Query psy9370
Match_columns 101
No_of_seqs 104 out of 272
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.4 8.8E-13 3E-17 108.5 7.6 94 1-94 395-488 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.3 8.7E-12 3E-16 103.4 9.0 96 2-97 467-562 (658)
3 1e8g_A Vanillyl-alcohol oxidas 97.5 0.00017 5.9E-09 58.6 6.1 81 2-83 354-447 (560)
4 1f0x_A DLDH, D-lactate dehydro 97.4 4.2E-05 1.5E-09 62.9 1.2 81 2-86 393-480 (571)
5 3pm9_A Putative oxidoreductase 97.1 0.001 3.5E-08 53.3 7.0 81 1-86 291-377 (476)
6 2exr_A Cytokinin dehydrogenase 95.7 0.0013 4.3E-08 53.2 -1.0 67 6-81 324-401 (524)
7 1wvf_A 4-cresol dehydrogenase 94.3 0.091 3.1E-06 42.0 6.2 79 2-84 323-417 (520)
8 2ozl_A PDHE1-A type I, pyruvat 67.8 29 0.00099 26.6 8.1 76 5-88 229-326 (365)
9 1hsk_A UDP-N-acetylenolpyruvoy 59.1 8.4 0.00029 28.9 3.5 35 1-35 274-309 (326)
10 1qs0_A 2-oxoisovalerate dehydr 49.6 79 0.0027 24.5 7.8 76 5-89 273-370 (407)
11 1l7b_A DNA ligase; BRCT, autos 45.2 12 0.00041 23.2 2.1 39 1-42 11-61 (92)
12 2fvt_A Conserved hypothetical 40.0 9.4 0.00032 25.5 1.0 28 39-66 76-103 (135)
13 1w1o_A Cytokinin dehydrogenase 37.0 9.4 0.00032 30.4 0.7 73 10-85 344-420 (534)
14 3vej_A Ubiquitin-like protein 35.9 9.9 0.00034 20.9 0.5 16 64-79 3-18 (41)
15 4hhu_A OR280; engineered prote 35.6 61 0.0021 22.0 4.5 92 1-95 4-117 (170)
16 2gm2_A Conserved hypothetical 34.5 12 0.0004 24.9 0.8 28 39-66 73-100 (132)
17 2ab1_A Hypothetical protein; H 34.5 12 0.00039 24.6 0.7 29 39-67 70-99 (122)
18 2fi9_A Outer membrane protein; 33.2 14 0.00048 24.3 1.0 26 41-66 79-104 (128)
19 4e17_B Catenin alpha-1; four h 30.9 36 0.0012 18.5 2.2 26 65-90 6-35 (40)
20 1w85_A Pyruvate dehydrogenase 29.3 1.9E+02 0.0063 21.9 8.4 76 5-89 233-331 (368)
21 1zzk_A Heterogeneous nuclear r 27.5 61 0.0021 19.0 3.1 26 3-28 54-79 (82)
22 2kxh_B Peptide of FAR upstream 27.0 70 0.0024 16.3 2.8 19 13-31 11-29 (31)
23 3l3e_A DNA topoisomerase 2-bin 27.0 45 0.0015 20.4 2.5 27 1-30 19-45 (107)
24 3cpk_A Uncharacterized protein 25.7 22 0.00077 24.4 1.0 29 39-67 97-125 (150)
25 3rpj_A Curlin genes transcript 25.3 24 0.00082 24.0 1.0 38 31-68 6-46 (134)
26 1vju_A Coproporphyrinogen III 22.9 66 0.0023 24.6 3.2 78 7-87 145-222 (309)
27 1ydo_A HMG-COA lyase; TIM-barr 22.5 78 0.0027 23.4 3.5 65 11-81 119-197 (307)
28 1cxq_A Avian sarcoma virus int 22.0 1.4E+02 0.0048 18.7 4.4 71 15-90 54-127 (162)
29 2cw6_A Hydroxymethylglutaryl-C 21.6 1.3E+02 0.0046 21.7 4.6 64 14-83 121-198 (298)
30 1txn_A Coproporphyrinogen III 21.2 72 0.0025 24.6 3.1 78 7-87 162-239 (328)
31 3zzp_A TS9, ribosomal protein 20.5 94 0.0032 18.5 3.0 21 8-28 57-77 (77)
32 2wdq_C Succinate dehydrogenase 20.3 13 0.00045 24.2 -1.1 26 48-73 88-113 (129)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.37 E-value=8.8e-13 Score=108.48 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=87.2
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHH
Q psy9370 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 80 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~ 80 (101)
+++.|+|+++.|+.+.+++.++|+++||...++...+.|+..|+..||+|+.++++|.+.+++||++||++++++++.++
T Consensus 395 llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~ 474 (584)
T 2uuu_A 395 SIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAK 474 (584)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHH
Confidence 36789999999999999999999999998877778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC
Q psy9370 81 KRLTRECTGRWLPV 94 (101)
Q Consensus 81 ~al~~a~~~~g~~~ 94 (101)
+.+.+.+.++|.+.
