Query psy9376
Match_columns 320
No_of_seqs 286 out of 1544
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 17:31:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1586|consensus 100.0 7.5E-51 1.6E-55 337.3 29.7 279 2-284 3-285 (288)
2 PF14938 SNAP: Soluble NSF att 100.0 1.2E-48 2.5E-53 351.0 28.3 276 2-280 2-282 (282)
3 KOG1586|consensus 100.0 2.2E-29 4.7E-34 209.6 19.7 188 71-319 31-224 (288)
4 KOG1585|consensus 99.9 2.2E-24 4.9E-29 180.8 26.2 245 3-256 5-251 (308)
5 PF14938 SNAP: Soluble NSF att 99.9 1.1E-22 2.4E-27 182.6 20.0 186 69-315 30-218 (282)
6 KOG4626|consensus 99.8 2E-18 4.3E-23 161.4 13.3 215 27-270 231-491 (966)
7 KOG4626|consensus 99.8 5.4E-18 1.2E-22 158.5 11.9 225 27-280 197-467 (966)
8 KOG2003|consensus 99.6 1.1E-14 2.4E-19 132.3 17.6 210 26-263 502-727 (840)
9 TIGR00990 3a0801s09 mitochondr 99.6 7.9E-14 1.7E-18 138.5 22.8 214 27-266 344-573 (615)
10 KOG1840|consensus 99.6 1.6E-12 3.5E-17 123.6 28.3 231 27-263 212-478 (508)
11 TIGR00990 3a0801s09 mitochondr 99.6 2.3E-13 4.9E-18 135.3 23.6 222 28-279 308-552 (615)
12 KOG1126|consensus 99.5 4.7E-14 1E-18 133.6 10.4 205 41-280 428-634 (638)
13 KOG1130|consensus 99.5 4.5E-13 9.8E-18 120.7 15.7 251 26-297 47-325 (639)
14 PRK11788 tetratricopeptide rep 99.5 1.1E-11 2.3E-16 116.2 25.9 209 41-276 114-323 (389)
15 KOG0547|consensus 99.4 1.7E-11 3.8E-16 112.6 20.7 140 116-276 363-503 (606)
16 TIGR02521 type_IV_pilW type IV 99.4 3.1E-11 6.8E-16 103.4 20.0 206 27-263 24-231 (234)
17 KOG1130|consensus 99.4 1.2E-11 2.7E-16 111.6 17.6 224 27-261 68-341 (639)
18 PRK11788 tetratricopeptide rep 99.4 3.5E-11 7.5E-16 112.7 21.7 212 27-263 120-346 (389)
19 KOG1155|consensus 99.4 1.9E-11 4.1E-16 111.8 18.9 124 41-183 337-461 (559)
20 KOG1126|consensus 99.4 2E-12 4.4E-17 122.6 12.4 233 29-293 334-616 (638)
21 TIGR02917 PEP_TPR_lipo putativ 99.4 4.7E-11 1E-15 122.1 23.5 149 27-188 35-227 (899)
22 PRK11447 cellulose synthase su 99.4 4.8E-11 1E-15 126.5 23.9 156 26-188 281-495 (1157)
23 KOG1840|consensus 99.4 3.1E-10 6.6E-15 108.2 25.6 226 33-263 198-437 (508)
24 PRK15174 Vi polysaccharide exp 99.4 7.5E-11 1.6E-15 117.8 22.3 153 88-267 227-384 (656)
25 PRK15174 Vi polysaccharide exp 99.4 1.3E-10 2.9E-15 116.0 23.8 215 27-268 89-351 (656)
26 PRK09782 bacteriophage N4 rece 99.4 6.3E-11 1.4E-15 122.0 20.8 219 28-280 490-722 (987)
27 TIGR02917 PEP_TPR_lipo putativ 99.3 8.6E-11 1.9E-15 120.1 21.1 138 27-183 512-664 (899)
28 PRK11447 cellulose synthase su 99.3 1.8E-10 3.9E-15 122.2 23.9 135 41-188 276-419 (1157)
29 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-10 3E-15 105.0 18.3 200 32-266 62-267 (296)
30 PRK09782 bacteriophage N4 rece 99.3 2.5E-10 5.3E-15 117.6 22.0 209 27-269 522-745 (987)
31 KOG1155|consensus 99.3 9.4E-11 2E-15 107.3 16.8 138 27-183 343-495 (559)
32 KOG2003|consensus 99.3 2.7E-10 5.8E-15 104.1 17.6 197 43-272 499-697 (840)
33 PRK12370 invasion protein regu 99.3 2.1E-10 4.5E-15 112.6 17.9 216 28-277 254-483 (553)
34 TIGR02521 type_IV_pilW type IV 99.3 8.8E-10 1.9E-14 94.3 19.7 142 27-185 44-200 (234)
35 COG3063 PilF Tfp pilus assembl 99.2 1.8E-09 3.9E-14 91.0 19.4 170 28-223 29-202 (250)
36 KOG0547|consensus 99.2 1.3E-09 2.8E-14 100.5 18.4 210 37-272 363-574 (606)
37 PF13429 TPR_15: Tetratricopep 99.2 2E-10 4.3E-15 103.1 12.9 216 27-276 21-255 (280)
38 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-09 3.5E-14 98.0 18.9 126 48-188 40-166 (296)
39 TIGR03302 OM_YfiO outer membra 99.2 1.6E-09 3.5E-14 94.5 16.7 188 29-228 28-234 (235)
40 COG3063 PilF Tfp pilus assembl 99.1 7.1E-09 1.5E-13 87.5 18.0 169 69-262 30-200 (250)
41 TIGR03302 OM_YfiO outer membra 99.1 3.4E-09 7.4E-14 92.4 16.6 151 27-184 46-233 (235)
42 COG2956 Predicted N-acetylgluc 99.1 5.5E-08 1.2E-12 85.9 23.0 245 13-281 32-328 (389)
43 KOG1585|consensus 99.1 4.6E-09 9.9E-14 89.2 15.1 152 29-181 66-217 (308)
44 KOG0548|consensus 99.1 7.6E-08 1.7E-12 90.0 23.9 225 33-281 223-472 (539)
45 PRK12370 invasion protein regu 99.0 2.2E-08 4.8E-13 98.4 20.1 176 27-230 274-474 (553)
46 PRK15359 type III secretion sy 99.0 2.4E-09 5.2E-14 86.4 11.0 112 55-188 14-126 (144)
47 KOG2002|consensus 99.0 8.4E-08 1.8E-12 95.0 23.2 237 26-287 176-432 (1018)
48 KOG1173|consensus 99.0 1.7E-08 3.6E-13 94.8 17.5 223 31-281 310-535 (611)
49 PRK10049 pgaA outer membrane p 99.0 5.2E-08 1.1E-12 99.3 22.4 211 27-265 28-267 (765)
50 PF13429 TPR_15: Tetratricopep 99.0 3.9E-09 8.5E-14 94.7 12.4 204 27-263 57-276 (280)
51 KOG1173|consensus 99.0 1E-08 2.2E-13 96.1 15.4 182 27-230 325-522 (611)
52 PRK10747 putative protoheme IX 99.0 6.1E-08 1.3E-12 91.4 20.7 239 13-281 84-376 (398)
53 KOG2002|consensus 99.0 1.7E-07 3.7E-12 92.9 22.1 215 41-276 349-571 (1018)
54 PF13424 TPR_12: Tetratricopep 98.9 1.7E-08 3.8E-13 72.2 10.3 74 71-145 2-77 (78)
55 PRK15359 type III secretion sy 98.9 1.9E-08 4.2E-13 81.1 11.6 108 39-165 29-137 (144)
56 PF13424 TPR_12: Tetratricopep 98.9 1.7E-08 3.6E-13 72.3 9.9 72 111-183 3-75 (78)
57 PRK10049 pgaA outer membrane p 98.9 2E-07 4.3E-12 95.1 20.9 192 43-264 24-225 (765)
58 KOG1125|consensus 98.9 1.4E-07 3.1E-12 88.9 16.8 199 40-266 291-529 (579)
59 PRK10370 formate-dependent nit 98.8 2.9E-08 6.3E-13 84.4 11.1 142 25-185 27-175 (198)
60 KOG2076|consensus 98.8 1.4E-06 3E-11 86.0 23.2 106 27-145 152-272 (895)
61 PRK14574 hmsH outer membrane p 98.8 4E-07 8.7E-12 92.5 19.9 172 32-233 33-205 (822)
62 PRK10747 putative protoheme IX 98.8 1.1E-06 2.4E-11 82.9 21.0 145 20-183 71-216 (398)
63 TIGR02552 LcrH_SycD type III s 98.8 6.4E-08 1.4E-12 76.7 10.5 115 55-188 4-119 (135)
64 KOG1129|consensus 98.8 8.8E-08 1.9E-12 84.7 11.4 208 38-276 227-436 (478)
65 PRK14574 hmsH outer membrane p 98.8 5E-07 1.1E-11 91.8 18.3 193 72-291 33-225 (822)
66 PF09976 TPR_21: Tetratricopep 98.7 2.3E-06 5E-11 68.9 18.3 137 29-180 7-144 (145)
67 PRK15363 pathogenicity island 98.7 2.3E-07 5E-12 74.7 11.7 97 75-184 37-133 (157)
68 PLN02789 farnesyltranstransfer 98.7 1.6E-06 3.5E-11 79.1 18.4 211 27-267 33-253 (320)
69 CHL00033 ycf3 photosystem I as 98.7 6.7E-07 1.5E-11 73.9 14.3 115 28-146 29-145 (168)
70 PRK14720 transcript cleavage f 98.7 1E-06 2.3E-11 89.1 18.1 261 27-317 27-301 (906)
71 KOG0553|consensus 98.7 1.5E-07 3.3E-12 82.4 10.4 98 37-147 84-182 (304)
72 KOG1174|consensus 98.7 2.8E-06 6.1E-11 77.5 18.6 221 35-273 233-509 (564)
73 PRK15363 pathogenicity island 98.7 4E-07 8.7E-12 73.3 11.8 102 31-145 32-134 (157)
74 PRK04841 transcriptional regul 98.7 2.2E-05 4.8E-10 81.7 28.0 155 27-183 465-641 (903)
75 TIGR00540 hemY_coli hemY prote 98.7 3.2E-06 7E-11 80.0 20.0 233 13-270 84-372 (409)
76 PRK15179 Vi polysaccharide bio 98.6 8.5E-07 1.8E-11 88.6 16.0 136 29-183 81-217 (694)
77 PRK02603 photosystem I assembl 98.6 2.6E-06 5.6E-11 70.7 16.0 91 69-169 30-121 (172)
78 PRK10370 formate-dependent nit 98.6 9E-07 1.9E-11 75.3 13.4 111 28-151 53-181 (198)
79 PF13525 YfiO: Outer membrane 98.6 3.8E-06 8.2E-11 71.8 16.8 145 111-263 3-169 (203)
80 PLN02789 farnesyltranstransfer 98.6 2.1E-05 4.6E-10 71.7 22.6 228 27-279 50-317 (320)
81 PRK15179 Vi polysaccharide bio 98.6 1.5E-06 3.3E-11 86.8 16.1 171 34-229 49-220 (694)
82 COG2956 Predicted N-acetylgluc 98.6 2.7E-05 5.9E-10 69.1 21.7 145 31-188 138-283 (389)
83 TIGR00540 hemY_coli hemY prote 98.6 3.3E-06 7.2E-11 80.0 17.5 222 20-270 71-298 (409)
84 KOG2076|consensus 98.6 1.2E-05 2.7E-10 79.5 21.5 140 27-185 132-272 (895)
85 PLN03088 SGT1, suppressor of 98.6 4.2E-07 9.2E-12 84.4 11.1 92 42-146 10-102 (356)
86 KOG0553|consensus 98.6 3.4E-07 7.3E-12 80.3 9.6 104 73-189 80-184 (304)
87 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.1E-06 2.4E-11 67.4 11.7 108 75-189 3-111 (119)
88 cd05804 StaR_like StaR_like; a 98.6 3.9E-06 8.5E-11 77.6 17.2 200 41-266 13-217 (355)
89 PF13414 TPR_11: TPR repeat; P 98.6 3.6E-07 7.8E-12 63.6 7.9 65 113-184 3-68 (69)
90 CHL00033 ycf3 photosystem I as 98.5 2.6E-06 5.7E-11 70.4 13.8 109 69-181 30-140 (168)
91 KOG0548|consensus 98.5 7.2E-05 1.6E-09 70.5 24.1 191 27-233 237-462 (539)
92 PF12895 Apc3: Anaphase-promot 98.5 1.2E-06 2.6E-11 63.6 10.0 81 88-180 4-84 (84)
93 PRK02603 photosystem I assembl 98.5 3E-06 6.6E-11 70.3 13.5 106 28-144 30-143 (172)
94 KOG0624|consensus 98.5 1.2E-05 2.5E-10 72.0 17.6 206 45-272 166-378 (504)
95 KOG1941|consensus 98.5 1E-05 2.2E-10 72.8 17.4 155 28-183 136-320 (518)
96 cd00189 TPR Tetratricopeptide 98.5 6E-07 1.3E-11 64.6 8.0 94 77-183 3-97 (100)
97 PRK10803 tol-pal system protei 98.5 2.5E-06 5.4E-11 75.6 13.3 107 76-189 145-252 (263)
98 KOG1125|consensus 98.5 6.5E-07 1.4E-11 84.5 9.9 122 41-175 437-563 (579)
99 TIGR02552 LcrH_SycD type III s 98.5 1.8E-06 3.8E-11 68.3 11.1 101 35-148 18-119 (135)
100 cd05804 StaR_like StaR_like; a 98.5 2.6E-06 5.7E-11 78.7 13.6 102 73-183 113-215 (355)
101 PLN03088 SGT1, suppressor of 98.5 1.8E-06 3.9E-11 80.2 11.9 101 77-190 6-106 (356)
102 PRK10866 outer membrane biogen 98.4 4.3E-05 9.2E-10 67.1 19.4 175 75-257 34-237 (243)
103 PRK10866 outer membrane biogen 98.4 3.1E-05 6.6E-10 68.0 18.4 145 27-178 45-236 (243)
104 KOG1129|consensus 98.4 1.1E-06 2.4E-11 77.9 8.9 207 39-274 261-468 (478)
105 PRK04841 transcriptional regul 98.4 0.0006 1.3E-08 71.0 30.5 155 27-183 422-602 (903)
106 PF13432 TPR_16: Tetratricopep 98.4 1.4E-06 3E-11 59.9 7.5 63 118-187 2-64 (65)
107 PF13414 TPR_11: TPR repeat; P 98.4 4.7E-07 1E-11 63.0 5.1 65 74-145 3-69 (69)
108 KOG1941|consensus 98.4 5.9E-06 1.3E-10 74.3 12.9 143 40-183 128-275 (518)
109 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.9E-06 8.4E-11 64.4 10.5 105 36-147 4-109 (119)
110 PRK10803 tol-pal system protei 98.4 4.3E-06 9.4E-11 74.1 11.9 109 33-148 142-251 (263)
111 PF12688 TPR_5: Tetratrico pep 98.4 1.5E-05 3.3E-10 61.8 13.0 69 114-186 2-70 (120)
112 KOG3060|consensus 98.3 2.7E-05 5.9E-10 66.9 15.1 141 27-185 65-222 (289)
113 PF13525 YfiO: Outer membrane 98.3 0.00014 3.1E-09 62.0 19.9 150 33-189 5-176 (203)
114 PLN03077 Protein ECB2; Provisi 98.3 0.00018 3.9E-09 74.6 23.8 158 121-302 532-706 (857)
115 PLN03081 pentatricopeptide (PP 98.3 0.00015 3.3E-09 73.4 22.7 246 27-306 272-547 (697)
116 KOG4234|consensus 98.3 1.6E-05 3.5E-10 66.0 12.6 127 2-147 71-201 (271)
117 KOG0624|consensus 98.3 0.00014 3.1E-09 65.2 18.7 227 18-272 23-260 (504)
118 KOG0550|consensus 98.3 7.1E-06 1.5E-10 74.9 10.7 160 14-184 171-351 (486)
119 PF12688 TPR_5: Tetratrico pep 98.3 6.5E-05 1.4E-09 58.3 14.6 100 76-182 3-103 (120)
120 cd00189 TPR Tetratricopeptide 98.3 3.1E-06 6.7E-11 60.7 6.8 96 37-145 3-99 (100)
121 KOG0543|consensus 98.3 2.1E-05 4.5E-10 72.0 13.3 134 37-183 211-355 (397)
122 KOG1156|consensus 98.3 0.00011 2.5E-09 70.6 18.7 204 41-274 48-258 (700)
123 PLN03218 maturation of RBCL 1; 98.3 0.00011 2.4E-09 76.9 20.5 130 115-263 651-782 (1060)
124 PF12895 Apc3: Anaphase-promot 98.3 4.9E-06 1.1E-10 60.3 7.5 82 47-140 2-84 (84)
125 PLN03218 maturation of RBCL 1; 98.2 0.00024 5.3E-09 74.5 22.4 210 27-263 450-677 (1060)
126 PF04190 DUF410: Protein of un 98.2 0.0021 4.5E-08 57.1 25.0 223 27-281 3-240 (260)
127 KOG1127|consensus 98.2 8.7E-05 1.9E-09 74.4 17.6 162 41-228 499-661 (1238)
128 PF09976 TPR_21: Tetratricopep 98.2 0.00015 3.2E-09 58.4 15.5 102 72-180 10-111 (145)
129 PLN03081 pentatricopeptide (PP 98.1 6.8E-05 1.5E-09 76.0 15.6 137 26-182 302-454 (697)
130 PRK10153 DNA-binding transcrip 98.1 0.00014 3E-09 70.8 15.8 143 28-189 334-488 (517)
131 PRK14720 transcript cleavage f 98.1 0.00022 4.8E-09 72.6 17.7 86 154-267 223-309 (906)
132 KOG4162|consensus 98.1 9.7E-05 2.1E-09 72.3 14.4 146 30-194 646-794 (799)
133 COG1729 Uncharacterized protei 98.1 4.3E-05 9.4E-10 66.7 10.6 107 76-189 144-250 (262)
134 KOG0550|consensus 98.0 0.0003 6.6E-09 64.5 15.7 169 42-228 177-352 (486)
135 PF13512 TPR_18: Tetratricopep 98.0 8.3E-05 1.8E-09 59.0 10.5 112 113-232 10-134 (142)
136 KOG1127|consensus 98.0 0.00049 1.1E-08 69.3 17.4 219 29-271 414-632 (1238)
137 KOG1128|consensus 98.0 0.00015 3.2E-09 70.7 13.2 83 94-188 471-553 (777)
138 KOG3616|consensus 98.0 0.00021 4.5E-09 69.8 14.1 45 138-182 749-793 (1636)
139 PF12569 NARP1: NMDA receptor- 98.0 0.011 2.4E-07 57.5 26.1 255 27-319 17-331 (517)
140 PLN03077 Protein ECB2; Provisi 98.0 0.002 4.4E-08 66.9 22.6 161 77-262 557-718 (857)
141 KOG1156|consensus 97.9 0.001 2.2E-08 64.2 18.2 201 33-260 7-210 (700)
142 KOG3060|consensus 97.9 0.0068 1.5E-07 52.5 21.4 51 128-184 134-184 (289)
143 KOG4555|consensus 97.9 0.00054 1.2E-08 53.3 13.3 95 81-184 50-145 (175)
144 KOG1128|consensus 97.9 0.00055 1.2E-08 66.8 16.5 156 43-225 459-615 (777)
145 PF13432 TPR_16: Tetratricopep 97.9 9.9E-06 2.2E-10 55.5 3.5 60 80-146 3-63 (65)
146 KOG4555|consensus 97.9 0.00035 7.7E-09 54.3 12.2 102 33-143 42-144 (175)
147 KOG3617|consensus 97.9 0.0052 1.1E-07 61.1 22.5 157 26-183 838-1051(1416)
148 COG5010 TadD Flp pilus assembl 97.9 0.00018 3.9E-09 62.2 11.2 126 41-185 73-199 (257)
149 KOG0495|consensus 97.8 0.0015 3.2E-08 63.3 17.5 121 48-188 632-753 (913)
150 PRK15331 chaperone protein Sic 97.8 0.00044 9.5E-09 56.2 12.1 129 1-142 1-133 (165)
151 KOG1174|consensus 97.8 0.0046 1E-07 57.0 19.7 257 27-313 190-484 (564)
152 PRK15331 chaperone protein Sic 97.8 0.00023 5.1E-09 57.7 10.1 96 75-183 39-134 (165)
153 COG5010 TadD Flp pilus assembl 97.8 0.00019 4.2E-09 62.0 10.1 112 45-175 111-223 (257)
154 KOG0543|consensus 97.8 0.001 2.2E-08 61.1 15.0 110 73-189 207-326 (397)
155 PF13371 TPR_9: Tetratricopept 97.8 9.9E-05 2.1E-09 51.7 6.7 63 120-189 2-64 (73)
156 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0005 1.1E-08 64.3 12.8 117 42-180 177-294 (395)
157 PF14559 TPR_19: Tetratricopep 97.8 8.2E-05 1.8E-09 51.3 5.9 55 128-188 5-59 (68)
158 COG4105 ComL DNA uptake lipopr 97.7 0.0034 7.4E-08 54.5 16.5 112 112-231 33-150 (254)
159 KOG4162|consensus 97.7 0.0042 9E-08 61.2 18.8 203 34-263 323-541 (799)
160 KOG3617|consensus 97.7 0.0073 1.6E-07 60.1 20.1 220 14-263 911-1173(1416)
161 PF09986 DUF2225: Uncharacteri 97.7 0.0013 2.7E-08 56.6 13.0 95 88-183 92-194 (214)
162 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00032 6.9E-09 65.7 8.9 68 112-183 74-141 (453)
163 PF12569 NARP1: NMDA receptor- 97.6 0.0049 1.1E-07 59.9 16.8 147 37-200 197-351 (517)
164 COG4783 Putative Zn-dependent 97.5 0.0015 3.2E-08 61.3 12.0 117 46-181 318-435 (484)
165 PF13512 TPR_18: Tetratricopep 97.4 0.0036 7.8E-08 49.7 11.5 109 74-189 11-134 (142)
166 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00046 1E-08 64.6 7.1 66 74-143 75-141 (453)
167 PF12862 Apc5: Anaphase-promot 97.4 0.0051 1.1E-07 45.5 11.4 83 81-164 6-91 (94)
168 PF13176 TPR_7: Tetratricopept 97.3 0.00045 9.7E-09 41.4 4.4 33 115-148 1-33 (36)
169 PF10345 Cohesin_load: Cohesin 97.3 0.21 4.5E-06 50.0 30.7 166 13-182 40-207 (608)
170 PF00515 TPR_1: Tetratricopept 97.3 0.00051 1.1E-08 40.3 4.5 33 113-146 1-33 (34)
171 COG1729 Uncharacterized protei 97.3 0.003 6.4E-08 55.4 10.7 111 116-236 144-254 (262)
172 PF10602 RPN7: 26S proteasome 97.3 0.039 8.5E-07 45.9 17.0 153 132-307 14-168 (177)
173 PF13371 TPR_9: Tetratricopept 97.3 0.00091 2E-08 46.7 5.9 59 82-147 3-62 (73)
174 PF14559 TPR_19: Tetratricopep 97.3 0.00056 1.2E-08 47.0 4.8 54 87-147 5-58 (68)
175 PF07719 TPR_2: Tetratricopept 97.2 0.00077 1.7E-08 39.4 4.6 33 113-146 1-33 (34)
176 KOG4642|consensus 97.2 0.00079 1.7E-08 57.6 5.8 109 27-148 3-112 (284)
177 KOG2376|consensus 97.2 0.034 7.4E-07 53.5 17.1 96 78-184 84-205 (652)
178 KOG4234|consensus 97.2 0.0061 1.3E-07 51.1 10.6 101 80-188 101-202 (271)
179 PRK11906 transcriptional regul 97.2 0.0028 6.1E-08 59.6 9.7 119 49-186 273-404 (458)
180 PF04184 ST7: ST7 protein; In 97.2 0.038 8.3E-07 52.4 16.9 186 78-279 173-390 (539)
181 PF04733 Coatomer_E: Coatomer 97.1 0.0078 1.7E-07 54.3 11.5 160 39-227 107-269 (290)
182 KOG4340|consensus 97.1 0.009 1.9E-07 53.0 11.3 166 88-307 25-191 (459)
183 KOG2300|consensus 97.1 0.25 5.4E-06 46.8 21.0 206 73-307 6-224 (629)
184 PF11817 Foie-gras_1: Foie gra 97.1 0.014 3.1E-07 51.3 12.7 91 89-180 154-244 (247)
185 COG4235 Cytochrome c biogenesi 97.1 0.0046 9.9E-08 54.8 9.4 108 66-185 148-258 (287)
186 COG4783 Putative Zn-dependent 97.0 0.012 2.6E-07 55.3 12.4 106 71-189 304-409 (484)
187 COG0457 NrfG FOG: TPR repeat [ 97.0 0.05 1.1E-06 44.7 15.3 135 37-185 98-233 (291)
188 KOG3785|consensus 97.0 0.2 4.2E-06 45.8 19.0 139 27-179 35-210 (557)
189 PF12862 Apc5: Anaphase-promot 96.9 0.02 4.4E-07 42.3 10.9 78 47-124 11-92 (94)
190 PF10602 RPN7: 26S proteasome 96.9 0.18 3.9E-06 42.0 17.8 128 54-185 16-144 (177)
191 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.0085 1.9E-07 56.1 10.7 99 27-138 182-292 (395)
192 PF00515 TPR_1: Tetratricopept 96.9 0.0028 6E-08 37.1 4.8 33 154-186 1-33 (34)
193 COG4700 Uncharacterized protei 96.9 0.088 1.9E-06 43.8 14.6 89 82-184 64-154 (251)
194 COG4235 Cytochrome c biogenesi 96.9 0.01 2.2E-07 52.7 9.9 102 40-154 162-267 (287)
195 COG0457 NrfG FOG: TPR repeat [ 96.9 0.19 4.2E-06 41.1 19.6 202 38-267 63-268 (291)
196 PF07719 TPR_2: Tetratricopept 96.8 0.0031 6.8E-08 36.7 4.7 32 155-186 2-33 (34)
197 PF13176 TPR_7: Tetratricopept 96.8 0.0027 5.9E-08 37.9 4.4 28 156-183 1-28 (36)
198 COG4105 ComL DNA uptake lipopr 96.8 0.16 3.6E-06 44.3 17.0 153 27-186 47-236 (254)
199 PF13181 TPR_8: Tetratricopept 96.8 0.0034 7.3E-08 36.6 4.7 32 113-145 1-32 (34)
200 PF04733 Coatomer_E: Coatomer 96.8 0.006 1.3E-07 55.0 8.5 138 115-275 104-241 (290)
201 KOG0495|consensus 96.8 0.19 4E-06 49.4 18.6 187 42-263 524-713 (913)
202 PF09986 DUF2225: Uncharacteri 96.8 0.055 1.2E-06 46.5 13.7 99 48-147 91-198 (214)
203 PF13428 TPR_14: Tetratricopep 96.7 0.0042 9.2E-08 38.9 4.8 42 114-162 2-43 (44)
204 PF13431 TPR_17: Tetratricopep 96.7 0.00067 1.5E-08 40.1 1.0 34 95-135 1-34 (34)
205 PF13431 TPR_17: Tetratricopep 96.7 0.002 4.3E-08 38.0 2.9 34 136-175 1-34 (34)
206 KOG3024|consensus 96.6 0.45 9.7E-06 42.1 23.9 242 27-289 19-290 (312)
207 KOG1463|consensus 96.6 0.57 1.2E-05 42.6 21.7 227 41-276 55-328 (411)
208 COG3071 HemY Uncharacterized e 96.5 0.66 1.4E-05 42.9 22.0 87 157-264 266-357 (400)
209 KOG2047|consensus 96.5 0.68 1.5E-05 45.5 20.1 221 27-263 360-614 (835)
210 PRK10153 DNA-binding transcrip 96.5 0.069 1.5E-06 52.1 14.0 133 88-240 357-496 (517)
211 PF10300 DUF3808: Protein of u 96.4 0.11 2.3E-06 50.2 14.4 143 27-183 201-376 (468)
212 COG3071 HemY Uncharacterized e 96.4 0.12 2.7E-06 47.5 13.8 121 41-183 270-390 (400)
213 KOG2376|consensus 96.4 0.13 2.8E-06 49.8 14.3 69 114-183 176-253 (652)
214 KOG3785|consensus 96.4 0.18 3.8E-06 46.1 14.3 147 86-266 35-182 (557)
215 PF13181 TPR_8: Tetratricopept 96.3 0.012 2.5E-07 34.3 4.7 31 155-185 2-32 (34)
216 COG4700 Uncharacterized protei 96.3 0.18 3.8E-06 42.1 13.0 129 42-187 64-193 (251)
217 KOG3081|consensus 96.3 0.7 1.5E-05 40.6 17.2 129 38-188 112-241 (299)
218 KOG0551|consensus 96.2 0.031 6.8E-07 50.3 8.9 110 28-146 75-185 (390)
219 KOG1538|consensus 96.2 0.5 1.1E-05 46.4 17.4 158 88-284 685-848 (1081)
220 PF13174 TPR_6: Tetratricopept 96.2 0.0089 1.9E-07 34.4 3.8 32 155-186 1-32 (33)
221 KOG3616|consensus 96.2 0.33 7.2E-06 48.3 16.1 119 35-154 662-811 (1636)
222 KOG1070|consensus 96.2 0.46 1E-05 50.5 17.9 204 30-263 1455-1662(1710)
223 KOG1550|consensus 96.1 0.43 9.4E-06 47.1 17.3 148 50-226 228-393 (552)
224 KOG2796|consensus 96.1 0.88 1.9E-05 40.1 18.7 133 81-226 184-318 (366)
225 PF06552 TOM20_plant: Plant sp 96.1 0.033 7.1E-07 46.0 7.8 51 89-145 51-104 (186)
226 KOG4340|consensus 96.1 0.13 2.9E-06 45.8 12.0 135 41-184 51-208 (459)
227 KOG0545|consensus 96.0 0.07 1.5E-06 46.2 9.7 110 31-147 175-297 (329)
228 PF03704 BTAD: Bacterial trans 96.0 0.074 1.6E-06 42.4 9.6 64 76-146 64-128 (146)
229 KOG4648|consensus 96.0 0.014 3E-07 52.7 5.6 96 39-147 102-198 (536)
230 PF03704 BTAD: Bacterial trans 96.0 0.46 9.9E-06 37.8 14.1 61 115-182 64-124 (146)
231 PF13428 TPR_14: Tetratricopep 95.9 0.019 4.1E-07 35.8 4.5 35 155-189 2-36 (44)
232 PF13374 TPR_10: Tetratricopep 95.9 0.023 4.9E-07 34.5 4.8 34 113-147 2-35 (42)
233 KOG1915|consensus 95.9 1.7 3.8E-05 41.3 19.8 117 47-183 86-203 (677)
234 PF10300 DUF3808: Protein of u 95.8 0.27 5.9E-06 47.5 14.1 146 47-208 201-353 (468)
235 KOG2300|consensus 95.8 1.9 4.1E-05 41.1 27.5 190 13-207 28-223 (629)
236 PF12968 DUF3856: Domain of Un 95.8 0.65 1.4E-05 35.7 13.3 109 73-182 6-128 (144)
237 KOG1070|consensus 95.7 2.9 6.3E-05 44.8 21.3 122 48-187 1511-1633(1710)
238 PF13174 TPR_6: Tetratricopept 95.7 0.02 4.3E-07 32.8 3.6 31 115-146 2-32 (33)
239 COG5159 RPN6 26S proteasome re 95.6 1.6 3.4E-05 38.9 20.9 227 41-276 52-326 (421)
240 PF10345 Cohesin_load: Cohesin 95.5 3.1 6.7E-05 41.7 24.4 196 51-261 8-205 (608)
241 KOG4648|consensus 95.5 0.053 1.1E-06 49.1 7.2 99 77-188 100-199 (536)
242 COG0790 FOG: TPR repeat, SEL1 95.4 0.89 1.9E-05 40.7 15.2 138 27-185 54-222 (292)
243 PF11817 Foie-gras_1: Foie gra 95.4 0.45 9.8E-06 41.8 12.8 92 48-140 152-244 (247)
244 PF12968 DUF3856: Domain of Un 95.3 0.9 2E-05 35.0 12.2 101 45-146 20-132 (144)
245 PRK11906 transcriptional regul 95.3 0.49 1.1E-05 44.8 13.2 152 88-263 273-435 (458)
246 COG2976 Uncharacterized protei 95.2 1.6 3.5E-05 36.6 15.7 119 104-236 80-198 (207)
247 KOG2047|consensus 95.2 2.9 6.3E-05 41.3 18.2 207 47-266 360-581 (835)
248 KOG4642|consensus 95.2 0.48 1E-05 41.0 11.6 92 81-185 17-109 (284)
249 COG0790 FOG: TPR repeat, SEL1 95.1 2.2 4.8E-05 38.1 16.8 135 27-183 90-266 (292)
250 KOG1915|consensus 95.0 2.9 6.2E-05 39.9 17.0 147 27-189 335-507 (677)
251 KOG1464|consensus 95.0 2.5 5.4E-05 37.5 16.5 150 121-279 199-354 (440)
252 PF11207 DUF2989: Protein of u 94.8 0.71 1.5E-05 39.0 11.7 60 111-174 139-198 (203)
253 PF08631 SPO22: Meiosis protei 94.7 3 6.5E-05 37.2 16.7 100 87-188 7-121 (278)
254 PF04184 ST7: ST7 protein; In 94.7 1.1 2.4E-05 42.8 13.7 123 47-182 181-323 (539)
255 PF06552 TOM20_plant: Plant sp 94.6 0.21 4.4E-06 41.4 7.6 54 129-188 50-114 (186)
256 KOG2796|consensus 94.5 3.2 6.9E-05 36.7 17.0 138 114-267 178-318 (366)
257 KOG0551|consensus 94.5 0.57 1.2E-05 42.4 10.8 125 48-182 56-181 (390)
258 PF13374 TPR_10: Tetratricopep 94.4 0.11 2.4E-06 31.3 4.7 30 154-183 2-31 (42)
259 KOG1550|consensus 94.4 5.9 0.00013 39.2 19.9 120 44-183 259-393 (552)
260 COG2976 Uncharacterized protei 94.3 2.8 6.2E-05 35.2 16.7 100 74-184 89-189 (207)
261 smart00028 TPR Tetratricopepti 94.3 0.063 1.4E-06 29.5 3.1 31 114-145 2-32 (34)
262 KOG2610|consensus 94.3 0.57 1.2E-05 42.6 10.3 86 88-182 190-275 (491)
263 COG4785 NlpI Lipoprotein NlpI, 94.2 3.3 7.1E-05 35.6 16.6 75 108-189 60-134 (297)
264 KOG4814|consensus 94.1 0.34 7.4E-06 47.4 9.1 73 116-190 358-430 (872)
265 PF05843 Suf: Suppressor of fo 93.7 1.4 3.1E-05 39.4 12.2 129 42-186 9-139 (280)
266 KOG3081|consensus 93.5 2.7 5.9E-05 37.1 12.9 141 27-188 121-276 (299)
267 KOG2041|consensus 93.5 9 0.0002 38.4 19.4 109 21-139 743-877 (1189)
268 KOG0545|consensus 93.5 1.8 3.9E-05 37.8 11.6 118 111-236 176-308 (329)
269 COG4785 NlpI Lipoprotein NlpI, 93.4 1.1 2.5E-05 38.3 10.1 72 31-108 62-134 (297)
270 KOG1308|consensus 93.3 0.051 1.1E-06 49.2 2.1 120 42-174 122-242 (377)
271 KOG2581|consensus 93.3 7.2 0.00016 36.5 23.1 236 47-302 139-389 (493)
272 KOG2053|consensus 93.3 3.6 7.7E-05 42.1 14.8 105 58-178 30-138 (932)
273 PF13281 DUF4071: Domain of un 92.9 1.2 2.6E-05 41.5 10.4 124 47-183 195-334 (374)
274 PF13281 DUF4071: Domain of un 92.8 8.3 0.00018 36.0 18.2 187 63-266 129-336 (374)
275 PF05843 Suf: Suppressor of fo 92.7 2.2 4.8E-05 38.2 11.9 83 88-183 16-99 (280)
276 PF08626 TRAPPC9-Trs120: Trans 92.7 4.5 9.8E-05 43.9 15.9 147 37-184 245-475 (1185)
277 smart00028 TPR Tetratricopepti 92.2 0.28 6E-06 26.6 3.7 30 155-184 2-31 (34)
278 PF12739 TRAPPC-Trs85: ER-Golg 92.2 8.9 0.00019 36.5 15.8 108 35-143 209-329 (414)
279 PF10516 SHNi-TPR: SHNi-TPR; 92.2 0.27 5.9E-06 29.6 3.6 33 113-146 1-33 (38)
280 PF04190 DUF410: Protein of un 92.0 8.4 0.00018 34.1 18.4 113 47-180 3-116 (260)
281 KOG1464|consensus 91.7 1.9 4.2E-05 38.1 9.6 151 27-183 23-174 (440)
282 KOG2041|consensus 91.6 14 0.00031 37.1 16.2 26 155-180 853-878 (1189)
283 KOG4507|consensus 91.4 0.39 8.5E-06 46.6 5.5 98 81-190 613-712 (886)
284 cd02681 MIT_calpain7_1 MIT: do 91.3 2.1 4.6E-05 30.2 7.9 31 115-146 8-38 (76)
285 COG4976 Predicted methyltransf 91.2 0.21 4.6E-06 42.9 3.2 54 128-187 9-62 (287)
286 KOG4322|consensus 91.2 14 0.00029 35.0 16.4 122 21-144 261-383 (482)
287 KOG0686|consensus 90.8 14 0.00031 34.6 17.3 173 96-276 133-316 (466)
288 PF02259 FAT: FAT domain; Int 90.6 13 0.00029 33.8 15.6 126 31-165 143-303 (352)
289 KOG0376|consensus 90.5 0.32 6.9E-06 46.0 4.0 96 40-148 10-106 (476)
290 PF12739 TRAPPC-Trs85: ER-Golg 89.3 20 0.00044 34.0 18.4 156 28-184 222-400 (414)
291 PF14853 Fis1_TPR_C: Fis1 C-te 89.2 1.1 2.4E-05 29.2 4.7 35 155-189 2-36 (53)
292 PF10516 SHNi-TPR: SHNi-TPR; 88.9 1 2.2E-05 27.1 4.0 33 35-67 2-34 (38)
293 KOG1538|consensus 88.4 5.7 0.00012 39.4 10.7 29 155-183 805-833 (1081)
294 KOG4507|consensus 88.4 0.52 1.1E-05 45.8 3.7 123 13-147 570-709 (886)
295 KOG2053|consensus 88.2 4.4 9.4E-05 41.5 10.1 86 94-189 27-112 (932)
296 KOG2471|consensus 88.0 1.7 3.6E-05 41.6 6.7 92 27-124 253-380 (696)
297 KOG0376|consensus 87.9 0.6 1.3E-05 44.2 3.8 89 88-189 19-107 (476)
298 KOG2471|consensus 87.7 1.3 2.8E-05 42.3 5.9 116 42-165 248-380 (696)
299 PRK13184 pknD serine/threonine 87.6 1.3 2.8E-05 46.2 6.3 104 42-149 483-587 (932)
300 PF02259 FAT: FAT domain; Int 87.3 23 0.00049 32.2 20.7 72 109-183 142-213 (352)
301 PF10373 EST1_DNA_bind: Est1 D 86.7 1.2 2.6E-05 39.3 5.0 62 92-166 1-62 (278)
302 PF04212 MIT: MIT (microtubule 86.4 2.2 4.8E-05 29.2 5.2 31 115-146 7-37 (69)
303 PF04053 Coatomer_WDAD: Coatom 86.3 32 0.0007 33.0 14.7 42 138-183 335-376 (443)
304 PF07721 TPR_4: Tetratricopept 85.9 1.3 2.8E-05 24.0 3.0 23 156-178 3-25 (26)
305 PRK13184 pknD serine/threonine 85.8 4.8 0.0001 42.2 9.3 95 160-263 481-580 (932)
306 KOG0687|consensus 85.7 28 0.00061 31.8 12.9 130 89-229 80-213 (393)
307 PF10579 Rapsyn_N: Rapsyn N-te 85.6 8.5 0.00018 27.3 7.7 63 113-180 6-69 (80)
308 KOG2581|consensus 85.2 34 0.00074 32.2 16.0 128 41-172 176-305 (493)
309 cd02680 MIT_calpain7_2 MIT: do 84.7 11 0.00025 26.4 9.1 37 29-66 2-38 (75)
310 KOG1308|consensus 84.5 0.44 9.5E-06 43.3 1.0 97 80-189 121-217 (377)
311 PRK10941 hypothetical protein; 84.3 7.8 0.00017 34.5 8.9 77 107-190 175-251 (269)
312 KOG3824|consensus 84.2 1.4 3.1E-05 39.6 4.1 73 29-108 112-185 (472)
313 cd02680 MIT_calpain7_2 MIT: do 84.0 7.5 0.00016 27.3 6.9 25 128-152 20-44 (75)
314 cd02683 MIT_1 MIT: domain cont 83.9 9.4 0.0002 26.9 7.5 31 115-146 8-38 (77)
315 KOG2114|consensus 83.8 24 0.00053 36.1 12.7 34 31-64 365-398 (933)
316 KOG4814|consensus 83.7 50 0.0011 33.0 19.3 102 37-146 358-460 (872)
317 cd02682 MIT_AAA_Arch MIT: doma 82.6 10 0.00023 26.6 7.1 33 113-146 6-38 (75)
318 PF07721 TPR_4: Tetratricopept 82.5 1.9 4E-05 23.3 2.7 25 114-139 2-26 (26)
319 PF11207 DUF2989: Protein of u 82.3 5.1 0.00011 33.9 6.5 59 73-134 140-198 (203)
320 cd02684 MIT_2 MIT: domain cont 81.7 14 0.0003 25.9 7.6 36 29-65 2-37 (75)
321 smart00745 MIT Microtubule Int 81.6 14 0.0003 25.7 7.7 37 28-65 3-39 (77)
322 KOG1839|consensus 81.3 37 0.0008 36.6 13.4 149 31-182 930-1085(1236)
323 KOG3364|consensus 80.0 28 0.00061 27.6 9.4 72 114-189 33-106 (149)
324 KOG0687|consensus 79.5 50 0.0011 30.2 15.8 137 50-190 80-217 (393)
325 PF04781 DUF627: Protein of un 79.5 25 0.00054 26.7 9.9 46 91-143 62-107 (111)
326 PF08631 SPO22: Meiosis protei 79.5 45 0.00098 29.7 17.2 131 47-183 6-150 (278)
327 PF04212 MIT: MIT (microtubule 79.2 7.5 0.00016 26.5 5.6 34 31-65 3-36 (69)
328 KOG1839|consensus 79.2 25 0.00054 37.8 11.5 152 29-181 968-1126(1236)
329 KOG3824|consensus 79.1 5.9 0.00013 35.8 6.1 66 115-188 119-184 (472)
330 PF14561 TPR_20: Tetratricopep 78.6 8.9 0.00019 27.9 6.0 76 93-179 8-83 (90)
331 smart00745 MIT Microtubule Int 78.5 7 0.00015 27.3 5.4 30 116-146 11-40 (77)
332 KOG3024|consensus 78.0 24 0.00053 31.5 9.4 123 15-139 27-152 (312)
333 COG3898 Uncharacterized membra 77.9 63 0.0014 30.5 18.3 143 27-183 133-292 (531)
334 cd02678 MIT_VPS4 MIT: domain c 77.8 21 0.00045 24.9 8.3 30 116-146 9-38 (75)
335 PF10579 Rapsyn_N: Rapsyn N-te 77.3 23 0.0005 25.1 8.5 66 41-109 13-79 (80)
336 KOG1920|consensus 76.9 1.1E+02 0.0024 32.9 16.9 81 94-182 940-1027(1265)
337 PF01535 PPR: PPR repeat; Int 76.6 4.2 9.2E-05 22.2 3.1 27 156-182 2-28 (31)
338 KOG3807|consensus 76.5 63 0.0014 29.8 15.6 189 77-280 188-407 (556)
339 cd02656 MIT MIT: domain contai 76.5 7.5 0.00016 27.1 5.0 30 116-146 9-38 (75)
340 PF12854 PPR_1: PPR repeat 75.6 6.2 0.00013 22.8 3.7 27 154-180 7-33 (34)
341 cd02683 MIT_1 MIT: domain cont 75.6 9.6 0.00021 26.9 5.3 35 30-65 3-37 (77)
342 PF10373 EST1_DNA_bind: Est1 D 75.5 6.7 0.00014 34.5 5.7 44 133-182 1-44 (278)
343 PF15015 NYD-SP12_N: Spermatog 75.4 50 0.0011 31.4 11.1 115 27-148 169-296 (569)
344 cd02679 MIT_spastin MIT: domai 75.1 8.1 0.00018 27.5 4.8 34 112-146 7-40 (79)
345 KOG3783|consensus 74.7 54 0.0012 32.0 11.5 87 15-103 432-521 (546)
346 TIGR00756 PPR pentatricopeptid 74.3 6.9 0.00015 21.8 3.7 28 156-183 2-29 (35)
347 COG4976 Predicted methyltransf 74.2 4.4 9.5E-05 35.1 3.8 53 88-147 10-62 (287)
348 PF13041 PPR_2: PPR repeat fam 73.9 7.4 0.00016 24.4 4.1 34 155-188 4-37 (50)
349 PF04053 Coatomer_WDAD: Coatom 73.4 75 0.0016 30.5 12.4 25 115-140 349-373 (443)
350 cd02678 MIT_VPS4 MIT: domain c 72.9 12 0.00027 26.1 5.3 35 30-65 3-37 (75)
351 PF03635 Vps35: Vacuolar prote 72.2 1.3E+02 0.0028 31.3 16.4 120 29-148 587-719 (762)
352 KOG1497|consensus 72.1 80 0.0017 28.9 18.0 70 110-181 100-171 (399)
353 TIGR03504 FimV_Cterm FimV C-te 71.7 7.9 0.00017 24.1 3.6 25 158-182 3-27 (44)
354 cd02677 MIT_SNX15 MIT: domain 71.2 12 0.00026 26.3 4.9 22 124-146 17-38 (75)
355 PF07720 TPR_3: Tetratricopept 70.5 18 0.00039 21.4 4.8 24 155-178 2-25 (36)
356 PF14853 Fis1_TPR_C: Fis1 C-te 70.4 24 0.00051 22.9 5.8 32 115-147 3-34 (53)
357 COG3118 Thioredoxin domain-con 69.9 84 0.0018 28.4 10.9 30 155-184 237-266 (304)
358 COG2909 MalT ATP-dependent tra 69.7 1.5E+02 0.0032 31.0 23.0 91 88-180 473-565 (894)
359 cd02684 MIT_2 MIT: domain cont 68.3 14 0.00031 25.9 4.8 22 124-146 17-38 (75)
360 COG3629 DnrI DNA-binding trans 68.3 34 0.00073 30.7 8.2 62 114-182 154-215 (280)
361 cd02679 MIT_spastin MIT: domai 68.1 16 0.00034 26.0 5.0 37 28-65 3-39 (79)
362 KOG1920|consensus 67.9 67 0.0014 34.4 11.2 26 116-141 1015-1040(1265)
363 KOG4521|consensus 67.3 72 0.0016 34.2 11.1 122 41-171 927-1071(1480)
364 PF13812 PPR_3: Pentatricopept 66.9 16 0.00035 20.2 4.2 28 156-183 3-30 (34)
365 PF07720 TPR_3: Tetratricopept 66.7 20 0.00044 21.1 4.5 30 115-145 3-34 (36)
366 TIGR03504 FimV_Cterm FimV C-te 66.6 25 0.00053 21.9 5.0 25 117-142 3-27 (44)
367 KOG0985|consensus 66.5 1.9E+02 0.0041 31.0 20.7 28 155-182 1221-1248(1666)
368 KOG0985|consensus 65.5 2E+02 0.0043 30.9 20.1 155 95-275 1090-1260(1666)
369 KOG2460|consensus 65.4 1.4E+02 0.0031 29.2 14.8 62 250-318 379-440 (593)
370 COG5091 SGT1 Suppressor of G2 65.0 41 0.00089 29.9 7.8 79 88-167 54-132 (368)
371 cd02656 MIT MIT: domain contai 64.4 44 0.00096 23.0 7.9 35 30-65 3-37 (75)
372 smart00671 SEL1 Sel1-like repe 63.6 15 0.00033 20.7 3.7 26 76-101 3-33 (36)
373 cd02681 MIT_calpain7_1 MIT: do 63.4 50 0.0011 23.2 7.9 17 88-104 21-37 (76)
374 PF04781 DUF627: Protein of un 61.8 69 0.0015 24.4 9.7 64 120-187 3-77 (111)
375 cd02682 MIT_AAA_Arch MIT: doma 60.2 57 0.0012 22.9 7.6 33 32-65 5-37 (75)
376 cd02677 MIT_SNX15 MIT: domain 59.6 58 0.0013 22.8 7.8 34 31-65 4-37 (75)
377 PF10952 DUF2753: Protein of u 59.6 83 0.0018 24.6 7.9 66 116-182 4-78 (140)
378 PF15015 NYD-SP12_N: Spermatog 57.7 1.1E+02 0.0023 29.3 9.5 101 73-180 176-288 (569)
379 cd09241 BRO1_ScRim20-like Prot 57.5 87 0.0019 29.1 9.3 37 29-66 102-147 (355)
380 cd09240 BRO1_Alix Protein-inte 57.5 1.4E+02 0.003 27.6 10.6 37 29-66 115-160 (346)
381 KOG0686|consensus 57.3 1.8E+02 0.0038 27.7 19.0 143 136-307 132-282 (466)
382 KOG4014|consensus 57.1 73 0.0016 26.8 7.6 52 47-106 181-237 (248)
383 PF05053 Menin: Menin; InterP 57.1 2E+02 0.0043 28.5 11.5 74 88-163 294-367 (618)
384 PF14561 TPR_20: Tetratricopep 56.9 72 0.0016 23.1 7.5 46 134-185 8-53 (90)
385 COG5187 RPN7 26S proteasome re 56.8 1.5E+02 0.0033 26.8 19.9 141 48-192 89-230 (412)
386 KOG1463|consensus 56.7 1.7E+02 0.0036 27.2 16.7 136 41-177 135-272 (411)
387 PF08238 Sel1: Sel1 repeat; I 55.7 38 0.00082 19.5 4.5 30 114-143 2-37 (39)
388 COG1747 Uncharacterized N-term 55.2 2.2E+02 0.0047 28.1 18.3 184 115-318 101-284 (711)
389 COG3947 Response regulator con 55.0 1.7E+02 0.0036 26.6 10.7 61 115-182 281-341 (361)
390 KOG2114|consensus 54.8 1.9E+02 0.0041 30.0 11.4 46 137-182 350-396 (933)
391 PF05053 Menin: Menin; InterP 53.0 1.4E+02 0.0031 29.5 9.9 94 88-182 252-346 (618)
392 PHA02537 M terminase endonucle 52.9 1.6E+02 0.0034 25.7 9.7 119 28-149 65-213 (230)
393 KOG1938|consensus 51.5 83 0.0018 33.0 8.5 72 71-144 313-385 (960)
394 cd09243 BRO1_Brox_like Protein 51.1 2E+02 0.0044 26.7 10.5 38 28-65 104-152 (353)
395 cd09246 BRO1_Alix_like_1 Prote 50.4 1.8E+02 0.004 26.9 10.2 38 29-67 107-153 (353)
396 KOG0890|consensus 49.3 5.1E+02 0.011 30.6 16.5 86 89-183 1645-1731(2382)
397 COG5187 RPN7 26S proteasome re 47.9 2.2E+02 0.0047 25.9 13.6 89 89-178 91-179 (412)
398 PF10255 Paf67: RNA polymerase 47.8 1.4E+02 0.0031 28.2 9.0 63 116-182 125-192 (404)
399 KOG2908|consensus 47.0 2.4E+02 0.0052 26.1 19.9 85 88-173 90-176 (380)
400 PRK10941 hypothetical protein; 45.8 1.3E+02 0.0029 26.7 8.2 68 74-148 181-249 (269)
401 KOG4014|consensus 44.9 1.9E+02 0.0041 24.4 11.4 91 46-144 39-142 (248)
402 cd09239 BRO1_HD-PTP_like Prote 44.0 2.6E+02 0.0055 26.1 10.1 17 50-66 139-155 (361)
403 KOG1914|consensus 43.9 3.4E+02 0.0073 27.0 17.5 31 112-143 285-322 (656)
404 PF09613 HrpB1_HrpK: Bacterial 43.6 1.8E+02 0.0039 23.7 8.7 71 111-188 8-78 (160)
405 KOG1310|consensus 42.9 57 0.0012 32.0 5.5 104 31-147 371-478 (758)
406 PF08626 TRAPPC9-Trs120: Trans 40.8 59 0.0013 35.5 6.1 56 109-165 238-293 (1185)
407 COG2909 MalT ATP-dependent tra 40.5 4.6E+02 0.01 27.6 23.7 88 41-130 465-553 (894)
408 KOG0276|consensus 39.8 1.8E+02 0.0039 29.2 8.4 27 75-101 667-694 (794)
409 PF00244 14-3-3: 14-3-3 protei 36.7 2.2E+02 0.0048 24.7 8.0 54 89-143 142-198 (236)
410 COG3947 Response regulator con 36.3 1.4E+02 0.003 27.2 6.5 57 81-144 286-343 (361)
411 PF04910 Tcf25: Transcriptiona 36.3 1.6E+02 0.0034 27.4 7.5 119 130-267 10-135 (360)
412 PF10952 DUF2753: Protein of u 36.1 2.1E+02 0.0046 22.4 8.1 54 88-142 16-78 (140)
413 PF07079 DUF1347: Protein of u 35.5 4.2E+02 0.0092 25.7 17.4 62 110-180 460-521 (549)
414 PF11846 DUF3366: Domain of un 35.5 1.2E+02 0.0027 25.0 6.1 49 131-186 128-176 (193)
415 COG3898 Uncharacterized membra 35.4 4E+02 0.0087 25.4 22.4 27 247-273 341-367 (531)
416 smart00101 14_3_3 14-3-3 homol 35.3 3.1E+02 0.0067 24.0 8.7 52 130-181 144-198 (244)
417 COG1655 Uncharacterized protei 34.8 2.1E+02 0.0046 24.8 7.2 44 28-71 108-152 (267)
418 smart00101 14_3_3 14-3-3 homol 34.7 2.2E+02 0.0048 24.9 7.7 54 89-143 144-200 (244)
419 COG2912 Uncharacterized conser 34.1 2.1E+02 0.0046 25.4 7.4 72 111-189 179-250 (269)
420 PF03097 BRO1: BRO1-like domai 34.0 2E+02 0.0042 26.7 7.8 38 28-65 102-147 (377)
421 KOG0890|consensus 33.8 8.7E+02 0.019 28.8 15.4 142 31-181 1667-1831(2382)
422 COG5091 SGT1 Suppressor of G2 33.2 67 0.0015 28.6 4.1 67 128-194 53-119 (368)
423 smart00299 CLH Clathrin heavy 33.1 2.2E+02 0.0049 21.8 9.3 22 115-138 43-64 (140)
424 smart00386 HAT HAT (Half-A-TPR 32.4 34 0.00074 18.4 1.6 25 250-274 2-26 (33)
425 COG3629 DnrI DNA-binding trans 31.5 2.2E+02 0.0049 25.5 7.2 61 76-143 155-216 (280)
426 PF04097 Nic96: Nup93/Nic96; 31.2 5.6E+02 0.012 25.8 11.4 33 30-62 410-442 (613)
427 KOG1914|consensus 30.9 5.5E+02 0.012 25.6 14.8 34 31-64 283-316 (656)
428 PF00244 14-3-3: 14-3-3 protei 30.9 3.6E+02 0.0077 23.4 16.2 79 104-182 107-197 (236)
429 KOG4563|consensus 30.8 2.3E+02 0.0051 26.4 7.3 59 29-87 36-96 (400)
430 PF10366 Vps39_1: Vacuolar sor 30.7 2.2E+02 0.0048 21.4 6.2 26 116-142 42-67 (108)
431 KOG1938|consensus 29.1 3.5E+02 0.0075 28.6 8.8 94 88-183 290-384 (960)
432 KOG1497|consensus 29.0 4.7E+02 0.01 24.2 16.1 92 91-183 101-213 (399)
433 smart00777 Mad3_BUB1_I Mad3/BU 28.7 2.8E+02 0.0061 21.5 7.6 81 91-179 44-124 (125)
434 PF09670 Cas_Cas02710: CRISPR- 28.3 5E+02 0.011 24.3 17.0 57 43-103 140-199 (379)
435 PF09797 NatB_MDM20: N-acetylt 28.0 4.8E+02 0.01 24.0 10.0 53 130-188 199-251 (365)
436 PF04097 Nic96: Nup93/Nic96; 26.7 6.7E+02 0.015 25.2 13.7 115 48-181 408-532 (613)
437 KOG4322|consensus 25.8 6E+02 0.013 24.4 11.5 100 82-182 281-381 (482)
438 PF02064 MAS20: MAS20 protein 25.7 1E+02 0.0022 23.8 3.6 30 116-146 66-95 (121)
439 KOG2709|consensus 25.1 2.9E+02 0.0062 26.4 6.8 33 113-146 22-54 (560)
440 PF02064 MAS20: MAS20 protein 24.9 1.3E+02 0.0028 23.3 4.0 31 158-188 67-97 (121)
441 PF12309 KBP_C: KIF-1 binding 24.8 5.8E+02 0.013 23.9 13.9 112 72-183 169-338 (371)
442 COG2178 Predicted RNA-binding 24.7 2.4E+02 0.0052 23.9 5.8 55 128-182 43-97 (204)
443 PRK05685 fliS flagellar protei 24.4 3.4E+02 0.0074 21.1 7.3 36 30-66 32-67 (132)
444 KOG2168|consensus 24.0 8.5E+02 0.018 25.5 11.9 116 27-162 635-755 (835)
445 COG3118 Thioredoxin domain-con 23.9 5.5E+02 0.012 23.3 14.2 60 115-179 238-297 (304)
446 PHA02537 M terminase endonucle 23.6 4.9E+02 0.011 22.6 9.7 37 72-108 167-213 (230)
447 TIGR02561 HrpB1_HrpK type III 22.9 4.1E+02 0.0089 21.5 7.6 53 128-186 24-76 (153)
448 COG4259 Uncharacterized protei 22.6 1.4E+02 0.0029 22.5 3.5 33 115-148 74-106 (121)
449 KOG0991|consensus 22.6 5.5E+02 0.012 22.8 12.8 100 209-316 204-316 (333)
450 KOG0546|consensus 22.4 1.6E+02 0.0035 27.3 4.7 109 31-146 219-341 (372)
451 smart00299 CLH Clathrin heavy 22.3 3.6E+02 0.0078 20.6 13.8 45 47-97 20-64 (140)
452 PF12753 Nro1: Nuclear pore co 21.9 1.7E+02 0.0036 27.7 4.8 49 133-181 330-389 (404)
453 PF14689 SPOB_a: Sensor_kinase 21.7 2.5E+02 0.0055 18.6 4.7 26 158-183 27-52 (62)
454 COG1516 FliS Flagellin-specifi 21.6 4.1E+02 0.0088 20.9 7.4 36 30-66 28-63 (132)
455 KOG4563|consensus 20.1 4.3E+02 0.0093 24.8 6.9 62 112-174 40-103 (400)
No 1
>KOG1586|consensus
Probab=100.00 E-value=7.5e-51 Score=337.28 Aligned_cols=279 Identities=60% Similarity=0.952 Sum_probs=266.3
Q ss_pred chHHHHhHHHHHHHhhhh--hhcccc-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 2 TDEKLVCEKQLAAALLRV--VFITKV-GGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLL 78 (320)
Q Consensus 2 ~~~~l~~~~~~~~k~~~~--~~~~~~-~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~ 78 (320)
.+.+|+.+ |||.++. +|. +| |++++++|+++|.+||+.|+..++|+.|..+|.++++++.+.++.+.++..|.
