Query psy9370
Match_columns 101
No_of_seqs 104 out of 272
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1233|consensus 99.9 3.7E-22 8.1E-27 160.7 5.9 98 1-98 421-518 (613)
2 PF02913 FAD-oxidase_C: FAD li 98.6 1.5E-08 3.2E-13 73.1 2.0 87 1-87 62-155 (248)
3 TIGR00387 glcD glycolate oxida 98.1 7.3E-06 1.6E-10 65.6 5.9 82 1-86 234-320 (413)
4 PRK11230 glycolate oxidase sub 97.7 9.2E-05 2E-09 61.1 6.4 80 1-84 291-375 (499)
5 PLN02805 D-lactate dehydrogena 97.4 0.0006 1.3E-08 57.2 7.1 81 1-84 366-452 (555)
6 COG3286 Uncharacterized protei 92.8 0.49 1.1E-05 35.5 6.3 83 4-86 42-135 (204)
7 PF09840 DUF2067: Uncharacteri 77.3 15 0.00032 27.1 6.9 83 4-86 39-132 (190)
8 COG1071 AcoA Pyruvate/2-oxoglu 55.0 34 0.00075 27.7 5.3 74 6-88 229-324 (358)
9 PF02662 FlpD: Methyl-viologen 48.4 29 0.00064 23.5 3.5 49 35-85 70-122 (124)
10 KOG4179|consensus 48.0 7.4 0.00016 32.8 0.5 29 50-79 509-539 (568)
11 cd00248 Mth938-like Mth938-lik 45.4 9.8 0.00021 25.3 0.7 28 39-66 61-88 (109)
12 cd07947 DRE_TIM_Re_CS Clostrid 45.0 47 0.001 25.6 4.5 72 9-81 110-197 (279)
13 PLN02269 Pyruvate dehydrogenas 43.4 1.1E+02 0.0023 24.6 6.5 75 6-89 228-324 (362)
14 KOG2872|consensus 38.0 63 0.0014 26.1 4.3 28 18-51 208-235 (359)
15 cd05560 Xcc1710_like Xcc1710_l 37.5 14 0.0003 24.6 0.5 28 39-66 61-88 (109)
16 PF14257 DUF4349: Domain of un 37.4 40 0.00087 25.3 3.0 76 10-85 59-143 (262)
17 COG3010 NanE Putative N-acetyl 37.1 56 0.0012 25.0 3.7 71 3-84 156-227 (229)
18 PF01218 Coprogen_oxidas: Copr 33.0 45 0.00098 26.5 2.7 77 8-87 133-209 (296)
19 PF00676 E1_dh: Dehydrogenase 31.8 2.3E+02 0.005 21.9 6.5 76 5-88 192-289 (300)
20 PLN02873 coproporphyrinogen-II 31.7 88 0.0019 24.6 4.1 77 8-87 111-187 (274)
21 TIGR03182 PDH_E1_alph_y pyruva 31.0 1.8E+02 0.0039 22.6 5.8 74 6-88 202-296 (315)
22 TIGR01615 A_thal_3542 uncharac 30.6 64 0.0014 22.7 2.9 29 70-98 86-114 (131)
23 COG5405 HslV ATP-dependent pro 29.8 60 0.0013 23.9 2.8 55 2-61 47-103 (178)
24 PRK10984 DNA-binding transcrip 28.7 46 0.00099 23.3 1.9 34 35-68 7-43 (127)
25 PRK05330 coproporphyrinogen II 27.8 93 0.002 24.8 3.7 77 8-87 138-214 (300)
26 cd00886 MogA_MoaB MogA_MoaB fa 27.2 1.2E+02 0.0027 20.7 4.0 38 45-84 21-58 (152)
27 cd07045 BMC_CcmK_like Carbon d 27.1 1.1E+02 0.0023 19.4 3.4 28 2-29 40-67 (84)
28 PF00994 MoCF_biosynth: Probab 25.9 1.1E+02 0.0024 20.5 3.5 38 46-85 19-56 (144)
29 KOG0496|consensus 25.7 91 0.002 27.4 3.6 62 11-72 143-209 (649)
30 TIGR00177 molyb_syn molybdenum 24.5 1.6E+02 0.0034 20.0 4.1 38 45-84 28-65 (144)
31 PF07417 Crl: Transcriptional 23.0 50 0.0011 23.1 1.2 29 40-68 10-41 (125)
32 PF03235 DUF262: Protein of un 22.8 31 0.00067 24.1 0.2 25 44-81 12-37 (221)
33 PF04304 DUF454: Protein of un 22.0 58 0.0013 19.5 1.3 17 41-57 7-23 (71)
34 cd05125 Mth938_2P1-like Mth938 21.8 46 0.00099 22.5 0.9 34 29-67 58-91 (114)
35 CHL00149 odpA pyruvate dehydro 21.2 2.8E+02 0.0061 21.9 5.4 67 12-87 234-320 (341)
36 COG3737 Uncharacterized conser 20.9 45 0.00098 23.3 0.7 30 39-68 78-107 (127)
37 PF13250 DUF4041: Domain of un 20.8 1.1E+02 0.0023 18.2 2.3 25 61-85 12-36 (56)
38 PRK09487 sdhC succinate dehydr 20.7 49 0.0011 22.8 0.8 28 48-75 88-115 (129)
No 1
>KOG1233|consensus
Probab=99.86 E-value=3.7e-22 Score=160.75 Aligned_cols=98 Identities=46% Similarity=0.860 Sum_probs=95.5
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHH
Q psy9370 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~ 80 (101)
+++.|||+.+.|+++++++.+|+.+++|+..|..+|+..|..+|.+.|+||+-+.+|++.|+|||++|||++..||++|+
T Consensus 421 ATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVK 500 (613)
T KOG1233|consen 421 ATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVK 500 (613)
T ss_pred hhheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccc
Q psy9370 81 KRLTRECTGRWLPVLESQ 98 (101)
Q Consensus 81 ~al~~a~~~~g~~~~~~~ 98 (101)
+++.++|+++|+..+++.
