BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9372
         (57 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NAF|A Chain A, Structure Of The Intracellular Gating Ring From The Human
           High- Conductance Ca2+ Gated K+ Channel (Bk Channel)
          Length = 798

 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 14  RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
           R+   I  DT  WQ  YL+G   EMYTE LS +F G++FP   E
Sbjct: 225 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 266


>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring
 pdb|3U6N|B Chain B, Open Structure Of The Bk Channel Gating Ring
 pdb|3U6N|C Chain C, Open Structure Of The Bk Channel Gating Ring
 pdb|3U6N|D Chain D, Open Structure Of The Bk Channel Gating Ring
 pdb|3U6N|E Chain E, Open Structure Of The Bk Channel Gating Ring
 pdb|3U6N|F Chain F, Open Structure Of The Bk Channel Gating Ring
 pdb|3U6N|G Chain G, Open Structure Of The Bk Channel Gating Ring
 pdb|3U6N|H Chain H, Open Structure Of The Bk Channel Gating Ring
          Length = 696

 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 19  ISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
           I  +   WQ  YL+G   EMYTE LS +F G++FP   E
Sbjct: 178 IKIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTVCE 216


>pdb|3MT5|A Chain A, Crystal Structure Of The Human Bk Gating Apparatus
          Length = 726

 Score = 43.1 bits (100), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 14  RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
           R+   I  DT  WQ  YL+G   EMYTE LS +F G++FP   E
Sbjct: 175 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 216


>pdb|4HPF|A Chain A, Structure Of The Human Slo3 Gating Ring
 pdb|4HPF|B Chain B, Structure Of The Human Slo3 Gating Ring
          Length = 722

 Score = 31.2 bits (69), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 9/50 (18%)

Query: 7   QRVKVTPRTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQAS 56
           Q  KV P+         Q W+  +L     ++ T+ LS  F GM+FP+ +
Sbjct: 175 QNKKVMPK---------QTWKKHFLNSMKNKILTQRLSDDFAGMSFPEVA 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,896,358
Number of Sequences: 62578
Number of extensions: 58765
Number of successful extensions: 112
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 4
length of query: 57
length of database: 14,973,337
effective HSP length: 29
effective length of query: 28
effective length of database: 13,158,575
effective search space: 368440100
effective search space used: 368440100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)