T Consensus 3 ~a~~l~k~---AEkK~~~s~gF~-lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Yv 78 (288)
T KOG1586|consen 3 DAVQLMKK---AEKKLNGSGGFL-LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYV 78 (288)
T ss_pred cHHHHHHH---HHHhcccCCccc-ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 35678888 8888763 444 44 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHH
Q psy9376 79 DAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLL 158 (320)
Q Consensus 79 ~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~ 158 (320)
.+++||++.+|++|++|+++|++|+.+.|++..+|+.+..+|++|+..|.++++||.+|++|.+.|..+.....+..|+.
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHh-hhhHHHHHHHHHHHHhCCCccCcHHHHHHH
Q psy9376 159 KVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLC-IDVINAHNAIDRYKTIYPAFQDSREYKLLR 237 (320)
Q Consensus 159 ~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~ 237 (320)
++++.-..+|+|.+||..|+++++..+++++++|+++++|+.+++|+++ .|...+..|+++|++++|.|.+|+||+++.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk 238 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLK 238 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCC
Q psy9376 238 ILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSL 284 (320)
Q Consensus 238 ~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~ 284 (320)
+|+++++.+|.+.|.+.++.|+++.+||.|.++||++||+.|+...+
T Consensus 239 ~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~siq~~ed 285 (288)
T KOG1586|consen 239 DLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSIQGDED 285 (288)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999997654
No 2
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=100.00 E-value=1.2e-48 Score=350.95 Aligned_cols=276 Identities=49% Similarity=0.762 Sum_probs=251.8
Q ss_pred chHHHHhHHHHHHHhhhhh--hccccC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 2 TDEKLVCEKQLAAALLRVV--FITKVG--GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNL 77 (320)
Q Consensus 2 ~~~~l~~~~~~~~k~~~~~--~~~~~~--~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~ 77 (320)
.|++|+.+ |+|+++++ |++||+ +|++++|+++|.+||+.|+..|+|++|+++|.+|++++.+++++..++.+|
T Consensus 2 ~a~~l~~~---Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~ 78 (282)
T PF14938_consen 2 EAEELIKE---AEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAY 78 (282)
T ss_dssp HHHHHHHH---HHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHH---HHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 47899999 99999953 557775 369999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHH
Q psy9376 78 LDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCL 157 (320)
Q Consensus 78 ~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~ 157 (320)
.+++.+|++.++++|+++|++|++++...|++..+|.++.++|.+|+..+|++++|+++|++|+++|+..+.+..+..++
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 99999999999999999999999999999999999999999999999954899999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCCccCcHHHHHH
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSREYKLL 236 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~f~~s~e~~~l 236 (320)
.++|.++..+|+|++|++.|++++...+++++++++++.+++++++|+|+. |.+.++++++.|.+.+|.|.+|+|++++
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhc
Q psy9376 237 RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVG 280 (320)
Q Consensus 237 ~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~ 280 (320)
.+|++|++.+|.+.|++++..|+++.+||||+++||++||+.|+
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~~~~ 282 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIKKKIE 282 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999998774
No 3
>KOG1586|consensus
Probab=99.97 E-value=2.2e-29 Score=209.56 Aligned_cols=188 Identities=31% Similarity=0.429 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 71 ~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
+++++.|..+++.|+.. +++.|..+|.+|.+++.+.|+.+++|.+|...+++|.+ +++++|+.++++|+++|.+.|+
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk--~~~~eAv~cL~~aieIyt~~Gr 108 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK--VDPEEAVNCLEKAIEIYTDMGR 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc--cChHHHHHHHHHHHHHHHhhhH
Confidence 34555566666666666 77888899999999999999999999999999999998 6999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc
Q psy9376 150 NSSANKCLLKVAHHAAL-LQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ 228 (320)
Q Consensus 150 ~~~a~~~~~~la~~~~~-~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~ 228 (320)
...++.....||++|.. +.++++||.+|++++....++... .
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-------------------------------------s 151 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-------------------------------------S 151 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-------------------------------------h
Confidence 99999999999999975 589999999999999765443321 1
Q ss_pred CcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhchhHHHhHHHHHHHHh-H
Q psy9376 229 DSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYFFRAALCHLC-I 307 (320)
Q Consensus 229 ~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~y~~~a~~c~~~-~ 307 (320)
.+..|.+-..-+.+ ..++|.+||.+|+++.+ .+++|+|+|||+|||||+||||||| +
T Consensus 152 sANKC~lKvA~yaa----~leqY~~Ai~iyeqva~------------------~s~~n~LLKys~KdyflkAgLChl~~~ 209 (288)
T KOG1586|consen 152 SANKCLLKVAQYAA----QLEQYSKAIDIYEQVAR------------------SSLDNNLLKYSAKDYFLKAGLCHLCKA 209 (288)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH------------------HhccchHHHhHHHHHHHHHHHHhHhcc
Confidence 11122222222222 47999999999999998 8999999999999999999999999 6
Q ss_pred HHHH---HHHHhhhc
Q psy9376 308 DVIN---AYTQYKAN 319 (320)
Q Consensus 308 ~~~~---~~~~~~~~ 319 (320)
|+|+ |+++|..+
T Consensus 210 D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 210 DEVNAQRALEKYQEL 224 (288)
T ss_pred cHHHHHHHHHHHHhc
Confidence 9988 88998765
No 4
>KOG1585|consensus
Probab=99.94 E-value=2.2e-24 Score=180.84 Aligned_cols=245 Identities=20% Similarity=0.248 Sum_probs=210.4
Q ss_pred hHHHHhHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy9376 3 DEKLVCEKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAAN 82 (320)
Q Consensus 3 ~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~ 82 (320)
+.+-|.| +.++..-....| ++||+.|...|++|++.|+..++|++|..|+.+|.+.++..++++.+|.+|++++.
T Consensus 5 aakki~e---a~e~~a~t~~~w--kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaam 79 (308)
T KOG1585|consen 5 AAKKISE---ADEMTALTLTRW--KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAM 79 (308)
T ss_pred HHHHHHH---HHHHHHHHhhcc--CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4455566 667776666667 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 83 CFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 83 ~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
..++. .+.|++.+++||+.+|.++|+++.++.++.+.|.+.++ .++++|+.+|++++.++...++...+.+.+..++
T Consensus 80 Lake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len--v~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 80 LAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN--VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99998 89999999999999999999999999999999999998 5999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCCccCcHHHHHHHHHH
Q psy9376 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSREYKLLRILI 240 (320)
Q Consensus 162 ~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~ 240 (320)
.++.++.++++|...+.+-+.....-... .+.-..+..+++++|+. |...+++.+..-.+ .|.|..|.+++.+.+|+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y-~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q-ip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAY-NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ-IPAFLKSEDSRSLENLL 235 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhc-ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc-CccccChHHHHHHHHHH
Confidence 99999999999999988876542221110 01112244457777775 88888888876544 59999999999999999
Q ss_pred HHHHhcCHhHHHHHHH
Q psy9376 241 EHIEEQNVDGFTEAVK 256 (320)
Q Consensus 241 ~a~~~~d~~~~~~Ai~ 256 (320)
.+++.+|.+.+.+-+.
T Consensus 236 ~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 236 TAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHhccCCHHHHHHHHc
Confidence 9998888887777665
No 5
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.91 E-value=1.1e-22 Score=182.60 Aligned_cols=186 Identities=33% Similarity=0.470 Sum_probs=145.2
Q ss_pred ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 69 TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 69 ~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+...++..|..+|++|+.. ++++|.++|.+|.+++.+.+++..++..+.+.+.+|.. +++++|+++|++|+++|...
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~--~~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK--GDPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHhc
Confidence 3445666677777777776 78899999999999999999999999999999999998 59999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCC
Q psy9376 148 ESNSSANKCLLKVAHHAALL-QNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPA 226 (320)
Q Consensus 148 ~~~~~a~~~~~~la~~~~~~-g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~ 226 (320)
|++..++.++.++|.+|... |++++|+++|+++.......... ..+.+.+.
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-----------------------~~a~~~~~----- 159 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-----------------------HSAAECLL----- 159 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-----------------------HHHHHHHH-----
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-----------------------hhHHHHHH-----
Confidence 99999999999999999998 99999999999998754332210 00000000
Q ss_pred ccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhchhHHHhHHHHHHHHh
Q psy9376 227 FQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYFFRAALCHLC 306 (320)
Q Consensus 227 f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~y~~~a~~c~~~ 306 (320)
-+..+. + ..++|++|++.|+++++ ...+++++++++++||++++|||||
T Consensus 160 --------~~A~l~--~---~l~~y~~A~~~~e~~~~------------------~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 160 --------KAADLY--A---RLGRYEEAIEIYEEVAK------------------KCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --------HHHHHH--H---HTT-HHHHHHHHHHHHH------------------TCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHH--H---HhCCHHHHHHHHHHHHH------------------HhhcccccchhHHHHHHHHHHHHHH
Confidence 012221 1 36799999999999988 7899999999999999999999999
Q ss_pred H-HHHHHHHH
Q psy9376 307 I-DVINAYTQ 315 (320)
Q Consensus 307 ~-~~~~~~~~ 315 (320)
+ |.|.|...
T Consensus 209 ~~D~v~A~~~ 218 (282)
T PF14938_consen 209 MGDYVAARKA 218 (282)
T ss_dssp TT-HHHHHHH
T ss_pred cCCHHHHHHH
Confidence 9 77775443
No 6
>KOG4626|consensus
Probab=99.78 E-value=2e-18 Score=161.41 Aligned_cols=215 Identities=21% Similarity=0.262 Sum_probs=162.0
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH--------------HcCChH-------
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHM--------------KSGTKH------- 71 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~--------------~~~~~~------- 71 (320)
+|+...|+..|++| |++|+..+.|+.|+.||++|+.+.+ ..|.-+
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 78999999999887 9999999999999999999877532 112111
Q ss_pred -------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 72 -------DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 72 -------~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
.-.++|.++|++++.. +..+|+.||.+|+.+.+...+ +..++|++|.++ |..++|+.+|++|++.
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had------am~NLgni~~E~-~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD------AMNNLGNIYREQ-GKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH------HHHHHHHHHHHh-ccchHHHHHHHHHHhh
Confidence 1235577778888777 888888888888888776655 789999999998 9999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy9376 144 FKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTI 223 (320)
Q Consensus 144 ~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~ 223 (320)
++.- +.+..++|.+|..+|++++|+.+|++++++.|.-.. .+.+.|... ..+++...|+..|..+
T Consensus 384 ~p~~------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd-------a~~NmGnt~--ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 384 FPEF------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD-------ALSNMGNTY--KEMGDVSAAIQCYTRA 448 (966)
T ss_pred Chhh------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH-------HHHhcchHH--HHhhhHHHHHHHHHHH
Confidence 9883 678899999999999999999999999988765432 133333332 2456666666666554
Q ss_pred ---CCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHH
Q psy9376 224 ---YPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTT 270 (320)
Q Consensus 224 ---~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~ 270 (320)
.|.|.+.. .+|.. ..+|.|...+||..|+.+++|+|.-+.
T Consensus 449 I~~nPt~AeAh-----sNLas--i~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 449 IQINPTFAEAH-----SNLAS--IYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HhcCcHHHHHH-----hhHHH--HhhccCCcHHHHHHHHHHHccCCCCch
Confidence 44444432 22222 235899999999999999999886544
No 7
>KOG4626|consensus
Probab=99.75 E-value=5.4e-18 Score=158.51 Aligned_cols=225 Identities=15% Similarity=0.219 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|+.++|..+|.+| |..|..+|+...|+..|++|+++- | .-..+|.++|++|++. .+++
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-----P-~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-----P-NFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-----C-cchHHHhhHHHHHHHHhcchH
Confidence 35666666666655 456666666666666666666662 2 3467899999999998 8889
Q ss_pred HHHHHHHHHHHHHHcC--------------ChHHHH--------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 92 AIDCLSKAIVIYTDMG--------------RFTMAA--------------KHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~--------------~~~~aa--------------~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
|+.||.+|+.+.|... ..+.+. .++.++|+++... |+..+|..+|.+|+.+
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK-GSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHHHh
Confidence 9999999888655332 222221 1344555555553 5555555555555555
Q ss_pred hhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy9376 144 FKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTI 223 (320)
Q Consensus 144 ~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~ 223 (320)
.+.. ++.+.++|.+|.+.|..++|..+|.++....+.-... +.+ +.-++.+++..++|+..|+++
T Consensus 350 ~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa-------~nN--La~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 350 CPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA-------HNN--LASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred CCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh-------hhh--HHHHHHhcccHHHHHHHHHHH
Confidence 4442 3455555555555555555555555555443331110 111 112234677778888888765
Q ss_pred C---CCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhc
Q psy9376 224 Y---PAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVG 280 (320)
Q Consensus 224 ~---~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~ 280 (320)
. |.|.++... ++..+ ...++.+.|+++|.+++.++|-....+.++.-..-
T Consensus 415 lrI~P~fAda~~N--mGnt~-----ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 415 LRIKPTFADALSN--MGNTY-----KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred HhcCchHHHHHHh--cchHH-----HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 3 333332111 12222 24678888888888888888888877766654443
No 8
>KOG2003|consensus
Probab=99.64 E-value=1.1e-14 Score=132.33 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=165.1
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHH
Q psy9376 26 GGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNE 90 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~ 90 (320)
..||+++|++.|.+| |..+..+|+.++|++||.+...+.. ..++.+.+++++|..+ ++.
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhCHH
Confidence 367888888888877 4566778888888888888777753 4677888888888888 888
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|++++.++..+.|.... ++.++|.+|... |+-.+|..|+-.+..+||.+ .++...+|..|....-+
T Consensus 576 qaie~~~q~~slip~dp~------ilskl~dlydqe-gdksqafq~~ydsyryfp~n------ie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPA------ILSKLADLYDQE-GDKSQAFQCHYDSYRYFPCN------IETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHHHhcccCCCCHH------HHHHHHHHhhcc-cchhhhhhhhhhcccccCcc------hHHHHHHHHHHHhhHHH
Confidence 888888888887775443 788888888887 88888888888888888774 56778888889988889
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH-HHHHHHHHHHHhcCHh
Q psy9376 171 NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREY-KLLRILIEHIEEQNVD 249 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~-~~l~~l~~a~~~~d~~ 249 (320)
++||.+|+++.-..|+ +.+|+ .+.+.|. +..+.+++|++-|.++...||+..+| +++..+...+...+..
T Consensus 643 ekai~y~ekaaliqp~--~~kwq-----lmiasc~--rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~k 713 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPN--QSKWQ-----LMIASCF--RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAK 713 (840)
T ss_pred HHHHHHHHHHHhcCcc--HHHHH-----HHHHHHH--HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHH
Confidence 9999999998865443 33442 2333342 46899999999999999999999998 6778887666666778
Q ss_pred HHHHHHHHHhhhcc
Q psy9376 250 GFTEAVKDYDSISR 263 (320)
Q Consensus 250 ~~~~Ai~~ye~~~~ 263 (320)
.|.+-++..+++.+
T Consensus 714 ey~~klek~eki~e 727 (840)
T KOG2003|consen 714 EYADKLEKAEKIKE 727 (840)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888765
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=7.9e-14 Score=138.54 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|+++ |.++...|++++|+..|++++++. + .....+...|.++... ++++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-----S-EDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHH
Confidence 57888888888776 556667788888888888887763 2 2245677788888777 8888
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+.+|++++.+.|++.. .+.++|.++... |++++|+..|++++..++.. ..++..+|.++...|+++
T Consensus 418 A~~~~~kal~l~P~~~~------~~~~la~~~~~~-g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 418 AGKDYQKSIDLDPDFIF------SHIQLGVTQYKE-GSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHHHHHHcCccCHH------HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHH
Confidence 99999999888776543 678888888886 89999999999998887764 457888899999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHH-HHHHHHHHHhcCHhH
Q psy9376 172 KAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKL-LRILIEHIEEQNVDG 250 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~-l~~l~~a~~~~d~~~ 250 (320)
+|++.|+++....++...........+..+.. ++...++.++|.+.++++....|.+..... +..++ ...|+
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~--~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~-----~~~g~ 557 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALA--LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLL-----LQQGD 557 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-----HHccC
Confidence 99999999887655432211111111111111 112346777777777766555555544322 23333 14688
Q ss_pred HHHHHHHHhhhcchhh
Q psy9376 251 FTEAVKDYDSISRLDQ 266 (320)
Q Consensus 251 ~~~Ai~~ye~~~~ld~ 266 (320)
+++|++.|+++.++.+
T Consensus 558 ~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 558 VDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887655
No 10
>KOG1840|consensus
Probab=99.60 E-value=1.6e-12 Score=123.59 Aligned_cols=231 Identities=17% Similarity=0.166 Sum_probs=166.8
Q ss_pred CCCHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRA----------------------ANMFKMAKKWNNAGKAFVEAANLHMKS-G-TKHDAACNLLDAAN 82 (320)
Q Consensus 27 ~~~~~~A~~~y~~a----------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~-~-~~~~aa~~~~~aa~ 82 (320)
.|+++.|...+..| |..|...+++++|+..|++|+.+.+.. | +.+..+..+.++|.
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56777777776665 677888999999999999999999853 3 55678899999999
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHH
Q psy9376 83 CFKKT-DNEAAIDCLSKAIVIYTDM--GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCL 157 (320)
Q Consensus 83 ~y~~~-~~~eA~~~~~kA~~l~~~~--~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~ 157 (320)
.|... ++.+|..++++|++|+... .+..+.+..+.+++.++... +++++|+.+|+++++++... ......+..+
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 99887 9999999999999999873 35678888999999999998 99999999999999998842 3344678999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhh--hhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHH----hCCCccCc-
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGRTSLD--SSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKT----IYPAFQDS- 230 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~----~~~~f~~s- 230 (320)
.++|.+|...|+|++|.++|++++.+... .....+.++..+..+..|.-......+.+-+.++.. ..+.+|+.
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 99999999999999999999999865211 111111122222222222100123334444444433 34444432
Q ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 231 REYKLLRILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 231 ~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
..+.-|..++. ..|+|++|++.-+++.+
T Consensus 451 ~~~~nL~~~Y~-----~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 451 YTYLNLAALYR-----AQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHH-----HcccHHHHHHHHHHHHH
Confidence 33333444443 47999999999998874
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=2.3e-13 Score=135.28 Aligned_cols=222 Identities=11% Similarity=0.082 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CH
Q psy9376 28 NKIDEAIECYTRA-----------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DN 89 (320)
Q Consensus 28 ~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~ 89 (320)
+++++|++.|+++ |.++...|++++|+..|++++++.+ .....|...|.++... ++
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P------~~~~~~~~la~~~~~~g~~ 381 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP------RVTQSYIKRASMNLELGDP 381 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCCH
Confidence 4677777776654 5566778999999999999998842 2456788889998887 99
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC
Q psy9376 90 EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 90 ~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~ 169 (320)
++|+.++++++++.+.+. .++..+|.++... |++++|+.+|++++++.+.. ...+..+|.++..+|+
T Consensus 382 ~eA~~~~~~al~~~p~~~------~~~~~lg~~~~~~-g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 382 DKAEEDFDKALKLNSEDP------DIYYHRAQLHFIK-GEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHCCC
Confidence 999999999998866543 3899999999997 99999999999999998764 4578899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHH---H--HHHHHHHHHHH
Q psy9376 170 YNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSRE---Y--KLLRILIEHIE 244 (320)
Q Consensus 170 y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e---~--~~l~~l~~a~~ 244 (320)
+++|+..|+++....|+.+.. +...+.+ +.+.++.++|++.|.++....+.... . .++...+..+
T Consensus 449 ~~eA~~~~~~al~~~P~~~~~-------~~~lg~~--~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~- 518 (615)
T TIGR00990 449 IASSMATFRRCKKNFPEAPDV-------YNYYGEL--LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF- 518 (615)
T ss_pred HHHHHHHHHHHHHhCCCChHH-------HHHHHHH--HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH-
Confidence 999999999999877665432 2222222 33567777788777765544443211 1 1122211111
Q ss_pred hcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhh
Q psy9376 245 EQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQV 279 (320)
Q Consensus 245 ~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~ 279 (320)
...+++++|+..|+++++++|-...++..+.+..
T Consensus 519 -~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 519 -QWKQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred -HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 1358999999999999998887776665555433
No 12
>KOG1126|consensus
Probab=99.52 E-value=4.7e-14 Score=133.58 Aligned_cols=205 Identities=19% Similarity=0.205 Sum_probs=161.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|++|..+++++.|+.||++|+.+. + .-+-+|...|.=+... +++.|..||++|+.+.+++-+ +|+.+
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQld-----p-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn------AwYGl 495 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLD-----P-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN------AWYGL 495 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccC-----C-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH------HHHhh
Confidence 899999999999999999999883 2 3456777777766666 799999999999999988876 89999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
|.+|.++ ++++.|.-.|++|+++.|.. ...+..+|.++.++|+.++|+.+|+++....+.+++.+|.
T Consensus 496 G~vy~Kq-ek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~------ 562 (638)
T KOG1126|consen 496 GTVYLKQ-EKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH------ 562 (638)
T ss_pred hhheecc-chhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH------
Confidence 9999998 99999999999999998875 4567789999999999999999999999888887765431
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCccC-cHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHh
Q psy9376 200 RAALCHLCIDVINAHNAIDRYKTIYPAFQD-SREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQ 278 (320)
Q Consensus 200 ~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~-s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~ 278 (320)
++ .+.-..++.++|+...+++...-|+ +.-+.+++.+.. ..+..+.|+..|-=+..+||-=+. ..|+..
T Consensus 563 ~~---~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k-----~~~~~~~Al~~f~~A~~ldpkg~~--i~~k~~ 632 (638)
T KOG1126|consen 563 RA---SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK-----RLGNTDLALLHFSWALDLDPKGAQ--IQIKAA 632 (638)
T ss_pred HH---HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH-----HHccchHHHHhhHHHhcCCCccch--hhHHHH
Confidence 11 1112456667777777666555554 344455566653 468899999999999999998888 566655
Q ss_pred hc
Q psy9376 279 VG 280 (320)
Q Consensus 279 ~~ 280 (320)
+.
T Consensus 633 ~~ 634 (638)
T KOG1126|consen 633 IE 634 (638)
T ss_pred hh
Confidence 54
No 13
>KOG1130|consensus
Probab=99.52 E-value=4.5e-13 Score=120.72 Aligned_cols=251 Identities=14% Similarity=0.171 Sum_probs=184.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy9376 26 GGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 26 ~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~ 104 (320)
|+.|+..-...|-+.|+.|..++||.+|.++...=+.+.+.+|+..+.|.+--++|++++-. .+++|+.|..+-+.+.+
T Consensus 47 GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~ar 126 (639)
T KOG1130|consen 47 GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAR 126 (639)
T ss_pred cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHH
Confidence 46777777778888899999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHhccCC--------------------HHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 105 DMGRFTMAAKHHQTIAEIYETDCVD--------------------QEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 105 ~~~~~~~aa~~~~~la~~y~~~l~~--------------------~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
+.|+.-..+++++++|++|... |+ ++.|+++|+.-+++.+..++....+.++.++|..|
T Consensus 127 eLgDrv~e~RAlYNlgnvYhak-Gk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTy 205 (639)
T KOG1130|consen 127 ELGDRVLESRALYNLGNVYHAK-GKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTY 205 (639)
T ss_pred HHhHHHhhhHHHhhhhhhhhhc-ccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCcee
Confidence 9999999999999999999875 44 45677777777777777888888899999999999
Q ss_pred HHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHH-------HhCCCccCcHHHHHHH
Q psy9376 165 ALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYK-------TIYPAFQDSREYKLLR 237 (320)
Q Consensus 165 ~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~-------~~~~~f~~s~e~~~l~ 237 (320)
..+|+|+.||...+.-+.+..+-.. +-..+-...+.+.|++.. +..+-|++.|. ++.+.-.+...|..+
T Consensus 206 YlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hifl--g~fe~A~ehYK~tl~LAielg~r~vEAQscYSL- 281 (639)
T KOG1130|consen 206 YLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFL--GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSL- 281 (639)
T ss_pred eeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhh--cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHh-
Confidence 9999999999887754433211000 001122334557777653 44444555553 333332233333333
Q ss_pred HHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhchhHHHh
Q psy9376 238 ILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYF 297 (320)
Q Consensus 238 ~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~y~ 297 (320)
..++.. ...|++||..+++-+ .|.+.+++. .+....-||+..-|
T Consensus 282 --gNtytl--l~e~~kAI~Yh~rHL-----------aIAqeL~Dr-iGe~RacwSLgna~ 325 (639)
T KOG1130|consen 282 --GNTYTL--LKEVQKAITYHQRHL-----------AIAQELEDR-IGELRACWSLGNAF 325 (639)
T ss_pred --hhHHHH--HHHHHHHHHHHHHHH-----------HHHHHHHHh-hhhHHHHHHHHHHH
Confidence 333331 578999999888754 355555532 23445556665544
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.52 E-value=1.1e-11 Score=116.21 Aligned_cols=209 Identities=14% Similarity=0.069 Sum_probs=127.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|..|...|++++|...|.++.+.. + ....++..++.++... ++++|++.+++++...+.... ...+..+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~-----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l 186 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEG-----D-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-VEIAHFYCEL 186 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCC-----c-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Confidence 334444455555555555554331 1 1233455555565555 677777777776665443322 1234456778
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
|.++... |++++|+.+|+++++..+.. ..++..+|.++...|++++|++.|+++....+.... ..+.
T Consensus 187 a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~ 253 (389)
T PRK11788 187 AQQALAR-GDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS------EVLP 253 (389)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH------HHHH
Confidence 8888886 88888988888888876542 356777888888899999999999988765443211 1111
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 200 RAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 200 ~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
. +..++...++.++|+..+..+....|+......+..++. ..+++++|+..++++.+.+|....+..-+.
T Consensus 254 ~--l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~-----~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 254 K--LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLE-----EQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred H--HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-----HhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 1 122233456666666666665444555433333333331 467899999999999988888876653333
No 15
>KOG0547|consensus
Probab=99.45 E-value=1.7e-11 Score=112.65 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=106.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAK 195 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~ 195 (320)
|..+|.+|... .+.++-...|.+|.++.+++ .++|..-|+++.-+++|++|+.-|+++....|++...
T Consensus 363 yI~~a~~y~d~-~~~~~~~~~F~~A~~ldp~n------~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~----- 430 (606)
T KOG0547|consen 363 YIKRAAAYADE-NQSEKMWKDFNKAEDLDPEN------PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA----- 430 (606)
T ss_pred HHHHHHHHhhh-hccHHHHHHHHHHHhcCCCC------CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH-----
Confidence 66666666665 67777777777777776665 3578888888899999999999999998887765432
Q ss_pred HhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 196 EYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 196 ~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
-+.+|.+.-.+.....++.-|++....||...|+.-+ ..++. |.++|++|++.|+++++|.|....|+..
T Consensus 431 ----~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt-----DqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 431 ----YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT-----DQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh-----hHHhHHHHHHHHHHHHhhcccccccccc
Confidence 2345544335677888888888888999999888665 55553 7999999999999999999996666555
Q ss_pred HH
Q psy9376 275 IK 276 (320)
Q Consensus 275 i~ 276 (320)
|.
T Consensus 502 ~~ 503 (606)
T KOG0547|consen 502 AA 503 (606)
T ss_pred ch
Confidence 44
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.1e-11 Score=103.37 Aligned_cols=206 Identities=13% Similarity=0.081 Sum_probs=148.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
.++.+.....+...|..+...|++++|...+++++... + .....+..+|.++... ++++|+..+++++.+.+.
T Consensus 24 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-----P-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34566667788888999999999999999999998773 2 2356777888898887 999999999999998765
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 106 ~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
... .+.++|.++... |++++|+..|++++..... ......+..+|.++...|++++|+..|+++....+
T Consensus 98 ~~~------~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 98 NGD------VLNNYGTFLCQQ-GKYEQAMQQFEQAIEDPLY----PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred CHH------HHHHHHHHHHHc-ccHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 443 789999999997 9999999999999975322 12345678899999999999999999999988765
Q ss_pred hhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 186 DSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 186 ~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
+.... +...+ .++...++.++|...+++.....+.+.+...+ ..+.. ..++.++|....+.+.+
T Consensus 167 ~~~~~-------~~~la--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 167 QRPES-------LLELA--ELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIAR-----ALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CChHH-------HHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHh
Confidence 53321 22222 22234455556655555443334444444433 22221 35778888887776654
No 17
>KOG1130|consensus
Probab=99.42 E-value=1.2e-11 Score=111.57 Aligned_cols=224 Identities=12% Similarity=0.112 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q psy9376 27 GNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~ 86 (320)
-+||++|+++-..- |+.++..|.|++|+.|..+-+.+.+.+|+.-..+.+++++|++|..
T Consensus 68 L~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha 147 (639)
T KOG1130|consen 68 LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHA 147 (639)
T ss_pred HhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh
Confidence 36899999876432 7899999999999999999999999999999999999999999975
Q ss_pred C-------C--------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 87 T-------D--------------NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 87 ~-------~--------------~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
. . .+.|+++|+.=+++....|+.-..++++-++|+.|--. |++++||..-+.=+.+.+
T Consensus 148 kGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL-Gdf~~ai~~H~~RL~ia~ 226 (639)
T KOG1130|consen 148 KGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL-GDFDQAIHFHKLRLEIAQ 226 (639)
T ss_pred cccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee-ccHHHHHHHHHHHHHHHH
Confidence 3 1 35577777777777788899999999999999999985 999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--hhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHH--
Q psy9376 146 GEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT--SLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYK-- 221 (320)
Q Consensus 146 ~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~--~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~-- 221 (320)
+-|+......++.++|.+++-+|+++.|+++|++.... .+++... .+..++. .+.. +.-..+.++|++..+
T Consensus 227 efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v--EAQscYS-LgNt--ytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 227 EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV--EAQSCYS-LGNT--YTLLKEVQKAITYHQRH 301 (639)
T ss_pred HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH--HHHHHHH-hhhH--HHHHHHHHHHHHHHHHH
Confidence 99988888899999999999999999999999988654 2322211 1111111 1111 112355666666553
Q ss_pred -----HhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhh
Q psy9376 222 -----TIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSI 261 (320)
Q Consensus 222 -----~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~ 261 (320)
++.+...+-+.|+.++.-..++ +.-.+|+..-++.
T Consensus 302 LaIAqeL~DriGe~RacwSLgna~~al-----g~h~kAl~fae~h 341 (639)
T KOG1130|consen 302 LAIAQELEDRIGELRACWSLGNAFNAL-----GEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhh-----hhHHHHHHHHHHH
Confidence 3444555566777666555443 4555555554443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.42 E-value=3.5e-11 Score=112.69 Aligned_cols=212 Identities=16% Similarity=0.104 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|...|.++ +.++...|++++|.+.|.++......... ...+..+..+|.++... ++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-VEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHhCCCHHH
Confidence 68999999988876 45777899999999999998876432111 12345567788888777 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+.++++++++.+... .++..+|.+|... |++++|+..|+++....+. ....++..++.+|...|+++
T Consensus 199 A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~-----~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 199 ARALLKKALAADPQCV------RASILLGDLALAQ-GDYAAAIEALERVEEQDPE-----YLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHHHHHHhHCcCCH------HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHChh-----hHHHHHHHHHHHHHHcCCHH
Confidence 9999999999876543 3788999999997 9999999999999987443 23467788999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHH
Q psy9376 172 KAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGF 251 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~ 251 (320)
+|+..++++....++.... ..+..++...++.++|+..+.+....+|+......+.... +...+.++.
T Consensus 267 ~A~~~l~~~~~~~p~~~~~----------~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~--~~~~~~g~~ 334 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLL----------LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH--LAEAEEGRA 334 (389)
T ss_pred HHHHHHHHHHHhCCCchHH----------HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh--hhccCCccc
Confidence 9999999998776553321 1233334456778888888888777788776655443322 212235578
Q ss_pred HHHHHHHhhhcc
Q psy9376 252 TEAVKDYDSISR 263 (320)
Q Consensus 252 ~~Ai~~ye~~~~ 263 (320)
.+++..+++..+
T Consensus 335 ~~a~~~~~~~~~ 346 (389)
T PRK11788 335 KESLLLLRDLVG 346 (389)
T ss_pred hhHHHHHHHHHH
Confidence 888888887654
No 19
>KOG1155|consensus
Probab=99.42 E-value=1.9e-11 Score=111.76 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=112.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
||-|...+++++|+.+|++|+++++ .-..+|..+|.=|.++ +...|+++|++|+++.|..-+ +|+.|
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR------AWYGL 404 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNP------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR------AWYGL 404 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCc------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH------HHhhh
Confidence 6777788899999999999999953 3567899999999999 899999999999999997765 89999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
|..|... +.+.=|+-+|++|..+-|.+ ...+..+|++|.++++.++|+++|.++...
