RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9368
(179 letters)
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 41.9 bits (99), Expect = 8e-05
Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 12/156 (7%)
Query: 6 ALTSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQS-----IVAEPQSIV 60
+ + +V +V EP +VAEPQ ++A P +
Sbjct: 869 VVAEVPVAAAVEPVVSAPVVEAVAEVVEEPV-VVAEPQPEEVVVVETTHPEVIAAP--VT 925
Query: 61 AEPQSIVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQ 120
+PQ I +S V Q + + +V ++ T +VAEP+ +
Sbjct: 926 EQPQVI---TESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV-VVAEPEVVAQPAA 981
Query: 121 SIVAEPQSIVTEPQSIVVSQAKLPRTVITFYMGQST 156
+VAE + V ++ A T +T
Sbjct: 982 PVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHAT 1017
Score = 39.3 bits (92), Expect = 6e-04
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 5/141 (3%)
Query: 8 TSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEP--QSIVTEPQSIVAEPQSIVAEPQS 65
++ V E + V E +VAEPQ + VTE ++ E VA+
Sbjct: 884 SAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQE-- 941
Query: 66 IVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAE 125
V E V EPQ A+ + + +VAEP+ + +VAE + V ++ E
Sbjct: 942 -VAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPE 1000
Query: 126 PQSIVTEPQSIVVSQAKLPRT 146
++ + A P T
Sbjct: 1001 VAPAQVPEATVEHNHATAPMT 1021
Score = 39.3 bits (92), Expect = 7e-04
Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 12/150 (8%)
Query: 3 ESVALTSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAE 62
E V + +V E +V +V EP V
Sbjct: 862 EEVQVQPVVAEVPVAAAVE---PVVSAPVVEAVAEVVEEPV--VVAEPQPEEVVVVETTH 916
Query: 63 PQSI---VTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEP 119
P+ I VTE ++TE VA+ + EP V EPQ + + + +V EP
Sbjct: 917 PEVIAAPVTEQPQVITESDVAVAQEVAEHAEP---VVEPQDETADIEEAAETAEVVVAEP 973
Query: 120 QSIVAEPQSIVTEPQSIVVSQAKLPRTVIT 149
+ +VA+P + V + V +
Sbjct: 974 E-VVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
Score = 34.6 bits (80), Expect = 0.022
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 18 VTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEP 77
V PQ + E Q E + + +P + V S + +V
Sbjct: 847 VVRPQDVQVEEQR---EAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAE 903
Query: 78 QSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIV 137
T P+ I A VTE ++ E V + + AEP + + +
Sbjct: 904 PQPEEVVVVETTHPEVIAA----PVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADI 959
Query: 138 VSQAKLPRTVI 148
A+ V+
Sbjct: 960 EEAAETAEVVV 970
Score = 31.9 bits (73), Expect = 0.19
Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 6/111 (5%)
Query: 2 SESVALTSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVA 61
+ + + VTE ++TE VA+ + EP +V ++ +
Sbjct: 915 THPEVIAAPVTEQPQVITESDVAVAQEVAEHAEP--VVEPQDETADIEEAAETAEVVVAE 972
Query: 62 EPQSIVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEP 112
+ + + T + P
Sbjct: 973 PEVVAQPAAPVVAEVAAEVETVT----AVEPEVAPAQVPEATVEHNHATAP 1019
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 39.9 bits (92), Expect = 4e-04
Identities = 24/120 (20%), Positives = 24/120 (20%)
Query: 14 PQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSI 73
P P A P P A P P A P A P
Sbjct: 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 281
Query: 74 VTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEP 133
P A P P A P P A P P P P
Sbjct: 282 AAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPP 341
Score = 39.5 bits (91), Expect = 4e-04
Identities = 27/132 (20%), Positives = 30/132 (22%)
Query: 2 SESVALTSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVA 61
+++ A P P A P P A P P A P A
Sbjct: 217 AKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAA 276
