BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9376
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17
          Length = 292

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 145/259 (55%), Gaps = 2/259 (0%)

Query: 29  KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTD 88
           K +EA +   +AA ++++ K+ N AG +F++AA+   K+G + +A    ++A  CFK   
Sbjct: 32  KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91

Query: 89  NEA-AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147
           N   A+D L  AI I+T  G+F   A     + EI E D  D  KA++ YE A  ++  +
Sbjct: 92  NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151

Query: 148 ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHL- 206
           +S + +NKC +K A   AL   Y +A  IY ++ ++S+ + L ++S K+YF +  LC L 
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211

Query: 207 CIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266
             D + A   +   ++  P F DSRE   L+ LI+ + E + +  +E  K++D+  RLD+
Sbjct: 212 ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271

Query: 267 WYTTVLLRIKKQVGRTSLD 285
           W  T+L +IK+ + +   D
Sbjct: 272 WKITILNKIKESIQQQEDD 290


>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio
 pdb|2IFU|B Chain B, Crystal Structure Of A Gamma-Snap From Danio Rerio
 pdb|2IFU|C Chain C, Crystal Structure Of A Gamma-Snap From Danio Rerio
 pdb|2IFU|D Chain D, Crystal Structure Of A Gamma-Snap From Danio Rerio
          Length = 307

 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 3/144 (2%)

Query: 31  DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNE 90
           D A   Y +AA  FK AK+   A  A+++ A  H  + +   AA     A    K     
Sbjct: 33  DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGXXLKDLQRX 92

Query: 91  A-AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149
             A+  + KA V Y + G    AA       ++ E   +D  KAV  Y+QAA  F+ EE 
Sbjct: 93  PEAVQYIEKASVXYVENGTPDTAAXALDRAGKLXEP--LDLSKAVHLYQQAAAVFENEER 150

Query: 150 NSSANKCLLKVAHHAALLQNYNKA 173
              A + + K +      Q +++A
Sbjct: 151 LRQAAELIGKASRLLVRQQKFDEA 174


>pdb|3TA9|A Chain A, Beta-Glucosidase A From The Halothermophile H. Orenii
 pdb|3TA9|B Chain B, Beta-Glucosidase A From The Halothermophile H. Orenii
          Length = 458

 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 134 VEHYEQAATYFKGEESNSSAN-----KCLLKVAHHAALLQNYNKAIQIYEE---VGRTSL 185
           V H E     F+G    + A      K  L+VAHH  LL ++  A+ I+ E    G   +
Sbjct: 169 VTHNEPWVVAFEGHAFGNHAPGTKDFKTALQVAHH--LLLSHGMAVDIFREEDLPGEIGI 226

Query: 186 DSSLLK-YSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIE 244
             +L   Y A +         L  D INA      +K  YP              + HI 
Sbjct: 227 TLNLTPAYPAGDSEKDVKAASLLDDYINAWFLSPVFKGSYPE------------ELHHIY 274

Query: 245 EQNVDGFTEAVKDYDSISR 263
           EQN+  FT    D D ISR
Sbjct: 275 EQNLGAFTTQPGDMDIISR 293


>pdb|1S0U|A Chain A, Eif2gamma Apo
          Length = 408

 Score = 35.4 bits (80), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 126 DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKV-AHHAALLQNYNKAIQIYEEVGRTS 184
           D VD+++A E+YEQ   + KG     + N  ++ + AHH A +    KAIQ +    +  
Sbjct: 146 DLVDEKQAEENYEQIKEFVKG---TIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRD 202

Query: 185 LDSSLLKYSAKEY 197
            D++   Y A+ +
Sbjct: 203 PDATPRMYVARSF 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,772,364
Number of Sequences: 62578
Number of extensions: 323421
Number of successful extensions: 919
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 8
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)