T Consensus 405 GQaYeim-~Mh~YaLyYfqkA~~~kPnD------sRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 405 GQAYEIM-KMHFYALYYFQKALELKPND------SRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHh-cchHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999997 99999999999999998776 358899999999999999999999999865
No 20
>KOG1126|consensus
Probab=99.41 E-value=2e-12 Score=122.63 Aligned_cols=233 Identities=15% Similarity=0.229 Sum_probs=178.8
Q ss_pred CHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHH--------------HcCC-----------
Q psy9376 29 KIDEAIECYT--------------RAANMFKMAKKWNNAGKAFVEAANLHM--------------KSGT----------- 69 (320)
Q Consensus 29 ~~~~A~~~y~--------------~ag~~~~~~g~~~~A~~~y~kA~~~~~--------------~~~~----------- 69 (320)
+..+|+..|. ++|..|..+++|++|..+|+.+-.+.+ ++.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566666665 458999999999999999999866532 1111
Q ss_pred ---hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 70 ---KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 70 ---~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
.....+.|--+|+||... +.+.|+.||++|+.+.+..-. +|..+|.=+... .++|.|..+|..|+.+.+
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY------ayTLlGhE~~~~-ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY------AYTLLGHESIAT-EEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch------hhhhcCChhhhh-HHHHhHHHHHHhhhcCCc
Confidence 112335567789999988 999999999999999987665 799999888876 899999999999999877
Q ss_pred ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHh---hhhHHHHHHHHHHHH
Q psy9376 146 GEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLC---IDVINAHNAIDRYKT 222 (320)
Q Consensus 146 ~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~d~~~~~~A~~~y~~ 222 (320)
.. -.+|..+|-+|.++++++.|.-+|+++..+.|.+.+ .+|++- ...+..++|+.-|++
T Consensus 487 rh------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv------------i~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 487 RH------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV------------ILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred hh------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh------------HHhhhhHHHHHhhhhhHHHHHHHH
Confidence 64 468999999999999999999999999998887765 355543 367889999999999
Q ss_pred hCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHH---HHHHhhcCCCCCchhhhchh
Q psy9376 223 IYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLL---RIKKQVGRTSLDSSLLKYSA 293 (320)
Q Consensus 223 ~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~---~i~~~~~~~~~~~~l~~~~~ 293 (320)
++..-+.+.-+++- ..++. ..+++++|+..+|++.++-|....|+- +|...++ ..+-.+++++.
T Consensus 549 A~~ld~kn~l~~~~~~~il~-----~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~--~~~~Al~~f~~ 616 (638)
T KOG1126|consen 549 AIHLDPKNPLCKYHRASILF-----SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG--NTDLALLHFSW 616 (638)
T ss_pred HHhcCCCCchhHHHHHHHHH-----hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc--cchHHHHhhHH
Confidence 87777777766655 33442 378999999999999998777776664 3334443 22335555544
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.41 E-value=4.7e-11 Score=122.06 Aligned_cols=149 Identities=17% Similarity=0.089 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH--------------Hc-----------
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHM--------------KS----------- 67 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~--------------~~----------- 67 (320)
+|++++|+..+.++ |.++...|++++|...|+++.+..+ ..
T Consensus 35 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~ 114 (899)
T TIGR02917 35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELP 114 (899)
T ss_pred cCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhc
Confidence 67888888888775 6778888999999998888875421 11
Q ss_pred ----CChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q psy9376 68 ----GTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAAT 142 (320)
Q Consensus 68 ----~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~ 142 (320)
..+...+..+...|.++... ++++|+..|++++...|.... ++..+|.++... |++++|+.++++++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~-~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 115 GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY------AKLGLAQLALAE-NRFDEARALIDEVLT 187 (899)
T ss_pred ccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------hHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 13344556677778888777 899999999999887765433 678888888887 889999998888888
Q ss_pred HhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 143 YFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 143 ~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..+.. ...+..+|.++...|++++|+..|+++....+.++
T Consensus 188 ~~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 188 ADPGN------VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred hCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence 76543 45677788888888888888888888877655543
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.40 E-value=4.8e-11 Score=126.47 Aligned_cols=156 Identities=15% Similarity=0.080 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHH--------HHHHHHHHHHH
Q psy9376 26 GGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHD--------AACNLLDAANC 83 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~--------aa~~~~~aa~~ 83 (320)
..|++++|+..|.++ |.++...|++++|+.+|++++++.+....... ........|.+
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 368999999999887 67888899999999999999988654322110 01112234566
Q ss_pred HhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH-H--------
Q psy9376 84 FKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS-A-------- 153 (320)
Q Consensus 84 y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~-a-------- 153 (320)
+... ++++|+.+|++++.+.|... .++..+|.+|... |++++|+.+|++++.+.+....... .
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~------~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDS------YAVLGLGDVAMAR-KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 6665 89999999999999877543 3788999999997 9999999999999987766421100 0
Q ss_pred ---------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 154 ---------------------------NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 154 ---------------------------~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
...+..+|.++...|++++|++.|+++....|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~ 495 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV 495 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 12234467777788999999999999988777654
No 23
>KOG1840|consensus
Probab=99.39 E-value=3.1e-10 Score=108.21 Aligned_cols=226 Identities=18% Similarity=0.193 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cC-ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-C-
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMK-SG-TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-G- 107 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~-~~-~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~- 107 (320)
...-+...+..|..+|+|+.|...+.+|+++..+ .| +....+.....+|.+|... ++.+|+..|++|+.+..+. |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3333444789999999999999999999999543 22 3345566677799999998 9999999999999999865 3
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
+....|.++.+||..|-+. |++++|.+++++|++|+... .++...+..+.+++.++...+++++|+.+|+++..+..
T Consensus 278 ~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 4678889999999999998 99999999999999999872 35667788999999999999999999999999987643
Q ss_pred hhhhhhc-chhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc------CcHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy9376 186 DSSLLKY-SAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ------DSREYKLLRILIEHIEEQNVDGFTEAVKDY 258 (320)
Q Consensus 186 ~~~~~~~-~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~------~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~y 258 (320)
+.+--.. +..++..+.+-+ +..++..++|.+-|+++..... .......+.++..++. +...+.+|-+.|
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l--~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~--~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAEL--YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE--ELKKYEEAEQLF 432 (508)
T ss_pred hhccccchHHHHHHHHHHHH--HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH--HhcccchHHHHH
Confidence 1111000 122232222322 2345666666666665433321 2344567788877774 567888888888
Q ss_pred hhhcc
Q psy9376 259 DSISR 263 (320)
Q Consensus 259 e~~~~ 263 (320)
+....
T Consensus 433 ~~~~~ 437 (508)
T KOG1840|consen 433 EEAKD 437 (508)
T ss_pred HHHHH
Confidence 88764
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.38 E-value=7.5e-11 Score=117.83 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHH----HHHHHHHHHhHhhccCCchHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEK----AVEHYEQAATYFKGEESNSSANKCLLKVAHH 163 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~----Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~ 163 (320)
++++|+..+++++.+.++. +.++..+|.+|... |++++ |+..|++++.+.|.. ..++..+|.+
T Consensus 227 ~~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~-G~~~eA~~~A~~~~~~Al~l~P~~------~~a~~~lg~~ 293 (656)
T PRK15174 227 KYQEAIQTGESALARGLDG------AALRRSLGLAYYQS-GRSREAKLQAAEHWRHALQFNSDN------VRIVTLYADA 293 (656)
T ss_pred CHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCchhhHHHHHHHHHHHHhhCCCC------HHHHHHHHHH
Confidence 4555555555555544322 23567788888886 88875 788888888877653 4677888888
Q ss_pred HHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHH
Q psy9376 164 AALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEH 242 (320)
Q Consensus 164 ~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a 242 (320)
+...|++++|+..++++....|+++.. ... +..++...++.++|+..|..+....|........ ..++
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a-------~~~--La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al-- 362 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYV-------RAM--YARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAAL-- 362 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHH--HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHH--
Confidence 888888888888888888776665432 111 2222335677777887777766555554332221 2222
Q ss_pred HHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 243 IEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 243 ~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
...|++++|+..|+++++++|-
T Consensus 363 ---~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 363 ---LQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred ---HHCCCHHHHHHHHHHHHHhChh
Confidence 1467888888888888877665
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.38 E-value=1.3e-10 Score=116.04 Aligned_cols=215 Identities=9% Similarity=0.000 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|++.|+++ |.++...|++++|+..|++++.+.+ ....++..++.++... ++++
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P------~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS------GNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCChHH
Confidence 57888888887776 5677778888888888888887632 1233455556666665 6666
Q ss_pred HHHHHHHHHHHHHH-------------cCChHHHHHH---------------HHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 92 AIDCLSKAIVIYTD-------------MGRFTMAAKH---------------HQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 92 A~~~~~kA~~l~~~-------------~~~~~~aa~~---------------~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
|+..+++++...+. .|++..+... ...++.++... |++++|+..|.+++..
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhc
Confidence 76666655544332 1222222111 12234455554 6666666666666665
Q ss_pred hhccCCchHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHH
Q psy9376 144 FKGEESNSSANKCLLKVAHHAALLQNYNK----AIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDR 219 (320)
Q Consensus 144 ~~~~~~~~~a~~~~~~la~~~~~~g~y~~----Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~ 219 (320)
.+.. ..++..+|.++...|++++ |+..|+++....|+.... +. .+..+....++.++|+..
T Consensus 242 ~p~~------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a-------~~--~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 242 GLDG------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI-------VT--LYADALIRTGQNEKAIPL 306 (656)
T ss_pred CCCC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH-------HH--HHHHHHHHCCCHHHHHHH
Confidence 4432 3456666777777777664 566677666655543321 11 111122234555566666
Q ss_pred HHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhH
Q psy9376 220 YKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWY 268 (320)
Q Consensus 220 y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~ 268 (320)
++++....|........ ..++ ...+++++|+..|+++.+.+|..
T Consensus 307 l~~al~l~P~~~~a~~~La~~l-----~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 307 LQQSLATHPDLPYVRAMYARAL-----RQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHhCCCCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCccc
Confidence 65555555554443322 2222 13567777777777777655544
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=6.3e-11 Score=121.96 Aligned_cols=219 Identities=11% Similarity=-0.048 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHH
Q psy9376 28 NKIDEAIECYTRA-------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAI 93 (320)
Q Consensus 28 ~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~ 93 (320)
+++++|+..|.++ |..+...|++++|+..|+++.... +.. ..+..+|.++... ++++|+
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~-----p~~--~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD-----MSN--EDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-----CCc--HHHHHHHHHHHHCCCHHHHH
Confidence 4556677766654 334456788888888888764431 111 1234555665555 778888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy9376 94 DCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKA 173 (320)
Q Consensus 94 ~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~A 173 (320)
.++++++.+.+... ..+..++...... |++++|+.+|++++++.|. ...+.++|.++.++|++++|
T Consensus 563 ~~l~qAL~l~P~~~------~l~~~La~~l~~~-Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 563 RWLQQAEQRGLGDN------ALYWWLHAQRYIP-GQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHHHHhcCCccH------HHHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHH
Confidence 88888877654332 2344555555554 8888888888888877663 34677888888888888888
Q ss_pred HHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHH
Q psy9376 174 IQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTE 253 (320)
Q Consensus 174 i~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~ 253 (320)
+..|+++....|+++.. +.+.+.+. .+.++.++|++.|..+....|...+.......+ + ...+++++
T Consensus 629 ~~~l~~AL~l~Pd~~~a-------~~nLG~aL--~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a--l--~~lGd~~e 695 (987)
T PRK09782 629 VSDLRAALELEPNNSNY-------QAALGYAL--WDSGDIAQSREMLERAHKGLPDDPALIRQLAYV--N--QRLDDMAA 695 (987)
T ss_pred HHHHHHHHHhCCCCHHH-------HHHHHHHH--HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--H--HHCCCHHH
Confidence 88888888777665532 22222221 245666777777776666666665544322211 1 24678888
Q ss_pred HHHHHhhhcchhhhHHHHHHHHHHhhc
Q psy9376 254 AVKDYDSISRLDQWYTTVLLRIKKQVG 280 (320)
Q Consensus 254 Ai~~ye~~~~ld~~~~~~l~~i~~~~~ 280 (320)
|+..|+++++++|.+..|...+.+...
T Consensus 696 A~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 888888888888877777766655444
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.35 E-value=8.6e-11 Score=120.11 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|...|+++ +.++...|++++|...|.++....+ .....+..++.+|... ++++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP------QEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchhHHHHHHHHHHHCCCHHH
Confidence 45666666666543 5666666677777766666655421 1122333344444443 4555
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+..+++++...+... .++..+|.+|... |++++|+.+|+++++..+.. ...+..+|.++...|+++
T Consensus 586 A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 586 ALAILNEAADAAPDSP------EAWLMLGRAQLAA-GDLNKAVSSFKKLLALQPDS------ALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHHHHHHcCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHH
Confidence 5555554443332211 1344444444443 45555555554444443321 123444444444444444
Q ss_pred HHHHHHHHHHHh
Q psy9376 172 KAIQIYEEVGRT 183 (320)
Q Consensus 172 ~Ai~~y~~~~~~ 183 (320)
+|+..|+++...
T Consensus 653 ~A~~~~~~~~~~ 664 (899)
T TIGR02917 653 KAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHHhc
Confidence 444444444443
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.35 E-value=1.8e-10 Score=122.17 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=111.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH------HH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM------AA 113 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~------aa 113 (320)
|..+...|++++|+..|++++.+.+ ....++..+|.+|... ++++|+.+|++++++.++...... .+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANP------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 6778889999999999999999853 2356788899999888 999999999999999887654211 11
Q ss_pred H--HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 114 K--HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 114 ~--~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
. .....|.++... |++++|+.+|++++.+.+.. ..++..+|.++...|++++|++.|+++....+++.
T Consensus 350 ~~~~~~~~g~~~~~~-g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 350 RYWLLIQQGDAALKA-NNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred hHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 1 234568888887 99999999999999997764 45788999999999999999999999998766654
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=1.4e-10 Score=104.96 Aligned_cols=200 Identities=10% Similarity=-0.037 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChH
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFT 110 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~ 110 (320)
.-...|..-|.+|...|++++|...|.+++++.+ ..+.+|..+|.++... ++++|+..|++++++.|++..
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~-- 133 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRP------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-- 133 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--
Confidence 3344556668999999999999999999999843 2467899999999988 999999999999999887655
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
++.++|.++... |++++|++.|++++.+.+.... ...+ ..+....+++++|+..+.+....... +.
T Consensus 134 ----a~~~lg~~l~~~-g~~~eA~~~~~~al~~~P~~~~----~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~-~~- 199 (296)
T PRK11189 134 ----AYLNRGIALYYG-GRYELAQDDLLAFYQDDPNDPY----RALW---LYLAESKLDPKQAKENLKQRYEKLDK-EQ- 199 (296)
T ss_pred ----HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHH----HHHH---HHHHHccCCHHHHHHHHHHHHhhCCc-cc-
Confidence 799999999997 9999999999999998877531 1111 12344568999999999876643211 11
Q ss_pred hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc----CcHHHHH-HHHHHHHHHhcCHhHHHHHHHHHhhhcchh
Q psy9376 191 KYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ----DSREYKL-LRILIEHIEEQNVDGFTEAVKDYDSISRLD 265 (320)
Q Consensus 191 ~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~----~s~e~~~-l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld 265 (320)
| . -++..+..+.....++++.+.+..+.-+ ...+..+ ++.+. ...|++++|+..|++++.++
T Consensus 200 -~------~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~-----~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 200 -W------G-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYY-----LSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -c------H-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhC
Confidence 1 1 1233333311112245555543322211 1112222 23332 25789999999999999865
Q ss_pred h
Q psy9376 266 Q 266 (320)
Q Consensus 266 ~ 266 (320)
|
T Consensus 267 ~ 267 (296)
T PRK11189 267 V 267 (296)
T ss_pred C
Confidence 4
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.32 E-value=2.5e-10 Score=117.64 Aligned_cols=209 Identities=11% Similarity=0.007 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-CCHHHH
Q psy9376 27 GNKIDEAIECYTRA-------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK-TDNEAA 92 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~-~~~~eA 92 (320)
.|++++|+..|.++ |..+...|++++|..+|.+++... +.. ...+..++..... .++++|
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-----P~~-~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-----LGD-NALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-HHHHHHHHHHHHhCCCHHHH
Confidence 68999999999866 345677899999999999998763 221 2223334433333 499999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 93 IDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
+.++++|+.+.|. +..+.++|.++... |++++|+.+|++++.+.|.. ..++.++|.++...|++++
T Consensus 596 l~~~~~AL~l~P~-------~~a~~~LA~~l~~l-G~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 596 LNDLTRSLNIAPS-------ANAYVARATIYRQR-HNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHHHHHhCCC-------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHH
Confidence 9999999988873 24789999999997 99999999999999998875 4689999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHH
Q psy9376 173 AIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGF 251 (320)
Q Consensus 173 Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~ 251 (320)
|+++|+++....|+++.. +.+.+.+. ...++.++|...|+++...-|.+..-... ..+.. -...|
T Consensus 662 Ai~~l~~AL~l~P~~~~a-------~~nLA~al--~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~-----~~~~~ 727 (987)
T PRK09782 662 SREMLERAHKGLPDDPAL-------IRQLAYVN--QRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ-----QRFNF 727 (987)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHH--HHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH-----HHHHH
Confidence 999999999988776543 33334433 34566677777777666665655443333 33332 24679
Q ss_pred HHHHHHHhhhcchhhhHH
Q psy9376 252 TEAVKDYDSISRLDQWYT 269 (320)
Q Consensus 252 ~~Ai~~ye~~~~ld~~~~ 269 (320)
..|.+.|.....++|--.
T Consensus 728 ~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 728 RRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHhhcCccch
Confidence 999999999988887766
No 31
>KOG1155|consensus
Probab=99.32 E-value=9.4e-11 Score=107.28 Aligned_cols=138 Identities=19% Similarity=0.225 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
++++++|+.+|.+| |.-|...++...|+++|++|+++.+ ..-.+|..+|++|.-+ -+.=
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p------~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP------RDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc------hhHHHHhhhhHHHHHhcchHH
Confidence 57899999999998 6677888999999999999999953 3567899999999998 6778
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+-+|++|..+-|...+ .|.-+|++|++. ++.++||.||.+|+..-..+ +..+..+|.+|.++++++
T Consensus 417 aLyYfqkA~~~kPnDsR------lw~aLG~CY~kl-~~~~eAiKCykrai~~~dte------~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSR------LWVALGECYEKL-NRLEEAIKCYKRAILLGDTE------GSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHHHhcCCCchH------HHHHHHHHHHHh-ccHHHHHHHHHHHHhccccc------hHHHHHHHHHHHHHHhHH
Confidence 99999999999886655 899999999996 99999999999999875553 568999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy9376 172 KAIQIYEEVGRT 183 (320)
Q Consensus 172 ~Ai~~y~~~~~~ 183 (320)
+|..+|++-...
T Consensus 484 eAa~~yek~v~~ 495 (559)
T KOG1155|consen 484 EAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 32
>KOG2003|consensus
Probab=99.28 E-value=2.7e-10 Score=104.14 Aligned_cols=197 Identities=19% Similarity=0.173 Sum_probs=153.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy9376 43 MFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAE 121 (320)
Q Consensus 43 ~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~ 121 (320)
+-...||+++|++.|.+|+. +.....+++.++|..+... +.++|++||-+...+...+-. ++..+++
T Consensus 499 ~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e------vl~qian 566 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE------VLVQIAN 566 (840)
T ss_pred eeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH------HHHHHHH
Confidence 33446899999999998874 4556788999999999998 999999999999998876644 8999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh-hhhhcchhHhHHH
Q psy9376 122 IYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS-SLLKYSAKEYFFR 200 (320)
Q Consensus 122 ~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~-~~~~~~~~~~~~~ 200 (320)
+|+.. .++.+||++|.++..+.|.+ ..++.++|++|-+.|+-..|.+++-..-+..|.+ ....|
T Consensus 567 iye~l-ed~aqaie~~~q~~slip~d------p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew-------- 631 (840)
T KOG2003|consen 567 IYELL-EDPAQAIELLMQANSLIPND------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW-------- 631 (840)
T ss_pred HHHHh-hCHHHHHHHHHHhcccCCCC------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH--------
Confidence 99996 99999999999999999886 4689999999999999999999988777665543 22222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHH
Q psy9376 201 AALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVL 272 (320)
Q Consensus 201 a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l 272 (320)
+.-.+.+..-.+++++.++.+.-.-|....-+++..-+ ..-.|.|++|+..|..+.+-=|-...+|
T Consensus 632 --l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc----~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 632 --LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASC----FRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred --HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 22234577778899999988755555544444432211 2357999999999999998666555554
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=2.1e-10 Score=112.60 Aligned_cols=216 Identities=13% Similarity=0.021 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC----------CHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANM-FK-MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT----------DNEAAIDC 95 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~-~~-~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~----------~~~eA~~~ 95 (320)
++++.+ .+|-++... ++ ..+++++|+.+|++|+++. |. .+.++..+|.+|... ++++|+..
T Consensus 254 ~~~da~-~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-----P~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~ 326 (553)
T PRK12370 254 NSIDST-MVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-----PN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEH 326 (553)
T ss_pred CChHHH-HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-----Cc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 344444 455444322 22 2356789999999999884 32 355667777665422 47899999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHH
Q psy9376 96 LSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQ 175 (320)
Q Consensus 96 ~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~ 175 (320)
+++|+++.|++.. ++..+|.++... |++++|+.+|++|+++.|.. ..++..+|.++...|++++|+.
T Consensus 327 ~~~Al~ldP~~~~------a~~~lg~~~~~~-g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 327 AIKATELDHNNPQ------ALGLLGLINTIH-SEYIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHHHhcCCCCHH------HHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999887655 788999999997 99999999999999998774 5678999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCc-cCcHHHHH-HHHHHHHHHhcCHhHHHH
Q psy9376 176 IYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAF-QDSREYKL-LRILIEHIEEQNVDGFTE 253 (320)
Q Consensus 176 ~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f-~~s~e~~~-l~~l~~a~~~~d~~~~~~ 253 (320)
.|+++....|..+... +..+... ...++.++|+..+++..... |....... +..++ ...|++++
T Consensus 394 ~~~~Al~l~P~~~~~~------~~~~~~~---~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l-----~~~G~~~e 459 (553)
T PRK12370 394 TINECLKLDPTRAAAG------ITKLWIT---YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL-----SLKGKHEL 459 (553)
T ss_pred HHHHHHhcCCCChhhH------HHHHHHH---HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH-----HhCCCHHH
Confidence 9999998877654210 1111111 12355677777776654332 33333332 23332 24799999
Q ss_pred HHHHHhhhcchhhhHHHHHHHHHH
Q psy9376 254 AVKDYDSISRLDQWYTTVLLRIKK 277 (320)
Q Consensus 254 Ai~~ye~~~~ld~~~~~~l~~i~~ 277 (320)
|+..++++...+|........+..
T Consensus 460 A~~~~~~~~~~~~~~~~~~~~l~~ 483 (553)
T PRK12370 460 ARKLTKEISTQEITGLIAVNLLYA 483 (553)
T ss_pred HHHHHHHhhhccchhHHHHHHHHH
Confidence 999999988866655544444443
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=8.8e-10 Score=94.33 Aligned_cols=142 Identities=18% Similarity=0.122 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|++.+.++ |.++...|++++|...|+++++..+. ....+.+.|.++... ++++
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcccHHH
Confidence 67899999888876 66788899999999999999987431 235677888888887 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+..+++++.... .......+..+|.++... |++++|+.++.+++...+.. ...+..+|.++...|+++
T Consensus 118 A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 118 AMQQFEQAIEDPL----YPQPARSLENAGLCALKA-GDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHHHHHhccc----cccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHH
Confidence 9999999987432 222344688899999997 99999999999999987653 457788999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy9376 172 KAIQIYEEVGRTSL 185 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~ 185 (320)
+|+..++++....+
T Consensus 187 ~A~~~~~~~~~~~~ 200 (234)
T TIGR02521 187 DARAYLERYQQTYN 200 (234)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987643
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=1.8e-09 Score=91.02 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=139.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~ 106 (320)
-+..+|.+...+.|.-|...||+..|...+++|++.. | ....++.-++.+|... +.+.|-+.|++|+.+.|++
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-----P-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-----P-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 4678999999999999999999999999999999984 3 3566777888999888 8999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
|+ ++.|-|-.+-.+ |+|++|..+|++|+.- |.- .....++.++|.|..+.|+.+.|.++|+++....++
T Consensus 103 Gd------VLNNYG~FLC~q-g~~~eA~q~F~~Al~~-P~Y---~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 103 GD------VLNNYGAFLCAQ-GRPEEAMQQFERALAD-PAY---GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred cc------hhhhhhHHHHhC-CChHHHHHHHHHHHhC-CCC---CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 99 899999998887 9999999999999973 332 234679999999999999999999999999998887
Q ss_pred hhhhhcchhHhHHHHHHHHH---hhhhHHHHHHHHHHHHh
Q psy9376 187 SSLLKYSAKEYFFRAALCHL---CIDVINAHNAIDRYKTI 223 (320)
Q Consensus 187 ~~~~~~~~~~~~~~a~~~~l---~~d~~~~~~A~~~y~~~ 223 (320)
.+... ..+.++ ..+...++--++.|.+-
T Consensus 172 ~~~~~---------l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 172 FPPAL---------LELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred CChHH---------HHHHHHHHhcccchHHHHHHHHHHhc
Confidence 66431 112222 12556666666666543
No 36
>KOG0547|consensus
Probab=99.21 E-value=1.3e-09 Score=100.50 Aligned_cols=210 Identities=16% Similarity=0.169 Sum_probs=146.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
|-+-+.+|-...+..+-...|.+|.++.+. -...|..-|+++.-+ ++++|+.-|++|+.+.|++-- .
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~------~ 430 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY------A 430 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH------H
Confidence 334466777778888888999999888432 344677777887776 899999999999999988765 6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAK 195 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~ 195 (320)
+..++-+.-++ ++++++...|+.+..-||.- .+++.-.|+++..++++++|++.|+++....+....+.-++-
T Consensus 431 ~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 431 YIQLCCALYRQ-HKIAESMKTFEEAKKKFPNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 78888766665 89999999999999999984 679999999999999999999999999987655333222222
Q ss_pred HhHHHHHHH-HHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHH
Q psy9376 196 EYFFRAALC-HLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVL 272 (320)
Q Consensus 196 ~~~~~a~~~-~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l 272 (320)
.+...+.+. +...|...+.+-+....+++|.-.. .+..+..+- + +.++.++||+.|++++.|-..+..++
T Consensus 504 plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~--A~~tlaq~~--l---Q~~~i~eAielFEksa~lArt~~E~~ 574 (606)
T KOG0547|consen 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ--AYETLAQFE--L---QRGKIDEAIELFEKSAQLARTESEMV 574 (606)
T ss_pred hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH--HHHHHHHHH--H---HHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 222222211 1222445555555554444443222 222233322 2 47899999999999988766555554
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.21 E-value=2e-10 Score=103.09 Aligned_cols=216 Identities=18% Similarity=0.151 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHH
Q psy9376 27 GNKIDEAIECYTR----------------AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~----------------ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~ 90 (320)
.|++++|.+.+.+ .|.+....++++.|+.+|++.+.... .....+..++.++...+++
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~------~~~~~~~~l~~l~~~~~~~ 94 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK------ANPQDYERLIQLLQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccc
Confidence 4666666666643 24555668899999999999887632 2344566666665455899
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|+++++++.+..++. ..+.....++... ++++++...++++...-+ ......++...|.++.+.|++
T Consensus 95 ~A~~~~~~~~~~~~~~-------~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 95 EALKLAEKAYERDGDP-------RYLLSALQLYYRL-GDYDEAEELLEKLEELPA----APDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp ------------------------------H-HHHT-T-HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHCCHH
T ss_pred cccccccccccccccc-------chhhHHHHHHHHH-hHHHHHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCCH
Confidence 9999998876544322 2566777788886 999999999998775322 123467899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhh---HHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcC
Q psy9376 171 NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDV---INAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQN 247 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~---~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d 247 (320)
++|++.|+++....|+++... ..+.++..+. ..+.+++..+....+.-+.-. ..+.... ..
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~---------~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~--~~la~~~-----~~ 226 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDAR---------NALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW--DALAAAY-----LQ 226 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHH---------HHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC--HHHHHHH-----HH
T ss_pred HHHHHHHHHHHHcCCCCHHHH---------HHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH--HHHHHHh-----cc
Confidence 999999999999988766431 1233333443 344567887776653333211 1122222 13
Q ss_pred HhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 248 VDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 248 ~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
.+++++|+..|+++.+.+|-.+.++...-
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYA 255 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc
Confidence 68999999999999985444444444333
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.6e-09 Score=98.02 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~ 126 (320)
+..+.++..+.+++.-.. -++...+..|.+.|.+|... ++++|+..|++|+++.|++. .++..+|.++...
T Consensus 40 ~~~e~~i~~~~~~l~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASRD--LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA------DAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHcccc--CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHC
Confidence 455777777777764321 24556688899999999887 99999999999999987654 3899999999997
Q ss_pred cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 127 CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 127 l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
|++++|++.|++++++.|.. ..++.++|.++...|++++|++.|+++....|+.+
T Consensus 112 -g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 112 -GNFDAAYEAFDSVLELDPTY------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred -CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999998774 46889999999999999999999999998877655
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.17 E-value=1.6e-09 Score=94.46 Aligned_cols=188 Identities=16% Similarity=0.040 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
..+..++.+...|..+...|+++.|+..|++++..++. ......++...|.++... ++++|+..+++++..+|+..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 45566667777788899999999999999999887642 223456788889999888 99999999999999998665
Q ss_pred ChHHHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHhHhhccCCchHHH-----------HHHHHHHHHHHHccC
Q psy9376 108 RFTMAAKHHQTIAEIYETD-------CVDQEKAVEHYEQAATYFKGEESNSSAN-----------KCLLKVAHHAALLQN 169 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~-------l~~~~~Ai~~y~kA~~~~~~~~~~~~a~-----------~~~~~la~~~~~~g~ 169 (320)
.. ..++..+|.++... .|++++|++.|++++..+|.......+. .....+|.++...|+
T Consensus 105 ~~---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 105 DA---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA 181 (235)
T ss_pred ch---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 43 33577788877652 1679999999999999988864322111 112467888999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc
Q psy9376 170 YNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ 228 (320)
Q Consensus 170 y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~ 228 (320)
+.+|+..|+++....++.+.. ...++..+. .+...++.++|.+.++.+...||
T Consensus 182 ~~~A~~~~~~al~~~p~~~~~----~~a~~~l~~--~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 182 YVAAINRFETVVENYPDTPAT----EEALARLVE--AYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred hHHHHHHHHHHHHHCCCCcch----HHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999998876654321 111222222 22345666677776666655554
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=7.1e-09 Score=87.47 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=132.2
Q ss_pred ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 69 TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 69 ~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+...++....++|.-|... ++..|...+++|+++.|+.-. +|.-+|.+|... |+.+.|-+.|++|+.+.+..
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~------a~~~~A~~Yq~~-Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL------AHLVRAHYYQKL-GENDLADESYRKALSLAPNN 102 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------HHHHHHHHHHHc-CChhhHHHHHHHHHhcCCCc
Confidence 4567888999999999988 999999999999999998765 899999999997 99999999999999999987
Q ss_pred CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCC
Q psy9376 148 ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPA 226 (320)
Q Consensus 148 ~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~ 226 (320)
| +++.+.|..++.+|+|++|...|+++..... -+.-..-|-++++|.+-. +...++.-+..-.++++.
T Consensus 103 G------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 103 G------DVLNNYGAFLCAQGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred c------chhhhhhHHHHhCCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 5 6999999999999999999999999985310 011123367789998755 445555556666667888
Q ss_pred ccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhc
Q psy9376 227 FQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSIS 262 (320)
Q Consensus 227 f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~ 262 (320)
++.+..-.. ... + +.++|..|-..++...
T Consensus 172 ~~~~~l~~a-~~~---~---~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 172 FPPALLELA-RLH---Y---KAGDYAPARLYLERYQ 200 (250)
T ss_pred CChHHHHHH-HHH---H---hcccchHHHHHHHHHH
Confidence 887654332 111 2 3577888877776554
No 41
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=3.4e-09 Score=92.42 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=118.9
Q ss_pred CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--
Q psy9376 27 GNKIDEAIECYTRA-----------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-- 87 (320)
.|++++|+..|+++ |.++...|++++|+..|+++++.++... ....++...|.++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---DADYAYYLRGLSNYNQID 122 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---chHHHHHHHHHHHHHhcc
Confidence 56777777777644 5677889999999999999999876332 2345677778887652
Q ss_pred -------CHHHHHHHHHHHHHHHHHcCChHHHH-----------HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 88 -------DNEAAIDCLSKAIVIYTDMGRFTMAA-----------KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 88 -------~~~eA~~~~~kA~~l~~~~~~~~~aa-----------~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
++++|++.+++++..+|.+.....+- .....+|.+|... |++.+|+..|+++++.++...
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~- 200 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR-GAYVAAINRFETVVENYPDTP- 200 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHCCCCc-
Confidence 58899999999999988775543221 2234788889997 999999999999999988753
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 150 NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 150 ~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
...+.+..+|.++..+|++++|+.+++.+....
T Consensus 201 --~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 201 --ATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred --chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 246788999999999999999999999887644
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=5.5e-08 Score=85.86 Aligned_cols=245 Identities=16% Similarity=0.107 Sum_probs=161.3
Q ss_pred HHHhhhhhhccc--cCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH---------------
Q psy9376 13 AAALLRVVFITK--VGGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAA--------------- 61 (320)
Q Consensus 13 ~~k~~~~~~~~~--~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~--------------- 61 (320)
+.++=++.|.|+ .-++..|+|++.|-.. |++|+..|..|.|+...+-..
T Consensus 32 a~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 32 ANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred HhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 444545555443 1267889999998654 889999999888887554432
Q ss_pred ----------------HHHHHcCC-hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy9376 62 ----------------NLHMKSGT-KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIY 123 (320)
Q Consensus 62 ----------------~~~~~~~~-~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y 123 (320)
+++..+-+ +..+-.+...+..+|... ++++||+..++...+-++.. .-..|..+.+++..+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-RVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-hhHHHHHHHHHHHHH
Confidence 22223333 444555666666777777 78888888888777765543 357788999999988
Q ss_pred HhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHH
Q psy9376 124 ETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAAL 203 (320)
Q Consensus 124 ~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (320)
... .+.++|+.++.+|+...+.. ..+-..+|++....|+|.+|++.++.+....+. |...++
T Consensus 191 ~~~-~~~d~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~-----------yl~evl 252 (389)
T COG2956 191 LAS-SDVDRARELLKKALQADKKC------VRASIILGRVELAKGDYQKAVEALERVLEQNPE-----------YLSEVL 252 (389)
T ss_pred hhh-hhHHHHHHHHHHHHhhCccc------eehhhhhhHHHHhccchHHHHHHHHHHHHhChH-----------HHHHHH
Confidence 887 89999999999999987763 345677999999999999999999999864332 111112
Q ss_pred HHH---hhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhc
Q psy9376 204 CHL---CIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVG 280 (320)
Q Consensus 204 ~~l---~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~ 280 (320)
-.| |...++..+.........+.+++..--..+.+++.. .+-.+.|....-+-++-.|.+.-+.--|.=.+.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~-----~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIEL-----QEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHH-----hhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc
Confidence 122 235677777777777777777766554555665542 333444444433333445665555444443443
Q ss_pred C
Q psy9376 281 R 281 (320)
Q Consensus 281 ~ 281 (320)
+
T Consensus 328 d 328 (389)
T COG2956 328 D 328 (389)
T ss_pred c
Confidence 3
No 43
>KOG1585|consensus
Probab=99.09 E-value=4.6e-09 Score=89.20 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~ 108 (320)
.+--|+..|++|+.+.+....+.++.++|+||..+|...|.+.-++.++..+|.+....+|++|+..|++++.+..+.++
T Consensus 66 slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr 145 (308)
T KOG1585|consen 66 SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR 145 (308)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch
Confidence 44456777788888999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
...+-..+...+.++... ..+++|...+.+-..+.............+....-++.-..+|..|-.+|+..-
T Consensus 146 ~~ma~el~gk~sr~lVrl-~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 146 DQMAFELYGKCSRVLVRL-EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HHHHHHHHHHhhhHhhhh-HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 999999999999999996 999999999988887776655555555556555566666779999999999754
No 44
>KOG0548|consensus
Probab=99.08 E-value=7.6e-08 Score=89.96 Aligned_cols=225 Identities=17% Similarity=0.221 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CChH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-GRFT 110 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~~~~ 110 (320)
...-....|+......++..|+.+|.+++++.. ....+.+.+.+|.+. .+.+.+....+|++.-.+. -++.
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~-------~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELAT-------DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhh-------hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 344456678888889999999999999999963 334455555555555 5555555555555554433 2344
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC---C-----------------chHHHHHHHHHHHHHHHccCH
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE---S-----------------NSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~---~-----------------~~~a~~~~~~la~~~~~~g~y 170 (320)
..+.++..+|..|... ++++.|+.+|++++.-++... + ....+.-...-|.-+...|+|
T Consensus 296 lIak~~~r~g~a~~k~-~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKR-EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHhhhhhhhH-HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 5778888899999998 999999999999986665510 0 001122233347778889999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHH---HhCCCccCcHHHHHHHHHHHHHHhcC
Q psy9376 171 NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYK---TIYPAFQDSREYKLLRILIEHIEEQN 247 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~---~~~~~f~~s~e~~~l~~l~~a~~~~d 247 (320)
..|+..|++++...|+++.+ +.+.+.|++. .+....|+.... ++.|.|....-.+ +..+. -
T Consensus 375 ~~Av~~YteAIkr~P~Da~l-------YsNRAac~~k--L~~~~~aL~Da~~~ieL~p~~~kgy~RK--g~al~-----~ 438 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARL-------YSNRAACYLK--LGEYPEALKDAKKCIELDPNFIKAYLRK--GAALR-----A 438 (539)
T ss_pred HHHHHHHHHHHhcCCchhHH-------HHHHHHHHHH--HhhHHHHHHHHHHHHhcCchHHHHHHHH--HHHHH-----H
Confidence 99999999999888877654 5566777764 344444444443 3444444322222 11121 2
Q ss_pred HhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcC
Q psy9376 248 VDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGR 281 (320)
Q Consensus 248 ~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~ 281 (320)
..+|++|++.|++..++||-...++..+++-++.
T Consensus 439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 6899999999999999999999999999988874
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=2.2e-08 Score=98.36 Aligned_cols=176 Identities=10% Similarity=-0.029 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHH--------------HHHHH---------HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFK---------MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANC 83 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~---------~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~ 83 (320)
.+++++|+.+|++| |.++. ..+++++|...+++|+++. | ..+.++..+|.+
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-----P-~~~~a~~~lg~~ 347 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-----H-NNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHH
Confidence 45778899988887 22222 2245899999999999884 3 245667788888
Q ss_pred HhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHH
Q psy9376 84 FKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAH 162 (320)
Q Consensus 84 y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~ 162 (320)
+... ++++|+.+|++|+++.|.+.. ++..+|.++... |++++|+.++++++++.|... ......+.
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~~~------a~~~lg~~l~~~-G~~~eAi~~~~~Al~l~P~~~------~~~~~~~~ 414 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPISAD------IKYYYGWNLFMA-GQLEEALQTINECLKLDPTRA------AAGITKLW 414 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCh------hhHHHHHH
Confidence 8776 999999999999999876644 789999999997 999999999999999988742 23334555
Q ss_pred HHHHccCHHHHHHHHHHHHHhh-hhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCc
Q psy9376 163 HAALLQNYNKAIQIYEEVGRTS-LDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDS 230 (320)
Q Consensus 163 ~~~~~g~y~~Ai~~y~~~~~~~-~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s 230 (320)
++...|++++|+..++++.... ++.+.. +...+.++ ...++.++|...+.+..+..+..
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~-------~~~la~~l--~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPIL-------LSMQVMFL--SLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHH-------HHHHHHHH--HhCCCHHHHHHHHHHhhhccchh
Confidence 6777899999999999987653 333321 22223332 24577777777777766665543
No 46
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.04 E-value=2.4e-09 Score=86.37 Aligned_cols=112 Identities=10% Similarity=0.056 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHH
Q psy9376 55 KAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKA 133 (320)
Q Consensus 55 ~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~A 133 (320)
..|++++++. |.. +...|.++... ++++|+.+|++++.+.|.+.. ++..+|.++... |++++|
T Consensus 14 ~~~~~al~~~-----p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------a~~~lg~~~~~~-g~~~~A 77 (144)
T PRK15359 14 DILKQLLSVD-----PET----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR------AHIALAGTWMML-KEYTTA 77 (144)
T ss_pred HHHHHHHHcC-----HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHH-hhHHHH
Confidence 5677777774 321 33456666665 999999999999998877654 899999999997 999999
Q ss_pred HHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 134 VEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 134 i~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
+.+|++++.+.+.. ...+.++|.++..+|++++|+..|+++....++++
T Consensus 78 ~~~y~~Al~l~p~~------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 78 INFYGHALMLDASH------PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHHHHhcCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999987775 56899999999999999999999999998877654
No 47
>KOG2002|consensus
Probab=99.03 E-value=8.4e-08 Score=95.03 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=165.6
Q ss_pred CCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC---
Q psy9376 26 GGNKIDEAIECYTRA---------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--- 87 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--- 87 (320)
.++||-.|+.+|..+ |.+|-.+|+.+.|+..|++++++.+ ..+.++.-+|.+-...
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp------~~v~alv~L~~~~l~~~d~ 249 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP------TCVSALVALGEVDLNFNDS 249 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh------hhHHHHHHHHHHHHHccch
Confidence 478999999999886 6778888899999999999998843 3455555555443332
Q ss_pred -CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH
Q psy9376 88 -DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL 166 (320)
Q Consensus 88 -~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~ 166 (320)
.+..++..+.+|-.+.+.+.. ++..++..|--. |+|+.+..+.+-|+..- .+....++.+..+|..|..
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~------~l~~LAn~fyfK-~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPV------ALNHLANHFYFK-KDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcH------HHHHHHHHHhhc-ccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHh
Confidence 467777777777776666555 788888777766 89999888888877653 2234456778889999999
Q ss_pred ccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHH-HHHHHHHHHHh
Q psy9376 167 LQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYK-LLRILIEHIEE 245 (320)
Q Consensus 167 ~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~-~l~~l~~a~~~ 245 (320)
+|+|++|..+|.++....+++-++. -.|+.+++.-.++.+.+.-.++......|+..+-. +++.|.... .
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~--------~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~-~ 390 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLP--------LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS-A 390 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCcccc--------ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh-h
Confidence 9999999999998887655542221 12444555545666667777776666777766553 446666433 2
Q ss_pred cCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCch
Q psy9376 246 QNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSS 287 (320)
Q Consensus 246 ~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~ 287 (320)
..++.-+.|.....++.+..|-....++.+.+.++.+++.-.
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s 432 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS 432 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH
Confidence 356778888888888888887777777777776665555333
No 48
>KOG1173|consensus
Probab=99.03 E-value=1.7e-08 Score=94.79 Aligned_cols=223 Identities=14% Similarity=0.148 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
..|+.+|- .|.-|...|++++|..+|.||..+.+ .-+.+|.-.|..|.-. ..++|+.+|..|..+++...-|
T Consensus 310 ~~a~sW~a-Vg~YYl~i~k~seARry~SKat~lD~------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 310 SKALSWFA-VGCYYLMIGKYSEARRYFSKATTLDP------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred CCCcchhh-HHHHHHHhcCcHHHHHHHHHHhhcCc------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 34444443 37777888999999999999998843 2345677778888777 8899999999999999987764
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--hhhh
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT--SLDS 187 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~--~~~~ 187 (320)
..-+|.-|... ++++-|-.+|.+|+.+.|.+. -++..+|.+....+.|.+|+.+|+.+... ...+
T Consensus 383 ------~LYlgmey~~t-~n~kLAe~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 383 ------SLYLGMEYMRT-NNLKLAEKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred ------HHHHHHHHHHh-ccHHHHHHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 66788888887 999999999999999999874 47788999999999999999999998732 2222
Q ss_pred hhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 188 SLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 188 ~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
....|. ..+.+ +.++++.++..+.|+..|++....-|.+.....--.++.+. .|.++.|+..|.+++-++|.
T Consensus 450 e~~~w~--p~~~N--LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----lgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 450 EKIFWE--PTLNN--LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL----LGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred cccchh--HHHHh--HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCc
Confidence 222232 12222 44556788999999999999877777777666555555444 68999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy9376 268 YTTVLLRIKKQVGR 281 (320)
Q Consensus 268 ~~~~l~~i~~~~~~ 281 (320)
+..+=.-++..|++
T Consensus 522 n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 522 NIFISELLKLAIED 535 (611)
T ss_pred cHHHHHHHHHHHHh
Confidence 97777777777776
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.02 E-value=5.2e-08 Score=99.33 Aligned_cols=211 Identities=13% Similarity=0.134 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|++.|.++ |..+...|++++|+..|++++.+.+ . ...++..++.++... ++++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-----~-~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-----Q-NDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHCCCHHH
Confidence 56888888887765 5678889999999999999998842 2 234456777887777 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+..+++++...|++. . +..+|.++... |++++|+..|++++.+.|.. ..++..+|.++...|..+
T Consensus 102 A~~~l~~~l~~~P~~~------~-~~~la~~l~~~-g~~~~Al~~l~~al~~~P~~------~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 102 ALVKAKQLVSGAPDKA------N-LLALAYVYKRA-GRHWDELRAMTQALPRAPQT------QQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHHHHHhCCCCH------H-HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChH
Confidence 9999999998876543 2 77889999997 99999999999999998875 456677899999999999
Q ss_pred HHHHHHHHHHHhhhhh-hhhhcchhHhHHHHHHHHHhh-----h---hHHHHHHHHHHHHhCCC---ccCcHH-H-HHHH
Q psy9376 172 KAIQIYEEVGRTSLDS-SLLKYSAKEYFFRAALCHLCI-----D---VINAHNAIDRYKTIYPA---FQDSRE-Y-KLLR 237 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~-----d---~~~~~~A~~~y~~~~~~---f~~s~e-~-~~l~ 237 (320)
+|++.++++.. .|+. ..+.+. -.....++.. + ...+++|++.|+.+... .|+... . ....
