~ 83 (268)
T KOG1994|consen 38 MRREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRAEKP 83 (268)
T ss_pred hhhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccccCc
Confidence 4578899999999999999999999999999999999999988754
No 17
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=60.64 E-value=5 Score=27.15 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=11.0
Q ss_pred HHHHHHhcCCCCC
Q psy9365 43 GMHLLQKMGWQPG 55 (98)
Q Consensus 43 G~kmL~kmGw~~G 55 (98)
-+++|+.|||++-
T Consensus 12 EhRLLk~MGWqEy 24 (97)
T PF15337_consen 12 EHRLLKAMGWQEY 24 (97)
T ss_pred HHHHHHHhccccc
Confidence 4789999999973
No 18
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=57.58 E-value=12 Score=21.69 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=18.9
Q ss_pred ccCCHHHHh--hchHHHHHhhhhhhcCCCCCcHHHHHHHhcCCC
Q psy9365 12 RILTPQELA--AGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQ 53 (98)
Q Consensus 12 ~~~~~~~l~--~g~~a~~kr~~~~~~~~~~~~~G~kmL~kmGw~ 53 (98)
.|||.+||+ +|+.-.+ .=.+.|++|||.
T Consensus 1 ~fLT~~El~elTG~k~~~--------------~Q~~~L~~~Gi~ 30 (47)
T PF13986_consen 1 EFLTDEELQELTGYKRPS--------------KQIRWLRRNGIP 30 (47)
T ss_pred CCCCHHHHHHHHCCCCHH--------------HHHHHHHHCCCe
Confidence 479999999 7776322 234567778764
No 19
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=26.63 E-value=38 Score=19.34 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=10.5
Q ss_pred cHHHHHHHhcCCC
Q psy9365 41 GMGMHLLQKMGWQ 53 (98)
Q Consensus 41 ~~G~kmL~kmGw~ 53 (98)
.+=.++|++|||+
T Consensus 21 ~lk~r~L~~~G~~ 33 (58)
T PF08373_consen 21 KLKHRHLKALGYK 33 (58)
T ss_pred HHHHHHHHHCCCE
Confidence 4567899999996
No 20
>COG1715 Mrr Restriction endonuclease [Defense mechanisms]
Probab=26.56 E-value=57 Score=26.28 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=25.3
Q ss_pred HHHHHHhcCCC-----CCCCCCCCCCCccccceeeeecCCceee
Q psy9365 43 GMHLLQKMGWQ-----PGEGLGKNKEGTVQPLSLDIKFDRRGLV 81 (98)
Q Consensus 43 G~kmL~kmGw~-----~G~GLGk~~qGi~~PI~~~~k~~~~GLG 81 (98)
--.+|.+|||. .++-+|+.++|-.+=| ++.+..||-
T Consensus 174 vvdvl~rmGYgg~~~~~~~~vg~sGDgGIdGi---I~~D~Lgld 214 (308)
T COG1715 174 VVDVLERMGYGGSRRDAGQRVGYTGDGGIDGI---IKEDPLGLD 214 (308)
T ss_pred HHHHHHHhcCCccccchhhhccccCCCCccce---eecccCCCe
Confidence 35689999998 6788999888755443 455665553
No 21
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=21.42 E-value=45 Score=13.73 Aligned_cols=6 Identities=67% Similarity=1.951 Sum_probs=3.5
Q ss_pred cCCCCC
Q psy9365 50 MGWQPG 55 (98)
Q Consensus 50 mGw~~G 55 (98)
.||++|
T Consensus 5 ~~w~PG 10 (10)
T PF00446_consen 5 HGWKPG 10 (10)
T ss_pred cccCCC
Confidence 466654
Done!