Query psy9372
Match_columns 57
No_of_seqs 48 out of 50
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 17:26:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hpf_A Potassium channel subfa 98.2 2.2E-07 7.5E-12 69.7 0.1 35 22-56 181-215 (722)
2 3mt5_A Potassium large conduct 97.5 1.2E-05 4.1E-10 63.3 -0.5 35 22-56 181-215 (726)
3 3naf_A Calcium-activated potas 97.4 2.1E-05 7.2E-10 62.4 -0.4 35 22-56 231-265 (798)
4 3k7b_A Protein A33; C-type lec 38.5 2.8 9.5E-05 25.9 -1.7 20 15-34 43-62 (96)
5 2p7v_B Sigma-70, RNA polymeras 33.1 6.2 0.00021 20.6 -0.7 13 45-57 21-33 (68)
6 1ny8_A Protein YRBA; structure 29.4 21 0.00073 21.6 1.2 20 33-52 28-47 (97)
7 2kz0_A BOLA family protein; BO 28.7 23 0.0008 20.4 1.3 20 33-52 31-50 (76)
8 1xs3_A Hypothetical protein XC 26.1 19 0.00066 20.8 0.6 20 34-53 30-49 (80)
9 3tr3_A BOLA; cellular processe 25.7 21 0.00071 20.9 0.7 20 33-52 28-47 (82)
10 3ouv_A Serine/threonine protei 23.1 18 0.0006 19.2 0.0 11 45-55 11-21 (71)
11 3hk0_A Growth factor receptor- 22.1 14 0.00049 25.3 -0.6 26 14-39 136-163 (256)
12 4gmv_A RAS-associated and plec 21.9 16 0.00055 25.4 -0.4 24 13-36 161-186 (281)
No 1
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=98.18 E-value=2.2e-07 Score=69.65 Aligned_cols=35 Identities=31% Similarity=0.738 Sum_probs=33.1
Q ss_pred CchhhHHHhhcccccchhhhhcCCccCCCCccccc
Q psy9372 22 DTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQAS 56 (57)
Q Consensus 22 ~~~~Wqk~yL~G~~~emyTe~LS~dF~GMtFpEv~ 56 (57)
.++.|+++|++|.++|+|+..+|+.|+||||.||+
T Consensus 181 ~~~~w~~~Y~~g~~~eiy~~~~~~~~~G~tf~e~~ 215 (722)
T 4hpf_A 181 PKQTWKKHFLNSMKNKILTQRLSDDFAGMSFPEVA 215 (722)
T ss_dssp CSSHHHHHHHHHHTCBCCEEECCGGGTTCBHHHHH
T ss_pred chhhHHHHHhcccCceEEEeeCCcccCCCCHHHHH
Confidence 56789999999999999999999999999999986
No 2
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=97.50 E-value=1.2e-05 Score=63.30 Aligned_cols=35 Identities=46% Similarity=0.933 Sum_probs=33.1
Q ss_pred CchhhHHHhhcccccchhhhhcCCccCCCCccccc
Q psy9372 22 DTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQAS 56 (57)
Q Consensus 22 ~~~~Wqk~yL~G~~~emyTe~LS~dF~GMtFpEv~ 56 (57)
+++.|.+.|++|.++|+|+..+++.|+||||.|++
T Consensus 181 ~~~~wi~EY~~g~g~EiY~v~l~s~~~G~Tf~ea~ 215 (726)
T 3mt5_A 181 EEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVC 215 (726)
T ss_dssp CSSSHHHHHHHHHTCEEEEEECCGGGTTSBHHHHH
T ss_pred chhHHHHHHhccCCceEEEEeCCcccCCCCHHHHH
Confidence 57889999999999999999999999999999985
No 3
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=97.38 E-value=2.1e-05 Score=62.41 Aligned_cols=35 Identities=46% Similarity=0.933 Sum_probs=33.0
Q ss_pred CchhhHHHhhcccccchhhhhcCCccCCCCccccc
Q psy9372 22 DTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQAS 56 (57)
Q Consensus 22 ~~~~Wqk~yL~G~~~emyTe~LS~dF~GMtFpEv~ 56 (57)
+++.|.+.|++|.++|+|+..+++.|+||||.|++
T Consensus 231 ~~~~Wi~eY~~g~g~Eiy~v~l~s~~~G~Tf~ea~ 265 (798)
T 3naf_A 231 EEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVC 265 (798)
T ss_dssp CSCSHHHHHHHHHTBCCEEEECCGGGTTCBHHHHH
T ss_pred chhHHHHHHhcccCcEEEEEeCCcccCCCCHHHHH
Confidence 56889999999999999999999999999999985
No 4
>3k7b_A Protein A33; C-type lectin-like domain, homodimer, poxvirus, EEV, EV, VIR protein; 2.10A {Vaccinia virus WR}
Probab=38.50 E-value=2.8 Score=25.91 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=13.9
Q ss_pred eeEEEcCCchhhHHHhhccc
Q psy9372 15 TLDLISPDTQAWQNDYLQGT 34 (57)
Q Consensus 15 ~~~~~~~~~~~Wqk~yL~G~ 34 (57)
.|..+...+.+|..+||+|+
T Consensus 43 ~Lpsi~s~~~~wL~~YL~gT 62 (96)
T 3k7b_A 43 TLPNKSDVMITWLIDYVEDT 62 (96)
T ss_dssp BCCCHHHHTTSTTHHHHBTS
T ss_pred ccCCcccchhHHHHHHHhcc
Confidence 34444334449999999997
No 5
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.10 E-value=6.2 Score=20.57 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=9.8
Q ss_pred CccCCCCcccccC
Q psy9372 45 PSFTGMTFPQASE 57 (57)
Q Consensus 45 ~dF~GMtFpEv~r 57 (57)
++|.|+|+.|+|+
T Consensus 21 ~~~~g~s~~eIA~ 33 (68)
T 2p7v_B 21 DMNTDYTLEEVGK 33 (68)
T ss_dssp TSSSCCCHHHHHH
T ss_pred CCCCCCCHHHHHH
Confidence 4468999998873
No 6
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=29.44 E-value=21 Score=21.58 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=15.7
Q ss_pred ccccchhhhhcCCccCCCCc
Q psy9372 33 GTGCEMYTETLSPSFTGMTF 52 (57)
Q Consensus 33 G~~~emyTe~LS~dF~GMtF 52 (57)
|.|.-.-..-.|++|.|||.