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~-----~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEAD-----AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHH-----HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999987664 2221 000000 0011122221 1 12347788877766533 333221 1 1111
Q ss_pred HHHHHHHhcCHhHHHHHHHHHhhhcchh
Q psy9376 238 ILIEHIEEQNVDGFTEAVKDYDSISRLD 265 (320)
Q Consensus 238 ~l~~a~~~~d~~~~~~Ai~~ye~~~~ld 265 (320)
+.+.++. ..+++++|+..|+++.+.+
T Consensus 242 d~l~~Ll--~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 242 DRLGALL--ARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHH--HhhhHHHHHHHHHHhhccC
Confidence 1111121 3589999999999998864
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.01 E-value=3.9e-09 Score=94.67 Aligned_cols=204 Identities=20% Similarity=0.177 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRAA--------------NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag--------------~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.+++++|...|++.- .. ...+++++|+..++++.+-. + ....+..+..++... ++++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---~----~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD---G----DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccc---c----ccchhhHHHHHHHHHhHHHH
Confidence 568888888887761 22 35678888888877765432 2 234455556666666 8999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
+.+.++++.. .......+.+|...|.++... |++++|+.+|++|+++.|.+ ..+...++.++...|+++
T Consensus 129 ~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 129 AEELLEKLEE----LPAAPDSARFWLALAEIYEQL-GDPDKALRDYRKALELDPDD------PDARNALAWLLIDMGDYD 197 (280)
T ss_dssp HHHHHHHHHH-----T---T-HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCChH
Confidence 9999888763 233345567899999999997 99999999999999999985 467888999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhH
Q psy9376 172 KAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDG 250 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~ 250 (320)
++.+++.......++++.. +. .+...+...++.++|+..++++....|.+...... .+++ ...|+
T Consensus 198 ~~~~~l~~~~~~~~~~~~~-------~~--~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l-----~~~g~ 263 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDL-------WD--ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL-----EQAGR 263 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCH-------CH--HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH-----T----
T ss_pred HHHHHHHHHHHHCcCHHHH-------HH--HHHHHhcccccccccccccccccccccccccccccccccc-----ccccc
Confidence 9888888777665444432 11 11222235688999999999887776766554433 3333 25799
Q ss_pred HHHHHHHHhhhcc
Q psy9376 251 FTEAVKDYDSISR 263 (320)
Q Consensus 251 ~~~Ai~~ye~~~~ 263 (320)
+++|+.++.++.+
T Consensus 264 ~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 264 KDEALRLRRQALR 276 (280)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 9999999998865
No 51
>KOG1173|consensus
Probab=99.01 E-value=1e-08 Score=96.14 Aligned_cols=182 Identities=18% Similarity=0.145 Sum_probs=143.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.+++++|..+|-++ |..|...|..++|..||..|.++.+...-|. .-+|.-|-.. +..-
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~------LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS------LYLGMEYMRTNNLKL 398 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH------HHHHHHHHHhccHHH
Confidence 68999999999998 7888999999999999999999987554442 3346666665 8899
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH-HHHHHHHHHHHHHHccCH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS-ANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~-a~~~~~~la~~~~~~g~y 170 (320)
|-++|.+|..+.|...- ++.++|.+.-.. +.+.+|+.+|+.++...+...+... ....+.+||-+++++++|
T Consensus 399 Ae~Ff~~A~ai~P~Dpl------v~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPL------VLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred HHHHHHHHHhcCCCcch------hhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 99999999999987654 789999887765 8999999999999977777654442 456789999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCc
Q psy9376 171 NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDS 230 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s 230 (320)
++||..|++++...+.+..+ .. ++..++.-.+..++|++.|.+..-.-|..
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~-------~a--sig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDAST-------HA--SIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHHHHcCCCchhH-------HH--HHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99999999999887765432 11 22233344688889999998765544443
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.01 E-value=6.1e-08 Score=91.42 Aligned_cols=239 Identities=13% Similarity=0.050 Sum_probs=163.7
Q ss_pred HHHhhhhhhccccCCCCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 13 AAALLRVVFITKVGGNKIDEAIECYTRAA--------------NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLL 78 (320)
Q Consensus 13 ~~k~~~~~~~~~~~~~~~~~A~~~y~~ag--------------~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~ 78 (320)
+.+.....+..++ .||++.|.....++. ..-...|+++.|..+|.++.+..+ ........
T Consensus 84 ~~~~~~~gl~a~~-eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~-----~~~~~~~l 157 (398)
T PRK10747 84 ARKQTEQALLKLA-EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAD-----NDQLPVEI 157 (398)
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----cchHHHHH
Confidence 4454554444443 589988888877653 222567999999999999987632 21111122
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC---------
Q psy9376 79 DAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE--------- 148 (320)
Q Consensus 79 ~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~--------- 148 (320)
.++.++... ++++|...++++.+..|++.. ++.-++.+|... |++++|++.+.+.........
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~------al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPE------VLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQ 230 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 235666665 999999999999998887765 788888999997 999999977766653211100
Q ss_pred ---------------------------CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHH
Q psy9376 149 ---------------------------SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRA 201 (320)
Q Consensus 149 ---------------------------~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a 201 (320)
...........++..+...|+.++|.+..+++....++..+.
T Consensus 231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~----------- 299 (398)
T PRK10747 231 AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV----------- 299 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-----------
Confidence 000112344556888899999999999999998754433221
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHH--HHHHHHHh
Q psy9376 202 ALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTT--VLLRIKKQ 278 (320)
Q Consensus 202 ~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~--~l~~i~~~ 278 (320)
..+.....++..+++...++....+|++.+..+. +.++ + ..+++.+|...|+++.+++|.... .+-.+.+.
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~--~---~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL--M---KHGEWQEASLAFRAALKQRPDAYDYAWLADALDR 373 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH--H---HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 1111113467788888888888999999887655 5555 3 468999999999999999999887 44555555
Q ss_pred hcC
Q psy9376 279 VGR 281 (320)
Q Consensus 279 ~~~ 281 (320)
.+.
T Consensus 374 ~g~ 376 (398)
T PRK10747 374 LHK 376 (398)
T ss_pred cCC
Confidence 554
No 53
>KOG2002|consensus
Probab=98.96 E-value=1.7e-07 Score=92.94 Aligned_cols=215 Identities=13% Similarity=0.078 Sum_probs=136.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-----DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-----~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
|..|-..|++..|..||++.++.++. .-+...-+|..|... ..+.|..+..++.+..+... ++
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~------~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~------~a 416 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPN------NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS------EA 416 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcc------hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH------HH
Confidence 34444455555555555555444321 112223333333332 34566666666666654443 37
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh---hhhhhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL---DSSLLKY 192 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~---~~~~~~~ 192 (320)
|..+|.+|+. +++..++.+|..|++++...+.. --.+++.++|.++..+|++.+|..+|.++..... +....+-
T Consensus 417 ~l~laql~e~--~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 417 WLELAQLLEQ--TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHh--cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 9999999997 68988999999999998887766 5578999999999999999999999999976511 1111000
Q ss_pred chhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHH
Q psy9376 193 SAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVL 272 (320)
Q Consensus 193 ~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l 272 (320)
..-..-++.+.|. +...+...|-+.|.++...+|+=.++.+-.. +. ..+.+...+|+..+..+..+|.-+++++
T Consensus 494 ~~lt~~YNlarl~--E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~-~m---a~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 494 TNLTLKYNLARLL--EELHDTEVAEEMYKSILKEHPGYIDAYLRLG-CM---ARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred chhHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-HH---HHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 0011112233332 3456667777778777777776555543211 11 2256788899999999998888888887
Q ss_pred HHHH
Q psy9376 273 LRIK 276 (320)
Q Consensus 273 ~~i~ 276 (320)
.-+.
T Consensus 568 sl~G 571 (1018)
T KOG2002|consen 568 SLLG 571 (1018)
T ss_pred HHHH
Confidence 5554
No 54
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.92 E-value=1.7e-08 Score=72.23 Aligned_cols=74 Identities=26% Similarity=0.324 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFT-MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 71 ~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~-~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
+..+.++.++|.+|... ++++|+++|++|+++....|+.. ..+.++.++|.+|... |++++|+++|++|+++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL-GDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhc
Confidence 35688899999999998 99999999999999987888754 5799999999999997 999999999999999875
No 55
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=1.9e-08 Score=81.09 Aligned_cols=108 Identities=8% Similarity=-0.051 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
..|..+...|++++|+.+|.+++.+. | ....++...|.++... ++++|+.+|++|+.+.|.... .+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~------a~~ 96 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-----P-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE------PVY 96 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH------HHH
Confidence 45788889999999999999999873 3 3567888999998888 999999999999999887766 899
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHH
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA 165 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~ 165 (320)
++|.++... |++++|+..|++|+.+.+.. ...+...|.+..
T Consensus 97 ~lg~~l~~~-g~~~eAi~~~~~Al~~~p~~------~~~~~~~~~~~~ 137 (144)
T PRK15359 97 QTGVCLKMM-GEPGLAREAFQTAIKMSYAD------ASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHH
Confidence 999999997 99999999999999998875 334445554443
No 56
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.90 E-value=1.7e-08 Score=72.33 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS-SANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~-~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
..+.++.++|.+|... |++++|+++|++|+++.+..++.. ..+.++.++|.++...|++++|+++|+++...
T Consensus 3 ~~a~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYREL-GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677999999999997 999999999999999977777654 46999999999999999999999999999864
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.89 E-value=2e-07 Score=95.11 Aligned_cols=192 Identities=9% Similarity=-0.001 Sum_probs=136.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy9376 43 MFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAE 121 (320)
Q Consensus 43 ~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~ 121 (320)
+....|++++|+..|.++..+. ...+..+..+|.++... ++++|+.++++++.+.|.+.. ++..+|.
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~------a~~~la~ 91 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD------YQRGLIL 91 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHH
Confidence 4455799999999999987742 23456688889999888 999999999999999877644 6789999
Q ss_pred HHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHH
Q psy9376 122 IYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRA 201 (320)
Q Consensus 122 ~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a 201 (320)
++... |++++|+..+++++...|.. .. +..+|.++...|++++|+..|+++....|+++... ..
T Consensus 92 ~l~~~-g~~~eA~~~l~~~l~~~P~~------~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~-------~~- 155 (765)
T PRK10049 92 TLADA-GQYDEALVKAKQLVSGAPDK------AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYP-------TE- 155 (765)
T ss_pred HHHHC-CCHHHHHHHHHHHHHhCCCC------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-------HH-
Confidence 99997 99999999999999998875 34 78899999999999999999999999888765431 11
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhCCCccCcH------HHHHHHHHHHHHHhcCHhHH---HHHHHHHhhhcch
Q psy9376 202 ALCHLCIDVINAHNAIDRYKTIYPAFQDSR------EYKLLRILIEHIEEQNVDGF---TEAVKDYDSISRL 264 (320)
Q Consensus 202 ~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~------e~~~l~~l~~a~~~~d~~~~---~~Ai~~ye~~~~l 264 (320)
+..+....+..++|+..+..+.. .|... ....+..+.......+.+++ ++|+..|+.+.+.
T Consensus 156 -la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 156 -YVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred -HHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 11222233555566666655433 33210 11111111111111234556 8899999988753
No 58
>KOG1125|consensus
Probab=98.86 E-value=1.4e-07 Score=88.86 Aligned_cols=199 Identities=15% Similarity=0.109 Sum_probs=148.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
.|..+...|+..+|+-+|+.|+.- .++.+++|..+|.+.-+. +-..||..+++|+++.|.|-. ++..
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkq------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle------aLma 358 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQ------DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE------ALMA 358 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhh------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH------HHHH
Confidence 366666779999999999999876 346789999999998887 678899999999999998876 8999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhcc---------CC---------------------------c-hHHHHHHHHHH
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGE---------ES---------------------------N-SSANKCLLKVA 161 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~---------~~---------------------------~-~~a~~~~~~la 161 (320)
||..|.+. |.-.+|+.++.+=+...+.. +. + ..-.++..-||
T Consensus 359 LAVSytNe-g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 359 LAVSYTNE-GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred HHHHHhhh-hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 99999998 88888888876654221100 00 0 01245666788
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCCCccCcHHHHHHHHH
Q psy9376 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI--DVINAHNAIDRYKTIYPAFQDSREYKLLRIL 239 (320)
Q Consensus 162 ~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l 239 (320)
.+|.-.|+|++|+++|+.++...|++..+ |.+.|-.. +. ...++-.|+.+..++-|.|-.++....
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~l-------WNRLGAtL-AN~~~s~EAIsAY~rALqLqP~yVR~RyNlg---- 505 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLL-------WNRLGATL-ANGNRSEEAISAYNRALQLQPGYVRVRYNLG---- 505 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHH-------HHHhhHHh-cCCcccHHHHHHHHHHHhcCCCeeeeehhhh----
Confidence 88999999999999999999888876654 55544432 22 345555555555677888888877653
Q ss_pred HHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 240 IEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 240 ~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
+...+.|.|.+|++.|=.++.+.+
T Consensus 506 ---IS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 506 ---ISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred ---hhhhhhhhHHHHHHHHHHHHHhhh
Confidence 333478999999999988876433
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=2.9e-08 Score=84.41 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=112.7
Q ss_pred cCCCCHHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q psy9376 25 VGGNKIDEAIECYTRAAN---MFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAI 100 (320)
Q Consensus 25 ~~~~~~~~A~~~y~~ag~---~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~ 100 (320)
|..|+++........... .|...++.++++..+++++... + ..+..|..+|.+|... ++++|+.+|++|+
T Consensus 27 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~-----P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al 100 (198)
T PRK10370 27 LLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRAN-----P-QNSEQWALLGEYYLWRNDYDNALLAYRQAL 100 (198)
T ss_pred HHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345777775444422111 1113577789999999988874 2 3466899999999888 9999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHH-HHhccCC--HHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy9376 101 VIYTDMGRFTMAAKHHQTIAEI-YETDCVD--QEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIY 177 (320)
Q Consensus 101 ~l~~~~~~~~~aa~~~~~la~~-y~~~l~~--~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y 177 (320)
.+.+++.. .+..+|.+ +... |+ +++|+..+++++...+.. ..++..+|..+...|+|++|+.+|
T Consensus 101 ~l~P~~~~------~~~~lA~aL~~~~-g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 101 QLRGENAE------LYAALATVLYYQA-GQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HhCCCCHH------HHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99987765 79999986 4665 77 599999999999998885 468999999999999999999999
Q ss_pred HHHHHhhh
Q psy9376 178 EEVGRTSL 185 (320)
Q Consensus 178 ~~~~~~~~ 185 (320)
+++....+
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99987643
No 60
>KOG2076|consensus
Probab=98.83 E-value=1.4e-06 Score=86.04 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|.+.+.++ |.+|...||..++..++..|+.+.++ .- ..|...+....+. ++.+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-----d~-e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-----DY-ELWKRLADLSEQLGNINQ 225 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-----Ch-HHHHHHHHHHHhcccHHH
Confidence 45666666555443 56666666666666666666655321 11 3455555555555 5677
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
|.-||.+|+...|.+-. ...+-+.+|.+. |++..|++.|.+++.+.+
T Consensus 226 A~~cy~rAI~~~p~n~~------~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWE------LIYERSSLYQKT-GDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHhcCCcchH------HHHHHHHHHHHh-ChHHHHHHHHHHHHhhCC
Confidence 77777777776666543 456666666665 777777777766666555
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.82 E-value=4e-07 Score=92.49 Aligned_cols=172 Identities=10% Similarity=-0.038 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChH
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFT 110 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~ 110 (320)
.+-..|.+ +.+....|+++.|++.|+++++.. |......+ .++.++... +.++|+.++++++ .+.+...
T Consensus 33 ~~~~~y~~-aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~~~- 102 (822)
T PRK14574 33 MADTQYDS-LIIRARAGDTAPVLDYLQEESKAG-----PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNISS- 102 (822)
T ss_pred chhHHHHH-HHHHHhCCCHHHHHHHHHHHHhhC-----ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCH-
Confidence 33344444 344444666666666666666663 22221122 333444333 5666666666666 3333331
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
..+..+|.+|... |++++|++.|+++++..|.. ..++..++.++...|++++|++.++++....+....
T Consensus 103 ---~~llalA~ly~~~-gdyd~Aiely~kaL~~dP~n------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~- 171 (822)
T PRK14574 103 ---RGLASAARAYRNE-KRWDQALALWQSSLKKDPTN------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN- 171 (822)
T ss_pred ---HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-
Confidence 1233335566665 66666666666666666554 234445566666666666666666666554433111
Q ss_pred hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH
Q psy9376 191 KYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREY 233 (320)
Q Consensus 191 ~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~ 233 (320)
. .++.+++...++..+|++.|+++...+|...+.
T Consensus 172 --------~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 172 --------Y-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEV 205 (822)
T ss_pred --------H-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH
Confidence 0 122333323344434566666555555555544
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.80 E-value=1.1e-06 Score=82.88 Aligned_cols=145 Identities=13% Similarity=0.043 Sum_probs=107.9
Q ss_pred hhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q psy9376 20 VFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANC-FKKTDNEAAIDCLSK 98 (320)
Q Consensus 20 ~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~-y~~~~~~eA~~~~~k 98 (320)
.+.+|++..+...|-..+.+ |.+....|||+.|.....++.+. . +.....+..++.. ....+++.|..++.+
T Consensus 71 ~~~~~~~~rr~~~~~~~~~~-gl~a~~eGd~~~A~k~l~~~~~~----~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~ 143 (398)
T PRK10747 71 RTRGWFVGRKRRRARKQTEQ-ALLKLAEGDYQQVEKLMTRNADH----A--EQPVVNYLLAAEAAQQRGDEARANQHLER 143 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhc----c--cchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455544466677776665 66666689999999666664442 1 1234556666777 444599999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy9376 99 AIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYE 178 (320)
Q Consensus 99 A~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~ 178 (320)
|.+..+++.-. .....+.++... |++++|+..+++..+..|+. ..++..++.+|...|++++|++++.
T Consensus 144 A~~~~~~~~~~-----~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~~------~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 144 AAELADNDQLP-----VEITRVRIQLAR-NENHAARHGVDKLLEVAPRH------PEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred HHhcCCcchHH-----HHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 98766654321 223447888887 99999999999999998875 4688889999999999999999999
Q ss_pred HHHHh
Q psy9376 179 EVGRT 183 (320)
Q Consensus 179 ~~~~~ 183 (320)
+..+.
T Consensus 212 ~l~k~ 216 (398)
T PRK10747 212 SMAKA 216 (398)
T ss_pred HHHHc
Confidence 98865
No 63
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.78 E-value=6.4e-08 Score=76.71 Aligned_cols=115 Identities=11% Similarity=0.072 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHH
Q psy9376 55 KAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKA 133 (320)
Q Consensus 55 ~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~A 133 (320)
+.|.+++... +.........|.++... ++++|++.+++++.+.+.+.. .+..+|.++... |++++|
T Consensus 4 ~~~~~~l~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~-~~~~~A 70 (135)
T TIGR02552 4 ATLKDLLGLD------SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR------YWLGLAACCQML-KEYEEA 70 (135)
T ss_pred hhHHHHHcCC------hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHH-HHHHHH
Confidence 3455555542 23445677777887777 999999999999988766543 799999999997 999999
Q ss_pred HHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 134 VEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 134 i~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
+.+|++++.+.+.. ...+..+|.++...|++++|+..|+++....++++
T Consensus 71 ~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 71 IDAYALAAALDPDD------PRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 99999999987664 56888999999999999999999999998776654
No 64
>KOG1129|consensus
Probab=98.76 E-value=8.8e-08 Score=84.73 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=144.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 38 TRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 38 ~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
.+.|.+|..+|.+.+|-..++.+++-.+ ..+.|..++.+|... +|..|+..+.+-++.+|.+=- .+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT------~l 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT------YL 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh------hh
Confidence 3458999999999999999999987652 356788889999999 899999999999888875533 68
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhH
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKE 196 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~ 196 (320)
..++.+++.. +++++|+++|..+++..+.+ .+..--+|.-|.-.++++-|+.+|+++...+..++.
T Consensus 294 ~g~ARi~eam-~~~~~a~~lYk~vlk~~~~n------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------- 359 (478)
T KOG1129|consen 294 LGQARIHEAM-EQQEDALQLYKLVLKLHPIN------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------- 359 (478)
T ss_pred hhhHHHHHHH-HhHHHHHHHHHHHHhcCCcc------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-------
Confidence 8899999997 99999999999999986653 344555677788889999999999999987776654
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccC-cHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHH
Q psy9376 197 YFFRAALCHLCIDVINAHNAIDRYKTIYPAFQD-SREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRI 275 (320)
Q Consensus 197 ~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~-s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i 275 (320)
.|.+.++|-++..+ .+-++..++.+...-.. .....+-.+|. .-.-+.|++.-|-.+|+-++..||.+-..+.++
T Consensus 360 Lf~NigLCC~yaqQ--~D~~L~sf~RAlstat~~~~aaDvWYNlg--~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQ--IDLVLPSFQRALSTATQPGQAADVWYNLG--FVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred HHhhHHHHHHhhcc--hhhhHHHHHHHHhhccCcchhhhhhhccc--eeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence 37888999887522 12223333222111111 00001111111 001135677777777777777666666665544
Q ss_pred H
Q psy9376 276 K 276 (320)
Q Consensus 276 ~ 276 (320)
.
T Consensus 436 a 436 (478)
T KOG1129|consen 436 A 436 (478)
T ss_pred H
Confidence 3
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.76 E-value=5e-07 Score=91.77 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 72 DAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
.....|.++-..++..+++.|+..++++++..|.+.. ....+..++... |+.++|+.++++++ .+....
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~------av~dll~l~~~~-G~~~~A~~~~eka~--~p~n~~-- 101 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG------QVDDWLQIAGWA-GRDQEVIDVYERYQ--SSMNIS-- 101 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh------hHHHHHHHHHHc-CCcHHHHHHHHHhc--cCCCCC--
Confidence 3444555555555555777777777777777665531 112555555564 77777777777777 222211
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcH
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSR 231 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~ 231 (320)
...+..+|.++...|+|++|+++|+++....|+++.. + .++..++.+.++.++|++.+.++.+.++...
T Consensus 102 --~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l--~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 102 --SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDL-------I--SGMIMTQADAGRGGVVLKQATELAERDPTVQ 170 (822)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------H--HHHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence 2334444667777777777777777777776665432 1 1334444466777777777777777777655
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhc
Q psy9376 232 EYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKY 291 (320)
Q Consensus 232 e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~ 291 (320)
.+..+.-+. . ..++..+|+..|+++++++|.++.++......+.......+-++.
T Consensus 171 ~~l~layL~----~-~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 171 NYMTLSYLN----R-ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred HHHHHHHHH----H-hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 553332222 1 134554577777777777777777776666665555444444333
No 66
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.73 E-value=2.3e-06 Score=68.94 Aligned_cols=137 Identities=17% Similarity=0.109 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
.-++|...|..+-..+. .+++..+...+++...-+ ++..-+..+...+|.++... ++++|+..|++++.-. .
T Consensus 7 ~~~~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~ 79 (145)
T PF09976_consen 7 QAEQASALYEQALQALQ-AGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---P 79 (145)
T ss_pred HHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---C
Confidence 34677888888766664 889998877777766544 34444566677777777776 9999999999998743 4
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
++.....+...+|.++... |++++|+..++.. .............|+++...|++++|+..|+++
T Consensus 80 d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQ-GQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4555667788999999997 9999999998651 122234567888999999999999999999986
No 67
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.72 E-value=2.3e-07 Score=74.67 Aligned_cols=97 Identities=13% Similarity=-0.019 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHH
Q psy9376 75 CNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSAN 154 (320)
Q Consensus 75 ~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~ 154 (320)
..|.-+...|...++++|...|+-.+.+.+.+-+ .|.+||.+++.. |++++||.+|.+|+.+-++. .
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~------y~~gLG~~~Q~~-g~~~~AI~aY~~A~~L~~dd------p 103 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD------YWFRLGECCQAQ-KHWGEAIYAYGRAAQIKIDA------P 103 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------HHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCC------c
Confidence 3444444555555999999999999999887766 799999999997 99999999999999998765 4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
.++.++|.++...|+.+.|.+.|+.+..++
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 588899999999999999999999998876
No 68
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=1.6e-06 Score=79.07 Aligned_cols=211 Identities=9% Similarity=0.037 Sum_probs=146.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA~~~~~kA~~l~~ 104 (320)
+++|.+|..+|... +...+.+++|+..+.+++.+. | ....+|..-+.++... ++++++.++.+++...+
T Consensus 33 ~~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~ln-----P-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 33 TPEFREAMDYFRAV---YASDERSPRALDLTADVIRLN-----P-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred CHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHC-----c-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 67899999988764 566889999999999999984 3 3455777778888877 57999999999999988
Q ss_pred HcCChHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 105 DMGRFTMAAKHHQTIAEIYETDCVDQ--EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 105 ~~~~~~~aa~~~~~la~~y~~~l~~~--~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
++-. +|...+.++... |+. +++++++.+++++.+.+ ..++...+.++..+|+|++|++.+++++.
T Consensus 104 knyq------aW~~R~~~l~~l-~~~~~~~el~~~~kal~~dpkN------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 104 KNYQ------IWHHRRWLAEKL-GPDAANKELEFTRKILSLDAKN------YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred cchH------HhHHHHHHHHHc-CchhhHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7766 799999888885 764 78899999999988774 56899999999999999999999999998
Q ss_pred hhhhhhhhhcchhHhHHHHHHHHHh--hhh-HHHHHHHHHHHHh---CCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHH
Q psy9376 183 TSLDSSLLKYSAKEYFFRAALCHLC--IDV-INAHNAIDRYKTI---YPAFQDSREYKLLRILIEHIEEQNVDGFTEAVK 256 (320)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~l~--~d~-~~~~~A~~~y~~~---~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~ 256 (320)
..+.+.. .|..+++. +.++- .+. ...++.++...++ .|.......+ +..++... ........+|+.
T Consensus 171 ~d~~N~s-AW~~R~~v----l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Y--l~~ll~~~-~~~l~~~~~~~~ 242 (320)
T PLN02789 171 EDVRNNS-AWNQRYFV----ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRY--LRGLFKDD-KEALVSDPEVSS 242 (320)
T ss_pred HCCCchh-HHHHHHHH----HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHH--HHHHHhcC-CcccccchhHHH
Confidence 8766543 24333321 11110 001 1122344444343 3333333322 23333210 012345667888
Q ss_pred HHhhhcchhhh
Q psy9376 257 DYDSISRLDQW 267 (320)
Q Consensus 257 ~ye~~~~ld~~ 267 (320)
.+.++.+.+|-
T Consensus 243 ~~~~~~~~~~~ 253 (320)
T PLN02789 243 VCLEVLSKDSN 253 (320)
T ss_pred HHHHhhcccCC
Confidence 88887775443
No 69
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.69 E-value=6.7e-07 Score=73.92 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~ 106 (320)
..-+.....+...|..+...|++++|+..|.+++.+.. ++...+.++.++|.++... ++++|+.++++|+.+.+..
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 34456677777789999999999999999999998853 3344567899999999998 9999999999999997766
Q ss_pred CC-hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 107 GR-FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 107 ~~-~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+. ....+.++.++|..+... |++++|+..+.+++.+++.
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQ-GDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHc-ccHHHHHHHHHHHHHHHHH
Confidence 54 233444555555555576 8998888888887777655
No 70
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=1e-06 Score=89.08 Aligned_cols=261 Identities=13% Similarity=0.068 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
++.+.+|.. .....+...+++++|+.....+++..+ .....|.-.|.++.+. +++++... +++.+.+.
T Consensus 27 ~p~n~~a~~---~Li~~~~~~~~~deai~i~~~~l~~~P------~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 27 SLSKFKELD---DLIDAYKSENLTDEAKDICEEHLKEHK------KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred CcchHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCC------cceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 344444444 456778889999999999887777632 2334444444454444 33333333 34443333
Q ss_pred cC-------------ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 106 MG-------------RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 106 ~~-------------~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
.. +....-.++..+|.+|.+. |+.++|...|++++++-+++ ..++.++|..|... +.++
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~-g~~~ka~~~yer~L~~D~~n------~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKL-NENKKLKGVWERLVKADRDN------PEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-hHHH
Confidence 32 1111123899999999997 99999999999999998664 68999999999999 9999
Q ss_pred HHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHH
Q psy9376 173 AIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFT 252 (320)
Q Consensus 173 Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~ 252 (320)
|++++.++.....+..... ....+|.. +|.. ++.+.+.-+.--+.+...-...+-..++..+...+ ...++|+
T Consensus 168 A~~m~~KAV~~~i~~kq~~-~~~e~W~k--~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y--~~~~~~~ 240 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYV-GIEEIWSK--LVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY--KALEDWD 240 (906)
T ss_pred HHHHHHHHHHHHHhhhcch-HHHHHHHH--HHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH--hhhhhhh
Confidence 9999999987755443210 11222221 1111 22221111111111111101122223345555444 3678999
Q ss_pred HHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhchhHHHhHHHHHHHHhHHHHHHHHHhh
Q psy9376 253 EAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAYTQYK 317 (320)
Q Consensus 253 ~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~y~~~a~~c~~~~~~~~~~~~~~ 317 (320)
+++.++..++.+||-+...+..|-+.+-....+-+++ .+|....+|=.--..+..++.+|.
T Consensus 241 ~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~----ee~l~~s~l~~~~~~~~~~i~~fe 301 (906)
T PRK14720 241 EVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLL----EDYLKMSDIGNNRKPVKDCIADFE 301 (906)
T ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchH----HHHHHHhccccCCccHHHHHHHHH
Confidence 9999999999999999999888887777666664443 355555554433223334444443
No 71
>KOG0553|consensus
Probab=98.68 E-value=1.5e-07 Score=82.43 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+..-|+.+...++|.+|+..|.+|+++. | ..+..|.+-+.+|.++ .++.|++-.+.|+.+.+.... +
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-----P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk------a 151 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELD-----P-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK------A 151 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC-----C-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH------H
Confidence 3344666666667777777777777663 2 2455666666666666 667777777777766665443 6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
|..+|.+|..+ |++++|++.|++|+++.|+.
T Consensus 152 y~RLG~A~~~~-gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 152 YGRLGLAYLAL-GKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHHHHHHHHcc-CcHHHHHHHHHhhhccCCCc
Confidence 77777777765 77777777777777776664
No 72
>KOG1174|consensus
Probab=98.68 E-value=2.8e-06 Score=77.47 Aligned_cols=221 Identities=14% Similarity=0.068 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------cC---------------ChHHHHHHHHHHHHHHh
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMK--------------SG---------------TKHDAACNLLDAANCFK 85 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~--------------~~---------------~~~~aa~~~~~aa~~y~ 85 (320)
.++...|.++...|++++|+.-|+++..+.+- -| +...++..+..+...|.
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh
Confidence 34445567777777777777777776544211 00 00112222223333344
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHH
Q psy9376 86 KTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA 165 (320)
Q Consensus 86 ~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~ 165 (320)
..++..|+.+-+|++.+.+.+-. .+.-.|.++... |++++|+-.|..|..+-|. ..++|..+-.+|.
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~------alilKG~lL~~~-~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHE------ALILKGRLLIAL-ERHTQAVIAFRTAQMLAPY------RLEIYRGLFHSYL 379 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccch------HHHhccHHHHhc-cchHHHHHHHHHHHhcchh------hHHHHHHHHHHHH
Confidence 44889999999999998877665 788999999997 9999999999999998765 3689999999999
Q ss_pred HccCHHHHHHHHHHHHHhhhhh---------------hhhhcchhHhHHH----------H--HHHHHhhhhHHHHHHHH
Q psy9376 166 LLQNYNKAIQIYEEVGRTSLDS---------------SLLKYSAKEYFFR----------A--ALCHLCIDVINAHNAID 218 (320)
Q Consensus 166 ~~g~y~~Ai~~y~~~~~~~~~~---------------~~~~~~~~~~~~~----------a--~~~~l~~d~~~~~~A~~ 218 (320)
..|+..+|.-.-+.+.+..+++ +..+..+|.++-. + .+..|+.-.+....++.
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 9999999876555544332222 1111112221111 0 01111222233344444
Q ss_pred HHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHH
Q psy9376 219 RYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLL 273 (320)
Q Consensus 219 ~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~ 273 (320)
-.+...-.|++..-...+++++.| .+.+++|+..|..++++||-..+.+-
T Consensus 460 LLe~~L~~~~D~~LH~~Lgd~~~A-----~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 460 LLEKHLIIFPDVNLHNHLGDIMRA-----QNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHHHhhccccHHHHHHHHHHHH-----hhhHHHHHHHHHHHHhcCccchHHHH
Confidence 444445566666666667777755 47899999999999999999988863
No 73
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.68 E-value=4e-07 Score=73.31 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
++-++..-..|..+...|++++|...|+-...+ .+..+..|.++|.|++.. ++++|+.+|.+|+.+.+++..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~- 104 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ- 104 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch-
Confidence 666777777788888999999999999999888 345788999999999998 999999999999999987766
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
.+.++|.+|... |+.+.|...|+.|+.+..
T Consensus 105 -----~~~~ag~c~L~l-G~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 -----APWAAAECYLAC-DNVCYAIKALKAVVRICG 134 (157)
T ss_pred -----HHHHHHHHHHHc-CCHHHHHHHHHHHHHHhc
Confidence 799999999996 999999999999999884
No 74
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=2.2e-05 Score=81.71 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHH-------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q psy9376 27 GNKIDEAIECYTRA-------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~ 87 (320)
.|++++|...+.++ |..+...|+++.|...+.+++...+..+.....+.++..+|.++...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 57888888877765 34456689999999999999999999998888888888888888777
Q ss_pred -CHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 88 -DNEAAIDCLSKAIVIYTDMGRF--TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 88 -~~~eA~~~~~kA~~l~~~~~~~--~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
++++|..++++++.+....+.. ...+..+..+|.++... |++++|...+.+++.+.+..+. .....++..+|.++
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~ 622 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-ARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKIS 622 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHH
Confidence 9999999999999998876542 22334466788888887 9999999999999998876553 33456778899999
Q ss_pred HHccCHHHHHHHHHHHHHh
Q psy9376 165 ALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 165 ~~~g~y~~Ai~~y~~~~~~ 183 (320)
...|++++|...+.++...
T Consensus 623 ~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 623 LARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 75
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.67 E-value=3.2e-06 Score=80.04 Aligned_cols=233 Identities=11% Similarity=-0.000 Sum_probs=148.1
Q ss_pred HHHhhhhhhccccCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 13 AAALLRVVFITKVGGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLL 78 (320)
Q Consensus 13 ~~k~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~ 78 (320)
+.+.+...+..++ .||++.|.....++ |......|+++.|...+.++.+..+ +..-. ...
T Consensus 84 ~~~~~~~glla~~-~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p---~~~l~--~~~ 157 (409)
T TIGR00540 84 AQKQTEEALLKLA-EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG---NDNIL--VEI 157 (409)
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---cCchH--HHH
Confidence 4444444444433 58888888887765 4566778999999999999876542 22111 122
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC---------
Q psy9376 79 DAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE--------- 148 (320)
Q Consensus 79 ~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~--------- 148 (320)
..+.++... ++++|...+++..+..|++.. ++.-++.+|... |++++|++.+.+..+.-...+
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~------~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEMAPRHKE------VLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQK 230 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 224555555 899999999999888877665 788888888887 899888887766653210000
Q ss_pred ------------------------Cch---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHH
Q psy9376 149 ------------------------SNS---SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRA 201 (320)
Q Consensus 149 ------------------------~~~---~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a 201 (320)
.+. ........+|..+...|++++|.+.++++....+++....+ . .
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-----~--~ 303 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-----P--L 303 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-----H--H
Confidence 000 12355666778889999999999999999988776542100 0 0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH---HHHHHHHHhcCHhHHHHHHHHHh--hhcchhhhHHH
Q psy9376 202 ALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL---RILIEHIEEQNVDGFTEAVKDYD--SISRLDQWYTT 270 (320)
Q Consensus 202 ~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l---~~l~~a~~~~d~~~~~~Ai~~ye--~~~~ld~~~~~ 270 (320)
.......+.++..+++...+......|++.++.++ +.++ + ..+++++|.+.|+ ...+.+|....
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~--~---~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL--M---KHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--H---HcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 00011113345555666666666666776633332 3333 2 4789999999999 56666665544
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=8.5e-07 Score=88.58 Aligned_cols=136 Identities=9% Similarity=-0.030 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
+|..-.+.+...|.+....|.+++|...++.++++. |. ...+..+.+.++.+. ++++|+..+++++...|++.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----PD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----CC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 333334555566888889999999999999999995 33 455677777888887 99999999999999988876
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
. .+..+|.++... |++++|+++|++++.-.+. ..+++...|.++...|+.++|...|++++..
T Consensus 155 ~------~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 155 R------EILLEAKSWDEI-GQSEQADACFERLSRQHPE------FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred H------HHHHHHHHHHHh-cchHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 899999999996 9999999999999984443 3578999999999999999999999999875
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.63 E-value=2.6e-06 Score=70.74 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 69 TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 69 ~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
.....+.++...|..+... ++++|+.+|++++.+.+... ..+.++.++|.++... |++++|+.+|++++.+.+..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASN-GEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc
Confidence 3456777888889888876 99999999999998876432 2356899999999997 99999999999999987663
Q ss_pred CCchHHHHHHHHHHHHHHHccC
Q psy9376 148 ESNSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 148 ~~~~~a~~~~~~la~~~~~~g~ 169 (320)
...+..+|.++...|+
T Consensus 106 ------~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 106 ------PSALNNIAVIYHKRGE 121 (172)
T ss_pred ------HHHHHHHHHHHHHcCC
Confidence 4456677777776665
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=9e-07 Score=75.28 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-hcC-C--H
Q psy9376 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCF-KKT-D--N 89 (320)
Q Consensus 28 ~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y-~~~-~--~ 89 (320)
++.++++..+.++ |.+|...|++++|+.+|.+++.+.+ .....+...|.++ ... + +
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P------~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG------ENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCCCc
Confidence 4555666555554 7889999999999999999999853 2456677778764 444 4 6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 90 EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 90 ~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
++|...+++++.+.+++.. ++..+|..+... |++++|+.+|++++++.+...++.
T Consensus 127 ~~A~~~l~~al~~dP~~~~------al~~LA~~~~~~-g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 127 PQTREMIDKALALDANEVT------ALMLLASDAFMQ-ADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHHhCCCChh------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999998876 899999999997 999999999999999988866543
No 79
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.61 E-value=3.8e-06 Score=71.77 Aligned_cols=145 Identities=16% Similarity=0.123 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
..+..+...|..+... |++.+|+..|++....+|... .+.++...+|.++...|+|++|+..|++.....|+++..
T Consensus 3 ~~~~~lY~~a~~~~~~-g~y~~Ai~~f~~l~~~~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 3 DTAEALYQKALEALQQ-GDYEEAIKLFEKLIDRYPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp --HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 3456788888888887 999999999999999998854 367788999999999999999999999999988887653
Q ss_pred hcchhHhHHHHHHHHH---------hhhhHHHHHHHHHHHHhCCCccCcHHHH------------HH-HHHHHHHHhcCH
Q psy9376 191 KYSAKEYFFRAALCHL---------CIDVINAHNAIDRYKTIYPAFQDSREYK------------LL-RILIEHIEEQNV 248 (320)
Q Consensus 191 ~~~~~~~~~~a~~~~l---------~~d~~~~~~A~~~y~~~~~~f~~s~e~~------------~l-~~l~~a~~~~d~ 248 (320)
. ..++..+.++. ..|+....+|+..++.+...||+|.... +. ..+..+--.-..
T Consensus 79 ~----~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 79 D----YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp H----HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred h----hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 22344455433 2367888999999999999999864221 11 111101111246
Q ss_pred hHHHHHHHHHhhhcc
Q psy9376 249 DGFTEAVKDYDSISR 263 (320)
Q Consensus 249 ~~~~~Ai~~ye~~~~ 263 (320)
+.|..|+..|+.+++
T Consensus 155 ~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIE 169 (203)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 788888888888887
No 80
>PLN02789 farnesyltranstransferase
Probab=98.61 E-value=2.1e-05 Score=71.73 Aligned_cols=228 Identities=7% Similarity=-0.093 Sum_probs=150.5
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-C--
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAK-KWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-D-- 88 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g-~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~-- 88 (320)
.+++++|+..+.++ |.++..+| ++++++.++.+++...+ ....+|...+.++... +
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np------knyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP------KNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC------cchHHhHHHHHHHHHcCchh
Confidence 57889999999887 45666777 68999999999998853 2334566666666665 3
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc-
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL- 167 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~- 167 (320)
.+++++++.+++++.+++-. +|...|.++... |+++++++++.++++.-+.+ ..++...+.++...
T Consensus 124 ~~~el~~~~kal~~dpkNy~------AW~~R~w~l~~l-~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYH------AWSHRQWVLRTL-GGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITRSP 190 (320)
T ss_pred hHHHHHHHHHHHHhCcccHH------HHHHHHHHHHHh-hhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHhcc
Confidence 37889999999999988876 899999999996 99999999999999987765 34677777776655
Q ss_pred --cCH----HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHh-hhhHHHHHHHHHHHHhCCCccCcHH-HHHHHHH
Q psy9376 168 --QNY----NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLC-IDVINAHNAIDRYKTIYPAFQDSRE-YKLLRIL 239 (320)
Q Consensus 168 --g~y----~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-~d~~~~~~A~~~y~~~~~~f~~s~e-~~~l~~l 239 (320)
|.+ ++++++..+++...|++... |... .++..-. ...+...++.+.+.+....-+.+.. -.++.++
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~Sa-W~Yl-----~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 264 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESP-WRYL-----RGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDL 264 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCH-HHHH-----HHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 333 57888888998887766532 2211 1111110 0123334455555554443333322 2334444
Q ss_pred HHHHHh-------------cCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhh
Q psy9376 240 IEHIEE-------------QNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQV 279 (320)
Q Consensus 240 ~~a~~~-------------~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~ 279 (320)
+..-.. .+.....+|++.++...+.||-..+-+.-.++.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~~~~ 317 (320)
T PLN02789 265 LCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRKSKL 317 (320)
T ss_pred HHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHHHhh
Confidence 321000 0111457899999988888888777666554443
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=1.5e-06 Score=86.80 Aligned_cols=171 Identities=10% Similarity=0.004 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHH
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMA 112 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~a 112 (320)
-+...++-.+...-+.-..+.+..-+++...+. +...+.++.++|.+.... .+++|...++.++++.|++-.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---- 121 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR---YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---- 121 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh---ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----
Confidence 445555555666666666777777777766653 444578899999998888 999999999999999998866
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKY 192 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~ 192 (320)
+..+.+.++.+. +++++|...+++++..-++. ...+..+|.++..+|+|++|+.+|+++....++.+..
T Consensus 122 --a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~-- 190 (694)
T PRK15179 122 --AFILMLRGVKRQ-QGIEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENG-- 190 (694)
T ss_pred --HHHHHHHHHHHh-ccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHH--
Confidence 899999999997 99999999999999998875 6788999999999999999999999999755443321
Q ss_pred chhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccC
Q psy9376 193 SAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQD 229 (320)
Q Consensus 193 ~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~ 229 (320)
+. ..-++....|+.++|...|+.+.+.+.+
T Consensus 191 -----~~--~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 191 -----YV--GWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred -----HH--HHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 11 2222334568888888888887666654
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=2.7e-05 Score=69.12 Aligned_cols=145 Identities=16% Similarity=0.117 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
+-|.....+..++|...++|.+|+++-++..++-.+. ...+.|..|=+++..+... +.+.|+..+.+|+...++.-+
T Consensus 138 efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR- 215 (389)
T COG2956 138 EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR- 215 (389)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee-
Confidence 3444445556789999999999999888877765332 3446788888888888777 899999999999999887766
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
+-.-+|.++... |+|++|++.++..++-.+. -.+.++..+-.+|..+|+..+.+..+.+.....++..
T Consensus 216 -----Asi~lG~v~~~~-g~y~~AV~~~e~v~eQn~~-----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 216 -----ASIILGRVELAK-GDYQKAVEALERVLEQNPE-----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred -----hhhhhhHHHHhc-cchHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 788899999997 9999999999988876443 4678999999999999999999999999987655543
No 83
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.59 E-value=3.3e-06 Score=79.96 Aligned_cols=222 Identities=13% Similarity=0.024 Sum_probs=142.8
Q ss_pred hhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q psy9376 20 VFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSK 98 (320)
Q Consensus 20 ~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~k 98 (320)
.+.+|++..+..++-....+ |.+-...||++.|.....++.+.. + ....++..+|.++... +++.|..++.+
T Consensus 71 ~~~~~~~~r~~~k~~~~~~~-glla~~~g~~~~A~~~l~~~~~~~-----~-~~~~~~llaA~aa~~~g~~~~A~~~l~~ 143 (409)
T TIGR00540 71 HSRGWFSGRKRRKAQKQTEE-ALLKLAEGDYAKAEKLIAKNADHA-----A-EPVLNLIKAAEAAQQRGDEARANQHLEE 143 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHhhcC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33445544466677777666 455566899999999998877752 1 2345566777877776 99999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy9376 99 AIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYE 178 (320)
Q Consensus 99 A~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~ 178 (320)
+.+..++.+-. +....+.++... |++++|...+++..+..|.+ ..++..++.++...|++++|++.+.
T Consensus 144 a~~~~p~~~l~-----~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 144 AAELAGNDNIL-----VEIARTRILLAQ-NELHAARHGVDKLLEMAPRH------KEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred HHHhCCcCchH-----HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 98777655421 233347788887 99999999999999998875 4688899999999999999999999
Q ss_pred HHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc----CcHHHHHH-HHHHHHHHhcCHhHHHH
Q psy9376 179 EVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ----DSREYKLL-RILIEHIEEQNVDGFTE 253 (320)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~----~s~e~~~l-~~l~~a~~~~d~~~~~~ 253 (320)
+..+....++....... ..+....+ +.+..++..+...+.....| ++....+. ..++ .+.+++++
T Consensus 212 ~l~k~~~~~~~~~~~l~---~~a~~~~l--~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l-----~~~g~~~~ 281 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLE---QKAEIGLL--DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL-----IDCDDHDS 281 (409)
T ss_pred HHHHcCCCCHHHHHHHH---HHHHHHHH--HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH-----HHCCChHH
Confidence 98865322111000000 00111111 12222222223322222223 34444433 2322 24678888
Q ss_pred HHHHHhhhcchhhhHHH
Q psy9376 254 AVKDYDSISRLDQWYTT 270 (320)
Q Consensus 254 Ai~~ye~~~~ld~~~~~ 270 (320)
|++..++..+.+|....