T Consensus 501 er~~rEck~~gv~~~~~s 518 (613)
T KOG1233|consen 501 ERMKRECKAQGVTHPVLS 518 (613)
T ss_pred HHHHHHHHhcCCCccccc
Confidence 999999999999999875
No 2
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=98.62 E-value=1.5e-08 Score=73.07 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=69.3
Q ss_pred CEEEEeCChH-HHHhHHH-HHHHHHHHcCCCc----CC-CcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchH
Q psy9370 1 MALLVLGDPE-DVKNNED-KIYSIAKRYGGIP----AG-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTV 73 (101)
Q Consensus 1 ~~~gfEG~~~-~V~~~~~-~~~~i~~~~GG~~----~G-~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~ 73 (101)
+++.|+|+++ .++.+.+ .+.++++++|+.. .+ +...+.|...++..||+++.....|...+|+|+++||++++
T Consensus 62 llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~ 141 (248)
T PF02913_consen 62 LLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLP 141 (248)
T ss_dssp EEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhh
Confidence 4788999994 4666666 7888888888764 11 23356788777777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy9370 74 LLCINVKKRLTREC 87 (101)
Q Consensus 74 ~l~~~v~~al~~a~ 87 (101)
.+++.+++.+.+..
T Consensus 142 ~~~~~~~~~~~~~~ 155 (248)
T PF02913_consen 142 EFLREIRALLREYG 155 (248)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred hHHHhhhhhhhhcc
Confidence 99999988776653
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=98.08 E-value=7.3e-06 Score=65.64 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=62.6
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCCcC----C-CcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHH
Q psy9370 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL 75 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~----G-~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l 75 (101)
+++.|+|+.+.++.+.+++.++++++|+... + +...+.|...++..|++++.. ...+ +.|+|+||++++++
T Consensus 234 l~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~ 309 (413)
T TIGR00387 234 LLVEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEA 309 (413)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHH
Confidence 3578999998999999999999999988532 2 234567887777788988742 2222 46799999999999
Q ss_pred HHHHHHHHHHH
Q psy9370 76 CINVKKRLTRE 86 (101)
Q Consensus 76 ~~~v~~al~~a 86 (101)
++.+++.+.+.
T Consensus 310 ~~~~~~~~~~~ 320 (413)
T TIGR00387 310 LRGIADIARKY 320 (413)
T ss_pred HHHHHHHHHHc
Confidence 99997776543
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=97.71 E-value=9.2e-05 Score=61.10 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=58.3
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCCcCC-----CcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHH
Q psy9370 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL 75 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G-----~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l 75 (101)
+++.|+|+++.++.+.+++.++|+++|+..+. +...+.|..-+...|+++.. ..+++. .++++||++++.+
T Consensus 291 ll~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~ 366 (499)
T PRK11230 291 LLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGV 366 (499)
T ss_pred EEEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHH
Confidence 36788999999999999999999999975332 12234666533445787762 334443 4999999999999
Q ss_pred HHHHHHHHH
Q psy9370 76 CINVKKRLT 84 (101)
Q Consensus 76 ~~~v~~al~ 84 (101)
++.+++...
T Consensus 367 ~~~~~~~~~ 375 (499)
T PRK11230 367 LEGIARLSQ 375 (499)
T ss_pred HHHHHHHHH
Confidence 999977443
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=97.39 E-value=0.0006 Score=57.25 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=56.4
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCCc--CCCc---chhhhhhhhhhhH-HhhhhhhhcccceeeeeccccccchHH
Q psy9370 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIP--AGES---NGRRGYMLTYIIA-YIRDFACDYYFIGDSFETSVPWDKTVL 74 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~--~G~~---~g~~W~~~rf~~p-YlRd~l~~~G~~~DT~ETA~~Ws~v~~ 74 (101)
+++.|+|+++.++.+.+.+.+||+++|+.. +... ..+.|. .|-... .+.. ...+....+.++|+||+++++
T Consensus 366 Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~-~R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e 442 (555)
T PLN02805 366 LMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWK-IRKEALWACFA--MEPKYEAMITDVCVPLSHLAE 442 (555)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-HHHHHHHHHhh--cCCCCceeEEEEEEEHHHHHH
Confidence 467889999999999999999999999852 2222 234565 344332 2211 123444567899999999999
Q ss_pred HHHHHHHHHH
Q psy9370 75 LCINVKKRLT 84 (101)
Q Consensus 75 l~~~v~~al~ 84 (101)
+++.+++.+.