Query: 62 EPQSIVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQS 121
P P A P P A P P A P T P
Sbjct: 277 PPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAK 336
Query: 122 IVAEPQSIVTEP 133
A P P
Sbjct: 337 AAAPPAKAAAAP 348
Score = 38.8 bits (89), Expect = 7e-04
Identities = 27/122 (22%), Positives = 27/122 (22%)
Query: 21 PQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQSI 80
P A P P A P P A P A P P
Sbjct: 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 281
Query: 81 VAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVVSQ 140
A P P A P P A P P A P T P
Sbjct: 282 AAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPP 341
Query: 141 AK 142
AK
Sbjct: 342 AK 343
Score = 38.8 bits (89), Expect = 7e-04
Identities = 25/117 (21%), Positives = 25/117 (21%)
Query: 26 AEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQSIVAEPQ 85
A P P A P P A P A P P A P
Sbjct: 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 279
Query: 86 SIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVVSQAK 142
P A P P A P P A P P AK
Sbjct: 280 KAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAK 336
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 34.3 bits (78), Expect = 0.033
Identities = 28/127 (22%), Positives = 40/127 (31%), Gaps = 2/127 (1%)
Query: 11 VTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTEL 70
V P QS A+P EP +PQ P + Q A +
Sbjct: 372 VIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQ 431
Query: 71 QSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIV 130
P+ VA + E Q PQS + + +P + Q Q V
Sbjct: 432 PYYAPAPEQPVAG-NAWQAEEQQSTFAPQS-TYQTEQTYQQPAAQEPLYQQPQPVEQQPV 489
Query: 131 TEPQSIV 137
EP+ +V
Sbjct: 490 VEPEPVV 496
Score = 28.9 bits (64), Expect = 1.9
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 28 PQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQSIVAEPQSI 87
PQ +PQ VA PQ +PQ VA Q + + Q +PQ VA PQ
Sbjct: 761 PQQQYQQPQQPVA-PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQY--QQPQQPVA-PQPQ 816
Query: 88 VTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEP 119
+PQ VA Q + +PQ + P
Sbjct: 817 YQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHP 848
Score = 28.1 bits (62), Expect = 2.8
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 42 PQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSI 101
PQ +PQ VA PQ +PQ V Q + +PQ +PQ VA PQ
Sbjct: 761 PQQQYQQPQQPVA-PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQY--QQPQQPVA-PQPQ 816
Query: 102 VTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEP 133
+PQ VA Q + +PQ + P
Sbjct: 817 YQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHP 848
Score = 26.6 bits (58), Expect = 9.3
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 14 PQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIV----TEPQSIVAEPQSIVAEPQSIVTE 69
PQ +PQ VA Q + +PQ PQ +PQ VA
Sbjct: 774 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP 833
Query: 70 LQSIVTEPQSIVAEP 84
Q + +PQ + P
Sbjct: 834 QQPVAPQPQDTLLHP 848
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 33.1 bits (76), Expect = 0.050
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 1/109 (0%)
Query: 40 AEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQ 99
+P +P+ V +P PQ Q Q +PQ Q + +
Sbjct: 92 YQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVA 151
Query: 100 SIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVVSQAKLPRTVI 148
+P +P +P VA PQ + V+ + K VI
Sbjct: 152 P-APQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVI 199
Score = 30.4 bits (69), Expect = 0.41
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 20 EPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQS 79
+P A+P+ V +P PQ P +P A LQ V+ +