T Consensus 282 A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 282 AQEIIFDGLKKLGDDRA 298 (409)
T ss_pred HHHHHHHHHhhCCCccc
Confidence 98888888887777663
No 84
>KOG2076|consensus
Probab=98.59 E-value=1.2e-05 Score=79.52 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
++....++.-.--.++.....|++++|.+.+.+++... +....+|..+|.+|.+. +.+++..+...|..+.|+
T Consensus 132 ~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~ 205 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK 205 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 45556644444444565566699999999999999874 24667899999999998 999999999999988887
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 106 ~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
... .|..++....++ |++++|+-||.+|+.+-|.. .+...+-+.+|.+.|++..|++.|.++....|
T Consensus 206 d~e------~W~~ladls~~~-~~i~qA~~cy~rAI~~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 206 DYE------LWKRLADLSEQL-GNINQARYCYSRAIQANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred ChH------HHHHHHHHHHhc-ccHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 654 799999999996 99999999999999998875 45777889999999999999999999998766
No 85
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.59 E-value=4.2e-07 Score=84.35 Aligned_cols=92 Identities=16% Similarity=0.088 Sum_probs=49.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIA 120 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la 120 (320)
......|+|+.|+++|.+++.+.. ..+.+|.+.|.+|... ++++|+..+++|+.+.+.+.. ++..+|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~------a~~~lg 77 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK------AYLRKG 77 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH------HHHHHH
Confidence 333445566666666666655521 1234455555555555 555566555555555543322 455555
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
.+|... |++++|+..|++++.+.+.
T Consensus 78 ~~~~~l-g~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 78 TACMKL-EEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhCCC
Confidence 555554 5566666666555555544
No 86
>KOG0553|consensus
Probab=98.58 E-value=3.4e-07 Score=80.33 Aligned_cols=104 Identities=22% Similarity=0.174 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
.|+.+..=|+-..+. +|++|+..|.+|+.+.|.+-- +|.+-|.+|.+. |+++.||+-.+.|+.+-+.
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV------yycNRAAAy~~L-g~~~~AVkDce~Al~iDp~----- 147 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV------YYCNRAAAYSKL-GEYEDAVKDCESALSIDPH----- 147 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch------HHHHHHHHHHHh-cchHHHHHHHHHHHhcChH-----
Confidence 344455556555555 899999999999999988755 799999999995 9999999999999999776
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
-.+.|..+|..|..+|++.+|++.|++++.+.|.++.
T Consensus 148 -yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 148 -YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred -HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 3679999999999999999999999999999888764
No 87
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.58 E-value=1.1e-06 Score=67.45 Aligned_cols=108 Identities=21% Similarity=0.181 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA 153 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a 153 (320)
..+...|..+... ++++|+..+.+++...++.. ..+.++..+|.++... |++++|+.+|++++..++.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~---~ 75 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPK---A 75 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCc---c
Confidence 3456666776666 88999999999887765432 2345688899999997 9999999999999988765422 2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
..++..+|.++...|++++|+.+|+++....|+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 456888999999999999999999999887776553
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=3.9e-06 Score=77.56 Aligned_cols=200 Identities=13% Similarity=0.008 Sum_probs=96.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIA 120 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la 120 (320)
|..+...|+++.|...+.++.......-++.+ ..+..+...+...++++|...++++++..|.... ++.. +
T Consensus 13 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~------a~~~-~ 83 (355)
T cd05804 13 ALLLLLGGERPAAAAKAAAAAQALAARATERE--RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL------ALKL-H 83 (355)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhccCCCHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH------HHHH-h
Confidence 45555666777777777766666543222111 1222222223333777777777777766554321 1111 2
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHH
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFR 200 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~ 200 (320)
..+... |++..+.....+++.. ..+........+..+|.++...|++++|+..++++....+++... .
T Consensus 84 ~~~~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~---------~ 151 (355)
T cd05804 84 LGAFGL-GDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA---------V 151 (355)
T ss_pred HHHHHh-cccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH---------H
Confidence 222222 3333333333333332 111222234455566777777777777777777776655544211 0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH-----HHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 201 AALCHLCIDVINAHNAIDRYKTIYPAFQDSREY-----KLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 201 a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~-----~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
..+.+++...++.++|...+.+..+..+..... ..+..+. ...|++++|+..|+++....|
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~-----~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY-----LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH-----HHCCCHHHHHHHHHHHhcccc
Confidence 122233334555666666665554444322111 1122221 135777777777777654433
No 89
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.57 E-value=3.6e-07 Score=63.61 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhh
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQ-NYNKAIQIYEEVGRTS 184 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g-~y~~Ai~~y~~~~~~~ 184 (320)
|..|..+|.++... |++++|+.+|++++++.+.. ..++.++|.++..+| ++++|++.++++....
T Consensus 3 a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 56899999999997 99999999999999997763 679999999999999 7999999999998654
No 90
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.55 E-value=2.6e-06 Score=70.35 Aligned_cols=109 Identities=13% Similarity=0.002 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 69 TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 69 ~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
.....+..+...|.++... ++++|+.+|++|+.+.++ +...+.++.++|.+|... |++++|+.+|++|+.+.+..
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSN-GEHTKALEYYFQALERNPFL 105 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc
Confidence 3445778889999999887 999999999999988543 233456899999999997 99999999999999986664
Q ss_pred CC-chHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 148 ES-NSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 148 ~~-~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
.. +...+.++..+|.++...|++++|+..|+++.
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 31 12233444444444458888887777776664
No 91
>KOG0548|consensus
Probab=98.53 E-value=7.2e-05 Score=70.46 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRAA-------------NMFKMAKKWNNAGKAFVEAANLHMKSG-TKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag-------------~~~~~~g~~~~A~~~y~kA~~~~~~~~-~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
+.+++.|+..|..+- ..|...|.+...+..-.++.+..+... +....+.++..+|+.|.+. +++.
T Consensus 237 kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 457777777777663 444455555555555555555443322 2223566666778888887 8999
Q ss_pred HHHHHHHHHHHHHH------cCCh--------------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 92 AIDCLSKAIVIYTD------MGRF--------------TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 92 A~~~~~kA~~l~~~------~~~~--------------~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
++.+|.+++.-++. .... ...+.-...-|+.+... |+|..|+..|.+|+..-|++
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~-gdy~~Av~~YteAIkr~P~D---- 391 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK-GDYPEAVKHYTEAIKRDPED---- 391 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCch----
Confidence 99999999887653 0000 11133344557777776 99999999999999988775
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcH
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSR 231 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~ 231 (320)
+..|.+.|-+|.++|.+..|+.--+..+...++. .++|+.. +.+.. -..++.+|++.|+.....-|.+.
T Consensus 392 --a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~------~kgy~RK-g~al~--~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 392 --ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF------IKAYLRK-GAALR--AMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred --hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH------HHHHHHH-HHHHH--HHHHHHHHHHHHHHHHhcCchhH
Confidence 5789999999999999999999988888765542 2344433 33322 34667777777776655556655
Q ss_pred HH
Q psy9376 232 EY 233 (320)
Q Consensus 232 e~ 233 (320)
+.
T Consensus 461 e~ 462 (539)
T KOG0548|consen 461 EA 462 (539)
T ss_pred HH
Confidence 54
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.53 E-value=1.2e-06 Score=63.64 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
++++|+..++++++..+.+ + -..++..+|.+|-.. |++++|++++++ ....+.. ..+...+|.++.++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~~~~~------~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKLDPSN------PDIHYLLARCLLKL 71 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHT-THHHHHHHHHHC-HTHHHCH------HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCCCCCC------HHHHHHHHHHHHHh
Confidence 6889999999999998852 1 233788899999997 999999999998 5544432 45666779999999
Q ss_pred cCHHHHHHHHHHH
Q psy9376 168 QNYNKAIQIYEEV 180 (320)
Q Consensus 168 g~y~~Ai~~y~~~ 180 (320)
|+|++|+++|+++
T Consensus 72 ~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 GKYEEAIKALEKA 84 (84)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 9999999999874
No 93
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.52 E-value=3e-06 Score=70.30 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~ 106 (320)
++...+. .+..-|..+...|++++|+.+|++++++.+. +...+..+.++|.++... ++++|+.++++++.+.+..
T Consensus 30 ~~~~~a~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 30 KKAKEAF-VYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred cHhhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3444444 4455678889999999999999999988643 223467889999999988 9999999999999987765
Q ss_pred CChHHHHHHHHHHHHHHHhccCC-------HHHHHHHHHHHHhHh
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVD-------QEKAVEHYEQAATYF 144 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~-------~~~Ai~~y~kA~~~~ 144 (320)
.. .+..+|.+|... |+ +++|+..|++|++++
T Consensus 106 ~~------~~~~lg~~~~~~-g~~~~a~~~~~~A~~~~~~A~~~~ 143 (172)
T PRK02603 106 PS------ALNNIAVIYHKR-GEKAEEAGDQDEAEALFDKAAEYW 143 (172)
T ss_pred HH------HHHHHHHHHHHc-CChHhHhhCHHHHHHHHHHHHHHH
Confidence 33 566667776664 55 444444444444433
No 94
>KOG0624|consensus
Probab=98.52 E-value=1.2e-05 Score=71.97 Aligned_cols=206 Identities=17% Similarity=0.166 Sum_probs=143.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy9376 45 KMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIY 123 (320)
Q Consensus 45 ~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y 123 (320)
...||+..|++...+.+++. .+.+..+.--+.||... ++..||.-++.+..+..++-. .+++++.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe------~~ykis~L~ 233 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE------GHYKISQLL 233 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH------HHHHHHHHH
Confidence 34589999999999999983 46788888889999998 899999999999988877655 789999988
Q ss_pred HhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH------HHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHh
Q psy9376 124 ETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVA------HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEY 197 (320)
Q Consensus 124 ~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la------~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~ 197 (320)
-.. |+.+.++..-.+.+.+.|+...-.---.-+.++. .-.++.++|.++++.+++..+..|..+..++....
T Consensus 234 Y~v-gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r- 311 (504)
T KOG0624|consen 234 YTV-GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR- 311 (504)
T ss_pred Hhh-hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh-
Confidence 885 9999999998888888777543221112222222 22356788999999999999887764433332211
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHH
Q psy9376 198 FFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVL 272 (320)
Q Consensus 198 ~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l 272 (320)
.+|+-+..-+..-+|+....+..+.-|+.-+-.+ +-.+|+- -.+.|+.||..|+++..+||.++.+=
T Consensus 312 ----~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~--dRAeA~l--~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 312 ----VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC--DRAEAYL--GDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred ----eeeecccccCCHHHHHHHHHHHHhcCchHHHHHH--HHHHHHh--hhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 2343334445566677666665555444333221 1122221 24799999999999999999988763
No 95
>KOG1941|consensus
Probab=98.52 E-value=1e-05 Score=72.79 Aligned_cols=155 Identities=23% Similarity=0.252 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHD----AACNLLDAANC 83 (320)
Q Consensus 28 ~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~----aa~~~~~aa~~ 83 (320)
+-++++++.|+.| |..|-..+|+++|+.+-.+|+++..+.+-..+ -+..+..++..
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence 4577888888877 66778888999999999999999887663222 23344555667
Q ss_pred HhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHH
Q psy9376 84 FKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAH 162 (320)
Q Consensus 84 y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~ 162 (320)
++.. ..-.|.++.++|..+....|+...-+++..-+|.+|++. |+.+.|..-|++|.......|++.....++..++.
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~-gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Ak 294 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR-GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAK 294 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc-ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 7766 777899999999999999999999999999999999997 99999999999999999999888888888888888
Q ss_pred HHHHccCHHH-----HHHHHHHHHHh
Q psy9376 163 HAALLQNYNK-----AIQIYEEVGRT 183 (320)
Q Consensus 163 ~~~~~g~y~~-----Ai~~y~~~~~~ 183 (320)
++....-..+ |++.-++....
T Consensus 295 c~~~~r~~~k~~~Crale~n~r~lev 320 (518)
T KOG1941|consen 295 CLETLRLQNKICNCRALEFNTRLLEV 320 (518)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHH
Confidence 8876654444 77776666543
No 96
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.51 E-value=6e-07 Score=64.58 Aligned_cols=94 Identities=24% Similarity=0.303 Sum_probs=74.6
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
+.+.|.++... ++++|+..+++++...+... .++..+|.++... +++++|+.++++++.+.+... .
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcch------h
Confidence 45566666665 78888888888887765543 4788899998887 899999999999988876643 5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
++..+|.++...|++++|...++++...
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 7788899999999999999998887654
No 97
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.50 E-value=2.5e-06 Score=75.60 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=88.8
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHH
Q psy9376 76 NLLDAANCFK-KTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSAN 154 (320)
Q Consensus 76 ~~~~aa~~y~-~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~ 154 (320)
.|..+-..+. ..++++|+..|++.+..+|+.. .++.+++.+|.+|... |++++|+..|++.+..|+.... ..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~---~~ 217 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPK---AA 217 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcc---hh
Confidence 3444433323 3499999999999999998764 3445799999999997 9999999999999999997543 57
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
+++.++|.++..+|++++|+.+|+++....|+...
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 78999999999999999999999999988777553
No 98
>KOG1125|consensus
Probab=98.50 E-value=6.5e-07 Score=84.52 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=97.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|.+|...|+|++|++||+.|+... +.....|+.+|-++-.. +..+||+.|.+|+++.|.-=+ +.+++
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR------~RyNl 504 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVK------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR------VRYNL 504 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcC------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee------eehhh
Confidence 788899999999999999999883 34677899999999888 899999999999999987765 79999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH----HHHHHHHHHHHHHccCHHHHHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA----NKCLLKVAHHAALLQNYNKAIQ 175 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a----~~~~~~la~~~~~~g~y~~Ai~ 175 (320)
|..+.+. |.|.+|+.+|..|+.+.+........ ..++..|=.++...++.|-+.+
T Consensus 505 gIS~mNl-G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 505 GISCMNL-GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhh-hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999996 99999999999999998874322221 3445444455555565554443
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=1.8e-06 Score=68.34 Aligned_cols=101 Identities=21% Similarity=0.120 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHH
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAA 113 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa 113 (320)
......|..+...|++++|...|++++.+. + .....+..+|.++... ++++|+.++++++.+.+.+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~----- 86 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-----P-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR----- 86 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH-----
Confidence 334556788888999999999999998874 2 2457788889999877 999999999999998776554
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
.+..+|.+|... |++++|+..|++++++.+...
T Consensus 87 -~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 87 -PYFHAAECLLAL-GEPESALKALDLAIEICGENP 119 (135)
T ss_pred -HHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccc
Confidence 789999999997 999999999999999988754
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.49 E-value=2.6e-06 Score=78.71 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
........|.++... ++++|...+++++++.|++.. .+..+|.++... |++++|+.++++++...+.. ..
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~------~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~--~~ 183 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW------AVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCS--SM 183 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH------HHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCC--cc
Confidence 344455566677766 899999999999999877644 789999999997 99999999999999987652 22
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
.....+..+|.++...|++++|+..|+++...
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 33456778999999999999999999998643
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.46 E-value=1.8e-06 Score=80.16 Aligned_cols=101 Identities=18% Similarity=0.097 Sum_probs=86.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHH
Q psy9376 77 LLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKC 156 (320)
Q Consensus 77 ~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~ 156 (320)
..++...+...++++|+++|.+|+.+.+.+. .++.++|.+|... |++++|+..+++|+.+.+.. ..+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~------~a~~~~a~~~~~~-g~~~eAl~~~~~Al~l~P~~------~~a 72 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNA------ELYADRAQANIKL-GNFTEAVADANKAIELDPSL------AKA 72 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCC------HHH
Confidence 3444455566699999999999999887654 3799999999997 99999999999999998764 568
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 157 LLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 157 ~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
+..+|.++..+|+|++|+..|+++....++++..
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8999999999999999999999999988777654
No 102
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.45 E-value=4.3e-05 Score=67.11 Aligned_cols=175 Identities=12% Similarity=0.033 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHH
Q psy9376 75 CNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSAN 154 (320)
Q Consensus 75 ~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~ 154 (320)
..|..+-..+...++++|++.|++.+..+|.. ..+..+...+|.+|-.. +++++|+..|++.+..+|...+ +.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~~~---~~ 106 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPN---ID 106 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCCCc---hH
Confidence 34455444455557888888888887777643 34445577888888886 8888888888888888887654 45
Q ss_pred HHHHHHHHHHHHcc---------------C---HHHHHHHHHHHHHhhhhhhhhhcchhHhH----HHHHHH-----HHh
Q psy9376 155 KCLLKVAHHAALLQ---------------N---YNKAIQIYEEVGRTSLDSSLLKYSAKEYF----FRAALC-----HLC 207 (320)
Q Consensus 155 ~~~~~la~~~~~~g---------------~---y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~----~~a~~~-----~l~ 207 (320)
.++..+|.++..++ | ..+|+..|++..+..|+++...- ++..+ .+.+.. +.+
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~-A~~rl~~l~~~la~~e~~ia~~Y 185 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD-ATKRLVFLKDRLAKYELSVAEYY 185 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776653332 1 24677888888888777664321 21111 011111 122
Q ss_pred hhhHHHHHHHHHHHHhCCCccCcHHHH-HHHHHHHHHH-hcCHhHHHHHHHH
Q psy9376 208 IDVINAHNAIDRYKTIYPAFQDSREYK-LLRILIEHIE-EQNVDGFTEAVKD 257 (320)
Q Consensus 208 ~d~~~~~~A~~~y~~~~~~f~~s~e~~-~l~~l~~a~~-~~d~~~~~~Ai~~ 257 (320)
.+.+....|+..++.....||++.... .+.-+..++. .+..+...+.+..
T Consensus 186 ~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 186 TKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 355778889999999988998875442 3344444443 2334444444433
No 103
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.44 E-value=3.1e-05 Score=68.02 Aligned_cols=145 Identities=18% Similarity=0.077 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--
Q psy9376 27 GNKIDEAIECYTRA-----------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-- 87 (320)
+|++++|++.|++. |.++...+++++|+..|++.++.++... ....++...|.++...
T Consensus 45 ~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~---~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 45 DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---NIDYVLYMRGLTNMALDD 121 (243)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC---chHHHHHHHHHhhhhcch
Confidence 35666666665544 3444556666666666666666655332 2344555555542111
Q ss_pred --------------C---HHHHHHHHHHHHHHHHHcCChHHH-----------HHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy9376 88 --------------D---NEAAIDCLSKAIVIYTDMGRFTMA-----------AKHHQTIAEIYETDCVDQEKAVEHYEQ 139 (320)
Q Consensus 88 --------------~---~~eA~~~~~kA~~l~~~~~~~~~a-----------a~~~~~la~~y~~~l~~~~~Ai~~y~k 139 (320)
| ..+|+..+++.+..+|+......+ |..-..+|..|.+. |.|..|+.-++.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~-~~y~AA~~r~~~ 200 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR-GAYVAVVNRVEQ 200 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHH
Confidence 1 134556666666666644332222 22234555556665 666666666666
Q ss_pred HHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy9376 140 AATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYE 178 (320)
Q Consensus 140 A~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~ 178 (320)
.++-||.... ..+++..++..|..+|..++|.++..
T Consensus 201 v~~~Yp~t~~---~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 201 MLRDYPDTQA---TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHCCCCch---HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 6666666433 44566666666666666666655444
No 104
>KOG1129|consensus
Probab=98.43 E-value=1.1e-06 Score=77.92 Aligned_cols=207 Identities=10% Similarity=0.035 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
-....|...+++..|+..|.+-++.+ | +........+.++..+ +.++|+++|+.+++..+.+=. +.-
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~f-----P-~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE------aiA 328 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSF-----P-FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE------AIA 328 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcC-----C-chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce------eee
Confidence 34567777788888888777776654 2 2333444445666665 667777777777666654432 233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHh
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEY 197 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~ 197 (320)
-+|.-|.-. ++++-|+.+|.+.+.+-... .+.+.++|-+..-.+++|-++..|+++.....+... +.+.
T Consensus 329 cia~~yfY~-~~PE~AlryYRRiLqmG~~s------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~----aaDv 397 (478)
T KOG1129|consen 329 CIAVGYFYD-NNPEMALRYYRRILQMGAQS------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ----AADV 397 (478)
T ss_pred eeeeccccC-CChHHHHHHHHHHHHhcCCC------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch----hhhh
Confidence 334334443 56666777776666654332 356666666666666677777666666655322211 1223
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 198 FFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 198 ~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
|++.+- +..+.|+..-|-..++-....-++..|...--.++ ....|+..+|-..++.+..+.|.+-.+..+
T Consensus 398 WYNlg~--vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL----~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 398 WYNLGF--VAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL----AARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred hhccce--eEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH----HhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 333221 12233443333333332222223333322112222 224678888888888888888887766443
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.0006 Score=71.04 Aligned_cols=155 Identities=12% Similarity=-0.078 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHH-----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRA-----------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANC 83 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~ 83 (320)
.+++++|..++..+ +.++...|+++.|...+++++.... .++....+.+...+|.+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEV 500 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHH
Confidence 46777777776544 2445568999999999999987532 22333345566777777
Q ss_pred HhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc--hHHHHHHHHH
Q psy9376 84 FKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN--SSANKCLLKV 160 (320)
Q Consensus 84 y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~--~~a~~~~~~l 160 (320)
+... ++++|...+++++...+..|.....+.++..+|.++... |++++|..++++++.+....+.. ......+..+
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 7666 999999999999999999999888888999999999997 99999999999999988765432 1123345678
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh
Q psy9376 161 AHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 161 a~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
|.++...|++++|...++++...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHh
Confidence 99999999999999999998765
No 106
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.42 E-value=1.4e-06 Score=59.85 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=55.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
.+|..+... |++++|+.+|++++...|. ...++..+|.++...|++++|+..|+++....|++
T Consensus 2 ~~a~~~~~~-g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQ-GDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHC-THHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHc-CCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 568888887 9999999999999999877 47899999999999999999999999999877764
No 107
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.41 E-value=4.7e-07 Score=62.99 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHhHhh
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCV-DQEKAVEHYEQAATYFK 145 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~-~~~~Ai~~y~kA~~~~~ 145 (320)
+..|.+.|.++... ++++|+.+|.+|+++.|.+.. ++.++|.+|... | ++++|+..+++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~------~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE------AYYNLGLAYMKL-GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH------HHHHHHHHHHHT-TTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHh-CccHHHHHHHHHHHHHcCc
Confidence 55677778887777 788888888888888665433 788888888886 8 68888888888887643
No 108
>KOG1941|consensus
Probab=98.40 E-value=5.9e-06 Score=74.27 Aligned_cols=143 Identities=17% Similarity=0.113 Sum_probs=126.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC--Ch--HHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG--RF--TMAAK 114 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~--~~--~~aa~ 114 (320)
.|+.+..++.++++++.|++|..+....+++.-....+..+|..|-.. |+++|+-+..+|.++-...+ +. ---+.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 367777788999999999999999999999988888999999999998 99999999999999988765 22 22344
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
.+..++..++.. |+...|.++-++|.++.-..|+....+.++.-+|++|...|+.+.|-.-|+.+...
T Consensus 208 ~lyhmaValR~~-G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 208 SLYHMAVALRLL-GRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 678899999997 99999999999999999999999999999999999999999999999888887643
No 109
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=3.9e-06 Score=64.41 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 36 ~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
.+...|..+...|++++|+..|.++....+ +......++..+|.++... ++++|+.++++++..+|.... ...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---APD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---ccH
Confidence 445567888889999999999999987643 2223456778889999888 999999999999988765432 234
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
++..+|.++... |++++|+.+|.++++.+|..
T Consensus 78 ~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 78 ALLKLGMSLQEL-GDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHh-CChHHHHHHHHHHHHHCcCC
Confidence 699999999997 99999999999999998875
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.39 E-value=4.3e-06 Score=74.09 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
.-..|+.|-..+...|+|++|+..|++.+..++.. ..+..++..+|.+|... ++++|+..|++++..+|+...
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~--- 215 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK--- 215 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---
Confidence 45668777766666799999999999999998642 23456788889998887 999999999999999987654
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
...++.++|.++... |++++|+..|++.+..||+..
T Consensus 216 ~~dAl~klg~~~~~~-g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 216 AADAMFKVGVIMQDK-GDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred hhHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCH
Confidence 445799999999997 999999999999999999753
No 111
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.37 E-value=1.5e-05 Score=61.84 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
.+++++|.++... |+.++|+.+|++|+..-.. ......++..+|..+..+|++++|+.++++.....|+
T Consensus 2 ~~~~~~A~a~d~~-G~~~~Ai~~Y~~Al~~gL~---~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSL-GREEEAIPLYRRALAAGLS---GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4688999999997 9999999999999985222 2334578999999999999999999999999876665
No 112
>KOG3060|consensus
Probab=98.35 E-value=2.7e-05 Score=66.93 Aligned_cols=141 Identities=18% Similarity=0.114 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAA 92 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA 92 (320)
.++.+.|-.++++. |..+...|++++|+++|+..++= +|.+.+..-..++..-..++.-+|
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-----dpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-----DPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-----CcchhHHHHHHHHHHHHcCCcHHH
Confidence 56677777777664 66777788999999988887754 455555555555555444567789
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHcc---C
Q psy9376 93 IDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQ---N 169 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g---~ 169 (320)
|+....-++.|+..-. +|..++++|-.. |++++|+-||++.+-+-|-. .-++..+|+++.-+| +
T Consensus 140 Ik~ln~YL~~F~~D~E------AW~eLaeiY~~~-~~f~kA~fClEE~ll~~P~n------~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQE------AWHELAEIYLSE-GDFEKAAFCLEELLLIQPFN------PLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHHHHHhcCcHH------HHHHHHHHHHhH-hHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHH
Confidence 9988888888875544 899999999997 99999999999999887775 347788888887665 5
Q ss_pred HHHHHHHHHHHHHhhh
Q psy9376 170 YNKAIQIYEEVGRTSL 185 (320)
Q Consensus 170 y~~Ai~~y~~~~~~~~ 185 (320)
+.-|.++|.++.+..+
T Consensus 207 ~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 207 LELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHhCh
Confidence 7789999999998766
No 113
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.35 E-value=0.00014 Score=62.01 Aligned_cols=150 Identities=21% Similarity=0.164 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
+-.+|.. |..+...|+|.+|+..|++...-++. ...+..+...+|.++... ++++|+..+++-+..+|.....
T Consensus 5 ~~~lY~~-a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-- 78 (203)
T PF13525_consen 5 AEALYQK-ALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-- 78 (203)
T ss_dssp HHHHHHH-HHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH--
T ss_pred HHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--
Confidence 4455555 56666689999999999999888764 334667778888888887 9999999999999999987754
Q ss_pred HHHHHHHHHHHHHhc----------cCCHHHHHHHHHHHHhHhhccCCchHHHHH-----------HHHHHHHHHHccCH
Q psy9376 112 AAKHHQTIAEIYETD----------CVDQEKAVEHYEQAATYFKGEESNSSANKC-----------LLKVAHHAALLQNY 170 (320)
Q Consensus 112 aa~~~~~la~~y~~~----------l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~-----------~~~la~~~~~~g~y 170 (320)
..++..+|.++... .+...+|+..|+..+..||+..-...+..- -..+|..|.+.|.|
T Consensus 79 -~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 79 -DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred -hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 34566666654322 144568999999999999987544333222 23457778899999
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy9376 171 NKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~ 189 (320)
.-|+..|+.++...|+.+.
T Consensus 158 ~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHCCCCch
Confidence 9999999999998877654
No 114
>PLN03077 Protein ECB2; Provisional
Probab=98.32 E-value=0.00018 Score=74.63 Aligned_cols=158 Identities=11% Similarity=0.083 Sum_probs=88.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHH
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFR 200 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~ 200 (320)
..|.+. |+.++|...|++. -+ -..+|..+...|...|+.++|+++|+++...+....... +.
T Consensus 532 ~~y~k~-G~~~~A~~~f~~~---~~-------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-------~~ 593 (857)
T PLN03077 532 DLYVRC-GRMNYAWNQFNSH---EK-------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-------FI 593 (857)
T ss_pred HHHHHc-CCHHHHHHHHHhc---CC-------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-------HH
Confidence 344444 5555555555443 01 134677888889999999999999999876543322211 11
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhC---CCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhc-chhhhHHHHHHH--
Q psy9376 201 AALCHLCIDVINAHNAIDRYKTIY---PAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSIS-RLDQWYTTVLLR-- 274 (320)
Q Consensus 201 a~~~~l~~d~~~~~~A~~~y~~~~---~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~-~ld~~~~~~l~~-- 274 (320)
..+ ..+...+..+++...+.+.. ..-|+..-|.++.+++. ..|++++|.+.++++. +-|+-.-..|+.
T Consensus 594 ~ll-~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-----r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 594 SLL-CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-----RAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred HHH-HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-----hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 111 11233466667777776553 33344455566655542 4689999999999873 333322222222
Q ss_pred -----------HHHhhcCCCCCchhhhchhHHHhHHHHH
Q psy9376 275 -----------IKKQVGRTSLDSSLLKYSAKEYFFRAAL 302 (320)
Q Consensus 275 -----------i~~~~~~~~~~~~l~~~~~~~y~~~a~~ 302 (320)
+.+.+-+-.|+++-....+.+.|.++|.
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 2223333455555555555555555544
No 115
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.32 E-value=0.00015 Score=73.39 Aligned_cols=246 Identities=10% Similarity=0.024 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHH
Q psy9376 27 GNKIDEAIECYTR-----------AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAID 94 (320)
Q Consensus 27 ~~~~~~A~~~y~~-----------ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~ 94 (320)
.|++++|.+.|+. ....|...|++++|.+.|.+..+. |-.. ....|..+..++.+. ++++|.+
T Consensus 272 ~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSI-DQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred CCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhccchHHHHH
Confidence 5778888877764 256677778888888888776542 2111 123566666666666 7777777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy9376 95 CLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAI 174 (320)
Q Consensus 95 ~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai 174 (320)
.+...++.-... -..++..+...|.+. |+.++|...|++..+ + -..+|..+...|.+.|+.++|+
T Consensus 347 i~~~m~~~g~~~-----d~~~~~~Li~~y~k~-G~~~~A~~vf~~m~~--~-------d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 347 AHAGLIRTGFPL-----DIVANTALVDLYSKW-GRMEDARNVFDRMPR--K-------NLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HHHHHHHhCCCC-----CeeehHHHHHHHHHC-CCHHHHHHHHHhCCC--C-------CeeeHHHHHHHHHHcCCHHHHH
Confidence 777665432111 112567777888886 888888888877643 1 1346888888999999999999
Q ss_pred HHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhC---CCccCcHHHHHHHHHHHHHHhcCHhHH
Q psy9376 175 QIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIY---PAFQDSREYKLLRILIEHIEEQNVDGF 251 (320)
Q Consensus 175 ~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~---~~f~~s~e~~~l~~l~~a~~~~d~~~~ 251 (320)
++|+++...+....... +.+ +...+...+..+++.+.+.... ..-|+..-|.++.+++. ..|++
T Consensus 412 ~lf~~M~~~g~~Pd~~T-------~~~-ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-----r~G~~ 478 (697)
T PLN03081 412 EMFERMIAEGVAPNHVT-------FLA-VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-----REGLL 478 (697)
T ss_pred HHHHHHHHhCCCCCHHH-------HHH-HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-----hcCCH
Confidence 99998876543322211 111 1111223455566666665543 23344444555544442 46788
Q ss_pred HHHHHHHhhhcchhhhHH--HHH-------------HHHHHhhcCCCCCchhhhchhHHHhHHHHHHHHh
Q psy9376 252 TEAVKDYDSISRLDQWYT--TVL-------------LRIKKQVGRTSLDSSLLKYSAKEYFFRAALCHLC 306 (320)
Q Consensus 252 ~~Ai~~ye~~~~ld~~~~--~~l-------------~~i~~~~~~~~~~~~l~~~~~~~y~~~a~~c~~~ 306 (320)
++|.+.++++. ..|... ..| ..+.+.+.+..|++.-....+-+.|.++|.---+
T Consensus 479 ~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 479 DEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 88888887763 222211 111 1222333344555544445556666666654333
No 116
>KOG4234|consensus
Probab=98.31 E-value=1.6e-05 Score=66.04 Aligned_cols=127 Identities=22% Similarity=0.257 Sum_probs=101.8
Q ss_pred chHHHHhHHHHHHHhhhhhhccccCCCCHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 2 TDEKLVCEKQLAAALLRVVFITKVGGNKIDEAI---ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLL 78 (320)
Q Consensus 2 ~~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~A~---~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~ 78 (320)
+-|.|++| .+|. |+-..-+.++ +-+...|+-+...|+|.+|..-|..|+++.+.+.. ...+..|.
T Consensus 71 ~eEeLmae---~E~i--------~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~ 138 (271)
T KOG4234|consen 71 KEEELMAE---IEKI--------FSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYS 138 (271)
T ss_pred hHHHHHHH---HHHh--------cCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHh
Confidence 45778887 4455 2211223333 33455699999999999999999999999876654 45678899
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 79 DAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 79 ~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+-|.++.++ .++.||+-..+|+++.|.... ++..-|.+|++. ..|++|++-|.+.++..|..
T Consensus 139 Nraaa~iKl~k~e~aI~dcsKaiel~pty~k------Al~RRAeayek~-ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 139 NRAAALIKLRKWESAIEDCSKAIELNPTYEK------ALERRAEAYEKM-EKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhHHHHHHhhhHHHHHHHHHhhHhcCchhHH------HHHHHHHHHHhh-hhHHHHHHHHHHHHHhCcch
Confidence 999999888 899999999999999987766 788999999997 99999999999999988774
No 117
>KOG0624|consensus
Probab=98.29 E-value=0.00014 Score=65.20 Aligned_cols=227 Identities=13% Similarity=0.078 Sum_probs=154.2
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHH
Q psy9376 18 RVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCL 96 (320)
Q Consensus 18 ~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~ 96 (320)
-++|.+..+.++..++...++ +|..+...|++..|+..|-.|.+. +|. .-.++..-|.+|..+ +..-|+.-+
T Consensus 23 ~~~~e~a~~~~~~advekhlE-lGk~lla~~Q~sDALt~yHaAve~-----dp~-~Y~aifrRaT~yLAmGksk~al~Dl 95 (504)
T KOG0624|consen 23 ELFLEGAESTASPADVEKHLE-LGKELLARGQLSDALTHYHAAVEG-----DPN-NYQAIFRRATVYLAMGKSKAALQDL 95 (504)
T ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHcC-----Cch-hHHHHHHHHHHHhhhcCCccchhhH
Confidence 344443333456666666665 699999999999999999999987 343 345566667888887 666788888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH---------HHHHHHHHHHHc
Q psy9376 97 SKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK---------CLLKVAHHAALL 167 (320)
Q Consensus 97 ~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~---------~~~~la~~~~~~ 167 (320)
.+.+++-|+.-- +-..-|.++.++ |++++|+.-|.+.+..-+.++....+-. .+......+.-.
T Consensus 96 ~rVlelKpDF~~------ARiQRg~vllK~-Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 96 SRVLELKPDFMA------ARIQRGVVLLKQ-GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred HHHHhcCccHHH------HHHHhchhhhhc-ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 888877654321 456778888998 9999999999999987776553222111 111222223456
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhc
Q psy9376 168 QNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQ 246 (320)
Q Consensus 168 g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~ 246 (320)
|++..|+++...++.+++....+ +-. -+.|++. .++..+|+.........-.++.|..+- ..|+ +
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l------~~~-Rakc~i~--~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~--Y--- 234 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASL------RQA-RAKCYIA--EGEPKKAIHDLKQASKLSQDNTEGHYKISQLL--Y--- 234 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHH------HHH-HHHHHHh--cCcHHHHHHHHHHHHhccccchHHHHHHHHHH--H---
Confidence 89999999999999877644321 111 2566654 466677777776655554555555443 4444 3
Q ss_pred CHhHHHHHHHHHhhhcchhhhHHHHH
Q psy9376 247 NVDGFTEAVKDYDSISRLDQWYTTVL 272 (320)
Q Consensus 247 d~~~~~~Ai~~ye~~~~ld~~~~~~l 272 (320)
..++.+.++..-...+++||....+.
T Consensus 235 ~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred hhhhHHHHHHHHHHHHccCcchhhHH
Confidence 35778888888888888888887776
No 118
>KOG0550|consensus
Probab=98.28 E-value=7.1e-06 Score=74.88 Aligned_cols=160 Identities=19% Similarity=0.147 Sum_probs=119.3
Q ss_pred HHhhhhhhccccCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCh------HHH
Q psy9376 14 AALLRVVFITKVGGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTK------HDA 73 (320)
Q Consensus 14 ~k~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~------~~a 73 (320)
.+++|+....++ +++++|...--.. |.++...++.+.|+..|++++.+.+..... ...
T Consensus 171 a~~lka~cl~~~--~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 171 AKLLKAECLAFL--GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred HHHhhhhhhhhc--ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 355565444443 4777766543221 455666789999999999999986522111 112
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH
Q psy9376 74 ACNLLDAANC-FKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS 152 (320)
Q Consensus 74 a~~~~~aa~~-y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~ 152 (320)
...+.+-|+- |+..++..|-++|..|+.+.|.+.. .-+.+|.+.|.+..+. |+..+||.--..|+.+-+.
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~--~naklY~nra~v~~rL-grl~eaisdc~~Al~iD~s------ 319 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK--TNAKLYGNRALVNIRL-GRLREAISDCNEALKIDSS------ 319 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc--hhHHHHHHhHhhhccc-CCchhhhhhhhhhhhcCHH------
Confidence 2333333443 4444899999999999999998544 5678999999999995 9999999999999998665
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 153 ANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 153 a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
....+..-|.++..++++++|++.|+++....
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57889999999999999999999999998653
No 119
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=6.5e-05 Score=58.31 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHH
Q psy9376 76 NLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSAN 154 (320)
Q Consensus 76 ~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~ 154 (320)
+..+.+.++... ++++|+.+|++|+..- . +.....+++..+|..|... |++++|+..+++++.-+|.... . .
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~-~--~ 75 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDEL-N--A 75 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccc-c--H
Confidence 455667777777 8999999999998731 1 2334457899999999996 9999999999999998877442 2 2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
....-++.++...|++++|++.+-.+..
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2334467789999999999988877653
No 120
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=3.1e-06 Score=60.75 Aligned_cols=96 Identities=21% Similarity=0.204 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+...|..+...|++++|+..+.+++...+. ....+...|.++... ++++|+.++++++.+.+... .+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 70 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KA 70 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hH
Confidence 344567777789999999999999887532 125677888988887 89999999999999877665 37
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
+..+|.++... |++++|..++.+++...+
T Consensus 71 ~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 71 YYNLGLAYYKL-GKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHccCC
Confidence 89999999997 999999999999887654
No 121
>KOG0543|consensus
Probab=98.26 E-value=2.1e-05 Score=71.98 Aligned_cols=134 Identities=12% Similarity=0.140 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChH-------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSG--TKH-------DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~--~~~-------~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~ 106 (320)
...-|+.|...|+|..|...|++|+.....-. +.+ --..++.|++.|+.++ +|.+|+.+..+++++.+.|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 33347777777888888888888777654111 111 1135688889999999 8999999999999998887
Q ss_pred CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH-HHHHHHHHHHh
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK-AIQIYEEVGRT 183 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~-Ai~~y~~~~~~ 183 (320)
-. +++.-|.++... |+++.|+..|++++.+.|.+. .+-..+..+-.+..++.+ .-+.|.++...
T Consensus 291 ~K------ALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nk------a~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VK------ALYRRGQALLAL-GEYDLARDDFQKALKLEPSNK------AARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hh------HHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66 899999999996 999999999999999998863 344455555555555443 36777776543
No 122
>KOG1156|consensus
Probab=98.26 E-value=0.00011 Score=70.56 Aligned_cols=204 Identities=17% Similarity=0.103 Sum_probs=126.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|..+...|+-++|.++-..++.. ......+|.-.|.+++.. +|++|+.||+.|+.+.++|-+ .|..+
T Consensus 48 GL~L~~lg~~~ea~~~vr~glr~------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q------ilrDl 115 (700)
T KOG1156|consen 48 GLTLNCLGKKEEAYELVRLGLRN------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ------ILRDL 115 (700)
T ss_pred cchhhcccchHHHHHHHHHHhcc------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH------HHHHH
Confidence 45555567777777776666552 334556777778777777 788888888888888777665 67777
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
+.+-... ++++-..+.-.+.+++.+.. -..|...+..+...|+|..|+...+.........+ +...+=
T Consensus 116 slLQ~Qm-Rd~~~~~~tr~~LLql~~~~------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~----s~~~~e- 183 (700)
T KOG1156|consen 116 SLLQIQM-RDYEGYLETRNQLLQLRPSQ------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP----SKEDYE- 183 (700)
T ss_pred HHHHHHH-HhhhhHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----CHHHHH-
Confidence 7665554 77777777777777766553 34667777888888889988888777665432100 000000
Q ss_pred HHHHHHHh-----hhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHH
Q psy9376 200 RAALCHLC-----IDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLL 273 (320)
Q Consensus 200 ~a~~~~l~-----~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~ 273 (320)
-..+.++ ...+..++|++.....-+.+-+...+... .++. ...+++++|+..|...+..+|.+..-..
T Consensus 184 -~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~-----~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 184 -HSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL-----MKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH-----HHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 0111122 13455677777776544444333333222 3333 2578999999999999885555444433
Q ss_pred H
Q psy9376 274 R 274 (320)
Q Consensus 274 ~ 274 (320)
.
T Consensus 258 ~ 258 (700)
T KOG1156|consen 258 G 258 (700)
T ss_pred H
Confidence 3
No 123
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.26 E-value=0.00011 Score=76.92 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
+|..+...|... |++++|.++++++.+.-... -..++..+...|.+.|++++|.++|+++...........|
T Consensus 651 TynsLI~a~~k~-G~~eeA~~l~~eM~k~G~~p-----d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty-- 722 (1060)
T PLN03218 651 FFSALVDVAGHA-GDLDKAFEILQDARKQGIKL-----GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM-- 722 (1060)
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH--
Confidence 344445555554 66666666665554321111 1345666666666667777777666666543222222111
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHhC--CCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTIY--PAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~--~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
. .+...+...++.++|++-+.+.. ...|+..-+..+ +.++. ..+++++|.++++++.+
T Consensus 723 ----N--~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL---L~a~~--k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 723 ----N--ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL---LVASE--RKDDADVGLDLLSQAKE 782 (1060)
T ss_pred ----H--HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHH--HCCCHHHHHHHHHHHHH
Confidence 1 11111123345555555554331 222333333222 22232 35667777777776654
No 124
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.25 E-value=4.9e-06 Score=60.35 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET 125 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~ 125 (320)
.|+|+.|+..|+++++..+. ++ ....+..+|.||... ++++|++.+++ ..+.+.+ ..+...+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~------~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN------PDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC------HHHHHHHHHHHHH
Confidence 58999999999999998743 22 444666688999888 99999999998 5454433 2356677999999
Q ss_pred ccCCHHHHHHHHHHH
Q psy9376 126 DCVDQEKAVEHYEQA 140 (320)
Q Consensus 126 ~l~~~~~Ai~~y~kA 140 (320)
. |++++|+++|++|
T Consensus 71 l-~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 L-GKYEEAIKALEKA 84 (84)
T ss_dssp T-T-HHHHHHHHHHH
T ss_pred h-CCHHHHHHHHhcC
Confidence 6 9999999999875
No 125
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.24 E-value=0.00024 Score=74.47 Aligned_cols=210 Identities=10% Similarity=0.064 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHH
Q psy9376 27 GNKIDEAIECYTRA---------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~ 90 (320)
.|+++.|...|.+. ...|...|+.+.|.+.|.++.+. |-.. ....|..+...|.+. +++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~----Gv~P-dvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA----GVEA-NVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCcCHH
Confidence 45666666666544 23455567777777766665532 1111 234556666666666 777
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|++.|.+.... |-... ..+|..+-..|.+. |++++|.++|++....-.... + -..++..+...|.+.|++
T Consensus 525 eAl~lf~~M~~~----Gv~PD-~vTYnsLI~a~~k~-G~~deA~~lf~eM~~~~~gi~-P--D~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 525 KAFGAYGIMRSK----NVKPD-RVVFNALISACGQS-GAVDRAFDVLAEMKAETHPID-P--DHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCC-C--cHHHHHHHHHHHHHCCCH
Confidence 777777665332 21111 23566777777776 888888888877654211100 0 134667777778888888
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCC--ccCcHHHHHHHHHHHHHHhcCH
Q psy9376 171 NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPA--FQDSREYKLLRILIEHIEEQNV 248 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~--f~~s~e~~~l~~l~~a~~~~d~ 248 (320)
++|.++|+++...........| . .+...+...++.++|++-|.+.... .|+..- ...++.++. ..
T Consensus 596 deA~elf~~M~e~gi~p~~~ty------n--sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T---ynsLI~a~~--k~ 662 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVY------T--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF---FSALVDVAG--HA 662 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHH------H--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHH--hC
Confidence 8888888877765432222111 1 1111222345555566655543221 223222 233333332 35
Q ss_pred hHHHHHHHHHhhhcc
Q psy9376 249 DGFTEAVKDYDSISR 263 (320)
Q Consensus 249 ~~~~~Ai~~ye~~~~ 263 (320)
+++++|++.++.+.+
T Consensus 663 G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 663 GDLDKAFEILQDARK 677 (1060)
T ss_pred CCHHHHHHHHHHHHH
Confidence 677777777777654
No 126
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=98.23 E-value=0.0021 Score=57.05 Aligned_cols=223 Identities=15% Similarity=0.131 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA~~~~~kA~~l~~ 104 (320)
+++|++|++++...+..+...|++..|.+.-.-.++++.+.+.+.... ...++..++... .-++-..+..+|+.-..