T Consensus 475 ~~l~~~~~~~g~~~ 488 (584)
T 2uuu_A 475 QTFVKHFKDQGIPA 488 (584)
T ss_dssp HHHHHHHHTTTCCE
T ss_pred HHHHhHHHhcCCee
Confidence 99999999888764
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.29 E-value=8.7e-12 Score=103.38 Aligned_cols=96 Identities=52% Similarity=0.997 Sum_probs=90.4
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHHH
Q psy9370 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK 81 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~ 81 (101)
++.|||+.+.+..+.+.+.++++++||+..++..++.|+..||..||+|+..++.+.+.+++||++||++++.+++++++
T Consensus 467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~ 546 (658)
T 4bby_A 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE 546 (658)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcc
Q psy9370 82 RLTRECTGRWLPVLES 97 (101)
Q Consensus 82 al~~a~~~~g~~~~~~ 97 (101)
.+.+.+.+.+...+.+
T Consensus 547 ~l~~~~~~~g~~~~~~ 562 (658)
T 4bby_A 547 RIRRECKEKGVQFPPL 562 (658)
T ss_dssp HHHHHHHHTTCSSCCE
T ss_pred HHHHHHHhcCcccccc
Confidence 9999999888765543
No 3
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.48 E-value=0.00017 Score=58.60 Aligned_cols=81 Identities=10% Similarity=-0.094 Sum_probs=58.9
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCCcC--CCcc--hhhhhhhhhhh----HHhhhh---hhhcccceeeeeccccc-
Q psy9370 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW- 69 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~--g~~W~~~rf~~----pYlRd~---l~~~G~~~DT~ETA~~W- 69 (101)
++.|+|+++.|+.+.+++.++|+++|+..+ ...+ .+.|.. |+.. |+++.. .|..|=...++++++||
T Consensus 354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~ 432 (560)
T 1e8g_A 354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS 432 (560)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence 466999999999999999999999998533 2222 345664 7665 776653 23332234668999999
Q ss_pred -cchHHHHHHHHHHH
Q psy9370 70 -DKTVLLCINVKKRL 83 (101)
Q Consensus 70 -s~v~~l~~~v~~al 83 (101)
++++++++.+++.+
T Consensus 433 ~~~l~~~~~~~~~~~ 447 (560)
T 1e8g_A 433 GEDAMMQYAVTKKRC 447 (560)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 99999999996644
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=97.36 E-value=4.2e-05 Score=62.87 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=59.5
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCCcC--CCcchhhhhhhhhhhH----Hhhhhhhh-cccceeeeeccccccchHH
Q psy9370 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL 74 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~g~~W~~~rf~~p----YlRd~l~~-~G~~~DT~ETA~~Ws~v~~ 74 (101)
++-|+|+.... ..+++.++++.++|... .+..+++|...||..+ ++|+...+ .| ...++|||+||++++.
T Consensus 393 lve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~ 469 (571)
T 1f0x_A 393 LLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW 469 (571)
T ss_dssp EEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred EEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence 45666766532 35666778888866433 4567788888999996 88887665 33 3689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy9370 75 LCINVKKRLTRE 86 (101)
Q Consensus 75 l~~~v~~al~~a 86 (101)
+ +.+++.+.+.