T Consensus 443 ~i~~~~~~~~ 452 (555)
T PLN02805 443 LISRSKKELD 452 (555)
T ss_pred HHHHHHHHHH
Confidence 9999977654
No 6
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.79 E-value=0.49 Score=35.49 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=59.0
Q ss_pred EEeCChHHHHhHHHHHHHHHHHcCCCcCCCcch-----hhhhhhhhhhH--Hhhhhhhhccccee----eeeccccccch
Q psy9370 4 LVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYMLTYIIA--YIRDFACDYYFIGD----SFETSVPWDKT 72 (101)
Q Consensus 4 gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g-----~~W~~~rf~~p--YlRd~l~~~G~~~D----T~ETA~~Ws~v 72 (101)
=..|..+.++...+.+.++.+..-+..-+...| .--...+=+.| -|.|.|--+|+=++ -++|++||+.+
T Consensus 42 ~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~ev 121 (204)
T COG3286 42 NVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSEV 121 (204)
T ss_pred EEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHHH
Confidence 356888899999999988888777654333222 11222222232 89999999998764 58999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy9370 73 VLLCINVKKRLTRE 86 (101)
Q Consensus 73 ~~l~~~v~~al~~a 86 (101)
..+.+++-+..+.+
T Consensus 122 ~E~vreLse~~~E~ 135 (204)
T COG3286 122 VELVRELSEVYREA 135 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998887766655
No 7
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=77.34 E-value=15 Score=27.12 Aligned_cols=83 Identities=12% Similarity=0.034 Sum_probs=57.9
Q ss_pred EEeCChHHHHhHHHHHHHHHHHcCCCcCCCcch-----hhhhh--hhhhhHHhhhhhhhcccce----eeeeccccccch
Q psy9370 4 LVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYM--LTYIIAYIRDFACDYYFIG----DSFETSVPWDKT 72 (101)
Q Consensus 4 gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g-----~~W~~--~rf~~pYlRd~l~~~G~~~----DT~ETA~~Ws~v 72 (101)
=..|.+..++...+.+.++.+...+.+-+.+.. .--++ ..|..|-|-|.|--.|+=+ |.+.|+++|+.+
T Consensus 39 ~i~G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i~r~a~~~vp~d~L~~~L~~~G~~ae~~~~~i~T~a~~eev 118 (190)
T PF09840_consen 39 EIQGYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDIFREAGYPVPPDLLVDALKLLGYKAEYREDVIKTDAPLEEV 118 (190)
T ss_pred EEecChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHHHHHcCCCCCHHHHHHHHHhCCCeeEEeCCeEEecCCHHHH
Confidence 346888888888888888877666533222111 11111 3455568999999888765 589999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy9370 73 VLLCINVKKRLTRE 86 (101)
Q Consensus 73 ~~l~~~v~~al~~a 86 (101)
..+-+++-++....
T Consensus 119 ~~l~~~Lse~~~e~ 132 (190)
T PF09840_consen 119 VELAERLSEIYKEL 132 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999997776643
No 8
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=55.04 E-value=34 Score=27.74 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=50.4
Q ss_pred eCCh-HHHHhHHHHHHHHHHHcCCCcC-------------C--------CcchhhhhhhhhhhHHhhhhhhhcccceeee
Q psy9370 6 LGDP-EDVKNNEDKIYSIAKRYGGIPA-------------G--------ESNGRRGYMLTYIIAYIRDFACDYYFIGDSF 63 (101)
Q Consensus 6 EG~~-~~V~~~~~~~~~i~~~~GG~~~-------------G--------~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ 63 (101)
.|.+ -.|-...+.+.+.+++.+|=.| + .+-.+.|.+ |=-++-+|++|.+.|++.|
T Consensus 229 DG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~se-- 305 (358)
T COG1071 229 DGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSE-- 305 (358)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCCH--
Confidence 3443 4477778899999998888221 1 112356665 2223489999999999887
Q ss_pred eccccccchHHHHHHHHHHHHHHHh
Q psy9370 64 ETSVPWDKTVLLCINVKKRLTRECT 88 (101)
Q Consensus 64 ETA~~Ws~v~~l~~~v~~al~~a~~ 88 (101)
..+.++.+++++.+.++.+
T Consensus 306 ------e~~~~i~~e~~~~V~ea~e 324 (358)
T COG1071 306 ------EELEAIEAEAKAEVDEAVE 324 (358)
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 5677888888888877543
No 9
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=48.41 E-value=29 Score=23.55 Aligned_cols=49 Identities=4% Similarity=0.002 Sum_probs=40.0
Q ss_pred chhhhhhhhhhhHHhhhhhhhcccceeeeec----cccccchHHHHHHHHHHHHH
Q psy9370 35 NGRRGYMLTYIIAYIRDFACDYYFIGDSFET----SVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 35 ~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ET----A~~Ws~v~~l~~~v~~al~~ 85 (101)
.|..|.+.|+ ..+++.|.+.|+=-|-+++ +..+.++.+..+.+.+.|++
T Consensus 70 ~Gn~~a~~Rv--~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 70 EGNYRAEKRV--ERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred hhhHHHHHHH--HHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 3457777766 7899999999999999998 88888888888888777654
No 10
>KOG4179|consensus
Probab=48.04 E-value=7.4 Score=32.78 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=20.3
Q ss_pred hhhhhhcccceeeeeccccccc--hHHHHHHH
Q psy9370 50 RDFACDYYFIGDSFETSVPWDK--TVLLCINV 79 (101)
Q Consensus 50 Rd~l~~~G~~~DT~ETA~~Ws~--v~~l~~~v 79 (101)
-.+--+.|++.|| ||+..||+ ....+...
