Query psy9368
Match_columns 179
No_of_seqs 15 out of 17
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 17:20:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kf8_B Protein TEN1; OB fold; 6.6 3.6E+02 0.012 20.8 3.1 24 146-169 81-104 (123)
2 3ro2_B Peptide of nuclear mito 5.2 1.2E+02 0.004 18.3 -0.4 6 149-154 3-8 (28)
3 3ffy_A Putative tetrapyrrole ( 5.1 3.2E+02 0.011 19.3 1.8 13 141-154 40-52 (115)
4 3e9t_A Na/Ca exchange protein; 5.0 3.9E+02 0.013 18.7 2.2 21 145-165 56-76 (114)
5 3k1i_C HP1076, putative unchar 4.9 5.9E+02 0.02 20.7 3.5 33 142-176 99-137 (178)
6 3lxr_F IPGB2; RHOA, GTPase, GE 4.8 2.1E+02 0.0073 23.7 0.8 22 145-166 28-49 (192)
7 1nro_R Receptor based peptide 4.5 2E+02 0.0068 17.1 0.3 9 164-172 1-9 (27)
8 3ead_A Na/Ca exchange protein; 4.0 5E+02 0.017 18.7 2.2 21 145-165 58-78 (137)
9 3fso_A Integrin beta-4, GP150; 4.0 6.1E+02 0.021 18.0 2.6 20 145-164 59-78 (123)
10 3i9v_7 NADH-quinone oxidoreduc 3.9 7E+02 0.024 19.4 3.1 26 142-167 49-75 (129)
No 1
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=6.63 E-value=3.6e+02 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.3
Q ss_pred eEEEEeeccceeeEEEeccCCchh
Q psy9368 146 TVITFYMGQSTQTFSISTLSPRPI 169 (179)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~ 169 (179)
.|+.||-|.+-+-..|+.+...-+
T Consensus 81 NI~GyynGe~i~~i~i~~vNgs~~ 104 (123)
T 3kf8_B 81 NIDAFYDGESINPVDIYEVNGANF 104 (123)
T ss_dssp EEEEEECSSCEEEEEEEECCGGGC
T ss_pred EEEEEecCccccEEEEEeecccce
Confidence 578999999999999998876543
No 2
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=5.22 E-value=1.2e+02 Score=18.31 Aligned_cols=6 Identities=67% Similarity=1.508 Sum_probs=4.1
Q ss_pred EEeecc
Q psy9368 149 TFYMGQ 154 (179)
Q Consensus 149 ~~~~~~ 154 (179)
+||||-
T Consensus 3 s~ymgt 8 (28)
T 3ro2_B 3 SFYMGT 8 (28)
T ss_dssp -CCCCS
T ss_pred ceeecc
Confidence 689985
No 3
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=5.07 E-value=3.2e+02 Score=19.30 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=8.1
Q ss_pred ccCCceEEEEeecc
Q psy9368 141 AKLPRTVITFYMGQ 154 (179)
Q Consensus 141 ~~~~~~~~~~~~~~ 154 (179)
++..+|+| ||||-
T Consensus 40 a~~~~TlV-fyesp 52 (115)
T 3ffy_A 40 VDEHRTMV-FYESP 52 (115)
T ss_dssp TTCCSEEE-EEECT
T ss_pred hCCCCeEE-EEech
Confidence 44566654 88864
No 4
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=4.97 E-value=3.9e+02 Score=18.70 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.6
Q ss_pred ceEEEEeeccceeeEEEeccC
Q psy9368 145 RTVITFYMGQSTQTFSISTLS 165 (179)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ 165 (179)
...++|--|+..++|+|..+.
T Consensus 56 ~g~l~F~~Get~k~i~V~I~d 76 (114)
T 3e9t_A 56 KGLLSFPPGVDEQRFRIEVID 76 (114)
T ss_dssp EEEEEECTTCCEEEEEEEBCC
T ss_pred ceEEEEeCCcEEEEEEEEEEc
Confidence 357899999999999997664
No 5
>3k1i_C HP1076, putative uncharacterized protein; CO-chaperone, chaperone, flagellar system, helicobacter PYLO flagellum; 2.70A {Helicobacter pylori}
Probab=4.90 E-value=5.9e+02 Score=20.73 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=22.3
Q ss_pred cCCceEEEEeeccceeeEEEeccCCchh------hhhhhhh
Q psy9368 142 KLPRTVITFYMGQSTQTFSISTLSPRPI------LLSYLFA 176 (179)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 176 (179)
+|=.+-+.|++|+. +||++--+|-.+ |+.||-.
