Query psy9372
Match_columns 57
No_of_seqs 48 out of 50
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 17:26:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9372.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9372hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x1ga1 b.55.1.1 (A:8-123) Ple 48.3 1.8 0.00013 22.2 -0.0 38 2-39 3-42 (116)
2 d1v5ua_ b.55.1.1 (A:) SET bind 41.4 1.7 0.00012 22.5 -0.8 27 13-39 11-39 (117)
3 d1or7a1 a.4.13.2 (A:120-187) S 40.8 1.6 0.00012 22.1 -0.9 13 45-57 30-42 (68)
4 d1wgqa_ b.55.1.1 (A:) FYVE, Rh 32.1 2.8 0.0002 21.6 -0.9 27 13-39 11-39 (109)
5 d2fjla1 b.55.1.1 (A:1-37,A:87- 29.7 3.2 0.00024 21.2 -0.9 27 13-39 4-32 (101)
6 d1in1a_ c.15.1.2 (A:) DNA liga 29.5 9.3 0.00068 20.8 1.1 16 37-52 7-22 (88)
7 d1ny8a_ d.52.6.1 (A:) Hypothet 28.6 6.8 0.00049 22.3 0.4 21 32-52 27-47 (97)
8 d1xx6a1 c.37.1.24 (A:2-142) Th 27.7 7.4 0.00054 22.7 0.4 35 22-56 94-128 (141)
9 d1rp3a2 a.4.13.2 (A:164-234) S 23.8 4.7 0.00034 20.0 -0.9 12 46-57 34-45 (71)
10 d7odca1 b.49.2.3 (A:2-43,A:284 22.7 12 0.00088 22.5 0.7 20 36-55 145-164 (177)
11 d1xbta1 c.37.1.24 (A:18-150) T 22.0 13 0.00092 21.2 0.7 27 31-57 95-121 (133)
No 1
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.25 E-value=1.8 Score=22.20 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=28.5
Q ss_pred CcccceeeeecCceeEEEcCCchhhHHHh--hcccccchh
Q psy9372 2 NPIDLQRVKVTPRTLDLISPDTQAWQNDY--LQGTGCEMY 39 (57)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~Wqk~y--L~G~~~emy 39 (57)
+..|+.+.-+--|||--+......|++.| |.+.+.-+|
T Consensus 3 ~~~~~~~~v~k~G~L~K~~~~~k~WkkR~fvL~~~~~~~~ 42 (116)
T d1x1ga1 3 STVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLH 42 (116)
T ss_dssp CCCTTCSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEE
T ss_pred ccccCCCCEEEEEEEEEEcCCCCCCceEEEEEECCCcEEE
Confidence 45677777788899987777788999998 777665443
No 2
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.43 E-value=1.7 Score=22.51 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=20.1
Q ss_pred CceeEEEcCCchhhHHHh--hcccccchh
Q psy9372 13 PRTLDLISPDTQAWQNDY--LQGTGCEMY 39 (57)
Q Consensus 13 ~~~~~~~~~~~~~Wqk~y--L~G~~~emy 39 (57)
-|||.-+......|++.| |++.+..+|
T Consensus 11 eG~L~k~~~~~k~WkkR~fvL~~~~~~L~ 39 (117)
T d1v5ua_ 11 EGILYKKGAFMKPWKARWFVLDKTKHQLR 39 (117)
T ss_dssp EEEEEECCCSSSCCEEEEEEEETTTTEEE
T ss_pred EEEEEEECCCCCCceEEEEEEeCCCCEEE
Confidence 488877767778899999 777665444
No 3
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=40.80 E-value=1.6 Score=22.13 Aligned_cols=13 Identities=8% Similarity=0.483 Sum_probs=10.2
Q ss_pred CccCCCCcccccC
Q psy9372 45 PSFTGMTFPQASE 57 (57)
Q Consensus 45 ~dF~GMtFpEv~r 57 (57)
..|.|||+.|+|+
T Consensus 30 ~~~~~~s~~eIA~ 42 (68)
T d1or7a1 30 RELDGLSYEEIAA 42 (68)
T ss_dssp HHTTCCCHHHHHH
T ss_pred HHHhCCCHHHHHH
Confidence 3588999999874
No 4
>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.08 E-value=2.8 Score=21.64 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=19.4
Q ss_pred CceeEEEcCCchhhHHHh--hcccccchh
Q psy9372 13 PRTLDLISPDTQAWQNDY--LQGTGCEMY 39 (57)
Q Consensus 13 ~~~~~~~~~~~~~Wqk~y--L~G~~~emy 39 (57)
-|||.-+......|++.| |.|...-.|
T Consensus 11 ~G~L~k~~~~~~~W~kr~~vL~~~~L~~~ 39 (109)
T d1wgqa_ 11 SGYLYRSKGSKKPWKHLWFVIKNKVLYTY 39 (109)
T ss_dssp EEEEEEESSTTSCCEEEEEEEETTEEEEE
T ss_pred EEEEEEECCCCCCceEEEEEEeCCEEEEe
Confidence 488888877778899999 666544333
No 5