T Consensus 509 thytg~~gylsdt-ets~~w~~e~~~~~~~r~ 539 (568)
T KOG4179|consen 509 THYTGDSGYLSDT-ETSQQWDNETSETDWDRL 539 (568)
T ss_pred eeecCCCccccCc-ccccccccccchhhhhhh
Confidence 3445678999998 99999985 34444433
No 11
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=45.44 E-value=9.8 Score=25.26 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=23.8
Q ss_pred hhhhhhhhHHhhhhhhhcccceeeeecc
Q psy9370 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DT~ETA 66 (101)
....+|-.|-+++.|.++|+-+|.+.|.
T Consensus 61 G~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 61 GAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3444677789999999999999999997
No 12
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=45.04 E-value=47 Score=25.62 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=39.8
Q ss_pred hHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhh--hhhhHHhhhhhh---hccc-----ceeeeecccccc------ch
Q psy9370 9 PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYML--TYIIAYIRDFAC---DYYF-----IGDSFETSVPWD------KT 72 (101)
Q Consensus 9 ~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~--rf~~pYlRd~l~---~~G~-----~~DT~ETA~~Ws------~v 72 (101)
.+++-...+.+.+.++++|-. +--.+...++.. -+-.+|+.+++- +.|. ++||...++|++ ++
T Consensus 110 ~~e~l~~~~~~v~~a~~~g~~-v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v 188 (279)
T cd07947 110 REEAMEKYLEIVEEALDHGIK-PRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSV 188 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCCe-EEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHH
Confidence 344555566677788888642 211222233331 122356666433 2554 469999999995 45
Q ss_pred HHHHHHHHH
Q psy9370 73 VLLCINVKK 81 (101)
Q Consensus 73 ~~l~~~v~~ 81 (101)
..+.+.+++
T Consensus 189 ~~l~~~l~~ 197 (279)
T cd07947 189 PKIIYGLRK 197 (279)
T ss_pred HHHHHHHHH
Confidence 555555543
No 13
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=43.38 E-value=1.1e+02 Score=24.65 Aligned_cols=75 Identities=11% Similarity=-0.047 Sum_probs=46.4
Q ss_pred eCCh-HHHHhHHHHHHHHHHHcCCCcC-------------CC--------cchhhhhhhhhhhHHhhhhhhhcccceeee
Q psy9370 6 LGDP-EDVKNNEDKIYSIAKRYGGIPA-------------GE--------SNGRRGYMLTYIIAYIRDFACDYYFIGDSF 63 (101)
Q Consensus 6 EG~~-~~V~~~~~~~~~i~~~~GG~~~-------------G~--------~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ 63 (101)
.|.+ ..|....+.+.+.+++ +|-.+ +. ...+.|...+=-+..+++.|.+.|++.+
T Consensus 228 DG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te-- 304 (362)
T PLN02269 228 DGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATE-- 304 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCH--
Confidence 3444 4456666667777777 66211 11 1235666544444578999999999877
Q ss_pred eccccccchHHHHHHHHHHHHHHHhh
Q psy9370 64 ETSVPWDKTVLLCINVKKRLTRECTG 89 (101)
Q Consensus 64 ETA~~Ws~v~~l~~~v~~al~~a~~~ 89 (101)
+.+.++-+.+++.+.++++.
T Consensus 305 ------~e~~~i~~e~~~~v~~a~~~ 324 (362)
T PLN02269 305 ------AELKDIEKEIRKEVDDAVAK 324 (362)
T ss_pred ------HHHHHHHHHHHHHHHHHHHH
Confidence 55666677777766666543
No 14
>KOG2872|consensus
Probab=37.97 E-value=63 Score=26.13 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhh
Q psy9370 18 KIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRD 51 (101)
Q Consensus 18 ~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd 51 (101)
++.+|...++|-. ++. .| .+|..||||+
T Consensus 208 q~lQiFeSwageL-spe---~f--~e~s~PYl~~ 235 (359)
T KOG2872|consen 208 QALQIFESWAGEL-SPE---DF--EEFSLPYLRQ 235 (359)
T ss_pred HHHHHHHHhcccC-CHH---HH--HHhhhHHHHH
Confidence 4445555555542 221 23 3788899997
No 15
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=37.51 E-value=14 Score=24.61 Aligned_cols=28 Identities=7% Similarity=-0.140 Sum_probs=24.0
Q ss_pred hhhhhhhhHHhhhhhhhcccceeeeecc
Q psy9370 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DT~ETA 66 (101)
....+|--|-+++.|.++|+-+|.+.|+
T Consensus 61 G~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 61 GERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 4456677789999999999999999997
No 16
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.40 E-value=40 Score=25.26 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=49.4
Q ss_pred HHHHhHHHHHHHHHHHcCCCcCCCc-------chhhhhhhhhhhH--HhhhhhhhcccceeeeeccccccchHHHHHHHH
Q psy9370 10 EDVKNNEDKIYSIAKRYGGIPAGES-------NGRRGYMLTYIIA--YIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (101)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~~G~~-------~g~~W~~~rf~~p--YlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~ 80 (101)
+.++...+.+.++|.++||...-.. .+.......+++| .+.+++.+.+=+.....-.+.=.++..-|..+.