Sbjct: 93 QPPYASAQPRQPVQQPPEAQVPPQH-APRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVA 151
Query: 80 IVAEPQSIVTEPQSIVAEPQSIVTEPQS-IVAEPQSIVTEPQ 120
+P +P +P V PQ VAEP ++ +P+
Sbjct: 152 PAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPK 193
Score = 30.4 bits (69), Expect = 0.49
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 26 AEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQSIVAEPQ 85
+P +P+ V +P PQ P +P Q V+
Sbjct: 92 YQPPYASAQPRQPVQQPPEAQVPPQH-APRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQV 150
Query: 86 SIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQ 134
+ +P +P +P VA PQ EP VAEP ++ +P+
Sbjct: 151 APAPQPVHSAPQPAQQAFQPAEPVAAPQP---EP---VAEPAPVMDKPK 193
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 32.1 bits (72), Expect = 0.15
Identities = 36/169 (21%), Positives = 51/169 (30%), Gaps = 14/169 (8%)
Query: 11 VTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTEL 70
T P S T P VT P P + T P IV + T
Sbjct: 485 DTSPTSRTTSATPNATSPTPAVTTPN--ATSPTTQKTSDTPNATSPTPIVIGVTTTATSP 542
Query: 71 QSIVTEPQSIVAEPQSIVTEPQ------SIVAEPQSIVTEPQSIVAEPQSIVTE-----P 119
+ T + + PQ P + + P + + + S T P
Sbjct: 543 PTGTTSVPNATS-PQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIP 601
Query: 120 QSIVAEPQSIVTEPQSIVVSQAKLPRTVITFYMGQSTQTFSISTLSPRP 168
S + P+S T ++ S IT T +STLSP P
Sbjct: 602 SSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGP 650
Score = 29.8 bits (66), Expect = 1.0
Identities = 29/154 (18%), Positives = 44/154 (28%), Gaps = 4/154 (2%)
Query: 19 TEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQ 78
P + T P S T P V P P + T T P
Sbjct: 472 GTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPN--ATSPTTQKTSDTPNATSPT 529
Query: 79 SIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVV 138
IV + T P + + T PQ P + T + + P + + +
Sbjct: 530 PIVIGVTTTATSPPTGTTSVPN-ATSPQVTEESPVN-NTNTPVVTSAPSVLTSAVTTGQH 587
Query: 139 SQAKLPRTVITFYMGQSTQTFSISTLSPRPILLS 172
P + S T ++ S P+L S
Sbjct: 588 GTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTS 621
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 31.6 bits (71), Expect = 0.25
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Query: 7 LTSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSI 66
LTSI P ++ Q + I P+ + + QS+ I P+++ E + +
Sbjct: 232 LTSI---PATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEELRYL 288
Query: 67 VTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEP 126
SI T P + + + + S+ A P+++ +++ A ++ + P S+ E
Sbjct: 289 SVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPEL 348
Query: 127 QSIVTEPQSIVVSQAKLPRTVITFYMGQSTQT 158
Q + I V LP T+ T + ++ T
Sbjct: 349 QVLDVSKNQITVLPETLPPTITTLDVSRNALT 380
Score = 27.7 bits (61), Expect = 3.9
Identities = 25/157 (15%), Positives = 64/157 (40%)
Query: 10 IVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTE 69
+ T P I + +++ + + + P+++ +++ + + P ++ Q +
Sbjct: 190 LTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELS 249
Query: 70 LQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSI 129
+ I P+ + + QS+ I P+++ E + + SI T P + + +
Sbjct: 250 INRITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHL 309
Query: 130 VTEPQSIVVSQAKLPRTVITFYMGQSTQTFSISTLSP 166
+ S+ LP + T G++ T ++L P
Sbjct: 310 NVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPP 346
Score = 27.4 bits (60), Expect = 5.1
Identities = 24/140 (17%), Positives = 58/140 (41%)
Query: 6 ALTSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQS 65
AL S+ I P+++ E + + SI P + + + + S+ A P++
Sbjct: 263 ALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPET 322
Query: 66 IVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAE 125
+ L+++ ++ + P S+ E Q + I P+++ ++ ++
