RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9372
         (57 letters)



>3naf_A Calcium-activated potassium channel subunit alpha; ION channel,
           gating ring, rossman fold, transport, ION trans; 3.10A
           {Homo sapiens}
          Length = 798

 Score = 46.6 bits (109), Expect = 4e-08
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 14  RTLDLISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
                I  +   WQ  YL+G   EMYTE LS +F G++FP   E
Sbjct: 223 SMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 266


>3mt5_A Potassium large conductance calcium-activated CHA subfamily M,
           alpha member 1; potassium channel, membrane protein,
           transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
          Length = 726

 Score = 44.7 bits (104), Expect = 1e-07
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 19  ISPDTQAWQNDYLQGTGCEMYTETLSPSFTGMTFPQASE 57
           I  +   WQ  YL+G   EMYTE LS +F G++FP   E
Sbjct: 178 IKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCE 216


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 0.38
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 7  QRVKVTPRTLDLISPDT 23
          Q +K    +L L + D+
Sbjct: 20 QALKKLQASLKLYADDS 36


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 854,228
Number of extensions: 32518
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 3
Length of query: 57
Length of database: 6,701,793
Length adjustment: 29
Effective length of query: 28
Effective length of database: 5,892,084
Effective search space: 164978352
Effective search space used: 164978352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)