T Consensus 59 ~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~ 138 (262)
T PF14257_consen 59 KDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLE 138 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHH
Confidence 3477788999999999999654322 2234444466666 666666655555555555555577888887777
Q ss_pred HHHHH
Q psy9370 81 KRLTR 85 (101)
Q Consensus 81 ~al~~ 85 (101)
.+++.
T Consensus 139 arl~~ 143 (262)
T PF14257_consen 139 ARLKN 143 (262)
T ss_pred HHHHH
Confidence 66644
No 17
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=37.06 E-value=56 Score=25.03 Aligned_cols=71 Identities=7% Similarity=-0.066 Sum_probs=50.8
Q ss_pred EEEeC-ChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHHH
Q psy9370 3 LLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (101)
Q Consensus 3 ~gfEG-~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~ 81 (101)
-||++ +..+.+.-..-+.++++ .|-..+.+ +||+.|-+-....++|..+=|.=+|.| +...+.....+
T Consensus 156 sGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAE--------Gr~~tP~~Ak~a~~~Ga~aVvVGsAIT--Rp~~It~~F~~ 224 (229)
T COG3010 156 SGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAE--------GRYNTPEQAKKAIEIGADAVVVGSAIT--RPEEITQWFVD 224 (229)
T ss_pred ccccCCCCCCCCCcHHHHHHHHh-CCCeEEee--------CCCCCHHHHHHHHHhCCeEEEECcccC--CHHHHHHHHHH
Confidence 46777 55556666666677665 66665554 599999888889999999999999987 55555555554
Q ss_pred HHH
Q psy9370 82 RLT 84 (101)
Q Consensus 82 al~ 84 (101)
++.
T Consensus 225 ~ik 227 (229)
T COG3010 225 AIK 227 (229)
T ss_pred HHh
Confidence 443
No 18
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i.e. coproporphyrin III oxidase or coproporphyrinogenase) catalyses the oxidative decarboxylation of coproporphyrinogen III to proto-porhyrinogen IX in the haem and chlorophyll biosynthetic pathways [, ]. The protein is a homodimer containing two internally bound iron atoms per molecule of native protein []. The enzyme is active in the presence of molecular oxygen that acts as an electron acceptor. The enzyme is widely distributed having been found in a variety of eukaryotic and prokaryotic sources.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 3EJO_B 3DWR_B 1VJU_B 2QT8_B 3DWS_A 2AEX_A 1TKL_B 1TK1_A 1TLB_Q 1TXN_A ....
Probab=32.97 E-value=45 Score=26.48 Aligned_cols=77 Identities=10% Similarity=-0.028 Sum_probs=55.4
Q ss_pred ChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHHH
Q psy9370 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~~a~ 87 (101)
.++++..--+...++|.+|+...= .-.++|-+.-|.+|...+.-===|++.|.|.+ -+|++.-++.++|-+++..+.
T Consensus 133 ~~eD~~~FH~~~K~~cd~~~~~~Y--p~fK~wcD~YFyipHR~E~RGiGGIFfD~l~~-~~~e~~f~f~~~vg~~fl~aY 209 (296)
T PF01218_consen 133 FEEDAKHFHQTLKEACDPHDPSYY--PRFKKWCDEYFYIPHRNEHRGIGGIFFDDLNT-GDFEKDFAFVKDVGEAFLPAY 209 (296)
T ss_dssp -HHHHHHHHHHHHHHHGGG-TTHH--HHHHHHHHHHSEEGGGTEESSSEEEEEEEE-S-S-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcChHHH--HHHHhhchhhcchhhcCCCcCCceeeeccccc-cchhhHHHHHHHHHHHHHHHH
Confidence 356788888999999999975321 24789999999889866655556788999987 567777777777777666653
No 19
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=31.79 E-value=2.3e+02 Score=21.88 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=45.4
Q ss_pred EeCCh-HHHHhHHHHHHHHHHHcCCCcC-------------CC--------cchhhhhhhhhhhHHhhhhhhhcccceee
Q psy9370 5 VLGDP-EDVKNNEDKIYSIAKRYGGIPA-------------GE--------SNGRRGYMLTYIIAYIRDFACDYYFIGDS 62 (101)
Q Consensus 5 fEG~~-~~V~~~~~~~~~i~~~~GG~~~-------------G~--------~~g~~W~~~rf~~pYlRd~l~~~G~~~DT 62 (101)
..|.+ ..|-...+.+.+.+++.+|-.+ +. ..-+.|.+.+=-.+.+++.|.+.|++.+
T Consensus 192 VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~- 270 (300)
T PF00676_consen 192 VDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTE- 270 (300)
T ss_dssp EETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-H-
T ss_pred ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCH-
Confidence 34554 5577778888899998888211 11 1123455544334588999999999876
Q ss_pred eeccccccchHHHHHHHHHHHHHHHh
Q psy9370 63 FETSVPWDKTVLLCINVKKRLTRECT 88 (101)
Q Consensus 63 ~ETA~~Ws~v~~l~~~v~~al~~a~~ 88 (101)
+.+.++.+++++.|.++.+
T Consensus 271 -------~~~~~i~~e~~~~v~~a~~ 289 (300)
T PF00676_consen 271 -------EELDAIEAEIKAEVEEAVE 289 (300)
T ss_dssp -------HHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 3555666666666655543
No 20
>PLN02873 coproporphyrinogen-III oxidase
Probab=31.67 E-value=88 Score=24.61 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=57.4
Q ss_pred ChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHHH
Q psy9370 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~~a~ 87 (101)
.++++...-+.+.++|.+||-..= .-.++|-+.-|.+|...+.-==-|++.|.+.+ -+|.+.-.+.++|-.++..+.