T Consensus 3 ~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~ 81 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSK 81 (260)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHc
Confidence 579999999999999999999999999999999999988766554322 345666666665 22345566677777763
Q ss_pred HcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 105 DMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 105 ~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
..+.+.+-...+..+|..|-+. +++.+|..+|-.+ .. . ....+..+-......|...++
T Consensus 82 ~~~~~~Gdp~LH~~~a~~~~~e-~~~~~A~~Hfl~~-----~~--~--~~~~~~~ll~~~~~~~~~~e~----------- 140 (260)
T PF04190_consen 82 FGSYKFGDPELHHLLAEKLWKE-GNYYEAERHFLLG-----TD--P--SAFAYVMLLEEWSTKGYPSEA----------- 140 (260)
T ss_dssp TSS-TT--HHHHHHHHHHHHHT-T-HHHHHHHHHTS------H--H--HHHHHHHHHHHHHHHTSS--H-----------
T ss_pred cCCCCCCCHHHHHHHHHHHHhh-ccHHHHHHHHHhc-----CC--h--hHHHHHHHHHHHHHhcCCcch-----------
Confidence 3344566677888999988887 8888887777321 10 0 011111111111122222211
Q ss_pred hhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHh----CC--------CccCcHHHHHHHHHHHHHHhcCHhHH
Q psy9376 185 LDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTI----YP--------AFQDSREYKLLRILIEHIEEQNVDGF 251 (320)
Q Consensus 185 ~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~----~~--------~f~~s~e~~~l~~l~~a~~~~d~~~~ 251 (320)
--+..++++.+|+. ....+..+++.|.+. .| .++...--.++.-|+.+++.++...|
T Consensus 141 ----------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F 210 (260)
T PF04190_consen 141 ----------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLF 210 (260)
T ss_dssp ----------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHH
T ss_pred ----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHH
Confidence 12234667777776 677788888888755 22 23334455666777778888899999
Q ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHhhcC
Q psy9376 252 TEAVKDYDSISRLDQWYTTVLLRIKKQVGR 281 (320)
Q Consensus 252 ~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~ 281 (320)
..-.+.|...++-||-....+.+|.+.+=+
T Consensus 211 ~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 211 KKLCEKYKPSLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp HHHHHHTHH---HHHHTHHHHHHHHHHHH-
T ss_pred HHHHHHhCccccccHHHHHHHHHHHHHHCC
Confidence 999999999999899999999999977644
No 127
>KOG1127|consensus
Probab=98.22 E-value=8.7e-05 Score=74.41 Aligned_cols=162 Identities=16% Similarity=0.138 Sum_probs=107.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|..|+...|...|..||.+|-++. ...+.+..-++..|.+. ++++|..-...+.+..+. ...-.-|...
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLD------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a----~~~k~nW~~r 568 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELD------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA----FACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH----HHHHhhhhhc
Confidence 566666666677777777776662 12344444555666665 566655543333322221 1111236668
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
|..|-+. ++..+||..|+-|+..-|.+ .+++..+|+.|...|+|.-|++.|+++....|.+...+ |+
T Consensus 569 G~yyLea-~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~------fk 635 (1238)
T KOG1127|consen 569 GPYYLEA-HNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR------FK 635 (1238)
T ss_pred cccccCc-cchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH------HH
Confidence 8888887 99999999999999988875 57899999999999999999999999987777655432 22
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCcc
Q psy9376 200 RAALCHLCIDVINAHNAIDRYKTIYPAFQ 228 (320)
Q Consensus 200 ~a~~~~l~~d~~~~~~A~~~y~~~~~~f~ 228 (320)
.+.+- .|.|.+..+++.+..+...+.
T Consensus 636 ~A~~e---cd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 636 EAVME---CDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHHH---HHhhhHHHHHHHHHHHHHHHH
Confidence 22211 267888888888766544443
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.00015 Score=58.36 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 72 DAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
.+...|..+-..+...++..+...+++.+.- .++..-+..+...+|.++... |++++|+..|++++.-.+ ++.
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~---d~~ 82 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAP---DPE 82 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCC---CHH
Confidence 4555566655555545677666656655543 444445667888999999998 999999999999998552 334
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
....+...+|.++...|+|++|+..++.+
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 45567888999999999999999999763
No 129
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.13 E-value=6.8e-05 Score=75.98 Aligned_cols=137 Identities=13% Similarity=0.056 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CH
Q psy9376 26 GGNKIDEAIECYTRA---------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DN 89 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~ 89 (320)
..|++++|.++|.+. ...+...|++++|.+.+..+.+.. -. .....+..+...|.+. +.
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g----~~-~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG----FP-LDIVANTALVDLYSKWGRM 376 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC----CC-CCeeehHHHHHHHHHCCCH
Confidence 478999999998765 345566788888888777766542 11 1233455555666665 66
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC
Q psy9376 90 EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 90 ~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~ 169 (320)
++|.+.|++..+ ++ ..+|..+...|-.. |+.++|+++|++....-.. + -..++..+...+...|+
T Consensus 377 ~~A~~vf~~m~~-------~d--~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~g~~---P--d~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 377 EDARNVFDRMPR-------KN--LISWNALIAGYGNH-GRGTKAVEMFERMIAEGVA---P--NHVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHHHHhCCC-------CC--eeeHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC---C--CHHHHHHHHHHHhcCCc
Confidence 777766665432 10 12466666666666 7777777777765542111 1 13345566666666666
Q ss_pred HHHHHHHHHHHHH
Q psy9376 170 YNKAIQIYEEVGR 182 (320)
Q Consensus 170 y~~Ai~~y~~~~~ 182 (320)
.++|.++|+++..
T Consensus 442 ~~~a~~~f~~m~~ 454 (697)
T PLN03081 442 SEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.08 E-value=0.00014 Score=70.75 Aligned_cols=143 Identities=10% Similarity=-0.029 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC---C------HHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKMA---KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT---D------NEAAIDC 95 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~---g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~---~------~~eA~~~ 95 (320)
+...+|.++|-++- -+... +++..|+.+|++|+++. |. -+.++..++.+|... . ...+.+.
T Consensus 334 ~~~~~Ay~~~lrg~-~~~~~~~~~~~~~A~~lle~Ai~ld-----P~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 334 PHQGAALTLFYQAH-HYLNSGDAKSLNKASDLLEEILKSE-----PD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred CCCHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHhC-----CC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 45578999998863 33333 45889999999999994 32 344455545554332 1 2233444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHH
Q psy9376 96 LSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQ 175 (320)
Q Consensus 96 ~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~ 175 (320)
.++++.+-....+ +.++.-+|...... |++++|...+++|+++-+. ...+..+|.++...|++++|++
T Consensus 407 ~~~a~al~~~~~~----~~~~~ala~~~~~~-g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 407 LDNIVALPELNVL----PRIYEILAVQALVK-GKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHhhhcccCcCC----hHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHHHH
Confidence 4444333111111 35677788887777 9999999999999998753 4689999999999999999999
Q ss_pred HHHHHHHhhhhhhh
Q psy9376 176 IYEEVGRTSLDSSL 189 (320)
Q Consensus 176 ~y~~~~~~~~~~~~ 189 (320)
.|+++.+..|..+.
T Consensus 475 ~~~~A~~L~P~~pt 488 (517)
T PRK10153 475 AYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHhcCCCCch
Confidence 99999998887664
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=0.00022 Score=72.63 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREY 233 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~ 233 (320)
...+.-+=..|...++|++++.+++.++...+.+.-. .+ +-.+.|......++.-.++
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a-------~~---------------~l~~~y~~kY~~~~~~ee~ 280 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA-------RE---------------ELIRFYKEKYKDHSLLEDY 280 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh-------HH---------------HHHHHHHHHccCcchHHHH
Confidence 3344444466777888899999999988776654321 11 2223344333444433343
Q ss_pred HHHHHHHHHHHhcCH-hHHHHHHHHHhhhcchhhh
Q psy9376 234 KLLRILIEHIEEQNV-DGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 234 ~~l~~l~~a~~~~d~-~~~~~Ai~~ye~~~~ld~~ 267 (320)
.-+.+| ++. ..+..+|..|++-+-.+|-
T Consensus 281 l~~s~l------~~~~~~~~~~i~~fek~i~f~~G 309 (906)
T PRK14720 281 LKMSDI------GNNRKPVKDCIADFEKNIVFDTG 309 (906)
T ss_pred HHHhcc------ccCCccHHHHHHHHHHHeeecCC
Confidence 333332 244 6889999999987665443
No 132
>KOG4162|consensus
Probab=98.08 E-value=9.7e-05 Score=72.28 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~ 108 (320)
+..-....-.++..+...++.++|..|..+|..+. ...+..|...|.++... ...+|.++|.-|+.+.|+.-.
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 44556677778899999999999999999999885 35677888888888877 899999999999999987655
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHH--HHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVE--HYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~--~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+...+|.++... |+..-|.. ....|+++-+.. -++|..+|.++..+|+.+.|.++|+-+......
T Consensus 720 ------s~~Ala~~lle~-G~~~la~~~~~L~dalr~dp~n------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 720 ------SMTALAELLLEL-GSPRLAEKRSLLSDALRLDPLN------HEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ------HHHHHHHHHHHh-CCcchHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 788899999996 98887877 999999998875 469999999999999999999999999988888
Q ss_pred hhhhhcch
Q psy9376 187 SSLLKYSA 194 (320)
Q Consensus 187 ~~~~~~~~ 194 (320)
.|+..|+.
T Consensus 787 ~PV~pFs~ 794 (799)
T KOG4162|consen 787 NPVLPFSN 794 (799)
T ss_pred CCcccccc
Confidence 88776653
No 133
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=4.3e-05 Score=66.68 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 76 NLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 76 ~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
.|..+-..|+..++.+|...|..=+.-||+.- -++++++-||+++-.+ |+++.|...|..++.-+++..+ +.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~K---Apd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPK---APD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCC---ChH
Confidence 56666666666699999999999988887543 3566899999999998 9999999999999998888654 678
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.+.++|.+..++|+.++|..+|+++....|+.+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999999887654
No 134
>KOG0550|consensus
Probab=98.03 E-value=0.0003 Score=64.48 Aligned_cols=169 Identities=16% Similarity=0.162 Sum_probs=118.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChH------HHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFT------MAAK 114 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~------~aa~ 114 (320)
.++-..|++++|..--...+++. + ..+.+..--|.|+.-. +.+.|+..|++++.+.|+..... ..-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-----~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-----A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-----c-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHH
Confidence 45555677777776444444332 1 2233444445665555 88999999999999988654322 2223
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
.+.+-|+-.-+. |++.+|-++|..|+.+-|.. ....+.+|.+.+.+..++|+..+|+.--++++.+.+. .
T Consensus 251 ~~k~~gN~~fk~-G~y~~A~E~Yteal~idP~n--~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s--y----- 320 (486)
T KOG0550|consen 251 VKKERGNDAFKN-GNYRKAYECYTEALNIDPSN--KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS--Y----- 320 (486)
T ss_pred HHHhhhhhHhhc-cchhHHHHHHHHhhcCCccc--cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH--H-----
Confidence 466667766666 99999999999999998884 4456789999999999999999999999999876442 1
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ 228 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~ 228 (320)
...+.+.+.|++ +.++.+.|++.|++....-.
T Consensus 321 ikall~ra~c~l--~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 321 IKALLRRANCHL--ALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcc
Confidence 123455677775 46778888888877654433
No 135
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.01 E-value=8.3e-05 Score=59.00 Aligned_cols=112 Identities=18% Similarity=0.187 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKY 192 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~ 192 (320)
+..+..-|.-.... |+|++|++.|+..-..||-..- +.++...+|.+|.+.|+|++|+..+++.++..|+++..-|
T Consensus 10 ~~~ly~~a~~~l~~-~~Y~~A~~~le~L~~ryP~g~y---a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQK-GNYEEAIKQLEALDTRYPFGEY---AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 34566666655565 9999999999999999887542 4578899999999999999999999999999888775432
Q ss_pred chhHhHHHHHHHHHh-------------hhhHHHHHHHHHHHHhCCCccCcHH
Q psy9376 193 SAKEYFFRAALCHLC-------------IDVINAHNAIDRYKTIYPAFQDSRE 232 (320)
Q Consensus 193 ~~~~~~~~a~~~~l~-------------~d~~~~~~A~~~y~~~~~~f~~s~e 232 (320)
.++..|+++.. .|+....+|+..+++++..||+|..
T Consensus 86 ----a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 86 ----AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred ----HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 23344444332 1566778888888888888887754
No 136
>KOG1127|consensus
Probab=97.98 E-value=0.00049 Score=69.26 Aligned_cols=219 Identities=12% Similarity=0.106 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~ 108 (320)
.|.+|+...............+.++--||.++++..............+.--+..+.+.+...|...+-+++.+.+..+.
T Consensus 414 ~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~ap 493 (1238)
T KOG1127|consen 414 VYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAP 493 (1238)
T ss_pred hchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhH
Confidence 44444444444444444445555555666655443221111111111111111222222567788888899888877665
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
++.-+|.+|+.. -+...|-.||.+|.++-+.+ +.....+++.|.+..+++.|...........+-
T Consensus 494 ------af~~LG~iYrd~-~Dm~RA~kCf~KAFeLDatd------aeaaaa~adtyae~~~we~a~~I~l~~~qka~a-- 558 (1238)
T KOG1127|consen 494 ------AFAFLGQIYRDS-DDMKRAKKCFDKAFELDATD------AEAAAASADTYAEESTWEEAFEICLRAAQKAPA-- 558 (1238)
T ss_pred ------HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhccccHHHHHHHHHHHhhhchH--
Confidence 899999999997 78899999999999987664 456667899999999999998875554433221
Q ss_pred hhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhH
Q psy9376 189 LLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWY 268 (320)
Q Consensus 189 ~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~ 268 (320)
+..+..|...+..+ ...++..+++..++.+...-|.+.+++ ..+.+|+- ..|.|..|++.|.+++.++|-.
T Consensus 559 ---~~~k~nW~~rG~yy--Lea~n~h~aV~~fQsALR~dPkD~n~W--~gLGeAY~--~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 559 ---FACKENWVQRGPYY--LEAHNLHGAVCEFQSALRTDPKDYNLW--LGLGEAYP--ESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred ---HHHHhhhhhccccc--cCccchhhHHHHHHHHhcCCchhHHHH--HHHHHHHH--hcCceehHHHhhhhhHhcCcHh
Confidence 22233333323332 245667778888888766666665554 34444443 4689999999999998877754
Q ss_pred HHH
Q psy9376 269 TTV 271 (320)
Q Consensus 269 ~~~ 271 (320)
+-.
T Consensus 630 ~y~ 632 (1238)
T KOG1127|consen 630 KYG 632 (1238)
T ss_pred HHH
Confidence 433
No 137
>KOG1128|consensus
Probab=97.96 E-value=0.00015 Score=70.71 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy9376 94 DCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKA 173 (320)
Q Consensus 94 ~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~A 173 (320)
.||++|.++...-. +++...+|...... ++++++..+++.++++.+.. ...|..+|.+..+++++..|
T Consensus 471 s~yEkawElsn~~s-----arA~r~~~~~~~~~-~~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 471 SLYEKAWELSNYIS-----ARAQRSLALLILSN-KDFSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHHhhhhh-----HHHHHhhccccccc-hhHHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhhhHHH
Confidence 45555555543211 12334444433333 56666666666666665542 44566666666666666666
Q ss_pred HHHHHHHHHhhhhhh
Q psy9376 174 IQIYEEVGRTSLDSS 188 (320)
Q Consensus 174 i~~y~~~~~~~~~~~ 188 (320)
.++|.......|++.
T Consensus 539 v~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNA 553 (777)
T ss_pred HHHHHHHhhcCCCch
Confidence 666666655555443
No 138
>KOG3616|consensus
Probab=97.96 E-value=0.00021 Score=69.76 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=33.5
Q ss_pred HHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 138 EQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 138 ~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
.+|+.+.....+...+...|-.+++-|...|+|+.|.++|.++..
T Consensus 749 ~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 749 KKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL 793 (1636)
T ss_pred hhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch
Confidence 444555555555555667788889999999999999999988764
No 139
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.96 E-value=0.011 Score=57.49 Aligned_cols=255 Identities=15% Similarity=0.109 Sum_probs=141.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH----hcC-
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCF----KKT- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y----~~~- 87 (320)
+|++++|++.+... |.++..+|++++|...|...++.++.. ...|..+..+. .-.
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn------~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN------YDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHhhhccccc
Confidence 68999999998664 778889999999999999998875321 22222222222 100
Q ss_pred -CHHHHHHHHHHHHHHHHHcCC--------------------------hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q psy9376 88 -DNEAAIDCLSKAIVIYTDMGR--------------------------FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQA 140 (320)
Q Consensus 88 -~~~eA~~~~~kA~~l~~~~~~--------------------------~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA 140 (320)
+.+.-.+.|++....+|.... ..+++..+.++-.+|... .+..-...+.+.-
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~-~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDP-EKAAIIESLVEEY 169 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcCh-hHHHHHHHHHHHH
Confidence 123333333333332222111 111222455555555542 2211111112211
Q ss_pred HhHhhc-----------cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhh
Q psy9376 141 ATYFKG-----------EESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCID 209 (320)
Q Consensus 141 ~~~~~~-----------~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d 209 (320)
..-... ...+....-++.-++..|...|++++|+++.++++...|...-+ +. .+.++...
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el-------y~--~KarilKh 240 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL-------YM--TKARILKH 240 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH-------HH--HHHHHHHH
Confidence 111111 11233334577889999999999999999999999876543321 11 23334443
Q ss_pred hHHHHHHHHHHHHhCCCccCcH--HHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCch
Q psy9376 210 VINAHNAIDRYKTIYPAFQDSR--EYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSS 287 (320)
Q Consensus 210 ~~~~~~A~~~y~~~~~~f~~s~--e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~ 287 (320)
.|+..+|.+....+..--...+ ..++..-++ -.+++++|.+..-...+ .+.++.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L------Ra~~~e~A~~~~~~Ftr----------------~~~~~~~~ 298 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLL------RAGRIEEAEKTASLFTR----------------EDVDPLSN 298 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH------HCCCHHHHHHHHHhhcC----------------CCCCcccC
Confidence 4555555554443211111111 112222222 25788899888877765 01145556
Q ss_pred hhhchhHHHhHHHHHHHHhH-HHHHHHHHhhhc
Q psy9376 288 LLKYSAKEYFFRAALCHLCI-DVINAYTQYKAN 319 (320)
Q Consensus 288 l~~~~~~~y~~~a~~c~~~~-~~~~~~~~~~~~ 319 (320)
|.-+-.-=|....|.||+-. |...|+.||.++
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666677889999999999 777799998765
No 140
>PLN03077 Protein ECB2; Provisional
Probab=97.95 E-value=0.002 Score=66.90 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=85.7
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
|..+...|... +.++|++.|++..+ .|-.... .++..+-..+... |..++|.++|++..+.+.-..+ ..
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~----~g~~Pd~-~T~~~ll~a~~~~-g~v~ea~~~f~~M~~~~gi~P~----~~ 626 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVE----SGVNPDE-VTFISLLCACSRS-GMVTQGLEYFHSMEEKYSITPN----LK 626 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCc-ccHHHHHHHHhhc-ChHHHHHHHHHHHHHHhCCCCc----hH
Confidence 33344444443 55556555555432 1111111 1233344455665 7777777777776644433222 35
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHH
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKL 235 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~ 235 (320)
.|..+.+++.+.|++++|.+.++++. ..|+ ...|.+ + ..-|++..+...++.+.+...++.|. ....+.+
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd--~~~~~a---L--l~ac~~~~~~e~~e~~a~~l~~l~p~--~~~~y~l 696 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKMP-ITPD--PAVWGA---L--LNACRIHRHVELGELAAQHIFELDPN--SVGYYIL 696 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCC-CCCC--HHHHHH---H--HHHHHHcCChHHHHHHHHHHHhhCCC--CcchHHH
Confidence 67778888888888888888887752 1222 111211 1 12344434555556666666555443 2334455
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHhhhc
Q psy9376 236 LRILIEHIEEQNVDGFTEAVKDYDSIS 262 (320)
Q Consensus 236 l~~l~~a~~~~d~~~~~~Ai~~ye~~~ 262 (320)
+.+++. ..|++++|.++.+.+.
T Consensus 697 l~n~ya-----~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 697 LCNLYA-----DAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHH-----HCCChHHHHHHHHHHH
Confidence 566552 3678888888876654
No 141
>KOG1156|consensus
Probab=97.94 E-value=0.001 Score=64.17 Aligned_cols=201 Identities=10% Similarity=0.116 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
-..+|.++..+|. .++|.+.+..-+..++=+.+ .++.+.--|..+..+ +.++|.++-+.++...+..+-
T Consensus 7 E~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~e------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v--- 76 (700)
T KOG1156|consen 7 ENALFRRALKCYE-TKQYKKGLKLIKQILKKFPE------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV--- 76 (700)
T ss_pred HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHhCCc------cchhHHhccchhhcccchHHHHHHHHHHhccCcccch---
Confidence 3445555555443 47788888877777773332 233344445555555 889999999999886665554
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhh
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLK 191 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~ 191 (320)
+|.-+|.+++.. .+|++||.||..|+.+-+++ .+.+..++-+...+++|+.....-.+.....++..
T Consensus 77 ---CwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r--- 143 (700)
T KOG1156|consen 77 ---CWHVLGLLQRSD-KKYDEAIKCYRNALKIEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR--- 143 (700)
T ss_pred ---hHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH---
Confidence 999999999998 99999999999999997774 67999999999999999999988877776555433
Q ss_pred cchhHhHHHHHHH-HHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHH-HHHHHHhcCHhHHHHHHHHHhh
Q psy9376 192 YSAKEYFFRAALC-HLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRI-LIEHIEEQNVDGFTEAVKDYDS 260 (320)
Q Consensus 192 ~~~~~~~~~a~~~-~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~-l~~a~~~~d~~~~~~Ai~~ye~ 260 (320)
..|+..+.. ++.-+...+-+-++.|++....-++..++.-... +.........+.+++|++....
T Consensus 144 ----a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 144 ----ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 224333332 2222344444556666655443344333321111 1111111134567777776543
No 142
>KOG3060|consensus
Probab=97.94 E-value=0.0068 Score=52.49 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
|+.-+||+....-++.|..+ .++|..++++|...|+|++|+-+|++..-+.
T Consensus 134 GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMND------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 55555555555555555543 3455555555555555555555555555433
No 143
>KOG4555|consensus
Probab=97.93 E-value=0.00054 Score=53.25 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=78.8
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 81 ANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 81 a~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
|.+..+. +.++|++.|.+|+.+.|+..+ +|.|-+..++-+ |+.++|++-+.+|+++.... ...+-..+..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raS------ayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~--trtacqa~vQ 120 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERAS------AYNNRAQALRLQ-GDDEEALDDLNKALELAGDQ--TRTACQAFVQ 120 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchH------hhccHHHHHHHc-CChHHHHHHHHHHHHhcCcc--chHHHHHHHH
Confidence 4444454 789999999999999988766 899999999988 99999999999999986543 4556778889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 160 VAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 160 la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
-|.+|..+|+-+.|..-|+.+...+
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhC
Confidence 9999999999999999999887654
No 144
>KOG1128|consensus
Probab=97.93 E-value=0.00055 Score=66.84 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=110.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy9376 43 MFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK-TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAE 121 (320)
Q Consensus 43 ~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~-~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~ 121 (320)
.|...||.-.--.+|++|.++.... .+.+-.-.|..... .+++++.++++.++++.+-.-. .|+..|-
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~------~wf~~G~ 527 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG------TWFGLGC 527 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh------HHHhccH
Confidence 5556677777777777777775321 12222222222222 4899999999999998875544 8999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHH
Q psy9376 122 IYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRA 201 (320)
Q Consensus 122 ~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a 201 (320)
+.-+. ++++.|+.+|.+.+.+-|.. +..+.+++..|.+.|+-.+|-..++++.+..-+ +-..|. +|
T Consensus 528 ~ALql-ek~q~av~aF~rcvtL~Pd~------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWE--Ny---- 593 (777)
T KOG1128|consen 528 AALQL-EKEQAAVKAFHRCVTLEPDN------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWE--NY---- 593 (777)
T ss_pred HHHHH-hhhHHHHHHHHHHhhcCCCc------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeee--ch----
Confidence 99985 99999999999999998875 679999999999999999999999999875422 211121 11
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhCC
Q psy9376 202 ALCHLCIDVINAHNAIDRYKTIYP 225 (320)
Q Consensus 202 ~~~~l~~d~~~~~~A~~~y~~~~~ 225 (320)
..+..|.+..++|+..|.++.+
T Consensus 594 --mlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 594 --MLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred --hhhhhhcccHHHHHHHHHHHHH
Confidence 1123366777777777765533
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=9.9e-06 Score=55.54 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=47.2
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 80 AANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 80 aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
.|..+... ++++|+++|++++...|++. .++..+|.++..+ |++++|+.+|++++++.|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~------~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNP------EAWYLLGRILYQQ-GRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHH------HHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcC
Confidence 34555555 88999999999887776544 4899999999987 9999999999999988775
No 146
>KOG4555|consensus
Probab=97.92 E-value=0.00035 Score=54.27 Aligned_cols=102 Identities=22% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
+...++.-|......|+.+.|++.|.+++.+.+ .-+.+|++-+..++.. ++++|++-+++|+++.- +....
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trt 113 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAP------ERASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRT 113 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchH
Confidence 344455668888999999999999999999963 3567899999999988 99999999999998863 34556
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
+-+++..-|.+|+.. |+-+.|..-|+.|.++
T Consensus 114 acqa~vQRg~lyRl~-g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLL-GNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHh-CchHHHHHhHHHHHHh
Confidence 777899999999997 9999999999999876
No 147
>KOG3617|consensus
Probab=97.90 E-value=0.0052 Score=61.12 Aligned_cols=157 Identities=19% Similarity=0.210 Sum_probs=99.5
Q ss_pred CCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHH----HHHHHcCChHHHHHHHHHH---------
Q psy9376 26 GGNKIDEAIECYTRA------------ANMFKMAKKWNNAGKAFVEAA----NLHMKSGTKHDAACNLLDA--------- 80 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a------------g~~~~~~g~~~~A~~~y~kA~----~~~~~~~~~~~aa~~~~~a--------- 80 (320)
+.|.+++|.+.-+.- +.-+...+|.+.|+++|+|+. ++.+=+...+.+.+-|.+-
T Consensus 838 s~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W 917 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW 917 (1416)
T ss_pred hcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH
Confidence 468888888763221 334456788899999998873 3333233333333333321
Q ss_pred -HHHHhcC-CHHHHHHHHHHHHHHHH------HcCChHHHHH---------HHHHHHHHHHhccCCHHHHHHHHHHH---
Q psy9376 81 -ANCFKKT-DNEAAIDCLSKAIVIYT------DMGRFTMAAK---------HHQTIAEIYETDCVDQEKAVEHYEQA--- 140 (320)
Q Consensus 81 -a~~y~~~-~~~eA~~~~~kA~~l~~------~~~~~~~aa~---------~~~~la~~y~~~l~~~~~Ai~~y~kA--- 140 (320)
|...... +.+.|+.+|..|-+.+. -.|+.+.+++ +-+.+|..|++. |+..+|+..|.+|
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~-g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEND-GDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Confidence 2222222 77888888888877553 2344444443 356789999998 9999999998765
Q ss_pred ---HhHhhccCCchHHH--------HHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Q psy9376 141 ---ATYFKGEESNSSAN--------KCLLKVAHHAALLQ-NYNKAIQIYEEVGRT 183 (320)
Q Consensus 141 ---~~~~~~~~~~~~a~--------~~~~~la~~~~~~g-~y~~Ai~~y~~~~~~ 183 (320)
+.+.++++-..+.. .-+...+..|...| ..++|+.+|.+++.+
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcch
Confidence 56666655333222 22445566677777 889999999998754
No 148
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00018 Score=62.24 Aligned_cols=126 Identities=12% Similarity=-0.004 Sum_probs=97.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK-TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~-~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
...+...|+-+.+.....+++.-+.+ ........|..... .++.+|+..+++|..+.|.++. .|..+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~------d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~------~~~~l 140 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPK------DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE------AWNLL 140 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcc------cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh------hhhHH
Confidence 45566678888888887777655421 11122223444444 4899999999999999988877 79999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
|.+|.+. |+.++|-..|.+|+++++.+. .+..++|..+.-.|+++.|..++.++-....
T Consensus 141 gaaldq~-Gr~~~Ar~ay~qAl~L~~~~p------~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQL-GRFDEARRAYRQALELAPNEP------SIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHc-cChhHHHHHHHHHHHhccCCc------hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9999996 999999999999999988864 5888999999999999999999998865544
No 149
>KOG0495|consensus
Probab=97.85 E-value=0.0015 Score=63.33 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~ 126 (320)
.+++.|...|.+|-.. .+....|...++.-.-. +.++|++++++++..||.... .|..+|.+++..
T Consensus 632 ~e~eraR~llakar~~-------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K------l~lmlGQi~e~~ 698 (913)
T KOG0495|consen 632 DELERARDLLAKARSI-------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK------LWLMLGQIEEQM 698 (913)
T ss_pred ccHHHHHHHHHHHhcc-------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH------HHHHHhHHHHHH
Confidence 4555665555555442 13345555555555555 677788888888777776554 677788888876
Q ss_pred cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 127 CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 127 l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
++.+.|.+.|.+-+...|.. .-.+..++.+=.+.|+..+|...++++.-..|.+.
T Consensus 699 -~~ie~aR~aY~~G~k~cP~~------ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 699 -ENIEMAREAYLQGTKKCPNS------IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred -HHHHHHHHHHHhccccCCCC------chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 78888888877777666653 34566667776677777777777777665555544
No 150
>PRK15331 chaperone protein SicA; Provisional
Probab=97.84 E-value=0.00044 Score=56.17 Aligned_cols=129 Identities=13% Similarity=0.012 Sum_probs=95.4
Q ss_pred CchHHHHhHHHHHHHhhhhhhcccc-C--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 1 MTDEKLVCEKQLAAALLRVVFITKV-G--GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNL 77 (320)
Q Consensus 1 ~~~~~l~~~~~~~~k~~~~~~~~~~-~--~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~ 77 (320)
||...=+...++++.+.+..-.|-. . .|=.++-++..-..|--+...|++++|...|+-..-. ++ ...+.+
T Consensus 1 ~~~~~~~~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~-~n~~Y~ 74 (165)
T PRK15331 1 MDYQNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DF-YNPDYT 74 (165)
T ss_pred CCcchhhhHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cc-CcHHHH
Confidence 4554334445556555543222110 0 3455667777667777788899999999999876654 22 235678
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q psy9376 78 LDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAAT 142 (320)
Q Consensus 78 ~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~ 142 (320)
..+|.|+... ++++|+.+|-.|..+.+++.. ..+.+|.+|... |+.++|..+|+.+++
T Consensus 75 ~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~------p~f~agqC~l~l-~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 75 MGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR------PVFFTGQCQLLM-RKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC------ccchHHHHHHHh-CCHHHHHHHHHHHHh
Confidence 8889998888 999999999999999887666 489999999996 999999999999998
No 151
>KOG1174|consensus
Probab=97.83 E-value=0.0046 Score=57.03 Aligned_cols=257 Identities=16% Similarity=0.105 Sum_probs=151.3
Q ss_pred CCCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRA-ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~ 104 (320)
.++...=.....++ +.++ .+++..|+..+.-+-.. ..+++ ....+...|.|+... ++.+|+--|+++..+.|
T Consensus 190 ~~~~~dwls~wika~Aq~~--~~~hs~a~~t~l~le~~-~~lr~---NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp 263 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMF--NFKHSDASQTFLMLHDN-TTLRC---NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP 263 (564)
T ss_pred cCCCccHHHHHHHHHHHHH--hcccchhhhHHHHHHhh-ccCCc---cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh
Confidence 34444445554444 3333 34444444443322211 11222 233455556666555 66777777776665433
Q ss_pred H--------------cCChHH---------------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 105 D--------------MGRFTM---------------AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 105 ~--------------~~~~~~---------------aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
. .|+..+ ++.....+...|.+ .++..|+.+-+++++.-+.. ..
T Consensus 264 y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~--K~~~rAL~~~eK~I~~~~r~------~~ 335 (564)
T KOG1174|consen 264 DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE--KKFERALNFVEKCIDSEPRN------HE 335 (564)
T ss_pred hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh--hhHHHHHHHHHHHhccCccc------ch
Confidence 2 122111 11112222334444 68899999999998876553 46
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHH
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKL 235 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~ 235 (320)
.+..-|.++...|+.++|+-.|+.+....|..= ..+ -|+++-|...+..++|+--..+....|+.+-....
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL-------~~Y--~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt 406 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRL-------EIY--RGLFHSYLAQKRFKEANALANWTIRLFQNSARSLT 406 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhH-------HHH--HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhh
Confidence 788889999999999999999999987543210 111 13444444456677777666666677776654433
Q ss_pred H-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCC---CCCchhhhchhHHHhHHHHHHHHhH---H
Q psy9376 236 L-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRT---SLDSSLLKYSAKEYFFRAALCHLCI---D 308 (320)
Q Consensus 236 l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~---~~~~~l~~~~~~~y~~~a~~c~~~~---~ 308 (320)
+ +..+ ...|+..-++|-+.|++.++++|..+...+.|-+...-. .+.-+||.=.+++ -..|-|=+ |
T Consensus 407 L~g~~V---~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~----~~D~~LH~~Lgd 479 (564)
T KOG1174|consen 407 LFGTLV---LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII----FPDVNLHNHLGD 479 (564)
T ss_pred hhccee---eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh----ccccHHHHHHHH
Confidence 3 3222 234788889999999999999999999988888876643 3333555444443 35555544 5
Q ss_pred HHHHH
Q psy9376 309 VINAY 313 (320)
Q Consensus 309 ~~~~~ 313 (320)
+..|+
T Consensus 480 ~~~A~ 484 (564)
T KOG1174|consen 480 IMRAQ 484 (564)
T ss_pred HHHHh
Confidence 55433
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=97.81 E-value=0.00023 Score=57.75 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHH
Q psy9376 75 CNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSAN 154 (320)
Q Consensus 75 ~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~ 154 (320)
..|..+-+.|...++++|...|+-.+.+.+-+.+ ++..||.++... ++|++|+.+|..|..+-+.+..
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~------Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l~~~dp~----- 106 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD------YTMGLAAVCQLK-KQFQKACDLYAVAFTLLKNDYR----- 106 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH------HHHHHHHHHHHH-HHHHHHHHHHHHHHHcccCCCC-----
Confidence 3455555666667999999999988877666544 799999999997 9999999999999998776654
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
....+|.++..+|+.+.|..+|+.+...
T Consensus 107 -p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 107 -PVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred -ccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 4677999999999999999999998864
No 153
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.00019 Score=62.01 Aligned_cols=112 Identities=12% Similarity=0.003 Sum_probs=53.8
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy9376 45 KMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIY 123 (320)
Q Consensus 45 ~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y 123 (320)
-..|+|..|+..+.++..+. | ...+.|...|.+|.+. ++++|-..|.+|+++.+.... +..|+|..|
T Consensus 111 ~~~g~~~~A~~~~rkA~~l~-----p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~------~~nNlgms~ 178 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARLA-----P-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS------IANNLGMSL 178 (257)
T ss_pred HHhcchHHHHHHHHHHhccC-----C-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch------hhhhHHHHH
Confidence 33455555555555555442 1 1234445555555554 555555555555555544443 455555555
Q ss_pred HhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHH
Q psy9376 124 ETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQ 175 (320)
Q Consensus 124 ~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~ 175 (320)
.-. |+++.|..++..+...-+.. ..+..+++.+....|++++|-.
T Consensus 179 ~L~-gd~~~A~~lll~a~l~~~ad------~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 179 LLR-GDLEDAETLLLPAYLSPAAD------SRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHc-CCHHHHHHHHHHHHhCCCCc------hHHHHHHHHHHhhcCChHHHHh
Confidence 544 55555555554444432221 2344445555555555555543
No 154
>KOG0543|consensus
Probab=97.80 E-value=0.001 Score=61.13 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh--HH-------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF--TM-------AAKHHQTIAEIYETDCVDQEKAVEHYEQAAT 142 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~--~~-------aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~ 142 (320)
.|.-...-|+.|.+. ++..|+.-|++|+......... .. --.++.|++.+|.+. ++|.+|+.+-.+++.
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl-~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL-KEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh-hhHHHHHHHHHHHHh
Confidence 344444556776666 8999999999999887632211 11 123589999999996 999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 143 YFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 143 ~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
+-+.+ ...+.+-|.++..+|+|+.|+..|+++....|++..
T Consensus 286 ~~~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 286 LDPNN------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred cCCCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 87764 678999999999999999999999999998887754
No 155
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.78 E-value=9.9e-05 Score=51.66 Aligned_cols=63 Identities=25% Similarity=0.222 Sum_probs=55.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
..+|... +++++|++++++++.+.|.. ...+...|.++..+|++++|++.++++....|+.+.
T Consensus 2 ~~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQ-EDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 5677887 99999999999999998884 568889999999999999999999999988776553
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.76 E-value=0.0005 Score=64.32 Aligned_cols=117 Identities=14% Similarity=0.124 Sum_probs=94.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIA 120 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la 120 (320)
..++..++++.|++.+++..+-. ++ +...++.++... +..+|++.+.+++...|.. +..+..-+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~-----pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa 241 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERD-----PE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQA 241 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcC-----Cc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 45566788899998888866542 32 334467777777 7889999999999665544 55788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
..+... ++++.|+++.++|+.+.|.. ..+|..|+.+|..+|++++|+-..+..
T Consensus 242 ~fLl~k-~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 242 EFLLSK-KKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHhc-CCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 888887 99999999999999999885 679999999999999999999877744
No 157
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=8.2e-05 Score=51.28 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
|++++|+..|++++...|.. ..+...+|.++...|++++|.++++++....++++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred cCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 89999999999999999885 57888999999999999999999999998777643
No 158
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.73 E-value=0.0034 Score=54.54 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhh
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLK 191 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~ 191 (320)
-+..|.+-|..-... |++++|+..|+.....++-..- .-++...++..+.+.++|++|+...++..+..|+++-.-
T Consensus 33 p~~~LY~~g~~~L~~-gn~~~A~~~fe~l~~~~p~s~~---~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQK-GNYEEAIKYFEALDSRHPFSPY---SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 344566666665665 9999999999998877766432 367889999999999999999999999999888776432
Q ss_pred cchhHhHHHHHHHHHh------hhhHHHHHHHHHHHHhCCCccCcH
Q psy9376 192 YSAKEYFFRAALCHLC------IDVINAHNAIDRYKTIYPAFQDSR 231 (320)
Q Consensus 192 ~~~~~~~~~a~~~~l~------~d~~~~~~A~~~y~~~~~~f~~s~ 231 (320)
| .++..++++.. +|+..+..|+..+++....||.|+
T Consensus 109 Y----~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 109 Y----AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred H----HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 2 23445666553 388999999999999999999975
No 159
>KOG4162|consensus
Probab=97.73 E-value=0.0042 Score=61.22 Aligned_cols=203 Identities=12% Similarity=0.092 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHH
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMA 112 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~a 112 (320)
...|+...-.....|++..+.++|+++.... ....+.|...+.+|... ....|+...++.....++-.++
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~--- 393 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFS------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI--- 393 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc---
Confidence 3344444455566899999999999998763 45677788888888877 6778999998888776433332
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL-----------QNYNKAIQIYEEVG 181 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~-----------g~y~~Ai~~y~~~~ 181 (320)
...+.-...++++ ++.+++++++-.++++.+.. ........++.-+|-.|... -...++++.++++.
T Consensus 394 s~~Lmasklc~e~-l~~~eegldYA~kai~~~~~-~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 394 SVLLMASKLCIER-LKLVEEGLDYAQKAISLLGG-QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred hHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHhhh-hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 2233333445555 59999999999999997733 33445667788888887533 12568899999999
Q ss_pred HhhhhhhhhhcchhHhHHHHHHHHHh---hhhHHHHHHHHHHHHhCCCc-cCcHHHHHHHHHHHHHHhcCHhHHHHHHHH
Q psy9376 182 RTSLDSSLLKYSAKEYFFRAALCHLC---IDVINAHNAIDRYKTIYPAF-QDSREYKLLRILIEHIEEQNVDGFTEAVKD 257 (320)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~a~~~~l~---~d~~~~~~A~~~y~~~~~~f-~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ 257 (320)
..++.++.. ++++. ..+.+...|++..+....-- ..+..++.+-.++-. -.+++.+|+.+
T Consensus 472 ~~d~~dp~~------------if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS----a~kr~~~Al~v 535 (799)
T KOG4162|consen 472 QFDPTDPLV------------IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS----AQKRLKEALDV 535 (799)
T ss_pred hcCCCCchH------------HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh----hhhhhHHHHHH
Confidence 988877753 23332 23455666666665544432 234455544443322 36899999999
Q ss_pred Hhhhcc
Q psy9376 258 YDSISR 263 (320)
Q Consensus 258 ye~~~~ 263 (320)
-+.+..
T Consensus 536 vd~al~ 541 (799)
T KOG4162|consen 536 VDAALE 541 (799)
T ss_pred HHHHHH
Confidence 887764
No 160
>KOG3617|consensus
Probab=97.71 E-value=0.0073 Score=60.11 Aligned_cols=220 Identities=20% Similarity=0.195 Sum_probs=127.2
Q ss_pred HHhhhhhhcccc-CCCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q psy9376 14 AALLRVVFITKV-GGNKIDEAIECYTRAANMFKM------AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86 (320)
Q Consensus 14 ~k~~~~~~~~~~-~~~~~~~A~~~y~~ag~~~~~------~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~ 86 (320)
++.|-+|+.... ++|+.|.|+..|..|-.-|.. +|+.++|.. |.+..|+. |.+|.. |..|..
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~-------iA~esgd~---AAcYhl-aR~YEn 979 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAAR-------IAEESGDK---AACYHL-ARMYEN 979 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHH-------HHHhcccH---HHHHHH-HHHhhh
Confidence 445566766654 579999999999988665543 577776655 44444442 334443 466666
Q ss_pred C-CHHHHHHHHHHH------HHHHHHcCChHHHHHH--------HHHHHHHHHhccC-CHHHHHHHHHHHH---------
Q psy9376 87 T-DNEAAIDCLSKA------IVIYTDMGRFTMAAKH--------HQTIAEIYETDCV-DQEKAVEHYEQAA--------- 141 (320)
Q Consensus 87 ~-~~~eA~~~~~kA------~~l~~~~~~~~~aa~~--------~~~la~~y~~~l~-~~~~Ai~~y~kA~--------- 141 (320)
. +..+|+..|.+| +.+..+++-.++.++. +...|..|+.. | ..++|+.+|.+|-
T Consensus 980 ~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~-g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL-GGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc-chhhhHHHHHHHhhcchHHHHHHH
Confidence 5 777888776654 4555666654444433 45566677775 5 7788888877663
Q ss_pred ---------hHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHH
Q psy9376 142 ---------TYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVIN 212 (320)
Q Consensus 142 ---------~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~ 212 (320)
++..++=+...-...+.+.++.+....+|++|+.++-.+-.... ..++|.- .-..
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~--------------AlqlC~~--~nv~ 1122 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG--------------ALQLCKN--RNVR 1122 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHhc--CCCc
Confidence 22222222223356677888888888999999876654432110 0122210 0011
Q ss_pred HHHHHHHHH--HhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 213 AHNAIDRYK--TIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 213 ~~~A~~~y~--~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
..+-+.+.. .-++.++....-.+|..+.+-+. .+|.|.-|-+.|-++..
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~--qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL--QQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH--hccchHHHHHHHhhhhh
Confidence 111112111 11233444444456677666443 57899999999988875
No 161
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.66 E-value=0.0013 Score=56.56 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc-------CCchHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDM-GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE-------ESNSSANKCLLK 159 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~-~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~-------~~~~~a~~~~~~ 159 (320)
.+++|++.|.-|+-...-. +.+...|..+.++|-+|+.. |+.++...++++|++.|... .........+..
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~-~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDL-GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 5788999998888887644 46778899999999999997 99777777777777666442 123345678889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 160 VAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 160 la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+|++..++|++++|+..|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 999999999999999999999865
No 162
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.60 E-value=0.00032 Score=65.71 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
-+..+.++|.+|... |+|++|+.+|++|+++.+... .+..++.++|.+|..+|++++|+++++++...
T Consensus 74 ~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL~Pd~a---eA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSK-GRVKDALAQFETALELNPNPD---EAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356799999999997 999999999999999988742 12356999999999999999999999999874
No 163
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.56 E-value=0.0049 Score=59.87 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=107.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+.-.+..|...|++++|+++..+|++.. +...+.|..-|.+++.. ++.+|.++++.|..+...... .
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy------i 264 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY------I 264 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH------H
Confidence 3445788889999999999999999873 23577888889999998 999999999999998876654 4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC-C------chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE-S------NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~-~------~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
-.+.+..+-+. |+.++|.... .+|...+ + ..+..-.....|..|.+.|++..|++.|..+.....+-.
T Consensus 265 NsK~aKy~LRa-~~~e~A~~~~----~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 265 NSKCAKYLLRA-GRIEEAEKTA----SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred HHHHHHHHHHC-CCHHHHHHHH----HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 45566666676 9999997754 5554443 1 112233457789999999999999999998887644333
Q ss_pred hhhcchhHhHHH
Q psy9376 189 LLKYSAKEYFFR 200 (320)
Q Consensus 189 ~~~~~~~~~~~~ 200 (320)
.-+|.--+|.++
T Consensus 340 ~DQfDFH~Yc~R 351 (517)
T PF12569_consen 340 EDQFDFHSYCLR 351 (517)
T ss_pred cccccHHHHHHh
Confidence 333333333333
No 164
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.51 E-value=0.0015 Score=61.30 Aligned_cols=117 Identities=16% Similarity=0.075 Sum_probs=89.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy9376 46 MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYE 124 (320)
Q Consensus 46 ~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~ 124 (320)
..|+++.|...+...+.-.+ +......-++.++.+. +..+|.+.+++++.+.|...- ...++|.+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P------~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~------l~~~~a~all 385 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP------DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL------LQLNLAQALL 385 (484)
T ss_pred HhcccchHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH------HHHHHHHHHH
Confidence 35777888877777443321 2344566677888887 889999999999999887754 7889999999
Q ss_pred hccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 125 TDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 125 ~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
+. |++.+||..+.+.+.-.+++ ...|..+++.|..+|+-.+|...+-+..