T Consensus 470 ~-~~~~~~l~~~ 480 (571)
T 1f0x_A 470 Y-EHLPPEIDSQ 480 (571)
T ss_dssp S-CCCCHHHHTT
T ss_pred H-HHHHHHHHhh
Confidence 9 8887777654
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=97.15 E-value=0.001 Score=53.27 Aligned_cols=81 Identities=10% Similarity=-0.075 Sum_probs=58.1
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCCc---CC--C-cchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHH
Q psy9370 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIP---AG--E-SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~---~G--~-~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~ 74 (101)
+++-|+|+++.++.+.+++.++|.++|+.. +- + ...+-|. .|-..+. .+...|. ..+.++|+|||++++
T Consensus 291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~~---~~~~~g~-~~~~Dv~vP~~~l~~ 365 (476)
T 3pm9_A 291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEISP---AQKPEGG-SIKHDISVPVAAVPQ 365 (476)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHHH---HTGGGCC-EECCEEECCGGGHHH
T ss_pred EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHHH---HHhhcCC-ceeEEEEeeHHHHHH
Confidence 367889988888888999999999998742 11 1 1234454 4544431 2233454 689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy9370 75 LCINVKKRLTRE 86 (101)
Q Consensus 75 l~~~v~~al~~a 86 (101)
+++.+++.+.+.
T Consensus 366 ~~~~~~~~~~~~ 377 (476)
T 3pm9_A 366 FIEQANAAVVAL 377 (476)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998888776
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=95.66 E-value=0.0013 Score=53.18 Aligned_cols=67 Identities=6% Similarity=-0.132 Sum_probs=49.2
Q ss_pred eC-ChHHHHhHHHHHHHHHHHcCCCcCCCc----------chhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHH
Q psy9370 6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 74 (101)
Q Consensus 6 EG-~~~~V~~~~~~~~~i~~~~GG~~~G~~----------~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~ 74 (101)
+| +++.|+.+.+++.++++.+||...... ....|...++..|.+.. . ++++++|||++++
T Consensus 324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~ 394 (524)
T 2exr_A 324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD 394 (524)
T ss_dssp TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence 78 778899999999999999999755432 22336655554443331 1 3699999999999
Q ss_pred HHHHHHH
Q psy9370 75 LCINVKK 81 (101)
Q Consensus 75 l~~~v~~ 81 (101)
+++.|++
T Consensus 395 ~~~~v~~ 401 (524)
T 2exr_A 395 FNRTVFK 401 (524)
T ss_dssp HHHHCCC
T ss_pred HHHHHHH
Confidence 9988855
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=94.26 E-value=0.091 Score=42.01 Aligned_cols=79 Identities=11% Similarity=-0.119 Sum_probs=48.1
Q ss_pred EEEEeCChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhh----------------hcccceeeeec
Q psy9370 2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC----------------DYYFIGDSFET 65 (101)
Q Consensus 2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~----------------~~G~~~DT~ET 65 (101)
++.|+|++++++.+.+.+.++|+++|+..+. ...+.+ +-...++|..+. ..+.+.++.-.
T Consensus 323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 398 (520)
T 1wvf_A 323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS 398 (520)
T ss_dssp EEEEEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence 4559999999999999999999999986432 112221 222233443322 01222233334
Q ss_pred cccccchHHHHHHHHHHHH
Q psy9370 66 SVPWDKTVLLCINVKKRLT 84 (101)
Q Consensus 66 A~~Ws~v~~l~~~v~~al~ 84 (101)
..+|++++++++.+++.+.
T Consensus 399 p~~~~~l~~~~~~~~~~~~ 417 (520)
T 1wvf_A 399 EARGSECKKQAAMAKRVLH 417 (520)
T ss_dssp ESCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5566899998888865543
No 8
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=67.79 E-value=29 Score=26.56 Aligned_cols=76 Identities=11% Similarity=0.018 Sum_probs=48.9
