Query psy9365
Match_columns 98
No_of_seqs 158 out of 1008
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 17:15:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9365.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9365hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrsb2 d.230.4.1 (B:33-84) D- 14.7 38 0.0027 18.2 1.5 13 42-54 19-31 (52)
2 d2a6aa1 c.55.1.9 (A:1-103) Hyp 13.6 18 0.0013 21.0 -0.0 8 2-9 64-71 (103)
3 d1r7aa1 b.71.1.1 (A:435-504) S 11.4 41 0.003 18.9 1.1 27 51-80 30-56 (70)
4 d1okja1 c.55.1.9 (A:1-106) Hyp 10.9 25 0.0018 20.5 -0.0 8 2-9 64-71 (106)
5 d1vr5a1 c.94.1.1 (A:23-557) Ol 10.5 1.2E+02 0.0084 21.3 3.6 33 42-74 328-360 (535)
6 d2ccqa1 d.314.1.1 (A:11-109) N 9.4 48 0.0035 19.5 0.9 13 43-55 61-73 (99)
7 d2p10a1 c.1.12.9 (A:8-204) Unc 9.2 86 0.0063 20.3 2.3 40 14-53 3-42 (197)
8 d2k0bx1 a.5.2.1 (X:1-52) Seque 9.1 61 0.0045 17.3 1.2 16 42-57 12-27 (52)
9 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 8.2 64 0.0047 16.7 1.0 16 39-54 11-26 (51)
10 d2gcxa1 b.34.1.2 (A:1-75) Ferr 6.7 76 0.0055 17.4 0.9 41 45-85 24-65 (75)
No 1
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=14.68 E-value=38 Score=18.20 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCCC
Q psy9365 42 MGMHLLQKMGWQP 54 (98)
Q Consensus 42 ~G~kmL~kmGw~~ 54 (98)
-+.+++.|||+.+
T Consensus 19 AAk~la~kMGl~~ 31 (52)
T d1xrsb2 19 AAKQIALKMGLEE 31 (52)
T ss_dssp HHHHHHHTTSSCC
T ss_pred HHHHHHHHhCCCc
Confidence 3567999998874
No 2
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=13.58 E-value=18 Score=20.95 Aligned_cols=8 Identities=50% Similarity=0.916 Sum_probs=6.3
Q ss_pred CCcccccc
Q psy9365 2 PGQFTGST 9 (98)
Q Consensus 2 pg~~~g~~ 9 (98)
||.|||-+
T Consensus 64 PGsfTglR 71 (103)
T d2a6aa1 64 PGGLTGLR 71 (103)
T ss_dssp SSCHHHHH
T ss_pred CCcchhHH
Confidence 88888865
No 3
>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}
Probab=11.43 E-value=41 Score=18.86 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCccccceeeeecCCcee
Q psy9365 51 GWQPGEGLGKNKEGTVQPLSLDIKFDRRGL 80 (98)
Q Consensus 51 Gw~~G~GLGk~~qGi~~PI~~~~k~~~~GL 80 (98)
=|.+++|||-++. .||..-.+.+.+|=
T Consensus 30 TFeP~~GlGv~Nt---~~VA~L~W~D~aG~ 56 (70)
T d1r7aa1 30 TFEPKRGLGVDNT---TPVAMLEWEDSAGD 56 (70)
T ss_dssp EECGGGSCSTTCC---SCCEEEEEEETTEE
T ss_pred EEcCCccccccCC---ceeeEEEEeccCCC
Confidence 3788999998764 45555556665553
No 4
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=10.93 E-value=25 Score=20.51 Aligned_cols=8 Identities=63% Similarity=1.219 Sum_probs=5.9
Q ss_pred CCcccccc
Q psy9365 2 PGQFTGST 9 (98)
Q Consensus 2 pg~~~g~~ 9 (98)
||.|||-+
T Consensus 64 PGsfTglR 71 (106)
T d1okja1 64 PGSFTGVR 71 (106)
T ss_dssp SSCHHHHH
T ss_pred cCccccch
Confidence 88888843
No 5
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]}
Probab=10.50 E-value=1.2e+02 Score=21.30 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCccccceeeee
Q psy9365 42 MGMHLLQKMGWQPGEGLGKNKEGTVQPLSLDIK 74 (98)
Q Consensus 42 ~G~kmL~kmGw~~G~GLGk~~qGi~~PI~~~~k 74 (98)
.+.++|++.||+...+-|.......+|+.+.+.