T Consensus 386 ~~-g~~~eai~~L~~~~~~~p~d------p~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 386 KG-GKPQEAIRILNRYLFNDPED------PNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred hc-CChHHHHHHHHHHhhcCCCC------chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 97 99999999998887776665 4578888888888888888887776654
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.41 E-value=0.0036 Score=49.75 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH
Q psy9376 74 ACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA 153 (320)
Q Consensus 74 a~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a 153 (320)
...|..+-..+...++++|++.++....-+|-... +.++...+|.+|-.. +++++|+..+++=++++|...+ +
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y---a~qAqL~l~yayy~~-~~y~~A~a~~~rFirLhP~hp~---v 83 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY---AEQAQLDLAYAYYKQ-GDYEEAIAAYDRFIRLHPTHPN---V 83 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCC---c
Confidence 44555555556666899999988888777765433 335688899999988 9999999999999999888654 4
Q ss_pred HHHHHHHHHHHHHccC---------------HHHHHHHHHHHHHhhhhhhh
Q psy9376 154 NKCLLKVAHHAALLQN---------------YNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~---------------y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.-++...|-++..+.. ..+|...|++.++..|+++.
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 5577777777766655 67788888888887777553
No 166
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.38 E-value=0.00046 Score=64.62 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
+..+.++|.+|... ++++|+.+|++|+++.|+... +..+|+++|.+|..+ |++++|++++++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae---A~~A~yNLAcaya~L-Gr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE---AQAAYYNKACCHAYR-EEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 34444555555444 555555555555555443211 112355555555554 5555555555555554
No 167
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.38 E-value=0.0051 Score=45.52 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=67.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHH
Q psy9376 81 ANCFKKTDNEAAIDCLSKAIVIYTDMGRFT---MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCL 157 (320)
Q Consensus 81 a~~y~~~~~~eA~~~~~kA~~l~~~~~~~~---~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~ 157 (320)
.+..+..++.+|++.+.+..+.....+... ....++.++|.+.... |++++|+..+++|+.+.++.++......++
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~-G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF-GHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 345555689999999999999988777655 5666789999999997 999999999999999999999877776666
Q ss_pred HHHHHHH
Q psy9376 158 LKVAHHA 164 (320)
Q Consensus 158 ~~la~~~ 164 (320)
..+..+.
T Consensus 85 ~~~~~l~ 91 (94)
T PF12862_consen 85 SWLANLL 91 (94)
T ss_pred HHHHHHh
Confidence 6665543
No 168
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.34 E-value=0.00045 Score=41.38 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
++.+||.+|... |++++|+++|++++.+.++.+
T Consensus 1 al~~Lg~~~~~~-g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQ-GDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHC-T-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccc
Confidence 478999999997 999999999999998766543
No 169
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.34 E-value=0.21 Score=49.97 Aligned_cols=166 Identities=15% Similarity=0.015 Sum_probs=122.0
Q ss_pred HHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHH
Q psy9376 13 AAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAA 92 (320)
Q Consensus 13 ~~k~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA 92 (320)
|=|||...+..+ .-+...+|.-.++-+...+....+++.|-.+.+|+..+..+.+-.+.--.+-..++.++.+.++..|
T Consensus 40 ai~CL~~~~~~~-~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQF-KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAA 118 (608)
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHH
Confidence 567777777543 2345688999999988889999999999999999999987744443334455566888988877779
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH--HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 93 IDCLSKAIVIYTDMGRFTMAAKHHQTIA--EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~~~~aa~~~~~la--~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
....+++++.+...+... -...+++- ..+... +++..|++.++....+....+++....-+...-+.+....+..
T Consensus 119 ~~~l~~~I~~~~~~~~~~--w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSA--WYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred HHHHHHHHHHHhccCchh--HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999988744321 11122222 222232 6899999999999998877777766656666666777788889
Q ss_pred HHHHHHHHHHHH
Q psy9376 171 NKAIQIYEEVGR 182 (320)
Q Consensus 171 ~~Ai~~y~~~~~ 182 (320)
+++++..+++..
T Consensus 196 ~d~~~~l~~~~~ 207 (608)
T PF10345_consen 196 DDVLELLQRAIA 207 (608)
T ss_pred hhHHHHHHHHHH
Confidence 999999988854
No 170
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.33 E-value=0.00051 Score=40.32 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
|.+|.++|.+|... |++++|+.+|++|+++.|+
T Consensus 1 a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQL-GDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHh-CCchHHHHHHHHHHHHCcC
Confidence 46899999999997 9999999999999998765
No 171
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.003 Score=55.36 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=88.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAK 195 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~ 195 (320)
.++.|.-+-.. |+|..|...|..=+.-||...- ..+++..||+++...|+|++|...|..+.+..++.+- +.
T Consensus 144 ~Y~~A~~~~ks-gdy~~A~~~F~~fi~~YP~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K----Ap 215 (262)
T COG1729 144 LYNAALDLYKS-GDYAEAEQAFQAFIKKYPNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK----AP 215 (262)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC----Ch
Confidence 55666555555 8999999999999999988543 5678899999999999999999999999988776553 34
Q ss_pred HhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH
Q psy9376 196 EYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL 236 (320)
Q Consensus 196 ~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l 236 (320)
+.++..+.|.. +.++.++|...+++....||.+.-.+..
T Consensus 216 dallKlg~~~~--~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 216 DALLKLGVSLG--RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHH--HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 66666666643 5677888999999999999998776643
No 172
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.29 E-value=0.039 Score=45.92 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hh
Q psy9376 132 KAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DV 210 (320)
Q Consensus 132 ~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~ 210 (320)
+-++-++.-+.-++++.-..+....+..+|+.|.+.|++++|++.|.++...+.+.... ...+++....-+.. +.
T Consensus 14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~----id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK----IDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH----HHHHHHHHHHHHHhCCH
Confidence 33444555555556665666778899999999999999999999999987665443321 13333333333332 55
Q ss_pred HHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCC-chhh
Q psy9376 211 INAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLD-SSLL 289 (320)
Q Consensus 211 ~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~-~~l~ 289 (320)
.....-+++.....+. ++..+.+.--.++.++..--.++|.+|.+.|=.+.. .... +---
T Consensus 90 ~~v~~~i~ka~~~~~~-~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~------------------t~~~~~~~e 150 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEK-GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS------------------TFTSLQYTE 150 (177)
T ss_pred HHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc------------------CCCCCchhh
Confidence 5555556665555443 222222211222222322246899999999888754 3322 2234
Q ss_pred hchhHHHhHHHHHHHHhH
Q psy9376 290 KYSAKEYFFRAALCHLCI 307 (320)
Q Consensus 290 ~~~~~~y~~~a~~c~~~~ 307 (320)
-.|..|+=+-.++|.|++
T Consensus 151 l~s~~d~a~Y~~l~aLat 168 (177)
T PF10602_consen 151 LISYNDFAIYGGLCALAT 168 (177)
T ss_pred hcCHHHHHHHHHHHHHHh
Confidence 456789999999999987
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.26 E-value=0.00091 Score=46.65 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=48.2
Q ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 82 NCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 82 ~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
.+|... ++++|++++++++.+.|..-. .+...|.++... |++++|+..++++++..|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPE------LWLQRARCLFQL-GRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccch------hhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCc
Confidence 445555 888999999999998887655 788899999987 99999999999999887753
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.00056 Score=47.01 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 87 TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 87 ~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
.++++|++.|++++...|++.. ++..+|.+|... |++++|...+++++...++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPE------ARLLLAQCYLKQ-GQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHH------HHHHHHHHHHHT-T-HHHHHHHHHCCHGGGTTH
T ss_pred cCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCH
Confidence 3789999999999999887665 788999999997 99999999999999887763
No 175
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.24 E-value=0.00077 Score=39.39 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
|.++..+|.+|... |++++|+++|++++.+.|+
T Consensus 1 a~~~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQL-GNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHCcC
Confidence 46799999999997 9999999999999999875
No 176
>KOG4642|consensus
Probab=97.20 E-value=0.00079 Score=57.64 Aligned_cols=109 Identities=15% Similarity=0.212 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
+|-.+...+-...-|+.+...+.|+.|+++|.+|+.+. | ..+..|.+-+.||.+. +++.+..-.++|+++.++
T Consensus 3 ~~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n-----P-~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 3 SPEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICIN-----P-TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred CcccchHHHHHHhccccccchhhhchHHHHHHHHHhcC-----C-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 45566667777777999998999999999999999884 3 3566888889999998 899999999999999876
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 106 ~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
.- ..++-+|...... ..+++||.++++|.++.+...
T Consensus 77 ~v------k~h~flg~~~l~s-~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 77 LV------KAHYFLGQWLLQS-KGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HH------HHHHHHHHHHHhh-ccccHHHHHHHHHHHHHhcCC
Confidence 53 3688888888887 899999999999999887754
No 177
>KOG2376|consensus
Probab=97.18 E-value=0.034 Score=53.54 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=57.0
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc---------
Q psy9376 78 LDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--------- 147 (320)
Q Consensus 78 ~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--------- 147 (320)
+.+ -|..+. ..++|+.++.-+ .+.. -..+.--|.++-+. |+|++|...|+..+.-..++
T Consensus 84 EKA-Yc~Yrlnk~Dealk~~~~~---~~~~------~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~r~nl 152 (652)
T KOG2376|consen 84 EKA-YCEYRLNKLDEALKTLKGL---DRLD------DKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEERRANL 152 (652)
T ss_pred HHH-HHHHHcccHHHHHHHHhcc---cccc------hHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 444 454444 788899888811 1111 01333444444443 67777777776653211110
Q ss_pred ----------------CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 148 ----------------ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 148 ----------------~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
..+...-+.+.+.+.+++..|+|.+|++.++++.+++
T Consensus 153 ~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 153 LAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred HHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1112234567888999999999999999999996544
No 178
>KOG4234|consensus
Probab=97.18 E-value=0.0061 Score=51.06 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=83.9
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHH
Q psy9376 80 AANCFK-KTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLL 158 (320)
Q Consensus 80 aa~~y~-~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~ 158 (320)
-|+-+. ..++++|..-|..|+++.|.... ....-+|.+-|.++.++ +..+.||+-..+|+++.+.. ..++.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl-~k~e~aI~dcsKaiel~pty------~kAl~ 172 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKL-RKWESAIEDCSKAIELNPTY------EKALE 172 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHh-hhHHHHHHHHHhhHhcCchh------HHHHH
Confidence 344433 44899999999999999987765 44556788888888886 99999999999999998874 46778
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 159 KVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 159 ~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
+-+.+|.+...|++|++-|.++....|...
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 889999999999999999999998766543
No 179
>PRK11906 transcriptional regulator; Provisional
Probab=97.16 E-value=0.0028 Score=59.56 Aligned_cols=119 Identities=13% Similarity=-0.030 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHH---HHHHHcCChHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 49 KWNNAGKAFVEAA---NLHMKSGTKHDAACNLLDAANCFKKT----------DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 49 ~~~~A~~~y~kA~---~~~~~~~~~~~aa~~~~~aa~~y~~~----------~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+...|..+|.+|+ ++. | .-+.+|--++.|+... +..+|+++.++|+++.+.+.. +
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-----p-~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~------a 340 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-----T-LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK------I 340 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-----c-ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH------H
Confidence 4577888888888 552 2 3455555555555432 457889999999998876654 8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+..+|.+.--. ++++.|+..|++|..+.|.. +..+...|.+..-.|+.++|++..+++.+.+|-
T Consensus 341 ~~~~g~~~~~~-~~~~~a~~~f~rA~~L~Pn~------A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 341 LAIMGLITGLS-GQAKVSHILFEQAKIHSTDI------ASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHhh-cchhhHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 89999987776 89999999999999998874 778899999999999999999999999887654
No 180
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.15 E-value=0.038 Score=52.38 Aligned_cols=186 Identities=15% Similarity=0.112 Sum_probs=117.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch------
Q psy9376 78 LDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS------ 151 (320)
Q Consensus 78 ~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~------ 151 (320)
.-+-.+.++.+++.-+++..+|+++.++.-+ +|.-+|+ +.. ....+|.++|+||++.-+..-...
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAd------AYILLAE--EeA-~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCAD------AYILLAE--EEA-STIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhH------HHhhccc--ccc-cCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 3344566666899999999999999987765 7888887 333 457889999998886543321000
Q ss_pred -------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHH
Q psy9376 152 -------------SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAI 217 (320)
Q Consensus 152 -------------~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~ 217 (320)
--..+-..+|.+..++|+.++|++.+++..+..+..... +.-.+..-|.|-. ...+++.-+
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l-----~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNL-----NIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchh-----hHHHHHHHHHHhcCCHHHHHHHH
Confidence 012345678999999999999999999998764432111 1112233444433 567888888
Q ss_pred HHHHHhCCCccCcHHHHHHHHHHHHHHhcC------------HhHHHHHHHHHhhhcchhhhHHHHHHHHHHhh
Q psy9376 218 DRYKTIYPAFQDSREYKLLRILIEHIEEQN------------VDGFTEAVKDYDSISRLDQWYTTVLLRIKKQV 279 (320)
Q Consensus 218 ~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d------------~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~ 279 (320)
.+|.+ ...|.|-.--.-..|+.+-..+| ...-..|++...++.+.||..+.-|+..|..+
T Consensus 319 ~kYdD--i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Li 390 (539)
T PF04184_consen 319 AKYDD--ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLI 390 (539)
T ss_pred HHhcc--ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCC
Confidence 88853 23344322111123332211111 11224467778888889999999999888554
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.08 E-value=0.0078 Score=54.25 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
-+|.++...|++++|+....+. ++ .++..-...+|... +++.|...+++.-++..+ .-....+.+|.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv 174 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQIDED-SILTQLAEAWV 174 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHH
Confidence 3466777778888877766543 11 23333445666666 788888777665332110 00122333333
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHh
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEY 197 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~ 197 (320)
++.. .. +++.+|.-.|++..+.++.. ...+..++.+...+|+|++|.+.++++....++++.+
T Consensus 175 ~l~~---g~-e~~~~A~y~f~El~~~~~~t------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~------- 237 (290)
T PF04733_consen 175 NLAT---GG-EKYQDAFYIFEELSDKFGST------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT------- 237 (290)
T ss_dssp HHHH---TT-TCCCHHHHHHHHHHCCS--S------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH-------
T ss_pred HHHh---Cc-hhHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH-------
Confidence 3332 22 46899999999877765442 4567888999999999999999999987666655432
Q ss_pred HHHHHHHHHhh--hhHHHHHHHHHHHHhCCCc
Q psy9376 198 FFRAALCHLCI--DVINAHNAIDRYKTIYPAF 227 (320)
Q Consensus 198 ~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~f 227 (320)
+.+.+.|.+.. .....++-++...+..|.+
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 33444444433 1133444444444444444
No 182
>KOG4340|consensus
Probab=97.07 E-value=0.009 Score=53.01 Aligned_cols=166 Identities=19% Similarity=0.104 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
++..||++..--.+-.+++ .+ .+.-+|.+|-.. .++..|.+||++...++|+. .+...--++.+.+.
T Consensus 25 ry~DaI~~l~s~~Er~p~~----rA--gLSlLgyCYY~~-Q~f~~AA~CYeQL~ql~P~~------~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRS----RA--GLSLLGYCYYRL-QEFALAAECYEQLGQLHPEL------EQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHHHhcCccc----hH--HHHHHHHHHHHH-HHHHHHHHHHHHHHhhChHH------HHHHHHHHHHHHHh
Confidence 6788888776544433322 22 577889998886 89999999999999999885 44555567888889
Q ss_pred cCHHHHHHHHHHHHHh-hhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhc
Q psy9376 168 QNYNKAIQIYEEVGRT-SLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQ 246 (320)
Q Consensus 168 g~y~~Ai~~y~~~~~~-~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~ 246 (320)
+.+.+|+.+...+++. .+-+..++ +.+++-+--.|....+. +.+..|+..+...+.+.. |-.-
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lq-------LqaAIkYse~Dl~g~rs-------LveQlp~en~Ad~~in~g--Clly 155 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQ-------LQAAIKYSEGDLPGSRS-------LVEQLPSENEADGQINLG--CLLY 155 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHH-------HHHHHhcccccCcchHH-------HHHhccCCCccchhccch--heee
Confidence 9999999888877642 11111110 00010000002222211 112223322323232221 2233
Q ss_pred CHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhchhHHHhHHHHHHHHhH
Q psy9376 247 NVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYFFRAALCHLCI 307 (320)
Q Consensus 247 d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~y~~~a~~c~~~~ 307 (320)
..++++.|++.|+.+.+ -+-=+|++-|++ .|||+-.
T Consensus 156 kegqyEaAvqkFqaAlq------------------vsGyqpllAYni-------ALaHy~~ 191 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQ------------------VSGYQPLLAYNL-------ALAHYSS 191 (459)
T ss_pred ccccHHHHHHHHHHHHh------------------hcCCCchhHHHH-------HHHHHhh
Confidence 57899999999999886 455578888876 4777766
No 183
>KOG2300|consensus
Probab=97.05 E-value=0.25 Score=46.84 Aligned_cols=206 Identities=19% Similarity=0.146 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 73 AACNLLDAANCFKKTDN---EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 73 aa~~~~~aa~~y~~~~~---~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
.+.++.-++.-++..+| ..+|.|.+- +++-.-.+.-.|++...+|.++..-..+.+.|...+++|..+.+..++
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA---~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~ 82 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQA---IFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPS 82 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHH---HhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccccc
Confidence 34556666677777744 456666554 344444555778889999986444338899999999999999988877
Q ss_pred c-hHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCc
Q psy9376 150 N-SSANKCLLKVAHHAALLQ-NYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAF 227 (320)
Q Consensus 150 ~-~~a~~~~~~la~~~~~~g-~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f 227 (320)
. ...-++...++++|.... ..+.|-...+++.....+.+. |+.+-.|--+.++.+-.|.. .|++-.. -++
T Consensus 83 fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~--wsckllfQLaql~~idkD~~---sA~elLa---vga 154 (629)
T KOG2300|consen 83 FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY--WSCKLLFQLAQLHIIDKDFP---SALELLA---VGA 154 (629)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHhhhccch---hHHHHHh---ccc
Confidence 6 456778888999998877 778888889999887666553 44333222222222212333 3333321 111
Q ss_pred cC-----cHHH---HHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhchhHHHhHH
Q psy9376 228 QD-----SREY---KLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYFFR 299 (320)
Q Consensus 228 ~~-----s~e~---~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~y~~~ 299 (320)
.. +.+. .++..+.--+.+.|..+...++ ..+++.++ +-..||--+-.+|.||.-
T Consensus 155 ~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll-----------------~~~~qi~~-n~~sdk~~~E~LkvFyl~ 216 (629)
T KOG2300|consen 155 ESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLL-----------------QRCGQIWQ-NISSDKTQKEMLKVFYLV 216 (629)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHH-----------------HHHHHHHh-ccCCChHHHHHHHHHHHH
Confidence 11 1122 2222221113333444444444 44444444 444577779999999999
Q ss_pred HHHHHHhH
Q psy9376 300 AALCHLCI 307 (320)
Q Consensus 300 a~~c~~~~ 307 (320)
.-+||.--
T Consensus 217 lql~yy~~ 224 (629)
T KOG2300|consen 217 LQLSYYLL 224 (629)
T ss_pred HHHHHHhc
Confidence 99998865
No 184
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.05 E-value=0.014 Score=51.33 Aligned_cols=91 Identities=24% Similarity=0.222 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHcc
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQ 168 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g 168 (320)
....++++.+|.+.+...+...........+|.-|... |++++|+.+|+.+...|+.+|.+.-...++..+..++..+|
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~-g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRL-GDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH
Q psy9376 169 NYNKAIQIYEEV 180 (320)
Q Consensus 169 ~y~~Ai~~y~~~ 180 (320)
+.+..+.+--+.
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 999888765443
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0046 Score=54.85 Aligned_cols=108 Identities=14% Similarity=-0.015 Sum_probs=86.8
Q ss_pred HcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHh
Q psy9376 66 KSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD--CVDQEKAVEHYEQAAT 142 (320)
Q Consensus 66 ~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~--l~~~~~Ai~~y~kA~~ 142 (320)
++...++.++-|.-+|.+|... +.+.|...|.+|+.+.+++.+ .+..+|.++..+ -..-.++...+.+++.
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~------~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE------ILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3333445677899999999998 999999999999999988866 667777654433 1334788999999999
Q ss_pred HhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 143 YFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 143 ~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
.-+.+ ..++.-+|..+...|+|.+|+..++...+..+
T Consensus 222 ~D~~~------iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 222 LDPAN------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred cCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 87764 56888899999999999999999999987643
No 186
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.02 E-value=0.012 Score=55.30 Aligned_cols=106 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc
Q psy9376 71 HDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN 150 (320)
Q Consensus 71 ~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~ 150 (320)
...+.-|-.+-..|...++++|...+...+.-.|+|-+ .+.-.+.++... ++.++|++.+++++.+.|..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~------~~~~~~~i~~~~-nk~~~A~e~~~kal~l~P~~--- 373 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY------YLELAGDILLEA-NKAKEAIERLKKALALDPNS--- 373 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCc---
Confidence 34444565655555556889999999998888886655 577788999997 99999999999999999885
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 151 ~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.-...++|..|.+.|++.+|+..+++.....++++.
T Consensus 374 ---~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 374 ---PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred ---cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 346688999999999999999999999887777664
No 187
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.01 E-value=0.05 Score=44.73 Aligned_cols=135 Identities=20% Similarity=0.219 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+...+..+...+++..++..+.++....... .....+...+ ++... ++++|+.++.+++...+. ....+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 169 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALG-ALYELGDYEEALELYEKALELDPE---LNELAEA 169 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHH
Confidence 3344566666666667776666666543211 1111111111 34443 666677777766543221 1111223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
+...+..+... +++++|+..+.+++...+.. ....+..++..+...+++++|+..+.++....+
T Consensus 170 ~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 170 LLALGALLEAL-GRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHhhhHHHHh-cCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 44444445554 66777777777766665552 234566666666666667777766666665544
No 188
>KOG3785|consensus
Probab=96.98 E-value=0.2 Score=45.79 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHH
Q psy9376 27 GNKIDEAIECYTRA---------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~ 90 (320)
+.||+.|+.+++.. |-++..+|||++|+.-|.-+..- .++ .++...+++-|+.-. .+.
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~--~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDA--PAELGVNLACCKFYLGQYI 108 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCC--CcccchhHHHHHHHHHHHH
Confidence 56888888888654 56778889999999888776541 111 234445555554433 455
Q ss_pred HHHHHHHHHHH----------HHHHcCChHHHHHHHHHHHHH-----------HHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 91 AAIDCLSKAIV----------IYTDMGRFTMAAKHHQTIAEI-----------YETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 91 eA~~~~~kA~~----------l~~~~~~~~~aa~~~~~la~~-----------y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
+|.....+|.+ +..+.++-.+.-..+.+++.. |.+ -.|.+||+.|.+.+.-.++-
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR--~HYQeAIdvYkrvL~dn~ey-- 184 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMR--MHYQEAIDVYKRVLQDNPEY-- 184 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHH--HHHHHHHHHHHHHHhcChhh--
Confidence 55544443322 222334433333333333333 333 46788888887776543331
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy9376 150 NSSANKCLLKVAHHAALLQNYNKAIQIYEE 179 (320)
Q Consensus 150 ~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~ 179 (320)
.+ .-..++-+|.++.=|+-+-++..-
T Consensus 185 --~a--lNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 185 --IA--LNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred --hh--hHHHHHHHHHhcchhhhHHHHHHH
Confidence 22 334466777777766655444443
No 189
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.95 E-value=0.02 Score=42.27 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKH---DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEI 122 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~---~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~ 122 (320)
.|||..|.+.+.+..+.....+... ....+..+++.+.... ++++|+..+++|+.+.++.++....+.++..+..+
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l 90 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANL 90 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 5788888888888887776555433 4455677777777776 99999999999999999999988888888877776
Q ss_pred HH
Q psy9376 123 YE 124 (320)
Q Consensus 123 y~ 124 (320)
.+
T Consensus 91 ~~ 92 (94)
T PF12862_consen 91 LK 92 (94)
T ss_pred hh
Confidence 44
No 190
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.94 E-value=0.18 Score=41.97 Aligned_cols=128 Identities=13% Similarity=0.013 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHH
Q psy9376 54 GKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEK 132 (320)
Q Consensus 54 ~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~ 132 (320)
++-++.-++-+++.....+.-.++..+|.-|.+. +.++|+++|.++.+.. ..+.....++.++-.+.... +++..
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~-~d~~~ 91 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFF-GDWSH 91 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHh-CCHHH
Confidence 3444444444555555566778888999988887 9999999999976643 34445555666666666665 89999
Q ss_pred HHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 133 AVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 133 Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
...+..+|-.+....++|......-.--|-.+...++|.+|.+.|-.+.....
T Consensus 92 v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 92 VEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 99999999999888887776665555556666778999999999998875543
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.93 E-value=0.0085 Score=56.15 Aligned_cols=99 Identities=21% Similarity=0.147 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHH
Q psy9376 27 GNKIDEAIECYTRA-----------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAID 94 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~ 94 (320)
+++++.|++.+++. +.++...++-.+|+....+++... +. .+..+..-+..+... +++.|+.
T Consensus 182 t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-----p~-d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-----PQ-DSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 57899999999875 567777888999999999998542 22 245555555666665 8999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q psy9376 95 CLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYE 138 (320)
Q Consensus 95 ~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~ 138 (320)
+.++|+.+.|..-. +|..|+.+|... |++++|+-...
T Consensus 256 iAk~av~lsP~~f~------~W~~La~~Yi~~-~d~e~ALlaLN 292 (395)
T PF09295_consen 256 IAKKAVELSPSEFE------TWYQLAECYIQL-GDFENALLALN 292 (395)
T ss_pred HHHHHHHhCchhHH------HHHHHHHHHHhc-CCHHHHHHHHh
Confidence 99999999998766 899999999997 99999997654
No 192
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.90 E-value=0.0028 Score=37.08 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+.++.++|.++..+|++++|+.+|+++....|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999987654
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.86 E-value=0.088 Score=43.80 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=70.8
Q ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHh-HhhccCCchHHHHHHHH
Q psy9376 82 NCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAAT-YFKGEESNSSANKCLLK 159 (320)
Q Consensus 82 ~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~-~~~~~~~~~~a~~~~~~ 159 (320)
....+. ||+..++-..+.+++.|..-+ ...+|+...+. |++.+|...|++++. +|..+ ...+..
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvqn-------r~rLa~al~el-Gr~~EA~~hy~qalsG~fA~d------~a~lLg 129 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQN-------RYRLANALAEL-GRYHEAVPHYQQALSGIFAHD------AAMLLG 129 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHHH-------HHHHHHHHHHh-hhhhhhHHHHHHHhccccCCC------HHHHHH
Confidence 333444 888888777777777776554 67888888885 999999999999985 55553 568889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 160 VAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 160 la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
++......+++-.|...+++..+..
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcC
Confidence 9999999999999999999998653
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.01 Score=52.72 Aligned_cols=102 Identities=15% Similarity=0.048 Sum_probs=80.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--C--CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK--T--DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~--~--~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
.|.+|...|+++.|...|.+|..+.. +. .+.+.-.|.++.- . ...++...+++|+...+.+-. +
T Consensus 162 Lg~~ym~~~~~~~A~~AY~~A~rL~g---~n---~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir------a 229 (287)
T COG4235 162 LGRAYMALGRASDALLAYRNALRLAG---DN---PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR------A 229 (287)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHhCC---CC---HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH------H
Confidence 38899999999999999999999953 22 2333344444333 2 678999999999999887655 7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHH
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSAN 154 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~ 154 (320)
+.-+|..+..+ |+|.+|+..++..++..+....+....
T Consensus 230 l~lLA~~afe~-g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQ-GDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 88899999998 999999999999999998876655543
No 195
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.86 E-value=0.19 Score=41.07 Aligned_cols=202 Identities=19% Similarity=0.175 Sum_probs=122.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 38 TRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 38 ~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
...+..+...+++..+...+...... .........+...+..+... ++.+++..+.++....+.... ..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 132 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL------AE 132 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch------HH
Confidence 33456666778888888888887764 11234556666777776666 778888888888876655422 23
Q ss_pred HHHHH-HHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh-hhhhcch
Q psy9376 117 QTIAE-IYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS-SLLKYSA 194 (320)
Q Consensus 117 ~~la~-~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~-~~~~~~~ 194 (320)
...+. ++... |++++|+..|++++...+. .......+...+..+...+++++|+..+.++....+.. ..
T Consensus 133 ~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 203 (291)
T COG0457 133 ALLALGALYEL-GDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE----- 203 (291)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH-----
Confidence 33333 67776 9999999999999663321 11234556666666888899999999999988764441 11
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH-HHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREY-KLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~-~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
.+...+.+. ...+...+++..+.......+..... ......+ . ..+.+++++..++++.+.+|-
T Consensus 204 --~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 204 --ALLNLGLLY--LKLGKYEEALEYYEKALELDPDNAEALYNLALLL----L-ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --HHHHhhHHH--HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH----H-HcCCHHHHHHHHHHHHHhCcc
Confidence 011111111 12334556666666555554442111 2122222 1 245788888888888775553
No 196
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.84 E-value=0.0031 Score=36.69 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+++..+|.++..+|++++|+++|+++....|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999987664
No 197
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.84 E-value=0.0027 Score=37.90 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
++.+||.+|...|+|++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999997643
No 198
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.84 E-value=0.16 Score=44.26 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--
Q psy9376 27 GNKIDEAIECYTRA-----------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-- 87 (320)
+|++++|++.|+.. +-.+...++++.|+....+=+.+++... ++.-++...|.++...
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~---n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP---NADYAYYLKGLSYFFQID 123 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHhccCC
Confidence 57788888877765 3344556788888887777777765433 3556666667776554
Q ss_pred ----C---HHHHHHHHHHHHHHHHHcCChHH-----------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 88 ----D---NEAAIDCLSKAIVIYTDMGRFTM-----------AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 88 ----~---~~eA~~~~~kA~~l~~~~~~~~~-----------aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
| ..+|+.-++..+.-+|...-... .|..=..+|..|.+. |.+..|+.-+++.++-++....
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr-~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR-GAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHhccccccc
Confidence 2 34566667777776665543222 233456778889998 9999999999999998877543
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 150 NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 150 ~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
..+.+..+...|..+|-.++|-+.=.=++...++
T Consensus 203 ---~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 203 ---VREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred ---hHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 4567888888999999888887665544444444
No 199
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.82 E-value=0.0034 Score=36.64 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
+++|..+|.+|... |++++|+++|++++++.+
T Consensus 1 a~~~~~lg~~y~~~-~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQL-GDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC
Confidence 46899999999997 999999999999999876
No 200
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.82 E-value=0.006 Score=54.98 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
...-.|.++... |++++|+..+.+. + ..++..-...++...++++.|.+.++.+.+...+..+++
T Consensus 104 ~~~~~A~i~~~~-~~~~~AL~~l~~~-------~----~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~q--- 168 (290)
T PF04733_consen 104 VQLLAATILFHE-GDYEEALKLLHKG-------G----SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQ--- 168 (290)
T ss_dssp HHHHHHHHHCCC-CHHHHHHCCCTTT-------T----CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHH---
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHcc-------C----cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHH---
Confidence 456666778776 9999888877543 1 245666678899999999999999999876655544332
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
+..+.+.++.+....++|+-.|+++.+.|+.+..- +..+. +..-..++|++|.+..+++...||..+.+|.+
T Consensus 169 ----La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~--lng~A--~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 169 ----LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL--LNGLA--VCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp ----HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH--HHHHH--HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred ----HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH--HHHHH--HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 11122333444566788999999998888776532 22211 22224799999999999999999999998865
Q ss_pred H
Q psy9376 275 I 275 (320)
Q Consensus 275 i 275 (320)
.
T Consensus 241 l 241 (290)
T PF04733_consen 241 L 241 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 201
>KOG0495|consensus
Probab=96.81 E-value=0.19 Score=49.36 Aligned_cols=187 Identities=15% Similarity=0.075 Sum_probs=88.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
..+...+-++-|...|-.++..++.-.. .|..++ .+.+. ..++-...+++|+...|+... .|.-.
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~s------lWlra~-~~ek~hgt~Esl~Allqkav~~~pkae~------lwlM~ 590 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKS------LWLRAA-MFEKSHGTRESLEALLQKAVEQCPKAEI------LWLMY 590 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhH------HHHHHH-HHHHhcCcHHHHHHHHHHHHHhCCcchh------HHHHH
Confidence 3444455566666666666666543222 222221 22222 344444556666665554433 34444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
+.-+-.. |+...|...+.+|.+..+.. .+.+.-...+.....++++|..++.++-...+...+ |.
T Consensus 591 ake~w~a-gdv~~ar~il~~af~~~pns------eeiwlaavKle~en~e~eraR~llakar~~sgTeRv--------~m 655 (913)
T KOG0495|consen 591 AKEKWKA-GDVPAARVILDQAFEANPNS------EEIWLAAVKLEFENDELERARDLLAKARSISGTERV--------WM 655 (913)
T ss_pred HHHHHhc-CCcHHHHHHHHHHHHhCCCc------HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchh--------hH
Confidence 4444444 66666666666666655442 234444444555556666666666665443333222 11
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 200 RAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 200 ~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
..+...- -++..++|+.-.++....||.-....++ +++.. +.++.+.|-..|.+-.+
T Consensus 656 Ks~~~er--~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-----~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 656 KSANLER--YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-----QMENIEMAREAYLQGTK 713 (913)
T ss_pred HHhHHHH--HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-----HHHHHHHHHHHHHhccc
Confidence 1111111 1233344444444444444444333333 44332 34566666666665555
No 202
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.78 E-value=0.055 Score=46.46 Aligned_cols=99 Identities=16% Similarity=0.060 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH-------cCChHHHHHHHHH
Q psy9376 48 KKWNNAGKAFVEAANLHMKSG-TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD-------MGRFTMAAKHHQT 118 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~-~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~-------~~~~~~aa~~~~~ 118 (320)
..+++|++.|.-|+-++.-.+ ++...|..+..+|=+|+.. +.+....++++|++.+.+ -........+..-
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 455666666666666665433 3335566666677777766 545555555555555432 2234455678999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+|.+..+. |++++|+.+|.+.+......
T Consensus 171 igeL~rrl-g~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 171 IGELNRRL-GNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHh-CCHHHHHHHHHHHHcCCCCC
Confidence 99999996 99999999999998865443
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.71 E-value=0.0042 Score=38.86 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHH
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAH 162 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~ 162 (320)
.++..+|.+|... |++++|+.+|+++++..|++ ..++..+|.
T Consensus 2 ~~~~~la~~~~~~-G~~~~A~~~~~~~l~~~P~~------~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRL-GQPDEAERLLRRALALDPDD------PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC------HHHHHHhhh
Confidence 3688999999997 99999999999999999885 345555553
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.71 E-value=0.00067 Score=40.08 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHH
Q psy9376 95 CLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVE 135 (320)
Q Consensus 95 ~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~ 135 (320)
+|++|+++.|++.. +|.++|.+|... |++++|++
T Consensus 1 ~y~kAie~~P~n~~------a~~nla~~~~~~-g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE------AYNNLANLYLNQ-GDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH------HHHHHHHHHHHC-cCHHhhcC
Confidence 58899999998876 899999999997 99999863
No 205
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.67 E-value=0.002 Score=38.03 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=30.3
Q ss_pred HHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHH
Q psy9376 136 HYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQ 175 (320)
Q Consensus 136 ~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~ 175 (320)
+|++|+++.|.. ..++.++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhcC
Confidence 488999999886 6799999999999999999963
No 206
>KOG3024|consensus
Probab=96.62 E-value=0.45 Score=42.07 Aligned_cols=242 Identities=17% Similarity=0.121 Sum_probs=152.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~ 106 (320)
.|++-+|...|.-....|...+.++.|++..-..+.+.-+.+....++........++.+.........
T Consensus 19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~----------- 87 (312)
T KOG3024|consen 19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLK----------- 87 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHH-----------
Confidence 479999999999999999999999999998888888877776666666666666555444211111111
Q ss_pred CChHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHhHhhcc-CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQ-EKAVEHYEQAATYFKGE-ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~-~~Ai~~y~kA~~~~~~~-~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
..+++.+.... +.- .+-..+..++++.-..- +-+..-......+|..+..-+++.+|..+|-......
T Consensus 88 ---------~anl~~ll~e~-~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s 157 (312)
T KOG3024|consen 88 ---------VANLAELLGEA-DPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDGS 157 (312)
T ss_pred ---------HHHHHHHHhhc-CCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCChH
Confidence 12233332222 222 22233445555554442 2222335567778888888888888877776443211
Q ss_pred hhhhhh--hcc-------hhHhHHHHHHHHHhh-hhHHHHHHHHHHHH------------h------CCCccCcHHHHHH
Q psy9376 185 LDSSLL--KYS-------AKEYFFRAALCHLCI-DVINAHNAIDRYKT------------I------YPAFQDSREYKLL 236 (320)
Q Consensus 185 ~~~~~~--~~~-------~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~------------~------~~~f~~s~e~~~l 236 (320)
.-...+ .|. .-.++.++.+..++. +..-+..++..|.+ . .+.+...+.-.++
T Consensus 158 ~~a~~ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~k~~~~~~~pllNFl 237 (312)
T KOG3024|consen 158 KFAYMLLEYSMSRGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGTKNPFPFEYPLLNFL 237 (312)
T ss_pred HHHHHHHHHHhhcccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccccCCCccccchHHHH
Confidence 000000 000 113345666777765 66777788888866 1 1122223444566
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhh
Q psy9376 237 RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLL 289 (320)
Q Consensus 237 ~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~ 289 (320)
.=|+..++-++...|..-...|+..++-|+--..-|.+|.+..=+..+.+++-
T Consensus 238 ~~Ll~t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~IgelyFgi~~~~~~s 290 (312)
T KOG3024|consen 238 HFLLETIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDRIGELYFGIRPKQPLS 290 (312)
T ss_pred HHHHHHHhccccHHHHHHHHHccchhhhhHHHHHHHHHHHHHHcCCCCCcccc
Confidence 66777787889999999999999999999999999999999887776666654
No 207
>KOG1463|consensus
Probab=96.57 E-value=0.57 Score=42.56 Aligned_cols=227 Identities=12% Similarity=0.117 Sum_probs=133.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
|.++...|+..+=.+.....-......+.+ .++..-..+-..+... ..+.-+.....+++-....++...--..-.+
T Consensus 55 ~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka-kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lear 133 (411)
T KOG1463|consen 55 GDLLAKEGDAEELRDLITSLRPFLSSVSKA-KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEAR 133 (411)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 667777777777666655555554444332 2344444444444444 4567777788888777666653332234456
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----hhhhhhhhcc
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT-----SLDSSLLKYS 193 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~-----~~~~~~~~~~ 193 (320)
+...|... ++|.+|+..-...+.=++...+...-.++...=..+|..+.+..+|-..+..+-.. +|. .++
T Consensus 134 li~Ly~d~-~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP--qlQ-- 208 (411)
T KOG1463|consen 134 LIRLYNDT-KRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP--QLQ-- 208 (411)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH--HHH--
Confidence 67777776 89999999988888777776666666666666667777888888887776655321 110 000
Q ss_pred hhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccC----------------------------------------cHHH
Q psy9376 194 AKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQD----------------------------------------SREY 233 (320)
Q Consensus 194 ~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~----------------------------------------s~e~ 233 (320)
+.-. ...|+. ..+..++.-|+..|-+++++|.. ++.-
T Consensus 209 a~lD-LqSGIl--ha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 209 ATLD-LQSGIL--HAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred HHHH-Hhccce--eecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 0000 000000 01114444555555555555543 1222
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 234 KLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 234 ~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
..+..+.+|+.+.+..+|++|+..|..-+.-||....=+..+.
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Ly 328 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLY 328 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHH
Confidence 3456667788888999999999999988775555444444333
No 208
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.53 E-value=0.66 Score=42.89 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=48.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-----hhHHHHHHHHHHHHhCCCccCcH
Q psy9376 157 LLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-----DVINAHNAIDRYKTIYPAFQDSR 231 (320)
Q Consensus 157 ~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-----d~~~~~~A~~~y~~~~~~f~~s~ 231 (320)
-..++.-+..+|++++|.+...++.+..-++. +|.++- |.....++++......+.-| .
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--------------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--------------LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChh--------------HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 34455667889999999999998887543332 233321 44444455554433333322 1
Q ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 232 EYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 232 e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
-...++.++ + -.+.+.+|-..++.+++.
T Consensus 330 L~~tLG~L~--~---k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 330 LLSTLGRLA--L---KNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHH--H---HhhHHHHHHHHHHHHHhc
Confidence 122335544 2 256777777777766653
No 209
>KOG2047|consensus
Probab=96.52 E-value=0.68 Score=45.48 Aligned_cols=221 Identities=15% Similarity=0.115 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q psy9376 27 GNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~ 86 (320)
.|+..+-+.-|..| |..|...|+.+.|...|++|....-... ...+..|-+-|..=..
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v--~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV--EDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch--HHHHHHHHHHHHHHHh
Confidence 46788888888887 6788899999999999999998853322 2345666666655333
Q ss_pred C-CHHHHHHHHHHHHHHH-------HHcCCh-----HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH
Q psy9376 87 T-DNEAAIDCLSKAIVIY-------TDMGRF-----TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA 153 (320)
Q Consensus 87 ~-~~~eA~~~~~kA~~l~-------~~~~~~-----~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a 153 (320)
. +++.|.++.++|..+= -+++.+ ...-+.|...+..-+.. |-++.--..|++.+++---.
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~-gtfestk~vYdriidLriaT------ 510 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL-GTFESTKAVYDRIIDLRIAT------ 510 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCC------
Confidence 3 8899999999887541 122222 22345566677776664 88888888888888874332
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCCccCcHH
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSRE 232 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~f~~s~e 232 (320)
.+...+.|..+....-++++-++|++-....+-..+ .+.|..=....+.+ +....+.|-+-|+++.+.-| ...
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v-----~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp-p~~ 584 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV-----YDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP-PEH 584 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-HHH
Confidence 456778888888888899999999987765432221 12222111111112 34455666666777666655 444
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 233 YKLLRILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 233 ~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
++.+.-++.-+++ +-|--..|+++|+++..
T Consensus 585 aKtiyLlYA~lEE-e~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 585 AKTIYLLYAKLEE-EHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHh
Confidence 4555444443432 45788899999998763
No 210
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.51 E-value=0.069 Score=52.14 Aligned_cols=133 Identities=11% Similarity=-0.009 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--c-----CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD--C-----VDQEKAVEHYEQAATYFKGEESNSSANKCLLKV 160 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~--l-----~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~l 160 (320)
+...|+.+|++|+++.|+... ++-.++.+|... . .+..++....+++..+-..... ..++.-+
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~----~~~~~al 426 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTY------AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL----PRIYEIL 426 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC----hHHHHHH
Confidence 478999999999999998754 444444444321 0 1234445555555444222211 3567777
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHH
Q psy9376 161 AHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILI 240 (320)
Q Consensus 161 a~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~ 240 (320)
|.+....|++++|...++++....++ .. . +...+++ +.-.|+.++|++.|.++...-|....+.+..+++
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~ps-~~------a-~~~lG~~--~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~ 496 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEMS-WL------N-YVLLGKV--YELKGDNRLAADAYSTAFNLRPGENTLYWIENLV 496 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-HH------H-HHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhcc
Confidence 88888899999999999999876542 11 1 1112222 2335677777777776554444444455555544
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.40 E-value=0.11 Score=50.24 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHH--------------HH-----H------HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAAN--------------MF-----K------MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAA 81 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~--------------~~-----~------~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa 81 (320)
+||-+.++.++.++.. .| . ...+.+.|.+.......-| | ..+-.....|
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-----P-~s~lfl~~~g 274 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-----P-NSALFLFFEG 274 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-----C-CcHHHHHHHH
Confidence 6899999999988721 00 0 1233455555555555544 3 3444555567
Q ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHH
Q psy9376 82 NCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKV 160 (320)
Q Consensus 82 ~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~l 160 (320)
.++... +.++|++++++|+..-.+. +.-..-++.++|.++.-+ .++++|.+++.+..+ ..+|+ .+-+....
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~-~~w~~A~~~f~~L~~----~s~WS-ka~Y~Y~~ 346 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQ-HDWEEAAEYFLRLLK----ESKWS-KAFYAYLA 346 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHH-chHHHHHHHHHHHHh----ccccH-HHHHHHHH
Confidence 777766 9999999999998544333 334456799999999987 999999999987776 33444 45566777
Q ss_pred HHHHHHccCH-------HHHHHHHHHHHHh
Q psy9376 161 AHHAALLQNY-------NKAIQIYEEVGRT 183 (320)
Q Consensus 161 a~~~~~~g~y-------~~Ai~~y~~~~~~ 183 (320)
|.++..+|+. ++|.++|.++-..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 8888889988 8888888887643
No 212
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.39 E-value=0.12 Score=47.50 Aligned_cols=121 Identities=16% Similarity=0.020 Sum_probs=93.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIA 120 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la 120 (320)
+..+-.+|++++|.+.-..+++-. .++. +........-.++..=+...++.+.-+++... .+.-+|
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~---~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~------L~~tLG 335 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQ---WDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL------LLSTLG 335 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhc---cChh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChh------HHHHHH
Confidence 455677899999999888877643 2332 22222233333777788888888877766553 799999
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
..+.+. +.+.+|-.+++.|+..-++ +..+..+|.++.++|+..+|-++++++...
T Consensus 336 ~L~~k~-~~w~kA~~~leaAl~~~~s-------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 336 RLALKN-KLWGKASEALEAALKLRPS-------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHh-hHHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999998 9999999999999987665 467888999999999999999999998854
No 213
>KOG2376|consensus
Probab=96.37 E-value=0.13 Score=49.76 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc----C-----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE----E-----SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~----~-----~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
..++|.|-++... |+|.+|++.+++|..+.++. . -..+..-+...++-++..+|+..+|...|......
T Consensus 176 el~yN~Ac~~i~~-gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 176 ELLYNTACILIEN-GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 4578888888887 99999999999996554331 1 12234456788899999999999999999988654
No 214
>KOG3785|consensus
Probab=96.35 E-value=0.18 Score=46.07 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=89.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHH
Q psy9376 86 KTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA 165 (320)
Q Consensus 86 ~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~ 165 (320)
..+++.|+..++-...+.++.. ...-.-+|.++-.. |+|++|.+.|.-+.+ ++.. -++...+++.++.
