BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9372
(57 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03720|SLO_DROME Calcium-activated potassium channel slowpoke OS=Drosophila
melanogaster GN=slo PE=1 SV=3
Length = 1200
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 20 SPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
SPD Q+W NDYL+GTG EMYTETLSP+F G+ F QA+E
Sbjct: 533 SPDMQSWTNDYLRGTGMEMYTETLSPTFIGIPFAQATE 570
>sp|Q95V25|SLO1_CAEEL Calcium-activated potassium channel slo-1 OS=Caenorhabditis elegans
GN=slo-1 PE=1 SV=2
Length = 1140
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 26 WQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
W N YL G G EMYT+TLS SF GMTFP+A +
Sbjct: 554 WLNLYLCGAGMEMYTDTLSHSFVGMTFPEAVD 585
>sp|Q90ZC7|KCMA1_XENLA Calcium-activated potassium channel subunit alpha-1 OS=Xenopus
laevis GN=kcnma1 PE=2 SV=1
Length = 1196
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 547 RSFIKIEEDT--WQKYYLEGVANEMYTEYLSSAFVGLSFPAVCE 588
>sp|Q8AYS8|KCMA1_CHICK Calcium-activated potassium channel subunit alpha-1 OS=Gallus
gallus GN=KCNMA1 PE=1 SV=2
Length = 1137
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 538 RSFIKIEEDT--WQKYYLEGVANEMYTEYLSSAFVGLSFPAVCE 579
>sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subunit alpha-1 OS=Oryctolagus
cuniculus GN=KCNMA1 PE=2 SV=1
Length = 1179
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 580 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 621
>sp|Q12791|KCMA1_HUMAN Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens
GN=KCNMA1 PE=1 SV=2
Length = 1236
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 579 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 620
>sp|O18866|KCMA1_PIG Calcium-activated potassium channel subunit alpha-1 (Fragment)
OS=Sus scrofa GN=KCNMA1 PE=2 SV=2
Length = 1152
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 553 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 594
>sp|O18867|KCMA1_MACMU Calcium-activated potassium channel subunit alpha-1 (Fragment)
OS=Macaca mulatta GN=KCNMA1 PE=2 SV=1
Length = 1151
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 552 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 593
>sp|Q28204|KCMA1_BOVIN Calcium-activated potassium channel subunit alpha-1 OS=Bos taurus
GN=KCNMA1 PE=1 SV=2
Length = 1166
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 567 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 608
>sp|Q62976|KCMA1_RAT Calcium-activated potassium channel subunit alpha-1 OS=Rattus
norvegicus GN=Kcnma1 PE=1 SV=3
Length = 1209
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 580 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 621
>sp|Q08460|KCMA1_MOUSE Calcium-activated potassium channel subunit alpha-1 OS=Mus musculus
GN=Kcnma1 PE=1 SV=2
Length = 1209
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 14 RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
R+ I DT WQ YL+G EMYTE LS +F G++FP E
Sbjct: 579 RSFIKIEEDT--WQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 620
>sp|Q28265|KCMA1_CANFA Calcium-activated potassium channel subunit alpha-1 (Fragment)
OS=Canis familiaris GN=KCNMA1 PE=2 SV=2
Length = 1159
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 18 LISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
I + W YL+G EMYTE LS +F G++FP E
Sbjct: 519 FIKIEEDTWHKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 558
>sp|O54982|KCNU1_MOUSE Potassium channel subfamily U member 1 OS=Mus musculus GN=Kcnu1
PE=1 SV=2
Length = 1121
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 26 WQNDYLQGTGCEMYTETLSPSFTGMTFPQAS 56
WQ +L G ++ T+ LS F GMTFPQ S
Sbjct: 513 WQKHFLNGLKNKILTQRLSNDFVGMTFPQVS 543
>sp|A5LFX5|KCNU1_MACFA Potassium channel subfamily U member 1 OS=Macaca fascicularis
GN=KCNU1 PE=2 SV=1
Length = 1149
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 7 QRVKVTPRTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQAS 56
Q KVTP+ Q WQ +L + T+ LS F GM+FP+ +
Sbjct: 503 QNRKVTPK---------QTWQKHFLNSMKNNILTQRLSDDFAGMSFPEVA 543
>sp|A8MYU2|KCNU1_HUMAN Potassium channel subfamily U member 1 OS=Homo sapiens GN=KCNU1
PE=1 SV=2
Length = 1149
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 7 QRVKVTPRTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
Q KV P+ Q W+ +L ++ T+ LS F GM+FP+ +
Sbjct: 503 QNKKVMPK---------QTWKKHFLNSMKNKILTQRLSDDFAGMSFPEVAR 544
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,971,127
Number of Sequences: 539616
Number of extensions: 680336
Number of successful extensions: 1058
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 16
length of query: 57
length of database: 191,569,459
effective HSP length: 30
effective length of query: 27
effective length of database: 175,380,979
effective search space: 4735286433
effective search space used: 4735286433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)