T Consensus 111 ~~eD~~~FH~~~K~aCd~~~~~~Y--~~fK~wCD~YFyi~HR~E~RGvGGiFfDdln~-~~~e~~f~f~~~vg~afl~aY 187 (274)
T PLN02873 111 FEEDVKHFHGTYKDVCDKHDPEFY--PRFKKWCDDYFYIKHRGERRGLGGIFFDDLND-RDQEDLLAFATDVANSVVPAY 187 (274)
T ss_pred ChHHHHHHHHHHHHHHhccCchhh--HHHHHHHHHhcchhhcCCCCCCceeecCCCCC-CCHHHHHHHHHHHHHHHHHHh
Confidence 356678888999999999986532 23789999999888866655566788898876 457777777777777766663
No 21
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=30.96 E-value=1.8e+02 Score=22.62 Aligned_cols=74 Identities=8% Similarity=-0.036 Sum_probs=44.6
Q ss_pred eCCh-HHHHhHHHHHHHHHHHcCCCcC--------------------CCcchhhhhhhhhhhHHhhhhhhhcccceeeee
Q psy9370 6 LGDP-EDVKNNEDKIYSIAKRYGGIPA--------------------GESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 64 (101)
Q Consensus 6 EG~~-~~V~~~~~~~~~i~~~~GG~~~--------------------G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~E 64 (101)
+|.+ ..|....+.+.+.+++.+|-.+ ....-+.|.+ |=-.+.+|+.|.+.|++.+.
T Consensus 202 dg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~Yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~-- 278 (315)
T TIGR03182 202 DGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWRK-RDPIEKLKARLIEQGIASEE-- 278 (315)
T ss_pred CCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccccCCHHHHHHHHh-cCHHHHHHHHHHHCCCCCHH--
Confidence 4443 3466666777777777666211 1123356664 32235788999999998764
Q ss_pred ccccccchHHHHHHHHHHHHHHHh
Q psy9370 65 TSVPWDKTVLLCINVKKRLTRECT 88 (101)
Q Consensus 65 TA~~Ws~v~~l~~~v~~al~~a~~ 88 (101)
.+.++.+.+++.+.++++
T Consensus 279 ------~~~~~~~~~~~~v~~a~~ 296 (315)
T TIGR03182 279 ------ELKEIDKEVRAEVEEAVE 296 (315)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 455666666666666544
No 22
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=30.61 E-value=64 Score=22.66 Aligned_cols=29 Identities=7% Similarity=0.041 Sum_probs=24.6
Q ss_pred cchHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy9370 70 DKTVLLCINVKKRLTRECTGRWLPVLESQ 98 (101)
Q Consensus 70 s~v~~l~~~v~~al~~a~~~~g~~~~~~~ 98 (101)
+++.++.+-+-+++++.+++.|.+.||-.
T Consensus 86 ~rL~~iV~~mc~Aak~Slk~~gmhlPPWR 114 (131)
T TIGR01615 86 ERLRQLVRLMCDAAKKSLKKKGMPLPPWR 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 57778888888899999999999988843
No 23
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.80 E-value=60 Score=23.94 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=39.5
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCCcCCC--cchhhhhhhhhhhHHhhhhhhhccccee
Q psy9370 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGE--SNGRRGYMLTYIIAYIRDFACDYYFIGD 61 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~--~~g~~W~~~rf~~pYlRd~l~~~G~~~D 61 (101)
+.||-|+..+.-.-.+...+-|+.|.|-..-. +..+.|+.- -|||. |-.+=+++|
T Consensus 47 laGFAGstADaftLfe~fe~kle~~~g~L~raavelaKdwr~D----k~lr~-LEAmllVad 103 (178)
T COG5405 47 LAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVELAKDWRTD----KYLRK-LEAMLLVAD 103 (178)
T ss_pred EEEecccchhHHHHHHHHHHHHHHccCcHHHHHHHHHHhhhhh----hHHHH-HhhheeEeC
Confidence 67999999888888899999999998743322 456889965 45886 544444443
No 24
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=28.74 E-value=46 Score=23.35 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=23.0
Q ss_pred chhhhhhhhhhh--HHhhhhhh-hcccceeeeecccc
Q psy9370 35 NGRRGYMLTYII--AYIRDFAC-DYYFIGDSFETSVP 68 (101)
Q Consensus 35 ~g~~W~~~rf~~--pYlRd~l~-~~G~~~DT~ETA~~ 68 (101)
+.+.=.-.+|.. ||||+..- +--|+.|-|..+|+
T Consensus 7 ~~~~RLlk~f~alGPYlRE~qc~e~~ffFDCLaVCVn 43 (127)
T PRK10984 7 HPKSRLIKKFTALGPYLREGQCEENRFFFDCLAVCVN 43 (127)
T ss_pred CCchHHHHHHHHhCchhchhcccCCCEEeeeeeEecc
Confidence 333444556665 99999854 44577888888876
No 25
>PRK05330 coproporphyrinogen III oxidase; Provisional
Probab=27.79 E-value=93 Score=24.76 Aligned_cols=77 Identities=6% Similarity=-0.050 Sum_probs=56.5
Q ss_pred ChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHHH
Q psy9370 8 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 87 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~~a~ 87 (101)
.++++..--+...++|.+||...= .-.++|-+.-|.+|...+.-===|++.|.+.+ -.|++.-++.++|-.++..+.