Q ss_pred EeCC-hHHHHhHHHHHHHHHHHcCCCcC-------------CC--------cchhhhhhhhhhhHHhhhhhhhcccceee
Q psy9370 5 VLGD-PEDVKNNEDKIYSIAKRYGGIPA-------------GE--------SNGRRGYMLTYIIAYIRDFACDYYFIGDS 62 (101)
Q Consensus 5 fEG~-~~~V~~~~~~~~~i~~~~GG~~~-------------G~--------~~g~~W~~~rf~~pYlRd~l~~~G~~~DT 62 (101)
.+|. ...|....+.+.+.+++.+|-.+ +. ...+.|++.+=-+.-+++.|.+.|++.+
T Consensus 229 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~- 307 (365)
T 2ozl_A 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASV- 307 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCH-
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCH-
Confidence 4663 46677777888888877777321 11 1235676544334577899999999877
Q ss_pred eeccccccchHHHHHHHHHHHHHHHh
Q psy9370 63 FETSVPWDKTVLLCINVKKRLTRECT 88 (101)
Q Consensus 63 ~ETA~~Ws~v~~l~~~v~~al~~a~~ 88 (101)
+.+.++.+++++.+.++++
T Consensus 308 -------~~~~~i~~~~~~~v~~a~~ 326 (365)
T 2ozl_A 308 -------EELKEIDVEVRKEIEDAAQ 326 (365)
T ss_dssp -------HHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 4556666777766666544
No 9
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=59.09 E-value=8.4 Score=28.90 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=29.5
Q ss_pred CEEEEeC-ChHHHHhHHHHHHHHHHHcCCCcCCCcc
Q psy9370 1 MALLVLG-DPEDVKNNEDKIYSIAKRYGGIPAGESN 35 (101)
Q Consensus 1 ~~~gfEG-~~~~V~~~~~~~~~i~~~~GG~~~G~~~ 35 (101)
+++-++| +.+++....+.+.+++++++|+.++.++
T Consensus 274 ~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 274 FMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 3566778 6788999999999999999999887753
No 10
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=49.64 E-value=79 Score=24.49 Aligned_cols=76 Identities=11% Similarity=-0.035 Sum_probs=46.9
Q ss_pred EeCCh-HHHHhHHHHHHHHHHHcCCCcC-------------CCcc--------hhhhhhhhhhhHHhhhhhhhcccceee
Q psy9370 5 VLGDP-EDVKNNEDKIYSIAKRYGGIPA-------------GESN--------GRRGYMLTYIIAYIRDFACDYYFIGDS 62 (101)
Q Consensus 5 fEG~~-~~V~~~~~~~~~i~~~~GG~~~-------------G~~~--------g~~W~~~rf~~pYlRd~l~~~G~~~DT 62 (101)
.+|.+ ..|....+.+.+.+++.+|-.+ +..+ -+.|.+ +=-+.-+++.|.+.|++.+
T Consensus 273 VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~~- 350 (407)
T 1qs0_A 273 VDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSE- 350 (407)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCCH-
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCCH-
Confidence 45643 5677777888888877777211 1111 236664 3222378899999999877
Q ss_pred eeccccccchHHHHHHHHHHHHHHHhh
Q psy9370 63 FETSVPWDKTVLLCINVKKRLTRECTG 89 (101)
Q Consensus 63 ~ETA~~Ws~v~~l~~~v~~al~~a~~~ 89 (101)
+.+.++.+++++.+.++++.
T Consensus 351 -------~~~~~i~~~~~~~v~~a~~~ 370 (407)
T 1qs0_A 351 -------EEHQATTAEFEAAVIAAQKE 370 (407)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665443
No 11
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=45.23 E-value=12 Score=23.24 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=27.4
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCC------------cCCCcchhhhhhh
Q psy9370 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI------------PAGESNGRRGYML 42 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~------------~~G~~~g~~W~~~ 42 (101)
+++.|+|.-.. .+..+.+++.++||. ..|+.+|.+..+.
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA 61 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKA 61 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHH
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHH
Confidence 46788887644 578888999999994 3466666555443
No 12
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=39.98 E-value=9.4 Score=25.53 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.3
Q ss_pred hhhhhhhhHHhhhhhhhcccceeeeecc
Q psy9370 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DT~ETA 66 (101)
....+|--|-+|+.|.++|+-+|.+.|.