Sbjct: 323 LPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNL 382
Query: 126 PQSIVTEPQSIVVSQAKLPR 145
P+++ Q + S+ L R
Sbjct: 383 PENLPAALQIMQASRNNLVR 402
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 31.3 bits (70), Expect = 0.31
Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 1/122 (0%)
Query: 2 SESVALTSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVA 61
E+VA T EPQ T + P+S V E + +P V +P S +
Sbjct: 282 EETVAETKAEEEPQPTQTVETKPTSAPESTVEENLPEINQPTQAV-QPTSETISTTPVEP 340
Query: 62 EPQSIVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQS 121
Q E+ I E + + ++ + E E + EP+
Sbjct: 341 TDQLKPKEVDQIQEELKKTKEIEVEELPTKKNDLVEINFDDLEELKFELVQTNQEKEPEK 400
Query: 122 IV 123
V
Sbjct: 401 AV 402
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/93 (11%), Positives = 16/93 (17%), Gaps = 3/93 (3%)
Query: 5 VALTSIVTEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQ 64
V L ++ S A P S Q+
Sbjct: 354 VTLLGLLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASP 413
Query: 65 SIVTELQSIVTEPQSIVAEPQSIVTEPQSIVAE 97
I S + P + E
Sbjct: 414 PIP---VPAEPTEPSPTPPANAANAPPSLNLEE 443
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 28.2 bits (63), Expect = 2.3
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 61 AEPQSIVTELQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQ 120
E I + QS +PQ EPQ V EP+ + + +AE Q E +
Sbjct: 107 QEEAPIPVQAQS---QPQPEKVEPQ--VEEPRDEEVLEEPEPVAAKVPMAEVQP-EEETE 160
Query: 121 SIVAEPQSIVTEPQSIVV 138
V EP+ EP+ V+
Sbjct: 161 IEVDEPEEPKPEPELDVI 178
Score = 27.5 bits (61), Expect = 4.2
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 13 EPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQS 72
EPQ V EP+ + + +AE Q E + V EP+ EP EL
Sbjct: 126 EPQ--VEEPRDEEVLEEPEPVAAKVPMAEVQP-EEETEIEVDEPEEPKPEP-----ELDV 177
Query: 73 IV 74
IV
Sbjct: 178 IV 179
>gnl|CDD|193416 pfam12943, DUF3839, Protein of unknown function (DUF3839). This
is a family of uncharacterized proteins that are found
in Trichomonas.
Length = 242
Score = 27.3 bits (60), Expect = 3.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 42 PQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTE 76
P S+V P S++ E + + + TE+Q I E
Sbjct: 4 PNSLVMNPTSMLVEMKKFIPSSFTFETEIQKIKQE 38
>gnl|CDD|235848 PRK06664, fliD, flagellar hook-associated protein FliD; Validated.
Length = 661
Score = 27.4 bits (61), Expect = 4.7
Identities = 15/94 (15%), Positives = 24/94 (25%)
Query: 26 AEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVAEPQSIVTELQSIVTEPQSIVAEPQ 85
P + + + IV EP S + E++ + E
Sbjct: 208 NFPPNEQPIVYGQSSSTNKLFFTENGIVLEPLSEQSIDIPETIEIKKRSKIEFEVSYEDA 267
Query: 86 SIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEP 119
S IV P E + E + E
Sbjct: 268 SEEEIENKIVFNPGEATFEGAKVENEDSQVDLES 301
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 27.0 bits (60), Expect = 6.0
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 3/84 (3%)
Query: 70 LQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSIVTEPQSIVAEPQSI 129
Q S A P A Q + + A V+
Sbjct: 384 TQPAAAPQPSAAAAASPS---PSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPP 440
Query: 130 VTEPQSIVVSQAKLPRTVITFYMG 153
T PQ++ +Q K + + +
Sbjct: 441 STAPQAVRPAQFKEEKKIPVSKVS 464
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.122 0.310
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,981,456
Number of extensions: 691425
Number of successful extensions: 807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 91
Length of query: 179
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 88
Effective length of database: 6,901,388
Effective search space: 607322144
Effective search space used: 607322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (25.4 bits)