T Consensus 138 ~~eD~~~FH~~~K~~Cd~~~~~~Y--~~fK~wCD~YFyi~HR~E~RGvGGiFfD~l~~-~~~e~~f~F~~~vg~~fl~aY 214 (300)
T PRK05330 138 FEEDAVHFHRTAKDACDPFGPEYY--PRFKKWCDEYFYLKHRNEPRGVGGIFFDDLNS-PGFERDFAFTQAVGDAFLDAY 214 (300)
T ss_pred ChHHHHHHHHHHHHHHhccChhhh--HHHHHHHHHhcChhhcCCCCCCCeeecCCCCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 356677788899999999997642 24789999999888866655556788899977 356666667777766666553
No 26
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=27.24 E-value=1.2e+02 Score=20.72 Aligned_cols=38 Identities=3% Similarity=-0.162 Sum_probs=27.6
Q ss_pred hhHHhhhhhhhcccceeeeeccccccchHHHHHHHHHHHH
Q psy9370 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (101)
Q Consensus 45 ~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~ 84 (101)
+.|+|...|.++|+ +..+..+--|+...+.+.+++++.
T Consensus 21 n~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~ 58 (152)
T cd00886 21 SGPALVELLEEAGH--EVVAYEIVPDDKDEIREALIEWAD 58 (152)
T ss_pred hHHHHHHHHHHcCC--eeeeEEEcCCCHHHHHHHHHHHHh
Confidence 35788888888884 666677677888777777766544
No 27
>cd07045 BMC_CcmK_like Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carbox
Probab=27.09 E-value=1.1e+02 Score=19.44 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.1
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCC
Q psy9370 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGI 29 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~ 29 (101)
++.+.|+-..|+...+.+.+.++.+|..
T Consensus 40 ~vii~GdvsaV~~Av~a~~~~~~~~~~~ 67 (84)
T cd07045 40 TVKITGDVAAVKAAVEAGAAAAERIGEL 67 (84)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHhccCcE
Confidence 6788999999999999999999887653
No 28
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=25.94 E-value=1.1e+02 Score=20.48 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=27.4
Q ss_pred hHHhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHH
Q psy9370 46 IAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 46 ~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~~ 85 (101)
.|+|...|.++|+ +.....+--|+...+.+++++++.+
T Consensus 19 ~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~~ 56 (144)
T PF00994_consen 19 GPFLAALLEELGI--EVIRYGIVPDDPDAIKEALRRALDR 56 (144)
T ss_dssp HHHHHHHHHHTTE--EEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--eeeEEEEECCCHHHHHHHHHhhhcc
Confidence 5888988888887 5555555558888888888655544
No 29
>KOG0496|consensus
Probab=25.73 E-value=91 Score=27.40 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=42.7
Q ss_pred HHHhHHHHHHH----HHHHcCCCc-CCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccch
Q psy9370 11 DVKNNEDKIYS----IAKRYGGIP-AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKT 72 (101)
Q Consensus 11 ~V~~~~~~~~~----i~~~~GG~~-~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v 72 (101)
+++...+.+.. +..+.||=. +.+---|-..-.|+-.++-+..+.....++.++.|.++|=..
T Consensus 143 ~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mC 209 (649)
T KOG0496|consen 143 EMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMC 209 (649)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEe
Confidence 35555555555 777888832 222112223555677788899999999999999999999654
No 30
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.50 E-value=1.6e+02 Score=20.01 Aligned_cols=38 Identities=5% Similarity=-0.148 Sum_probs=27.9
Q ss_pred hhHHhhhhhhhcccceeeeeccccccchHHHHHHHHHHHH
Q psy9370 45 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 84 (101)
Q Consensus 45 ~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~ 84 (101)
+.|+|+..|.++| ++..+..+--|+...+.+.+++++.
T Consensus 28 n~~~l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~ 65 (144)
T TIGR00177 28 NGPLLAALLEEAG--FNVSRLGIVPDDPEEIREILRKAVD 65 (144)
T ss_pred cHHHHHHHHHHCC--CeEEEEeecCCCHHHHHHHHHHHHh
Confidence 4689999999988 4556666666888887777766543
No 31
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=23.00 E-value=50 Score=23.11 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=17.9
Q ss_pred hhhhhhh--HHhhhhhh-hcccceeeeecccc
Q psy9370 40 YMLTYII--AYIRDFAC-DYYFIGDSFETSVP 68 (101)
Q Consensus 40 ~~~rf~~--pYlRd~l~-~~G~~~DT~ETA~~ 68 (101)
.-.+|.. ||||+.-- +-.|+.|-|..+|+
T Consensus 10 Llk~f~alGPYlRE~qc~e~~ffFDCLaVCVn 41 (125)
T PF07417_consen 10 LLKKFAALGPYLREGQCQEDRFFFDCLAVCVN 41 (125)
T ss_dssp HHHHHHTT-TTB-GGG-BTTEEEEEEEEEES-
T ss_pred HHHHHHhhCchhcccccccCcEeeechhhhcc
Confidence 3445654 99999844 44577888877775
No 32
>PF03235 DUF262: Protein of unknown function DUF262; InterPro: IPR004919 This entry is found in prokaryotic proteins of unknown function.