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.72 E-value=3.2 Score=21.22 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred CceeEEEcCCchhhHHHh--hcccccchh
Q psy9372 13 PRTLDLISPDTQAWQNDY--LQGTGCEMY 39 (57)
Q Consensus 13 ~~~~~~~~~~~~~Wqk~y--L~G~~~emy 39 (57)
-|||-.+.+....|++.| |.+.....|
T Consensus 4 ~G~L~k~~~~~k~W~kR~fvL~~~~L~yy 32 (101)
T d2fjla1 4 NGILYLEDPVNHEWYPHYFVLTSSKIYYS 32 (101)
T ss_dssp EEEEEEEETTTTEEEEEEEEEETTEEEEC
T ss_pred EEEEEEEcCCCCCCeEEEEEEECCEEEEE
Confidence 488888888788899998 766555544
No 6
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.45 E-value=9.3 Score=20.78 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=13.3
Q ss_pred chhhhhcCCccCCCCc
Q psy9372 37 EMYTETLSPSFTGMTF 52 (57)
Q Consensus 37 emyTe~LS~dF~GMtF 52 (57)
.-.++.|++=|.||+|
T Consensus 7 ~~~~k~l~diF~G~~~ 22 (88)
T d1in1a_ 7 LCQTKVLLDIFTGVRL 22 (88)
T ss_dssp TTSTTCCCSSSTTCBC
T ss_pred CccccchhhHhCCeEE
Confidence 3457889999999987
No 7
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=28.59 E-value=6.8 Score=22.29 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=15.7
Q ss_pred cccccchhhhhcCCccCCCCc
Q psy9372 32 QGTGCEMYTETLSPSFTGMTF 52 (57)
Q Consensus 32 ~G~~~emyTe~LS~dF~GMtF 52 (57)
.|.|.-.-..--|++|.|||-
T Consensus 27 ~g~g~hf~i~IvS~~F~g~s~ 47 (97)
T d1ny8a_ 27 SGDGSHFQVIAVGELFDGMSR 47 (97)
T ss_dssp EESSSEEEEEEESSTTSSSCH
T ss_pred eCCCcEEEEEEEcHHhCCCCH
Confidence 355665557788999999973
No 8
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=27.69 E-value=7.4 Score=22.69 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.4
Q ss_pred CchhhHHHhhcccccchhhhhcCCccCCCCccccc
Q psy9372 22 DTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQAS 56 (57)
Q Consensus 22 ~~~~Wqk~yL~G~~~emyTe~LS~dF~GMtFpEv~ 56 (57)
+...|.-.-+.-.|-.++.--|..||.|-.|++++
T Consensus 94 d~~~~~~~~l~~~g~~Viv~GLd~Df~~~~F~~~~ 128 (141)
T d1xx6a1 94 DEIVEIVNKIAESGRRVICAGLDMDFRGKPFGPIP 128 (141)
T ss_dssp THHHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHH
T ss_pred ccHHHHHHhheeCCcEEEEEEeccccccCccchHH
Confidence 44556666677778899999999999999999875
No 9
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=23.80 E-value=4.7 Score=19.96 Aligned_cols=12 Identities=0% Similarity=0.155 Sum_probs=9.3
Q ss_pred ccCCCCcccccC
Q psy9372 46 SFTGMTFPQASE 57 (57)
Q Consensus 46 dF~GMtFpEv~r 57 (57)
.|.|||+.|+|+
T Consensus 34 ~~~~~s~~eIA~ 45 (71)
T d1rp3a2 34 FYEELPAKEVAK 45 (71)
T ss_dssp HTSCCCHHHHHH
T ss_pred HhHhCCHHHHHH
Confidence 478899988873
No 10
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.67 E-value=12 Score=22.49 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=16.5
Q ss_pred cchhhhhcCCccCCCCcccc
Q psy9372 36 CEMYTETLSPSFTGMTFPQA 55 (57)
Q Consensus 36 ~emyTe~LS~dF~GMtFpEv 55 (57)
+--||..+|..|+|.+-|++
T Consensus 145 ~GAYt~~~ss~FNGf~~p~v 164 (177)
T d7odca1 145 MGAYTVAAASTFNGFQRPNI 164 (177)
T ss_dssp CCSSSGGGCCCGGGCCCCEE
T ss_pred CCcchhhcccCCCCCCCCEE
Confidence 34599999999999987765
No 11
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.99 E-value=13 Score=21.17 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=22.9
Q ss_pred hcccccchhhhhcCCccCCCCcccccC
Q psy9372 31 LQGTGCEMYTETLSPSFTGMTFPQASE 57 (57)
Q Consensus 31 L~G~~~emyTe~LS~dF~GMtFpEv~r 57 (57)
+.-.|-.++.--|..||.|-.|+++++
T Consensus 95 ~~~~~~~Viv~GLd~Df~~~~F~~~~~ 121 (133)
T d1xbta1 95 MANAGKTVIVAALDGTFQRKPFGAILN 121 (133)
T ss_dssp HHHTTCEEEEECCSBCTTSSBCTTGGG
T ss_pred HHhcCCcEEEEEeccccccCcchhHHH
Confidence 445678899999999999999998864
Done!