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 4556777789999999999999999996
No 13
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=36.97 E-value=9.4 Score=30.35 Aligned_cols=73 Identities=8% Similarity=-0.058 Sum_probs=39.8
Q ss_pred HHHHhHHHHHHHHHHHcCCCcCC-CcchhhhhhhhhhhHH--hhhh-hhhcccceeeeeccccccchHHHHHHHHHHHHH
Q psy9370 10 EDVKNNEDKIYSIAKRYGGIPAG-ESNGRRGYMLTYIIAY--IRDF-ACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 85 (101)
Q Consensus 10 ~~V~~~~~~~~~i~~~~GG~~~G-~~~g~~W~~~rf~~pY--lRd~-l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~~ 85 (101)
+.++...+.+.++++.+|+.... ..+...|.+ ++...+ +|+. ++..+- -..++++|||+++++.+.+.+++.+
T Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~-~~~~~~w~~r~~~~~~~~~--~~~d~~vP~s~l~~~~~~~~~~l~~ 420 (534)
T 1w1o_A 344 AAVDQELASVLGTLSYVEGFAFQRDVAYAAFLD-RVHGEEVALNKLGLWRVPH--PWLNMFVPRSRIADFDRGVFKGILQ 420 (534)
T ss_dssp CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHT-HHHHHHHHHHHTTCSSSCC--CCEEEEEEGGGHHHHHHHHTTTTTT
T ss_pred hhhHHHHHHHHHhhcccCCcceeccchHHHHhh-hhhhhHHHHhhccccccCC--ccccEEecHHHHHhHHHHHHHHHhh
Confidence 66777888888888777773222 111222321 222221 2221 121111 0238899999999999888654443
No 14
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=35.90 E-value=9.9 Score=20.86 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=12.8
Q ss_pred eccccccchHHHHHHH
Q psy9370 64 ETSVPWDKTVLLCINV 79 (101)
Q Consensus 64 ETA~~Ws~v~~l~~~v 79 (101)
.-.+||+.|..|.++-
T Consensus 3 ~l~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 3 DLTVPWDDIEALLKNN 18 (41)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHH
Confidence 3469999999998765
No 15
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=35.62 E-value=61 Score=21.98 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=52.7
Q ss_pred CEEEEeCCh-HHHHhHHHHHHHHHHHcCCCcC----CCc--------c--hhhh-------hhhhhhhHHhhhhhhhccc
Q psy9370 1 MALLVLGDP-EDVKNNEDKIYSIAKRYGGIPA----GES--------N--GRRG-------YMLTYIIAYIRDFACDYYF 58 (101)
Q Consensus 1 ~~~gfEG~~-~~V~~~~~~~~~i~~~~GG~~~----G~~--------~--g~~W-------~~~rf~~pYlRd~l~~~G~ 58 (101)
|.+.|+|++ +..+-..+...+-++++-|... |.. | .++= ...-|++.- ...-+|-
T Consensus 4 m~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni~v---~y~imgs 80 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINV---QYQIMGS 80 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEE---EEEEECT
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEE---EEEEEeC
Confidence 578999988 5566677777788889988532 111 1 1111 111222210 0011233
Q ss_pred ceeeeeccccccchHHHHHHHHHHHHHHHhhcCCCCC
Q psy9370 59 IGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVL 95 (101)
Q Consensus 59 ~~DT~ETA~~Ws~v~~l~~~v~~al~~a~~~~g~~~~ 95 (101)
....+..-..=|++..+-.++++.++++-+=.|.-.+
T Consensus 81 gsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 81 GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 3344444444589999999999999988665554433
No 16
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=34.51 E-value=12 Score=24.87 Aligned_cols=28 Identities=4% Similarity=-0.121 Sum_probs=24.1
Q ss_pred hhhhhhhhHHhhhhhhhcccceeeeecc
Q psy9370 39 GYMLTYIIAYIRDFACDYYFIGDSFETS 66 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DT~ETA 66 (101)
....+|--|-+|+.|.+.|+-+|.+.|.
T Consensus 73 G~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 73 GERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp TTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 4555677789999999999999999995
No 17
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=34.49 E-value=12 Score=24.59 Aligned_cols=29 Identities=7% Similarity=-0.049 Sum_probs=24.4
Q ss_pred hhhhhh-hhHHhhhhhhhcccceeeeeccc
Q psy9370 39 GYMLTY-IIAYIRDFACDYYFIGDSFETSV 67 (101)
Q Consensus 39 W~~~rf-~~pYlRd~l~~~G~~~DT~ETA~ 67 (101)
....+| -.|-+++.|.++|+-+|.+.|..
T Consensus 70 G~~~~~~~~~~~~~~l~~~gI~ve~m~T~~ 99 (122)
T 2ab1_A 70 GMSEALKVPSSTVEYLKKHGIDVRVLQTEQ 99 (122)
T ss_dssp CSSCCSCCCHHHHHHHHHTTCEEEEECHHH
T ss_pred CCCCccCCCHHHHHHHHHcCCEEEEeCHHH
Confidence 456677 56899999999999999999853
No 18
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=33.20 E-value=14 Score=24.26 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.1
Q ss_pred hhhhhhHHhhhhhhhcccceeeeecc
Q psy9370 41 MLTYIIAYIRDFACDYYFIGDSFETS 66 (101)
Q Consensus 41 ~~rf~~pYlRd~l~~~G~~~DT~ETA 66 (101)
..+|--|-+|+.|.++|+-+|.+.|.
