Query psy9365
Match_columns 98
No_of_seqs 158 out of 1008
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:15:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q02_A Sequestosome 1; helical 8.6 1.5E+02 0.0051 17.0 1.3 15 43-57 13-27 (52)
2 4gqb_C Histone H4 peptide; TIM 8.4 1.2E+02 0.0042 14.7 0.8 9 54-62 7-15 (26)
3 3mgd_A Predicted acetyltransfe 8.4 2.8E+02 0.0096 16.1 2.7 16 39-54 125-140 (157)
4 4anr_A Soluble lytic transglyc 8.1 1.7E+02 0.006 22.4 1.9 19 43-61 213-231 (323)
5 3ayf_A Nitric oxide reductase; 7.6 1.7E+02 0.0059 25.0 1.8 32 1-32 51-82 (800)
6 3gva_A Alkyltransferase-like p 7.3 1.2E+02 0.0043 19.7 0.6 10 47-56 101-110 (116)
7 2gcx_A FEOA, ferrous iron tran 6.9 2E+02 0.0069 16.2 1.4 42 43-84 22-64 (75)
8 1qus_A Lytic murein transglyco 6.5 2.3E+02 0.008 21.5 1.9 18 43-60 217-234 (322)
9 1wfw_A Kalirin-9A; SH3 domain, 6.0 52 0.0018 20.3 -1.7 14 47-60 54-67 (74)
10 3da7_A Barnase circular permut 5.8 2.4E+02 0.0082 18.5 1.4 16 42-57 70-85 (111)
No 1
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=8.60 E-value=1.5e+02 Score=17.01 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=10.6
Q ss_pred HHHHHHhcCCCCCCC
Q psy9365 43 GMHLLQKMGWQPGEG 57 (98)
Q Consensus 43 G~kmL~kmGw~~G~G 57 (98)
....|..|||....|
T Consensus 13 al~qMl~MGF~negG 27 (52)
T 1q02_A 13 SLSQMLSMGFSDEGG 27 (52)
T ss_dssp HHHHHHTTTCCCTTS
T ss_pred HHHHHHHcCCCcccc
Confidence 456789999985433
No 2
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=8.44 E-value=1.2e+02 Score=14.74 Aligned_cols=9 Identities=56% Similarity=0.959 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q psy9365 54 PGEGLGKNK 62 (98)
Q Consensus 54 ~G~GLGk~~ 62 (98)
-|+|||+-.
T Consensus 7 ggkglgkgg 15 (26)
T 4gqb_C 7 GGKGLGKGG 15 (26)
T ss_pred CCcccCccc
Confidence 467777643
No 3
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Probab=8.42 E-value=2.8e+02 Score=16.07 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=12.7
Q ss_pred CCcHHHHHHHhcCCCC
Q psy9365 39 SGGMGMHLLQKMGWQP 54 (98)
Q Consensus 39 ~~~~G~kmL~kmGw~~ 54 (98)
.+.-..++.+++||+.
T Consensus 125 ~n~~a~~~y~k~GF~~ 140 (157)
T 3mgd_A 125 ASKLGRPVYKKYGFQD 140 (157)
T ss_dssp CCTTHHHHHHHHTCCC
T ss_pred eCcccHHHHHHcCCee
Confidence 3456788999999985
No 4
>4anr_A Soluble lytic transglycosylase B; lyase, EF-hand like motif, peptidoglycan; 1.84A {Pseudomonas aeruginosa}
Probab=8.11 E-value=1.7e+02 Score=22.38 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCCCCCCCCC
Q psy9365 43 GMHLLQKMGWQPGEGLGKN 61 (98)
Q Consensus 43 G~kmL~kmGw~~G~GLGk~ 61 (98)
....|.+.||+.|+.-|.+
T Consensus 213 ~AnyL~~~GW~~g~pwg~e 231 (323)
T 4anr_A 213 VASYFKQHGWVTGEPVVSV 231 (323)
T ss_dssp HHHHHHHTTCCTTCCCEEE
T ss_pred HHHHHHHcCCCCCCCeEEE
Confidence 5678999999998776644
No 5
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=7.59 E-value=1.7e+02 Score=25.04 Aligned_cols=32 Identities=9% Similarity=0.265 Sum_probs=27.4
Q ss_pred CCCccccccccccCCHHHHhhchHHHHHhhhh
Q psy9365 1 MPGQFTGSTEVRILTPQELAAGSQAWARKEQF 32 (98)
Q Consensus 1 ~pg~~~g~~~~~~~~~~~l~~g~~a~~kr~~~ 32 (98)
+|=++.+..|..++|++|+..|...|.++...