Probab=22.82 E-value=31 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.0
Q ss_pred hhhH-HhhhhhhhcccceeeeeccccccchHHHHHHHHH
Q psy9370 44 YIIA-YIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (101)
Q Consensus 44 f~~p-YlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~ 81 (101)
|.+| |.|++.|+. .++..|++.+..
T Consensus 12 ~~iP~yQR~yvW~~-------------~~~~~Li~si~~ 37 (221)
T PF03235_consen 12 IVIPDYQRDYVWDE-------------EQIEELIDSILE 37 (221)
T ss_pred ccCCCCCCCCccCH-------------HHHHHHHHHHHh
Confidence 8888 999999987 667777777744
No 33
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=21.99 E-value=58 Score=19.50 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=12.1
Q ss_pred hhhhhhHHhhhhhhhcc
Q psy9370 41 MLTYIIAYIRDFACDYY 57 (101)
Q Consensus 41 ~~rf~~pYlRd~l~~~G 57 (101)
++|+-+||++|.-...|
T Consensus 7 ~h~~~g~~I~~w~~~r~ 23 (71)
T PF04304_consen 7 NHRLFGPYIRNWEEHRG 23 (71)
T ss_pred cCchhHHHHHHHHHCCC
Confidence 44777899999665544
No 34
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=21.83 E-value=46 Score=22.46 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=26.5
Q ss_pred CcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccc
Q psy9370 29 IPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSV 67 (101)
Q Consensus 29 ~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~ 67 (101)
+.+|.+ ...+|-.|-+++.+.++|+-+|.+.|..
T Consensus 58 liiGtG-----~~~~~~~~~~~~~l~~~gi~vevm~T~~ 91 (114)
T cd05125 58 LVIGTG-----RKSRPLSPELRKYFKKLGIAVEVVDTRN 91 (114)
T ss_pred EEEccC-----CCCCcCCHHHHHHHHHcCCEEEEECHHH
Confidence 455763 3356777899999999999999999964
No 35
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=21.20 E-value=2.8e+02 Score=21.91 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=39.0
Q ss_pred HHhHHHHHHHHHHHcCCCcC-------------C-------CcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccc
Q psy9370 12 VKNNEDKIYSIAKRYGGIPA-------------G-------ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK 71 (101)
Q Consensus 12 V~~~~~~~~~i~~~~GG~~~-------------G-------~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~ 71 (101)
|....+.+.+.+++.+|-.+ + ..-.+.|.+ |=-.+.+|..|.+.|++.|. .
T Consensus 234 v~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~~YR~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~~--------~ 304 (341)
T CHL00149 234 VREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQEKEAWVA-RDPIKKLKSYIIDNELASQK--------E 304 (341)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCccCCCHHHHHHHhc-CCHHHHHHHHHHHcCCCCHH--------H
Confidence 44455667777777666211 1 112355664 22224788999999998773 4
Q ss_pred hHHHHHHHHHHHHHHH
Q psy9370 72 TVLLCINVKKRLTREC 87 (101)
Q Consensus 72 v~~l~~~v~~al~~a~ 87 (101)
+..+.+++++.+.+++
T Consensus 305 ~~~i~~e~~~~v~~a~ 320 (341)
T CHL00149 305 LNKIQREVKIEIEQAV 320 (341)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555556655555553
No 36
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=20.90 E-value=45 Score=23.33 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=26.9
Q ss_pred hhhhhhhhHHhhhhhhhcccceeeeecccc
Q psy9370 39 GYMLTYIIAYIRDFACDYYFIGDSFETSVP 68 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~ 68 (101)
..++||--|-+|..+...|+-+|.|-|.+.
T Consensus 78 G~~~rf~p~~l~aal~~~gIsve~Mst~AA 107 (127)
T COG3737 78 GARLRFPPPKLRAALKAAGISVEPMSTGAA 107 (127)
T ss_pred CccccCCCHHHHHHHHHcCCccccccchhh
Confidence 567899888999999999999999999765
No 37
>PF13250 DUF4041: Domain of unknown function (DUF4041)
Probab=20.79 E-value=1.1e+02 Score=18.18 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=18.0
Q ss_pred eeeeccccccchHHHHHHHHHHHHH
Q psy9370 61 DSFETSVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 61 DT~ETA~~Ws~v~~l~~~v~~al~~ 85 (101)
|..=.-++|+|++.+-+.|+.+...
T Consensus 12 D~~i~kv~~~Ni~~~~~rI~ksf~~ 36 (56)
T PF13250_consen 12 DAAISKVKYNNIDTMEKRIEKSFEQ 36 (56)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHH
Confidence 3333458999999998888776543
No 38
>PRK09487 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit; Provisional
Probab=20.66 E-value=49 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=21.6
Q ss_pred HhhhhhhhcccceeeeeccccccchHHH
Q psy9370 48 YIRDFACDYYFIGDSFETSVPWDKTVLL 75 (101)
Q Consensus 48 YlRd~l~~~G~~~DT~ETA~~Ws~v~~l 75 (101)
=+|+.+||.|+..|+++++...+.+.-.
T Consensus 88 GIRHL~wD~g~g~~~~~~~~~sa~~v~~ 115 (129)
T PRK09487 88 GIRHLLMDFGYLEETLEAGKRSAKISFV 115 (129)
T ss_pred hHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 3899999999998888888776554433
Done!