T Consensus 79 ~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 79 ELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp SCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 36777899999999999999999994
No 19
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=30.91 E-value=36 Score=18.49 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.2
Q ss_pred cccccc----chHHHHHHHHHHHHHHHhhc
Q psy9370 65 TSVPWD----KTVLLCINVKKRLTRECTGR 90 (101)
Q Consensus 65 TA~~Ws----~v~~l~~~v~~al~~a~~~~ 90 (101)
++.||+ +|..-|++|++||+.-+.+.
T Consensus 6 s~~tr~~rkerIv~eCnavrqALQdLlseY 35 (40)
T 4e17_B 6 SSCTRDDRRERIVAECNAVRQALQDLLSEY 35 (40)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 57889999999999988774
No 20
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=29.32 E-value=1.9e+02 Score=21.93 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=48.7
Q ss_pred EeC-ChHHHHhHHHHHHHHHHHcCCCcC---------CCc-----c--------hhhhhhhhhhhHHhhhhhhhccccee
Q psy9370 5 VLG-DPEDVKNNEDKIYSIAKRYGGIPA---------GES-----N--------GRRGYMLTYIIAYIRDFACDYYFIGD 61 (101)
Q Consensus 5 fEG-~~~~V~~~~~~~~~i~~~~GG~~~---------G~~-----~--------g~~W~~~rf~~pYlRd~l~~~G~~~D 61 (101)
.+| +...|....+.+.+.+++.+|-.+ |-. + -+.|.+ +=-++-+|+.|.+.|++.+
T Consensus 233 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~ 311 (368)
T 1w85_A 233 VDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSE 311 (368)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHT-TCHHHHHHHHHHHTTCCCH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHcCCCCH
Confidence 456 346787888888888877766211 111 1 356775 3223478899999999877
Q ss_pred eeeccccccchHHHHHHHHHHHHHHHhh
Q psy9370 62 SFETSVPWDKTVLLCINVKKRLTRECTG 89 (101)
Q Consensus 62 T~ETA~~Ws~v~~l~~~v~~al~~a~~~ 89 (101)
+.+.++.+++++.+.++.+.
T Consensus 312 --------~~~~~i~~~~~~~v~~a~~~ 331 (368)
T 1w85_A 312 --------EEENNVIEQAKEEIKEAIKK 331 (368)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777766543
No 21
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=27.55 E-value=61 Score=19.01 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=21.7
Q ss_pred EEEeCChHHHHhHHHHHHHHHHHcCC
Q psy9370 3 LLVLGDPEDVKNNEDKIYSIAKRYGG 28 (101)
Q Consensus 3 ~gfEG~~~~V~~~~~~~~~i~~~~GG 28 (101)
+-..|+++.|+.....+.++.+..+|
T Consensus 54 v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 54 ITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 45678899999999999999887765
No 22
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=27.04 E-value=70 Score=16.32 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHcCCCcC
Q psy9370 13 KNNEDKIYSIAKRYGGIPA 31 (101)
Q Consensus 13 ~~~~~~~~~i~~~~GG~~~ 31 (101)
.....++++|+.+.||-..
T Consensus 11 adA~~RaRQIaAKig~~~~ 29 (31)
T 2kxh_B 11 KDALQRARQIAAKIGGDAG 29 (31)
T ss_dssp HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3457789999999998654
No 23
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=26.97 E-value=45 Score=20.39 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=20.1
Q ss_pred CEEEEeCChHHHHhHHHHHHHHHHHcCCCc
Q psy9370 1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIP 30 (101)
Q Consensus 1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~ 30 (101)
+++.|.|... ..+..+.++++++||..
T Consensus 19 ~~i~isg~~~---~~r~~l~~li~~~Gg~v 45 (107)
T 3l3e_A 19 VVVCVSKKLS---KKQSELNGIAASLGADY 45 (107)
T ss_dssp CEEEECGGGG---GGHHHHHHHHHHTTCEE
T ss_pred eEEEEeCCCh---HhHHHHHHHHHHcCCEE
Confidence 3567777654 46788889999999953
No 24
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=25.74 E-value=22 Score=24.35 Aligned_cols=29 Identities=7% Similarity=-0.168 Sum_probs=24.5
Q ss_pred hhhhhhhhHHhhhhhhhcccceeeeeccc
Q psy9370 39 GYMLTYIIAYIRDFACDYYFIGDSFETSV 67 (101)
Q Consensus 39 W~~~rf~~pYlRd~l~~~G~~~DT~ETA~ 67 (101)
....+|-.|-++..|.++|+-+|.+.|..