T Consensus 51 iP~~vv~~~G~~l~T~~dI~~Gq~~~q~~g~m 82 (800)
T 3ayf_A 51 RPKEVRSESGEVLMTKETIIGGQAVFQKYGLM 82 (800)
T ss_dssp CCSEEECTTCCEEEEHHHHHHHHHHHHHTTGG
T ss_pred CCceeECCCCCEEecHHHHHHhHHHHHHcCCc
Confidence 46678888899999999999999999988754
No 6
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=7.25 E-value=1.2e+02 Score=19.70 Aligned_cols=10 Identities=40% Similarity=1.046 Sum_probs=6.1
Q ss_pred HHhcCCCCCC
Q psy9365 47 LQKMGWQPGE 56 (98)
Q Consensus 47 L~kmGw~~G~ 56 (98)
|...||++|.
T Consensus 101 l~~~~~~~~~ 110 (116)
T 3gva_A 101 LPEYMWKPGS 110 (116)
T ss_dssp HHHHBCCC--
T ss_pred HHHhCCCCCC
Confidence 4568898875
No 7
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=6.93 E-value=2e+02 Score=16.19 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCCCCCCCCC-CccccceeeeecCCceeeecC
Q psy9365 43 GMHLLQKMGWQPGEGLGKNKE-GTVQPLSLDIKFDRRGLVSKE 84 (98)
Q Consensus 43 G~kmL~kmGw~~G~GLGk~~q-Gi~~PI~~~~k~~~~GLG~~~ 84 (98)
=.+-|..||+.+|.=+=--.. ....|+.+.++..+.-|+...
T Consensus 22 ~~~rL~~lGl~pG~~v~v~~~~p~~gpi~v~v~~~~iaL~~~~ 64 (75)
T 2gcx_A 22 YRQKLLSLGMLPGSSFHVVRVAPLGDPVHIETRRVSLVLRKKD 64 (75)
T ss_dssp HHHHHTTTTCCSSEEEEECCCCSSCCEEEEEETTEEEEEETTT
T ss_pred HHHHHHHCCCCCCCEEEEEEeCCCCCCEEEEECCEEEEcCHHH
Confidence 356788999999876644333 345788887765555555443
No 8
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A* 1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Probab=6.51 E-value=2.3e+02 Score=21.52 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCCCCCCCC
Q psy9365 43 GMHLLQKMGWQPGEGLGK 60 (98)
Q Consensus 43 G~kmL~kmGw~~G~GLGk 60 (98)
+...|.++||+.|..-|.
T Consensus 217 ~A~YL~~~Gw~~g~~wg~ 234 (322)
T 1qus_A 217 VANYFKAHGWVKGDQVAV 234 (322)
T ss_dssp HHHHHHHTTCCTTCCSEE
T ss_pred HHHHHHHcCCCCCCceeE
Confidence 567999999999887653
No 9
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=5.96 E-value=52 Score=20.28 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=11.7
Q ss_pred HHhcCCCCCCCCCC
Q psy9365 47 LQKMGWQPGEGLGK 60 (98)
Q Consensus 47 L~kmGw~~G~GLGk 60 (98)
+..|||.+|.=||.
T Consensus 54 paaegWvPG~vLg~ 67 (74)
T 1wfw_A 54 PAAEGWVPGSILAP 67 (74)
T ss_dssp SSEEEEEEGGGCCB
T ss_pred ccccCcccccEecc
Confidence 46799999998886
No 10
>3da7_A Barnase circular permutant; circular permutant, protein-protein complex, endonuclease, cytoplasm, protein binding; 2.25A {Bacillus amyloliquefaciens}
Probab=5.83 E-value=2.4e+02 Score=18.48 Aligned_cols=16 Identities=25% Similarity=0.599 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCCCCCC
Q psy9365 42 MGMHLLQKMGWQPGEG 57 (98)
Q Consensus 42 ~G~kmL~kmGw~~G~G 57 (98)
+-.+-.+++||.+++|
T Consensus 70 ITK~eA~~~GW~~~kg 85 (111)
T 3da7_A 70 ITKSEAQALGWVASKG 85 (111)
T ss_dssp ECHHHHHHTTCCTTTT
T ss_pred eeHHHHHHcCCCCCCC
Confidence 4556688999998764
Done!