RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9365
(98 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 1e-04
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 23/89 (25%)
Query: 7 GSTEVRILTPQEL-AAGSQAWARKEQFVEAAPVSGGMGMHLLQKMGWQPGEGLGKNKEGT 65
GS E +L P SQ +EQF + P +P EG + E
Sbjct: 14 GSLEHVLLVPTASFFIASQ---LQEQFNKILP---------------EPTEGFAADDE-P 54
Query: 66 VQPLSLDIKFDRRGLVSKEELPPQRKNPY 94
P L KF G VS + P + +
Sbjct: 55 TTPAELVGKF--LGYVS-SLVEPSKVGQF 80
Score = 31.2 bits (70), Expect = 0.039
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 27/71 (38%)
Query: 22 GSQAWARKEQFVEAAPVSGGMGMHLLQ-----KMGWQPGEGLGKNKEG-------TVQPL 69
GSQ EQ GMGM L + + W + K+ G P+
Sbjct: 1625 GSQ-----EQ---------GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV 1670
Query: 70 SLDIKFD-RRG 79
+L I F +G
Sbjct: 1671 NLTIHFGGEKG 1681
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 25.6 bits (57), Expect = 3.1
Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 5 FTGSTEV-RILTPQ 17
FTGST +IL
Sbjct: 234 FTGSTTTGKILLHH 247
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 25.6 bits (57), Expect = 3.2
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 5 FTGSTEV-RILTPQ 17
FTGSTE+ R L Q
Sbjct: 230 FTGSTEIGRQLMEQ 243
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 25.6 bits (57), Expect = 3.2
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 5 FTGSTEV-RILTPQ 17
FTGST V R+L Q
Sbjct: 233 FTGSTAVGRLLMAQ 246
>3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu
genomics, PSI-2, protein structure initiative; HET: MSE;
2.52A {Vibrio parahaemolyticus}
Length = 150
Score = 25.1 bits (55), Expect = 3.3
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 75 FDRRG--LVSKEELPPQRKNPYHVQ 97
F +G V + LP ++ Y+ Q
Sbjct: 116 FREQGFYEVGVDYLPGAKQGLYNFQ 140
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 25.2 bits (56), Expect = 3.6
Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Query: 5 FTGSTEV-RILTPQ 17
FTGSTEV R+L Q
Sbjct: 253 FTGSTEVGRLLMAQ 266
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 25.2 bits (56), Expect = 4.4
Identities = 9/14 (64%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 5 FTGSTEV-RILTPQ 17
FTGSTEV R L
Sbjct: 232 FTGSTEVGRKLIVD 245
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN
five-stranded antiparallel beta-sheet, hydrolase; HET:
BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A*
1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Length = 322
Score = 25.0 bits (55), Expect = 4.9
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 45 HLLQKMGWQPGEGLGKNKEGTVQPLSLDIK-------FDRRGLVSKEELPPQRK 91
+ + GW G+ + G L K GL ++ L ++
Sbjct: 219 NYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQ 272
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 24.8 bits (55), Expect = 5.1
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 75 FDRRG--LVSKEELPPQRKNPYHVQ 97
F RG S++ELP R+ Y
Sbjct: 419 FAERGFQTASEDELPETRRKDYRSN 443
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 24.8 bits (55), Expect = 6.2
Identities = 4/14 (28%), Positives = 6/14 (42%), Gaps = 1/14 (7%)
Query: 5 FTGSTEV-RILTPQ 17
TGST + +
Sbjct: 233 MTGSTVAGKQIYKT 246
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 24.1 bits (53), Expect = 9.7
Identities = 6/14 (42%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 5 FTGSTEV-RILTPQ 17
FTGST+V + +
Sbjct: 245 FTGSTQVGKQVGLM 258
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 24.1 bits (53), Expect = 9.8
Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 5 FTGSTEV-RILTPQ 17
FTGST V R +
Sbjct: 229 FTGSTAVGRHIGEI 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.398
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,533,847
Number of extensions: 78392
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 34
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)