T Consensus 99 ~LFg~~ls~~~g~~--~~s~~l~nPl~ll~~~~~l~aYi~~ 137 (178)
T 3k1i_C 99 PLFDTQLNIAINDE--IFSMIVVNPLDLLENVGEFQAYLEE 137 (178)
T ss_dssp ECTTSEEEEEETTE--EEEEECCCTTTTSSSHHHHHHHHHH
T ss_pred cccCceeEEEECCc--eEEEecCChHHHHhhhhHHHHHHHH
Confidence 34456789999977 566666666666 5677643
No 6
>3lxr_F IPGB2; RHOA, GTPase, GEF, GEF-GTPase-complex, WXXXE, TTSS EF protein, bacterial GEF, cytoskeleton dynamics; HET: GDP; 1.68A {Shigella flexneri} PDB: 3lwn_F* 3lw8_E* 3lyq_A*
Probab=4.81 E-value=2.1e+02 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=17.9
Q ss_pred ceEEEEeeccceeeEEEeccCC
Q psy9368 145 RTVITFYMGQSTQTFSISTLSP 166 (179)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~ 166 (179)
.-||.|.||+-+-.||...|+-
T Consensus 28 ~~ii~~tmg~r~IsFs~~kl~~ 49 (192)
T 3lxr_F 28 DEIIRCTMGKRIVKISSTKINT 49 (192)
T ss_dssp EEEEEEEETTEEEEEEHHHHHH
T ss_pred CeeEEEeecCeEEEeeHHHHHH
Confidence 3589999999998888877653
No 7
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=4.50 E-value=2e+02 Score=17.10 Aligned_cols=9 Identities=67% Similarity=1.228 Sum_probs=6.7
Q ss_pred cCCchhhhh
Q psy9368 164 LSPRPILLS 172 (179)
Q Consensus 164 ~~~~~~~~~ 172 (179)
|.|||.||.
T Consensus 1 ldprpfllr 9 (27)
T 1nro_R 1 LDPRPFLLR 9 (27)
T ss_pred CCCcccccc
Confidence 568888874
No 8
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=4.04 E-value=5e+02 Score=18.70 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.5
Q ss_pred ceEEEEeeccceeeEEEeccC
Q psy9368 145 RTVITFYMGQSTQTFSISTLS 165 (179)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ 165 (179)
...++|--|+..+++.|..+.
T Consensus 58 ~g~l~F~~Get~k~i~V~I~d 78 (137)
T 3ead_A 58 KGLLSFPPGVDEQRFRIEVID 78 (137)
T ss_dssp EEEEEECTTCCEEEEEEEBCC
T ss_pred eEEEEECCCceEEEEEEEEec
Confidence 357999999999999987654
No 9
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} SCOP: b.1.27.0 PDB: 3fq4_A 3h6a_A
Probab=3.96 E-value=6.1e+02 Score=18.04 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=0.0
Q ss_pred ceEEEEeeccceeeEEEecc
Q psy9368 145 RTVITFYMGQSTQTFSISTL 164 (179)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~ 164 (179)
...++|--|+..++|.|..+
T Consensus 59 ~g~l~F~~Get~k~i~V~I~ 78 (123)
T 3fso_A 59 EGELLFQPGEAWKELQVKLL 78 (123)
T ss_dssp EEEEEECTTCCEEEEEEEBC
T ss_pred ceEEEECCCCeEEEEEEEEE
No 10
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=3.90 E-value=7e+02 Score=19.44 Aligned_cols=26 Identities=31% Similarity=0.623 Sum_probs=0.0
Q ss_pred cCCceEEEEeeccc-eeeEEEeccCCc
Q psy9368 142 KLPRTVITFYMGQS-TQTFSISTLSPR 167 (179)
Q Consensus 142 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 167 (179)
.||-||.+.-..+. .|-|-+...|||
T Consensus 49 dLPTtvMsvsLS~~~geP~l~a~vSpr 75 (129)
T 3i9v_7 49 DLPTTIMTASLSDGLGEPFLLADVSPR 75 (129)
T ss_dssp CCSCSEEEEEEECSSSCEEEEEEECCS
T ss_pred cCCceeEEEEeccCCCCeeEEEecCcc
Done!