T Consensus 97 G~~~~~l~p~~~~~L~~~GIgvE~M~T~a 125 (150)
T 3cpk_A 97 GRRQHLLGPEQVRPLLAMGVGVEAMDTQA 125 (150)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHH
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEeCHHH
Confidence 44556878899999999999999999853
No 25
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=25.32 E-value=24 Score=23.95 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCCcchhhhhhhhhhh--HHhhhhhh-hcccceeeeecccc
Q psy9370 31 AGESNGRRGYMLTYII--AYIRDFAC-DYYFIGDSFETSVP 68 (101)
Q Consensus 31 ~G~~~g~~W~~~rf~~--pYlRd~l~-~~G~~~DT~ETA~~ 68 (101)
+.++.-+.=.-.+|.. ||||+.-- +-.|+.|-+..+|+
T Consensus 6 lp~~~~~~RLlk~f~alGPYlRE~qc~e~~ffFDCLaVCVn 46 (134)
T 3rpj_A 6 SSLHPTRGKLLKRFAQIGPYIREQQCQESQFFFDCLAVCVN 46 (134)
T ss_dssp --CCSCHHHHHHHHHTTCTTBCGGGC-CCEEEEEEEEEESC
T ss_pred cCCCCChhHHHHHHHHhCchhchhhccCCCEEEeeeeEecc
Confidence 3344444455556765 99999854 44577888888776
No 26
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=22.88 E-value=66 Score=24.62 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=58.4
Q ss_pred CChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHH
Q psy9370 7 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 86 (101)
Q Consensus 7 G~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~~a 86 (101)
+.++++...-+...+.|..||...= .-.++|-+--|.+|.--+.-===|++.|.+.+ -+|++.-++.++|-+++..+
T Consensus 145 ~~~eD~~hFH~~~k~aCd~~~~~~Y--p~fK~wCDeYFyl~HR~E~RGVGGIFfDdl~~-~~~e~~faf~~~vg~afl~a 221 (309)
T 1vju_A 145 AVEEDCRDFHQVAQDLCKPFGADVY--ARFKGWCDEYFFIPYRNEARGIGGLFFDDLNE-WPFEKCFEFVQAVGKGYMDA 221 (309)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCTTHH--HHHHHHHHHHSEEGGGTEESSSEEEEEEEECS-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCchhh--HHHHHHHHHhcchhhcCCCCCCCeEecCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999985431 23789999988888755555556788999986 46777777778777777666
Q ss_pred H
Q psy9370 87 C 87 (101)
Q Consensus 87 ~ 87 (101)
.
T Consensus 222 Y 222 (309)
T 1vju_A 222 Y 222 (309)
T ss_dssp H
T ss_pred H
Confidence 4
No 27
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=22.55 E-value=78 Score=23.39 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=39.3
Q ss_pred HHHhHHHHHHHHHHHcCCCc-------CCCcchhhhhhhhhhhHHhhhh---hhhccc----ceeeeeccccccchHHHH
Q psy9370 11 DVKNNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLC 76 (101)
Q Consensus 11 ~V~~~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~rf~~pYlRd~---l~~~G~----~~DT~ETA~~Ws~v~~l~ 76 (101)
++-.....+.+.++++|-.. .|.. ..+|.+..|+-+. +.++|. ++||.-.+.| ..+..+.
T Consensus 119 e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~v~~lv 192 (307)
T 1ydo_A 119 ESLHILKQVNNDAQKANLTTRAYLSTVFGCP-----YEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANP-AQVETVL 192 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECTTCBT-----TTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEecCC-----cCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCH-HHHHHHH
Confidence 33445566778888888743 2221 2345544555554 356665 7899999888 4555666
Q ss_pred HHHHH
Q psy9370 77 INVKK 81 (101)
Q Consensus 77 ~~v~~ 81 (101)
+.+++
T Consensus 193 ~~l~~ 197 (307)
T 1ydo_A 193 EALLA 197 (307)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65544
No 28
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=21.98 E-value=1.4e+02 Score=18.72 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCC-cCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccc--hHHHHHHHHHHHHHHHhhc
Q psy9370 15 NEDKIYSIAKRYGGI-PAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLTRECTGR 90 (101)
Q Consensus 15 ~~~~~~~i~~~~GG~-~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~--v~~l~~~v~~al~~a~~~~ 90 (101)
..+...++...+|-- .+=..+|.. |....+++++..+|+-....-...||+| ++..+..+++.+..-+...
