RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9372
         (57 letters)



>gnl|CDD|202668 pfam03493, BK_channel_a, Calcium-activated BK potassium channel
          alpha subunit. 
          Length = 101

 Score = 48.8 bits (117), Expect = 9e-10
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 20 SPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
           P    W  +YL+G+G E+YT  L  +F G++F Q + 
Sbjct: 50 DPSKDNWIKEYLRGSGNEIYTIPLPSAFVGLSFTQVAR 87


>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b
           binding protein Lhca5; Provisional.
          Length = 252

 Score = 24.8 bits (54), Expect = 2.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 12  TPRTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTG 49
           T R +D +SP +QA +  +    G E   E L P + G
Sbjct: 147 TKRYMDFVSPGSQAKEGSFF---GLEAALEGLEPGYPG 181


>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase.
            Members of this family are the enzyme
           glucose-1-phosphate cytidylyltransferase, also called
           CDP-glucose pyrophosphorylase, the product of the rfbF
           gene [Cell envelope, Biosynthesis and degradation of
           surface polysaccharides and lipopolysaccharides].
          Length = 254

 Score = 24.3 bits (53), Expect = 3.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 13  PRTLDLISPDTQAWQNDYLQ 32
           P  LDLI  D   W+ + L+
Sbjct: 192 PSVLDLIDGDATVWEQEPLE 211


>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein.  IVa2 protein can
           interact with the adenoviral packaging signal and that
           this interaction involves DNA sequences that have
           previously been demonstrated to be required for
           packaging. During the course of lytic infection, the
           adenovirus major late promoter (MLP) is induced to high
           levels after replication of viral DNA has started. IVa2
           is a transcriptional activator of the major late
           promoter.
          Length = 370

 Score = 23.5 bits (51), Expect = 6.9
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 11  VTPRTLDLISPDTQ-AW-----QNDYLQGTGCEMY--TETLSPSFTGMTFPQA 55
           +TP   D+I P  Q AW     + +Y  G    +   T T  P F  MT+  A
Sbjct: 123 ITP-QKDMIPPQEQTAWELQLCEGNYSCGPDGTIAPQTGTFRPRFVEMTYEDA 174


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0745    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,842,626
Number of extensions: 177494
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 4
Length of query: 57
Length of database: 10,937,602
Length adjustment: 29
Effective length of query: 28
Effective length of database: 9,651,336
Effective search space: 270237408
Effective search space used: 270237408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)