T Consensus 328 kA~~lL~~aG~~~~~~~g~~~~~~g~~l~~~i~ 360 (535)
T d1vr5a1 328 MAKKILDELGFKDVNKDGFREDPNGKPFKLTIE 360 (535)
T ss_dssp HHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEE
T ss_pred HHHHHHHHcCccccCCccccccccccccccccc
Confidence 578899999998766655555444555555443
No 6
>d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.37 E-value=48 Score=19.47 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=10.8
Q ss_pred HHHHHHhcCCCCC
Q psy9365 43 GMHLLQKMGWQPG 55 (98)
Q Consensus 43 G~kmL~kmGw~~G 55 (98)
+..+|..+||.++
T Consensus 61 a~e~L~~~GF~e~ 73 (99)
T d2ccqa1 61 AVECLFEMGFEEG 73 (99)
T ss_dssp HHHHHHHHTCEEC
T ss_pred HHHHHHHcCceeC
Confidence 5679999999863
No 7
>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]}
Probab=9.24 E-value=86 Score=20.31 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=28.8
Q ss_pred CCHHHHhhchHHHHHhhhhhhcCCCCCcHHHHHHHhcCCC
Q psy9365 14 LTPQELAAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQ 53 (98)
Q Consensus 14 ~~~~~l~~g~~a~~kr~~~~~~~~~~~~~G~kmL~kmGw~ 53 (98)
.|.+|+.....+..++......+...+.+..+|.++.||+
T Consensus 3 ~tr~e~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfd 42 (197)
T d2p10a1 3 PTRSELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDID 42 (197)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCC
Confidence 4667777656555555555555556789999999999976
No 8
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.10 E-value=61 Score=17.28 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCCCCCC
Q psy9365 42 MGMHLLQKMGWQPGEG 57 (98)
Q Consensus 42 ~G~kmL~kmGw~~G~G 57 (98)
-...-|..|||....|
T Consensus 12 ~al~qM~aMGFsneGG 27 (52)
T d2k0bx1 12 ESLSQMLSMGFSDEGG 27 (52)
T ss_dssp HHHHHHHHHTCCCSSS
T ss_pred HHHHHHHHcCCCCcch
Confidence 3556788999985433
No 9
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.18 E-value=64 Score=16.73 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=10.7
Q ss_pred CCcHHHHHHHhcCCCC
Q psy9365 39 SGGMGMHLLQKMGWQP 54 (98)
Q Consensus 39 ~~~~G~kmL~kmGw~~ 54 (98)
.+.-....|..|||.+
T Consensus 11 ~~~~~l~~L~~MGF~~ 26 (51)
T d2cpwa1 11 KHGSALDVLLSMGFPR 26 (51)
T ss_dssp SCCCHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHcCCCH
Confidence 3444566788899964
No 10
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.68 E-value=76 Score=17.42 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=27.8
Q ss_pred HHHHhcCCCCCCCCCCCCC-CccccceeeeecCCceeeecCC
Q psy9365 45 HLLQKMGWQPGEGLGKNKE-GTVQPLSLDIKFDRRGLVSKEE 85 (98)
Q Consensus 45 kmL~kmGw~~G~GLGk~~q-Gi~~PI~~~~k~~~~GLG~~~~ 85 (98)
+=|..||+.+|.-+=.-.. ....|+.+.+......|+.+..
T Consensus 24 ~RL~~mGl~pG~~V~v~~~ap~g~P~~i~v~~~~iaLr~~~A 65 (75)
T d2gcxa1 24 QKLLSLGMLPGSSFHVVRVAPLGDPVHIETRRVSLVLRKKDL 65 (75)
T ss_dssp HHHTTTTCCSSEEEEECCCCSSCCEEEEEETTEEEEEETTTT
T ss_pred HHHHHcCCCCCCEEEEEEECCCCCCEEEEECCEEEEECHHHh
Confidence 3488899999876654443 3457888887776666665543
Done!