T Consensus 28 G~gsHf~v~IVS~~F~Gks~ 47 (97)
T 1ny8_A 28 GDGSHFQVIAVGELFDGMSR 47 (97)
T ss_dssp ESSSEEEEEEESSTTSSSCH
T ss_pred cCCceEEEEEEChhhCCCCH
Confidence 66665557788999999985
No 7
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=28.68 E-value=23 Score=20.38 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=15.3
Q ss_pred ccccchhhhhcCCccCCCCc
Q psy9372 33 GTGCEMYTETLSPSFTGMTF 52 (57)
Q Consensus 33 G~~~emyTe~LS~dF~GMtF 52 (57)
|.|.-.-..--|+.|.|+|-
T Consensus 31 G~g~Hf~v~IVS~~F~G~s~ 50 (76)
T 2kz0_A 31 GDNNHYSIKVISSQFQGKSK 50 (76)
T ss_dssp STTSCCEEEEEEGGGTTCCH
T ss_pred CCccEEEEEEEchHhCCCCH
Confidence 66655557788999999984
No 8
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=26.15 E-value=19 Score=20.82 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=14.8
Q ss_pred cccchhhhhcCCccCCCCcc
Q psy9372 34 TGCEMYTETLSPSFTGMTFP 53 (57)
Q Consensus 34 ~~~emyTe~LS~dF~GMtFp 53 (57)
.|.-.-..--|++|.|+|.-
T Consensus 30 ~gsHf~v~IVS~~F~G~~~v 49 (80)
T 1xs3_A 30 DGVHFEATVVSPAFVGKAPL 49 (80)
T ss_dssp TTSCCEEEEECGGGCSSCCH
T ss_pred CCCEEEEEEEchhhCCCcHH
Confidence 55544477889999999853
No 9
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=25.75 E-value=21 Score=20.88 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=15.8
Q ss_pred ccccchhhhhcCCccCCCCc
Q psy9372 33 GTGCEMYTETLSPSFTGMTF 52 (57)
Q Consensus 33 G~~~emyTe~LS~dF~GMtF 52 (57)
|.|.-.-..-.|++|.|||.
T Consensus 28 g~gshf~v~IVS~~F~G~~~ 47 (82)
T 3tr3_A 28 GDGHHFEAVVLCPTFEGQTA 47 (82)
T ss_dssp ECSSEEEEEEECGGGTTCCH
T ss_pred CCCCeEEEEEEchhhCCCCH
Confidence 56666567788999999985
No 10
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=23.09 E-value=18 Score=19.23 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=9.1
Q ss_pred CccCCCCcccc
Q psy9372 45 PSFTGMTFPQA 55 (57)
Q Consensus 45 ~dF~GMtFpEv 55 (57)
+|++|||..||
T Consensus 11 Pdv~G~~~~~A 21 (71)
T 3ouv_A 11 PDVAGQTVDVA 21 (71)
T ss_dssp CCCTTCBHHHH
T ss_pred CCcCCCCHHHH
Confidence 68999998776
No 11
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=22.07 E-value=14 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=20.8
Q ss_pred ceeEEEcCCchhhHHHh--hcccccchh
Q psy9372 14 RTLDLISPDTQAWQNDY--LQGTGCEMY 39 (57)
Q Consensus 14 ~~~~~~~~~~~~Wqk~y--L~G~~~emy 39 (57)
|||..+......|++.| |++.|--.+
T Consensus 136 G~L~~ke~~~K~WkkRyfvLr~sgLy~~ 163 (256)
T 3hk0_A 136 GFLHVKELGKKSWKKLYVCLRRSGLYCS 163 (256)
T ss_dssp EEEEEECTTSSCEEEEEEEEETTEEEEE
T ss_pred eEEEEecCCCCcceEEEEEEeCCEEEEE
Confidence 89998877889999999 787775333
No 12
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=21.94 E-value=16 Score=25.45 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=19.8
Q ss_pred CceeEEEcCCchhhHHHh--hccccc
Q psy9372 13 PRTLDLISPDTQAWQNDY--LQGTGC 36 (57)
Q Consensus 13 ~~~~~~~~~~~~~Wqk~y--L~G~~~ 36 (57)
-|||.++......|++.| |+|.|-
T Consensus 161 ~G~L~~k~~~~k~WkkRyfvLr~sgL 186 (281)
T 4gmv_A 161 EGVLWLKDDGKKSWKKRYFLLRASGI 186 (281)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSSCE
T ss_pred EEEEEEECCCCCCCeEEEEEEeCCEE
Confidence 479988877788999999 777774
Done!