T Consensus 54 v~~~l~~~~~~~g~p~~i~sDnG~~-----f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~tlk~~~~~~~~~~ 127 (162)
T 1cxq_A 54 AQHHWATAIAVLGRPKAIKTDNGSC-----FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGD 127 (162)
T ss_dssp HHHHHHHHHHHHCCCSEEECCSCHH-----HHSHHHHHHHHHHTCEEECCCCC----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCeEEEeCCchh-----hhhHHHHHHHHHCCCeEeeCCCCCCccCCEEehHHHHHHHHHHHHcCcc
Confidence 344555666677632 112223333 3334457888899987777777788988 7788888887777766554
No 29
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=21.63 E-value=1.3e+02 Score=21.71 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHcCCCc-------CCCcchhhhhhhhhhhHHhhhh---hhhccc----ceeeeeccccccchHHHHHHH
Q psy9370 14 NNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLCINV 79 (101)
Q Consensus 14 ~~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~rf~~pYlRd~---l~~~G~----~~DT~ETA~~Ws~v~~l~~~v 79 (101)
.....+.+.++++|-.. .|.. ..+|.+..|+-+. +.++|. ++||...+.| ..+..+.+.+
T Consensus 121 ~~~~~~i~~a~~~G~~v~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~~~~lv~~l 194 (298)
T 2cw6_A 121 QRFDAILKAAQSANISVRGYVSCALGCP-----YEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTP-GIMKDMLSAV 194 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTTCBT-----TTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeCC-----cCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCH-HHHHHHHHHH
Confidence 34555677888888643 2221 2344444455444 456665 7899998887 4566666666
Q ss_pred HHHH
Q psy9370 80 KKRL 83 (101)
Q Consensus 80 ~~al 83 (101)
++.+
T Consensus 195 ~~~~ 198 (298)
T 2cw6_A 195 MQEV 198 (298)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 5543
No 30
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A
Probab=21.17 E-value=72 Score=24.63 Aligned_cols=78 Identities=5% Similarity=-0.150 Sum_probs=57.9
Q ss_pred CChHHHHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhhhhHHhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHH
Q psy9370 7 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 86 (101)
Q Consensus 7 G~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~v~~al~~a 86 (101)
+.++++...-+...+.|.+||...= .-.++|-+--|.+|.--+.-===|++.|.|.+ -+|++.-++.++|-.++..+
T Consensus 162 ~~~eD~~hFH~~~K~aCd~~~~~~Y--p~fK~wCDeYFyi~HR~E~RGvGGIFfDdl~~-~~~e~~faf~~~vg~afl~a 238 (328)
T 1txn_A 162 LYEEDGQLFHQLHKDALDKHDTALY--PRFKKWCDEYFYITHRKETRGIGGIFFDDYDE-RDPQEILKMVEDCFDAFLPS 238 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTHH--HHHEECGGGGGGGGTCCCCCCCEEEEEEEECS-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHhcchhhcCCCCCCCeEecCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999985431 23689999988888755544455788999986 45777777778887777666
Q ss_pred H
Q psy9370 87 C 87 (101)
Q Consensus 87 ~ 87 (101)
+
T Consensus 239 Y 239 (328)
T 1txn_A 239 Y 239 (328)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=20.48 E-value=94 Score=18.54 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.1
Q ss_pred ChHHHHhHHHHHHHHHHHcCC
Q psy9370 8 DPEDVKNNEDKIYSIAKRYGG 28 (101)
Q Consensus 8 ~~~~V~~~~~~~~~i~~~~GG 28 (101)
++++++...+++..+..++||
T Consensus 57 ~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 57 DQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHhcCC
Confidence 456788899999999999987
No 32
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=20.32 E-value=13 Score=24.23 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.1
Q ss_pred HhhhhhhhcccceeeeeccccccchH
Q psy9370 48 YIRDFACDYYFIGDSFETSVPWDKTV 73 (101)
Q Consensus 48 YlRd~l~~~G~~~DT~ETA~~Ws~v~ 73 (101)
=+|+.+||+|+..||.++.-.+..+.
T Consensus 88 GiRhl~~D~G~g~~~~~~~~~~~~~v 113 (129)
T 2wdq_C 88 GIRHMMMDFGYLEETFEAGKRSAKIS 113 (129)
T ss_dssp HHHHHHHHTTSSCCSHHHHHHHHHHH
T ss_pred hHHHHHhhccccccccHHHHHHHHHH
Confidence 48999999999988877766555443
Done!