T Consensus 35 ~rDytGAislLefk~~~~~EEE-----~~~~lWia~C~fhL-gdY~~Al~~Y~~~~~--~~~~----~~el~vnLAcc~F 102 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEE-----DSLQLWIAHCYFHL-GDYEEALNVYTFLMN--KDDA----PAELGVNLACCKF 102 (557)
T ss_pred cccchhHHHHHHHhhccchhhh-----HHHHHHHHHHHHhh-ccHHHHHHHHHHHhc--cCCC----CcccchhHHHHHH
Confidence 3478888888776664443332 23567789999995 999999999987665 2222 2567889999999
Q ss_pred HccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHH
Q psy9376 166 LLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIE 244 (320)
Q Consensus 166 ~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~ 244 (320)
-+|.|.+|-..-.++.+..+... .+.+++...++-++-+..-++ ..++.|-++- ..+- +
T Consensus 103 yLg~Y~eA~~~~~ka~k~pL~~R-------------LlfhlahklndEk~~~~fh~~----LqD~~EdqLSLAsvh--Y- 162 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPKTPLCIR-------------LLFHLAHKLNDEKRILTFHSS----LQDTLEDQLSLASVH--Y- 162 (557)
T ss_pred HHHHHHHHHHHHhhCCCChHHHH-------------HHHHHHHHhCcHHHHHHHHHH----HhhhHHHHHhHHHHH--H-
Confidence 99999999877776654433322 233444333333222222112 1233333332 2211 1
Q ss_pred hcCHhHHHHHHHHHhhhcchhh
Q psy9376 245 EQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 245 ~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
----|++||.+|..++.=+|
T Consensus 163 --mR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 163 --MRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred --HHHHHHHHHHHHHHHHhcCh
Confidence 13478899999988876333
No 215
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.32 E-value=0.012 Score=34.27 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
+++..+|.+|..+|++++|+++|+++....+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999987654
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.32 E-value=0.18 Score=42.06 Aligned_cols=129 Identities=16% Similarity=0.044 Sum_probs=86.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIA 120 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la 120 (320)
...+..=|++.+..--.+..++.+.. ..-..+|+...+. ++.||...|++++. |-+..-+..+..++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA 131 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTV-------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLA 131 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHH
Confidence 33344445555444444444443222 2233344555555 78899999998874 44444456788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
+..... +++..|...+++..+..+.-.. .+...-.|.++..+|++.+|...|+.+....++.
T Consensus 132 ~Aqfa~-~~~A~a~~tLe~l~e~~pa~r~----pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 132 QAQFAI-QEFAAAQQTLEDLMEYNPAFRS----PDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHhh-ccHHHHHHHHHHHhhcCCccCC----CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 888885 8999999999988887655433 3456678999999999999999999888776653
No 217
>KOG3081|consensus
Probab=96.29 E-value=0.7 Score=40.64 Aligned_cols=129 Identities=21% Similarity=0.106 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 38 TRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 38 ~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
..+|.+|...|++++|.....+...+ .+.++. -.++.++ +.+-|....++...+..+. -..+.|.+|
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l---------E~~Al~--VqI~lk~~r~d~A~~~lk~mq~ided~-tLtQLA~aw 179 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL---------EAAALN--VQILLKMHRFDLAEKELKKMQQIDEDA-TLTQLAQAW 179 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHH
Confidence 44577888888888888766553222 111222 2445555 6666777777766665433 134456666
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
.+++.- . +.+..|--+|++..+-++.. ...+...+.+...+|+|++|....+.+.....+.+
T Consensus 180 v~la~g---g-ek~qdAfyifeE~s~k~~~T------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 180 VKLATG---G-EKIQDAFYIFEELSEKTPPT------PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HHHhcc---c-hhhhhHHHHHHHHhcccCCC------hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 666642 2 56788888888887744442 45777788999999999999999999998765554
No 218
>KOG0551|consensus
Probab=96.23 E-value=0.031 Score=50.29 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~ 106 (320)
|..++-++.|.+-|+-|...++|..|.++|.+.+.- +.+++.-.+..|.|-+.|-... ++..|++-..+|+.+.|.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 566778888999999999999999999999999875 6778888888999988776666 9999999999999988876
Q ss_pred CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
-. ++..-|.++-.. ..+.+|+.+.+..+.+..+
T Consensus 153 ~K------a~~R~Akc~~eL-e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 153 LK------AYIRGAKCLLEL-ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hh------hhhhhhHHHHHH-HHHHHHHHHHhhhhhhhHH
Confidence 54 677888887774 8888899888888776655
No 219
>KOG1538|consensus
Probab=96.21 E-value=0.5 Score=46.39 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHH------HHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEH------YEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~------y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
.+++-....+|-.+-.++.+.|.-+|..+ ... |+.++|++. .+-++++-+.... ...+.+..++
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmL-------iSa-Ge~~KAi~i~~d~gW~d~lidI~rkld~--~ere~l~~~a 754 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEML-------ISA-GEHVKAIEICGDHGWVDMLIDIARKLDK--AEREPLLLCA 754 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHh-------hcc-cchhhhhhhhhcccHHHHHHHHHhhcch--hhhhHHHHHH
Confidence 56666677777777777777776666554 344 666777764 4556666655432 2346788888
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHH
Q psy9376 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIE 241 (320)
Q Consensus 162 ~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~ 241 (320)
..+.++..+.-|.++|+++++.. .++.+....++..+|+.-.+.. |.|.+.-.+.. ..++.
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~k-----------------siVqlHve~~~W~eAFalAe~h-Pe~~~dVy~py-aqwLA 815 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDLK-----------------SLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPY-AQWLA 815 (1081)
T ss_pred HHHhhccccchHHHHHHHhccHH-----------------HHhhheeecccchHhHhhhhhC-ccccccccchH-HHHhh
Confidence 88888999999999999887531 2333334456666666654432 44444332221 22221
Q ss_pred HHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCC
Q psy9376 242 HIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSL 284 (320)
Q Consensus 242 a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~ 284 (320)
..++|++|-+.|-++.+ ++=-.++-+++..+..
T Consensus 816 -----E~DrFeEAqkAfhkAGr-----~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 816 -----ENDRFEEAQKAFHKAGR-----QREAVQVLEQLTNNAV 848 (1081)
T ss_pred -----hhhhHHHHHHHHHHhcc-----hHHHHHHHHHhhhhhh
Confidence 35788888888887776 2223344445544443
No 220
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.21 E-value=0.0089 Score=34.37 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+++.++|.++...|++++|++.|+++....|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36788999999999999999999999987665
No 221
>KOG3616|consensus
Probab=96.17 E-value=0.33 Score=48.30 Aligned_cols=119 Identities=24% Similarity=0.245 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHH------------HcCChHHHHHHHHHHHHHHhcC-CHHHHHH-
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVE------AANLHM------------KSGTKHDAACNLLDAANCFKKT-DNEAAID- 94 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~k------A~~~~~------------~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~- 94 (320)
++|++||.+|....++++|++||.+ |.++.+ .-|+......-|.-+.+-|.+. ..-+|++
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 5788888888889999999998765 444432 1111111111111111112222 1222222
Q ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHH------HHHhHhhccCCchHHH
Q psy9376 95 -----CLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYE------QAATYFKGEESNSSAN 154 (320)
Q Consensus 95 -----~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~------kA~~~~~~~~~~~~a~ 154 (320)
-..||+.+.....+...+..+|-.++.-|.+. |+++-|.++|. .|+.+|...++|..+-
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~-~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANK-GDFEIAEELFTEADLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccc-hhHHHHHHHHHhcchhHHHHHHHhccccHHHHH
Confidence 23455555554444445555677888888886 88888888764 4677787777766543
No 222
>KOG1070|consensus
Probab=96.16 E-value=0.46 Score=50.45 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLH--MKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~--~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~ 107 (320)
+.+++-+.+-. ..+-..++.++|.+..++|+..- +.-......=.+|.|+-+.|. .-+.-.+.|++|+....
T Consensus 1455 PNSSi~WI~YM-af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYM-AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred CCcchHHHHHH-HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHhcc---
Confidence 34555555543 23345788999999999998764 000011122234555544444 23445566777765542
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
+-.++..|..+|+.. +++++|.++|++.+.-|++ ...+|...|+.+.+..+-+.|-.++.+++..-|..
T Consensus 1529 ----~~~V~~~L~~iy~k~-ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1529 ----AYTVHLKLLGIYEKS-EKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred ----hHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 234799999999998 9999999999999999984 35799999999999999999999999998775554
Q ss_pred hhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH--HHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 188 SLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL--RILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 188 ~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l--~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
....+..+.. .|-=..+++++.-.-++.....+|.-.+-+.. .+-+ ..+..+..-.+|+.++.
T Consensus 1598 eHv~~IskfA-------qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei------k~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1598 EHVEFISKFA-------QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI------KHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hhHHHHHHHH-------HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH------ccCCHHHHHHHHHHHHh
Confidence 4332211110 01004466666666666666667665554432 2111 24556667777777764
No 223
>KOG1550|consensus
Probab=96.12 E-value=0.43 Score=47.12 Aligned_cols=148 Identities=22% Similarity=0.195 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHH---HHHcCChHHHHHHHHHHH
Q psy9376 50 WNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT------DNEAAIDCLSKAIVI---YTDMGRFTMAAKHHQTIA 120 (320)
Q Consensus 50 ~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~------~~~eA~~~~~kA~~l---~~~~~~~~~aa~~~~~la 120 (320)
...|...|+.+.+. +...+-..+|.||... |++.|+.+++.|..- -...|.+ .+...+|
T Consensus 228 ~~~a~~~~~~~a~~--------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~----~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP----PAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhh--------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC----ccccHHH
Confidence 56788888887766 2345566677887765 799999999999873 1122221 2577899
Q ss_pred HHHHhcc---C-CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhhhhhhhhhcc
Q psy9376 121 EIYETDC---V-DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQ---NYNKAIQIYEEVGRTSLDSSLLKYS 193 (320)
Q Consensus 121 ~~y~~~l---~-~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g---~y~~Ai~~y~~~~~~~~~~~~~~~~ 193 (320)
.+|.... . +++.|..+|.+|.+.-. ..+...+|.++..-. ++.+|.++|..+...+-...
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A----- 362 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELGN--------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA----- 362 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcCC--------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH-----
Confidence 9988831 2 67889999999888632 246677888886544 67899999999987543222
Q ss_pred hhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCCC
Q psy9376 194 AKEYFFRAALCHLCI--DVINAHNAIDRYKTIYPA 226 (320)
Q Consensus 194 ~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~ 226 (320)
+.+.++|+..- -..+...|+..|.++...
T Consensus 363 ----~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 363 ----IYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred ----HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 22334444321 234566677777665444
No 224
>KOG2796|consensus
Probab=96.11 E-value=0.88 Score=40.05 Aligned_cols=133 Identities=16% Similarity=0.194 Sum_probs=93.3
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 81 ANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 81 a~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
..++... .+.-.+..+.+.++.++ ..-......+|.+-... |+.+-|-.++++.-.-.........+.-+..+
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~-----e~~p~L~s~Lgr~~MQ~-GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYP-----EQEPQLLSGLGRISMQI-GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCC-----cccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4444444 67778888888877443 23344678888888886 99999988888654443344444556778889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCC
Q psy9376 160 VAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPA 226 (320)
Q Consensus 160 la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~ 226 (320)
.+.++.-.+++-+|...|+++...++++++. ..+-++|.+|. +..++-+-++...+.+|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a-------~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVA-------NNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhh-------hchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999998877666542 23447888886 555555555555554554
No 225
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.11 E-value=0.033 Score=45.96 Aligned_cols=51 Identities=25% Similarity=0.334 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhHhh
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD---CVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~---l~~~~~Ai~~y~kA~~~~~ 145 (320)
+++|+.-|++|+.+.|...+ ++..+|++|... ..+..+|-++|++|.+.|.
T Consensus 51 iedAisK~eeAL~I~P~~hd------Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHD------ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHH------HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 57788888888888887655 566666665553 1233445555555555444
No 226
>KOG4340|consensus
Probab=96.10 E-value=0.13 Score=45.80 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=84.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHH------HHHhcC-C-HHHHHHH--HHHHHHHHHHcCCh
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTK-HDAACNLLDAA------NCFKKT-D-NEAAIDC--LSKAIVIYTDMGRF 109 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~-~~aa~~~~~aa------~~y~~~-~-~~eA~~~--~~kA~~l~~~~~~~ 109 (320)
|-+|....+|..|++||++...++++.... .-.+.++.+++ .+...+ + +.---++ ++.|+.. +.+++
T Consensus 51 gyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkY--se~Dl 128 (459)
T KOG4340|consen 51 GYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKY--SEGDL 128 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--ccccC
Confidence 678888999999999999998887543322 12344444432 122222 2 1111111 1112211 11111
Q ss_pred ------------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy9376 110 ------------TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIY 177 (320)
Q Consensus 110 ------------~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y 177 (320)
...|....+.|-+.-+. |++++|+.-|+.|++.-.-. .-.-.+++-+....|+|+.|+++.
T Consensus 129 ~g~rsLveQlp~en~Ad~~in~gCllyke-gqyEaAvqkFqaAlqvsGyq------pllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 129 PGSRSLVEQLPSENEADGQINLGCLLYKE-GQYEAAVQKFQAALQVSGYQ------PLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred cchHHHHHhccCCCccchhccchheeecc-ccHHHHHHHHHHHHhhcCCC------chhHHHHHHHHHhhhhHHHHHHHH
Confidence 13355677777776666 99999999999998863221 224467888899999999999999
Q ss_pred HHHHHhh
Q psy9376 178 EEVGRTS 184 (320)
Q Consensus 178 ~~~~~~~ 184 (320)
.++..++
T Consensus 202 SEIieRG 208 (459)
T KOG4340|consen 202 SEIIERG 208 (459)
T ss_pred HHHHHhh
Confidence 9887543
No 227
>KOG0545|consensus
Probab=96.03 E-value=0.07 Score=46.20 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CChHHH------HHHHHHHHHHHhcC-CHHHHHHHHH
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKS------GTKHDA------ACNLLDAANCFKKT-DNEAAIDCLS 97 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~------~~~~~a------a~~~~~aa~~y~~~-~~~eA~~~~~ 97 (320)
-.|...+.+-||.+...|+|.+|..+|..|+.|.+.+ |++.+. ...+.|.++|+... ++-++++...
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 4688889999999999999999999999999998643 344332 23466777787776 7888888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 98 KAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 98 kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
..+..++.+-. +|+.-|.+.-.. =+..+|-.-+.+++++.+..
T Consensus 255 eiL~~~~~nvK------A~frRakAhaa~-Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 255 EILRHHPGNVK------AYFRRAKAHAAV-WNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHhcCCchHH------HHHHHHHHHHhh-cCHHHHHHHHHHHHhcChhh
Confidence 77777766644 788888887776 68889999999999887663
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.02 E-value=0.074 Score=42.43 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 76 NLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 76 ~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+...++..+... ++++|+..+++++.+.|-+.. .+..+-.+|... |++.+|+..|++....+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~------~~~~lm~~~~~~-g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEE------AYRLLMRALAAQ-GRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH------HHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 344455555555 899999999999999887655 688888888887 9999999999999887764
No 229
>KOG4648|consensus
Probab=96.00 E-value=0.014 Score=52.74 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=71.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
+-|+.|..+|.|++|++||.++..++.. .+..+.+-+.+|.+. .+..|-.-...|+.+....-. +|.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K------AYS 169 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK------AYS 169 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH------HHH
Confidence 3489999999999999999999998642 234556666777776 677777777777777654322 566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
.-|.+-... |+..+|-+-++.++++-+..
T Consensus 170 RR~~AR~~L-g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 170 RRMQARESL-GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHH-hhHHHHHHhHHHHHhhCccc
Confidence 666666664 88888989899888887663
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.97 E-value=0.46 Score=37.77 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
++..++..+... |++++|+...++++.+.|-+ ...+..+..+|...|++.+|++.|++..+
T Consensus 64 ~~~~l~~~~~~~-~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEA-GDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 577788888887 99999999999999998874 46888999999999999999999998864
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.90 E-value=0.019 Score=35.84 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.++..+|.+|..+|++++|++.|+++....|+++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 36788999999999999999999999998887764
No 232
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.88 E-value=0.023 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+.++.++|.+|... |++++|..++++++.+.+..
T Consensus 2 a~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQ-GRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhh-hhcchhhHHHHHHHHHHHHH
Confidence 56899999999998 99999999999999988764
No 233
>KOG1915|consensus
Probab=95.85 E-value=1.7 Score=41.31 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET 125 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~ 125 (320)
++++..|...|++|++.. ......+..-+.+-.+. ....|...+.+|+.+.|.-.. .|.+--.+-+.
T Consensus 86 q~e~~RARSv~ERALdvd------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq------lWyKY~ymEE~ 153 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ------LWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHHHHHhcc------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH------HHHHHHHHHHH
Confidence 566777777777777663 12233444444443344 677888999999999887665 56666666555
Q ss_pred ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 126 DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 126 ~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
||+..-|...|++=++.-|+. +++......=.+.++.+.|..+|++..--
T Consensus 154 -LgNi~gaRqiferW~~w~P~e-------qaW~sfI~fElRykeieraR~IYerfV~~ 203 (677)
T KOG1915|consen 154 -LGNIAGARQIFERWMEWEPDE-------QAWLSFIKFELRYKEIERARSIYERFVLV 203 (677)
T ss_pred -hcccHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhee
Confidence 488899999998888877664 34555555556667788888888877643
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.82 E-value=0.27 Score=47.49 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=98.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHH--HHHHHHHHHHHhc----C-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDA--ACNLLDAANCFKK----T-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~a--a~~~~~aa~~y~~----~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
.||=+.++....++.+ ...++.+.-. .-.|......+.. . +.+.|.+.+......||+..- .+...
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l------fl~~~ 273 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL------FLFFE 273 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH------HHHHH
Confidence 4788899998888766 3333332211 1112222221211 1 567788888888887775443 68899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
|.++... |+.++|++.|++++..-.+ .+....-++..+|.++.-+++|++|.++|.+..... .|+-.-|.+
T Consensus 274 gR~~~~~-g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s------~WSka~Y~Y 344 (468)
T PF10300_consen 274 GRLERLK-GNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES------KWSKAFYAY 344 (468)
T ss_pred HHHHHHh-cCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc------ccHHHHHHH
Confidence 9999998 9999999999999853322 223345688999999999999999999999988632 354444556
Q ss_pred HHHHHHHhh
Q psy9376 200 RAALCHLCI 208 (320)
Q Consensus 200 ~a~~~~l~~ 208 (320)
.++.|.+..
T Consensus 345 ~~a~c~~~l 353 (468)
T PF10300_consen 345 LAAACLLML 353 (468)
T ss_pred HHHHHHHhh
Confidence 667776543
No 235
>KOG2300|consensus
Probab=95.77 E-value=1.9 Score=41.14 Aligned_cols=190 Identities=14% Similarity=-0.004 Sum_probs=122.0
Q ss_pred HHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHhcC--CH
Q psy9376 13 AAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTK-HDAACNLLDAANCFKKT--DN 89 (320)
Q Consensus 13 ~~k~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~-~~aa~~~~~aa~~y~~~--~~ 89 (320)
+=||+.+.|... -+.--+|...++-....+...++.+.|....++|..+...+++. +.--.++..++.+|... .+
T Consensus 28 ~IkClqA~~~~~--is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~ 105 (629)
T KOG2300|consen 28 CIKCLQAIFQFQ--ISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF 105 (629)
T ss_pred HHHHHHHHhccC--ChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC
Confidence 346677777543 24557888888888899999999999999999999999888866 33445566677777765 57
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC
Q psy9376 90 EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 90 ~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~ 169 (320)
+.+....++|+++..... -=.-+..+.++++.... .++.-|++.+.--.+.......+....-.....+.++....+
T Consensus 106 ~~~KalLrkaielsq~~p--~wsckllfQLaql~~id-kD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d 182 (629)
T KOG2300|consen 106 PPAKALLRKAIELSQSVP--YWSCKLLFQLAQLHIID-KDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERD 182 (629)
T ss_pred chHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHhhh-ccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCcc
Confidence 788899999999976543 22234688999999887 999999998533222222221111111111222333333333
Q ss_pred H---HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHh
Q psy9376 170 Y---NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLC 207 (320)
Q Consensus 170 y---~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 207 (320)
. .+++..-.++...-.+++.-+...+.+|++..+++..
T Consensus 183 ~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~ 223 (629)
T KOG2300|consen 183 DYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYL 223 (629)
T ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHh
Confidence 3 3444444444444344444455567777777777653
No 236
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.77 E-value=0.65 Score=35.75 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcC---ChHH---HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 73 AACNLLDAANCFKKT---DNEAAIDCLSKAIVIYTDMG---RFTM---AAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 73 aa~~~~~aa~~y~~~---~~~eA~~~~~kA~~l~~~~~---~~~~---aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
.+.+|.-++..-++. -+++|...+++|.++.+... -++. -|-++-.|+..+-.. |+|++++..-++|+.+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L-gry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL-GRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHH
Confidence 455565555554443 78999999999999875432 2222 356788888899995 9999999999999988
Q ss_pred hhccCCch-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 144 FKGEESNS-----SANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 144 ~~~~~~~~-----~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
|...|.-. ....+-.+-+..+..+|+.++|+..|+.++.
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 86544211 1223334456667789999999999998874
No 237
>KOG1070|consensus
Probab=95.72 E-value=2.9 Score=44.83 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~ 126 (320)
|.-+.-.+.|++|-... .+-..|..+..+|... .+++|.++++.-++-+.+.-. +|...|..+.++
T Consensus 1511 G~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~------vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK------VWIMYADFLLRQ 1577 (1710)
T ss_pred CcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh------HHHHHHHHHhcc
Confidence 44455556666666553 4556778888888888 899999999988877763333 799999988887
Q ss_pred cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 127 CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 127 l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
.+-+.|...+.+|+...|... -.+....-|++-.+.|+.+++..+|+......|..
T Consensus 1578 -ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1578 -NEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred -cHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc
Confidence 777889999999999988832 35678888999999999999999999888765543
No 238
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.66 E-value=0.02 Score=32.82 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
++.++|.+|... |++++|+..|++.++.||+
T Consensus 2 a~~~~a~~~~~~-g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL-GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHHHHHCcC
Confidence 688999999997 9999999999999999886
No 239
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=1.6 Score=38.94 Aligned_cols=227 Identities=10% Similarity=0.062 Sum_probs=117.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
+.+|-..|++..=.+.-...-+.......+. .+.....+-..+... ..+.-+......++...+.++...--..-.+
T Consensus 52 ~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k-~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~K 130 (421)
T COG5159 52 FKLYVSKGDYCSLGDTITSSREAMEDFTKPK-ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECK 130 (421)
T ss_pred HHHHHhcCCcchHHHHHHhhHHHHHHhcchh-HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555555544443322221 222222222222222 5677777777777766544442222223345
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hhhhhhhhhcc
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR-----TSLDSSLLKYS 193 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~-----~~~~~~~~~~~ 193 (320)
+...+-.. |+|.+|+..-.-.+.-++..++...-..++.-=..+|....+..++-..+..+-. -+|..-+.
T Consensus 131 li~l~y~~-~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa--- 206 (421)
T COG5159 131 LIYLLYKT-GKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQA--- 206 (421)
T ss_pred HHHHHHhc-ccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHH---
Confidence 55556665 8999999887777766666665555556666666667777766666554443321 01111000
Q ss_pred hhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc-----------------------------------------CcHH
Q psy9376 194 AKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ-----------------------------------------DSRE 232 (320)
Q Consensus 194 ~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~-----------------------------------------~s~e 232 (320)
.-.+.. |+. ..|-.++.-|...|.++.++|. .++.
T Consensus 207 -~lDL~s-GIl--hcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~ 282 (421)
T COG5159 207 -QLDLLS-GIL--HCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRM 282 (421)
T ss_pred -HHHHhc-cce--eeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhh
Confidence 000000 000 0012222223333333323222 2334
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 233 YKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 233 ~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
-..+..+.+++.+.+..+|.+|++.|..-+--||.-+.-|.-++
T Consensus 283 I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LY 326 (421)
T COG5159 283 IRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLY 326 (421)
T ss_pred HHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHH
Confidence 45667778888888999999999999887765665555444333
No 240
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.50 E-value=3.1 Score=41.68 Aligned_cols=196 Identities=14% Similarity=0.077 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCH
Q psy9376 51 NNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQ 130 (320)
Q Consensus 51 ~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~ 130 (320)
.-|-+++.+|-......+++. ...-|..+ ...|+.|++-+.. .-.=.+...+.+...+|.++-....++
T Consensus 8 ~lAeey~~~A~~~~~~~~~~~-~l~~Y~kL--------I~~ai~CL~~~~~--~~~l~p~~ea~~~l~la~iL~~eT~n~ 76 (608)
T PF10345_consen 8 SLAEEYLEKAHSLATKVKSEE-QLKQYYKL--------IATAIKCLEAVLK--QFKLSPRQEARVRLRLASILLEETENL 76 (608)
T ss_pred HHHHHHHHHhHHHHHhcCChh-hHHHHHHH--------HHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHcCCH
Confidence 345566666666665554443 34445544 3458888887765 222357888999999999877544999
Q ss_pred HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhh
Q psy9376 131 EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDV 210 (320)
Q Consensus 131 ~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~ 210 (320)
+.|..+++|++.+.+..+-....-.+-.-++.++.+.+... |....++......+.+.. ...+.|+...+.+....
T Consensus 77 ~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~---~w~~~frll~~~l~~~~ 152 (608)
T PF10345_consen 77 DLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS---AWYYAFRLLKIQLALQH 152 (608)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHhc
Confidence 99999999999998774444445566667789998888777 999999887765443322 22334444444444333
Q ss_pred HHHHHHHHHHHHhCCCc--cCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhh
Q psy9376 211 INAHNAIDRYKTIYPAF--QDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSI 261 (320)
Q Consensus 211 ~~~~~A~~~y~~~~~~f--~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~ 261 (320)
++...|++.++.+...- .+...-.++-.++.+.-.-..+..+++++..+.+
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 56666666665543322 2344444444444333222233344555554444
No 241
>KOG4648|consensus
Probab=95.48 E-value=0.053 Score=49.14 Aligned_cols=99 Identities=25% Similarity=0.179 Sum_probs=79.4
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
..+-|+-|.+. .|++||.||.+++.++|-+.- .+.+-|.+|.+. ..+..|..-...|+.+.+. -..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV------~~~NRA~AYlk~-K~FA~AE~DC~~AiaLd~~------Y~K 166 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV------YHINRALAYLKQ-KSFAQAEEDCEAAIALDKL------YVK 166 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCcc------chhhHHHHHHHH-HHHHHHHHhHHHHHHhhHH------HHH
Confidence 34456777766 899999999999999987765 688888888886 8888888888888877554 356
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
+|.+-|..-..+|...+|-+-++.+++..+.+.
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 788888888889999999999999988766543
No 242
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.39 E-value=0.89 Score=40.68 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHH------------HHHH----cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC---
Q psy9376 27 GNKIDEAIECYTRAAN------------MFKM----AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~------------~~~~----~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--- 87 (320)
.+++..|...+..+.. +|.. .++..+|++.|..+++. +...+..++|.+|...
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--------g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--------GLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--------ccHHHHHhHHHHHhcCCCc
Confidence 6899999999988753 2211 24678888888865544 2345667788888874
Q ss_pred --CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc---c-C--CHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 88 --DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD---C-V--DQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 88 --~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~---l-~--~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
++.+|..+|++|+.. |+... +.+...+|.+|..- + . +..+|+.+|.+|.... .......
T Consensus 126 ~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~ 192 (292)
T COG0790 126 PLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLL 192 (292)
T ss_pred ccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHH
Confidence 899999999999755 33221 44577888887762 0 1 2337888888888765 2457788
Q ss_pred HHHHHHH----ccCHHHHHHHHHHHHHhhh
Q psy9376 160 VAHHAAL----LQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 160 la~~~~~----~g~y~~Ai~~y~~~~~~~~ 185 (320)
+|.+|.. ..++.+|+..|+++.....
T Consensus 193 lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 193 LGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8988864 2489999999999987543
No 243
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.37 E-value=0.45 Score=41.81 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~ 126 (320)
..-...++++.+|.+.+.+.+..........++|.-|... ++++|+.+++.+...+++.|+..-...++..+..++...
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 3456779999999999998888777777788888888887 999999999999999999999999999999999999996
Q ss_pred cCCHHHHHHHHHHH
Q psy9376 127 CVDQEKAVEHYEQA 140 (320)
Q Consensus 127 l~~~~~Ai~~y~kA 140 (320)
|+.+..+.+--+.
T Consensus 232 -~~~~~~l~~~leL 244 (247)
T PF11817_consen 232 -GDVEDYLTTSLEL 244 (247)
T ss_pred -CCHHHHHHHHHHH
Confidence 9999887765443
No 244
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.31 E-value=0.9 Score=34.99 Aligned_cols=101 Identities=11% Similarity=0.080 Sum_probs=70.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChH-HHHHH-
Q psy9376 45 KMAKKWNNAGKAFVEAANLHMKSGTK------HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFT-MAAKH- 115 (320)
Q Consensus 45 ~~~g~~~~A~~~y~kA~~~~~~~~~~------~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~-~aa~~- 115 (320)
...|-|++|...+.+|.++.+.+... -..+-++.-++..+..+ ++++++....+|+..+..-|... +.+..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 34588999999999999988765422 13466677777777777 89988888888888887666532 23333
Q ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 ---HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ---~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
-++-|..++.. |+.++|+..|+.+.++..+
T Consensus 100 IaaVfsra~Al~~~-Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 100 IAAVFSRAVALEGL-GRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHH
Confidence 34567778886 9999999999999987654
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.26 E-value=0.49 Score=44.85 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHH---HHHHHcCChHHHHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHHhHhhccCCchHHHHH
Q psy9376 88 DNEAAIDCLSKAI---VIYTDMGRFTMAAKHHQTIAEIYETD--------CVDQEKAVEHYEQAATYFKGEESNSSANKC 156 (320)
Q Consensus 88 ~~~eA~~~~~kA~---~l~~~~~~~~~aa~~~~~la~~y~~~--------l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~ 156 (320)
....|..++.+|+ ++.|.... +|.-++.++... -.+..+|.+.-++|+++-+.+ +.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~------a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D------a~a 340 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTE------CYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD------GKI 340 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHH------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC------HHH
Confidence 4678899999999 66655443 333333332221 034577888889999987775 578
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH
Q psy9376 157 LLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL 236 (320)
Q Consensus 157 ~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l 236 (320)
+..+|.++.-.|+++.|+..|+++....|+.+.. +++.+.++.+. |+.++|++..+.....-|.-....++
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~------~~~~~~~~~~~---G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL------YYYRALVHFHN---EKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH------HHHHHHHHHHc---CCHHHHHHHHHHHhccCchhhHHHHH
Confidence 8999999999999999999999999888876543 22222223222 45555555555544444443333444
Q ss_pred HHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 237 RILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 237 ~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
..+++-+ =....++||+.|-+-.+
T Consensus 412 ~~~~~~~---~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 412 KECVDMY---VPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHH---cCCchhhhHHHHhhccc
Confidence 4444223 24678889998876554
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=1.6 Score=36.62 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=74.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 104 TDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 104 ~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
..+|...-+......++..+... +++++|+..++.++..-.+. ....-+-.+++.+...+|++++|+..++.....
T Consensus 80 ~~n~~t~Ya~laaL~lAk~~ve~-~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~ 155 (207)
T COG2976 80 QANGKTIYAVLAALELAKAEVEA-NNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEE 155 (207)
T ss_pred hhccccHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 44555556666778888888887 99999999999988754432 122334578899999999999999988865432
Q ss_pred hhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH
Q psy9376 184 SLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL 236 (320)
Q Consensus 184 ~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l 236 (320)
+-.... ...+| -+....++-..|...|.+....+++.....++
T Consensus 156 ~w~~~~--~elrG--------Dill~kg~k~~Ar~ay~kAl~~~~s~~~~~~l 198 (207)
T COG2976 156 SWAAIV--AELRG--------DILLAKGDKQEARAAYEKALESDASPAAREIL 198 (207)
T ss_pred cHHHHH--HHHhh--------hHHHHcCchHHHHHHHHHHHHccCChHHHHHH
Confidence 111000 00011 11123466666777777666666555554444
No 247
>KOG2047|consensus
Probab=95.18 E-value=2.9 Score=41.30 Aligned_cols=207 Identities=11% Similarity=0.048 Sum_probs=134.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET 125 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~ 125 (320)
.|+..+-+..|..|..--.-..-+......+...|..|... +.+.|...+++|...- -+..++.+.+|.+-|..-..
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP--YKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--ccchHHHHHHHHHHHHHHHh
Confidence 35677777788777654321111122346677778888887 8899999999997653 34456778899999988777
Q ss_pred ccCCHHHHHHHHHHHHhHhhc--------cC----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcc
Q psy9376 126 DCVDQEKAVEHYEQAATYFKG--------EE----SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYS 193 (320)
Q Consensus 126 ~l~~~~~Ai~~y~kA~~~~~~--------~~----~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~ 193 (320)
. .+++.|..+.++|...-.. .. .-.....++...+++-...|-++.--.+|+++....+-.|...
T Consensus 438 h-~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-- 514 (835)
T KOG2047|consen 438 H-ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-- 514 (835)
T ss_pred h-hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH--
Confidence 6 8999999999998754322 11 1112345666777777788888888889999988765555431
Q ss_pred hhHhHHHHHHHHHh-hhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhc-CHhHHHHHHHHHhhhcchhh
Q psy9376 194 AKEYFFRAALCHLC-IDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQ-NVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 194 ~~~~~~~a~~~~l~-~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~-d~~~~~~Ai~~ye~~~~ld~ 266 (320)
...-+. +.-...++++..|+.-++.|+.-.-+.+-...+.-+... .....+.|-..|+++++.=|
T Consensus 515 --------~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 515 --------INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred --------HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 111111 234567788888988888887654443322222222111 23578889999999887544
No 248
>KOG4642|consensus
Probab=95.17 E-value=0.48 Score=41.02 Aligned_cols=92 Identities=18% Similarity=0.093 Sum_probs=77.2
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 81 ANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 81 a~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
|+.+... .+..|+.+|.+|+.+.|..-. ++.+-+.+|.+. .+++.+.+--.+|+++.+. ......-
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~------Y~tnralchlk~-~~~~~v~~dcrralql~~N------~vk~h~f 83 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVAS------YYTNRALCHLKL-KHWEPVEEDCRRALQLDPN------LVKAHYF 83 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcch------hhhhHHHHHHHh-hhhhhhhhhHHHHHhcChH------HHHHHHH
Confidence 4544444 799999999999999886644 789999999996 9999999999999998776 3667788
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 160 VAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 160 la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
+|........|++||..++++.....
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHh
Confidence 99999999999999999999965433
No 249
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.11 E-value=2.2 Score=38.11 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC---
Q psy9376 27 GNKIDEAIECYTRA------------ANMFKM----AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a------------g~~~~~----~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--- 87 (320)
..+...|+++|..+ |.+|.. ..|..+|...|.+|++.- +... +.+...++.+|...
T Consensus 90 ~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~ 164 (292)
T COG0790 90 SRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQA 164 (292)
T ss_pred cccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhh
Confidence 56789999999877 344443 348999999999999773 3321 34466666666653
Q ss_pred -----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 88 -----DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDC---VDQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 88 -----~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l---~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
+...|...|.+|.... ...+..++|.+|..-+ .++.+|+.+|.+|.+.-. ......
T Consensus 165 ~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--------~~a~~~ 228 (292)
T COG0790 165 LAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--------GAACYN 228 (292)
T ss_pred hcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--------HHHHHH
Confidence 3347888888886654 2346888888887632 488999999999998532 245566
Q ss_pred HHHHHHHcc---------------CHHHHHHHHHHHHHh
Q psy9376 160 VAHHAALLQ---------------NYNKAIQIYEEVGRT 183 (320)
Q Consensus 160 la~~~~~~g---------------~y~~Ai~~y~~~~~~ 183 (320)
++ ++...| +...|...+.+....
T Consensus 229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 66 555554 666677777766543
No 250
>KOG1915|consensus
Probab=94.97 E-value=2.9 Score=39.93 Aligned_cols=147 Identities=17% Similarity=0.101 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHH----------------------HHH--HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAA----------------------NMF--KMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAAN 82 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag----------------------~~~--~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~ 82 (320)
.|+.+.-.+.|++|- .+| ....|.+.+.+.|+.++++-++.. +.-+..+.-.+.
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk--FtFaKiWlmyA~ 412 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK--FTFAKIWLMYAQ 412 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc--chHHHHHHHHHH
Confidence 678888889998882 111 235789999999999999876533 234555555554
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 83 CFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 83 ~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
--... +.+.|...+-.|+-..|+..-+. .|..+-. . |++++....+|++=++.-|++ ..++.+.|
T Consensus 413 feIRq~~l~~ARkiLG~AIG~cPK~KlFk----~YIelEl---q-L~efDRcRkLYEkfle~~Pe~------c~~W~kya 478 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIGKCPKDKLFK----GYIELEL---Q-LREFDRCRKLYEKFLEFSPEN------CYAWSKYA 478 (677)
T ss_pred HHHHHcccHHHHHHHHHHhccCCchhHHH----HHHHHHH---H-HhhHHHHHHHHHHHHhcChHh------hHHHHHHH
Confidence 44444 77778888877777776654322 2333322 2 467788888888877766653 56777888
Q ss_pred HHHHHccCHHHHHHHHHHHHHh-hhhhhh
Q psy9376 162 HHAALLQNYNKAIQIYEEVGRT-SLDSSL 189 (320)
Q Consensus 162 ~~~~~~g~y~~Ai~~y~~~~~~-~~~~~~ 189 (320)
.+=..+|+.+.|..+|+-+... .++.|.
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 8888888888888888877643 334343
No 251
>KOG1464|consensus
Probab=94.95 E-value=2.5 Score=37.48 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=84.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh--hhhhhhhcchhHhH
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS--LDSSLLKYSAKEYF 198 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~--~~~~~~~~~~~~~~ 198 (320)
.+|..+ .+-.+--.+|++|+.+-.....+.-.+-...-=|....+.|++++|-.-|=++-... .+++. +-..-.|
T Consensus 199 QmYT~q-KnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR-RttCLKY- 275 (440)
T KOG1464|consen 199 QMYTEQ-KNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR-RTTCLKY- 275 (440)
T ss_pred hhhhhh-cccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc-hhHHHHH-
Confidence 356665 566666678999998766665544333333333456677888988876555554431 11111 0000011
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHH----HHHH
Q psy9376 199 FRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTT----VLLR 274 (320)
Q Consensus 199 ~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~----~l~~ 274 (320)
+..+...+-.+.. .++ -+...-|....|-..+.+++.|++.+|-..|+.-++.-...+--||+.+. .+.+
T Consensus 276 LVLANMLmkS~iN----PFD--sQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~n 349 (440)
T KOG1464|consen 276 LVLANMLMKSGIN----PFD--SQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIREHIEDLLRN 349 (440)
T ss_pred HHHHHHHHHcCCC----CCc--ccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 1111111100100 000 01123456678888889999999999999999999998888877887543 4445
Q ss_pred HHHhh
Q psy9376 275 IKKQV 279 (320)
Q Consensus 275 i~~~~ 279 (320)
|+.++
T Consensus 350 iRTQV 354 (440)
T KOG1464|consen 350 IRTQV 354 (440)
T ss_pred HHHHH
Confidence 55444
No 252
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.83 E-value=0.71 Score=38.96 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAI 174 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai 174 (320)
..+.....+|..|.+ .+.++++.+|.+++++.....+. ..+++..|+.++..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~--n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNF--NPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHhcchhhhh
Confidence 446789999999997 59999999999999998876433 3679999999999999999884
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.70 E-value=3 Score=37.25 Aligned_cols=100 Identities=16% Similarity=0.050 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHhHhhc---c-CC----chHHH
Q psy9376 87 TDNEAAIDCLSKAIVIYTDMGR---FTMAAKHHQTIAEIYETDCV-DQEKAVEHYEQAATYFKG---E-ES----NSSAN 154 (320)
Q Consensus 87 ~~~~eA~~~~~kA~~l~~~~~~---~~~aa~~~~~la~~y~~~l~-~~~~Ai~~y~kA~~~~~~---~-~~----~~~a~ 154 (320)
.+.+.|..++.|+-.+.. ..+ ....++.++++|.-.... + +++.|+.++++|.++... . .. .....
T Consensus 7 ~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~-~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSK-KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred CCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 366777777777766664 222 345677899999887776 8 999999999999999633 1 11 13456
Q ss_pred HHHHHHHHHHHHccCHH---HHHHHHHHHHHhhhhhh
Q psy9376 155 KCLLKVAHHAALLQNYN---KAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~---~Ai~~y~~~~~~~~~~~ 188 (320)
.++..++.+|...+.++ +|..+.+.+....++.+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~ 121 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP 121 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc
Confidence 78899999998888754 45555555544444433
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.68 E-value=1.1 Score=42.80 Aligned_cols=123 Identities=15% Similarity=0.059 Sum_probs=89.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc----------CChHH----
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM----------GRFTM---- 111 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~----------~~~~~---- 111 (320)
..++..-+.+=.+|+++++ +.+.+|..++.= .. ...+|.++|+||++.-+.. |...+
T Consensus 181 ERnp~aRIkaA~eALei~p------dCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINP------DCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred cCCHHHHHHHHHHHHHhhh------hhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 5788888888899999853 466666655421 12 4678888888888864422 11101
Q ss_pred -----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 112 -----AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 112 -----aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
-..+...+|.+..+. |+.++||+.+...++.++... ...+..++.+.+..++.|.++-.++.+--+
T Consensus 253 Rdt~~~~y~KrRLAmCarkl-Gr~~EAIk~~rdLlke~p~~~----~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKL-GRLREAIKMFRDLLKEFPNLD----NLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cccchhhhhHHHHHHHHHHh-CChHHHHHHHHHHHhhCCccc----hhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 123456789999996 999999999999998887533 355888999999999999999888777543
No 255
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.56 E-value=0.21 Score=41.36 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhhhhhh
Q psy9376 129 DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN-----------YNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 129 ~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~-----------y~~Ai~~y~~~~~~~~~~~ 188 (320)
-+++||.=|++|+.+.|.. .+++..+|..|..++. |++|.++|+++....|+++
T Consensus 50 miedAisK~eeAL~I~P~~------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNK------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4677888888888887774 4577778888765543 5677777777777666654
No 256
>KOG2796|consensus
Probab=94.51 E-value=3.2 Score=36.70 Aligned_cols=138 Identities=15% Similarity=0.198 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcc
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYS 193 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~ 193 (320)
.+..-+..++... ++|.-.+..+.+.++.++..+ ......+|.+..+.||.+-|-.+|+++.+... .+....
T Consensus 178 ~Vmy~~~~~llG~-kEy~iS~d~~~~vi~~~~e~~-----p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~--kL~~~q 249 (366)
T KOG2796|consen 178 RVMYSMANCLLGM-KEYVLSVDAYHSVIKYYPEQE-----PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ--KLDGLQ 249 (366)
T ss_pred HHHHHHHHHHhcc-hhhhhhHHHHHHHHHhCCccc-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh--hhhccc
Confidence 3455566666775 899999999999999765442 45678899999999999999999998764310 000000
Q ss_pred hhHhHHHHHHHHHhhhhHHHHHHHHHHHHh---CCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 194 AKEYFFRAALCHLCIDVINAHNAIDRYKTI---YPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 194 ~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~---~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
.+.... .....++....+.-+|...|.+. ++.-+.....+.+-.+ + .++..+|++..+++...+|.
T Consensus 250 ~~~~V~-~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll---Y----lg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 250 GKIMVL-MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL---Y----LGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhHHHH-hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH---H----HHHHHHHHHHHHHHhccCCc
Confidence 000000 01111223445555566666443 3333333333332222 2 68999999999999886554
No 257
>KOG0551|consensus
Probab=94.47 E-value=0.57 Score=42.44 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~ 126 (320)
|++..-..+. +++.....-|.+++.|..|..=|+-|.+. +|..|+.+|.+.+.- +.++++--+..|.|-|.+-...
T Consensus 56 gd~~~~~~~L-qslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l 132 (390)
T KOG0551|consen 56 GDPNPDNVCL-QSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYL 132 (390)
T ss_pred CCCCccHHHH-HHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHH
Confidence 4443333333 33444445678889999999999998888 999999999999764 4567777788899988887774
Q ss_pred cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 127 CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 127 l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
|+|-.|+.--.+|+.+-+.. ..++.+-+.++..+..+.+|+...++...
T Consensus 133 -~NyRs~l~Dcs~al~~~P~h------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 133 -GNYRSALNDCSAALKLKPTH------LKAYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred -HHHHHHHHHHHHHHhcCcch------hhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987764 67888889999999998888877766543
No 258
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.44 E-value=0.11 Score=31.29 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+.++.++|.+|...|++++|..+++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 468899999999999999999999999764
No 259
>KOG1550|consensus
Probab=94.37 E-value=5.9 Score=39.21 Aligned_cols=120 Identities=20% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 44 FKMAKKWNNAGKAFVEAANLH---MKSGTKHDAACNLLDAANCFKKT------DNEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 44 ~~~~g~~~~A~~~y~kA~~~~---~~~~~~~~aa~~~~~aa~~y~~~------~~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
+...+|.+.|+.+|..+++-+ ...+ ...+...+|.+|... ++..|+.+|.+|.++ |+++
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~~~---- 326 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----GNPD---- 326 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc----CCch----
Confidence 344555566666666555521 1111 112344556666553 355666666666433 3322
Q ss_pred HHHHHHHHHHhcc--CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHh
Q psy9376 115 HHQTIAEIYETDC--VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL----QNYNKAIQIYEEVGRT 183 (320)
Q Consensus 115 ~~~~la~~y~~~l--~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~----g~y~~Ai~~y~~~~~~ 183 (320)
+.+.+|.+|.... .++.+|.++|..|...-- ..++..++.+|..- -+...|..+|.++...
T Consensus 327 a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--------~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 327 AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--------ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 4566666666531 135666666666665311 23555566655432 3566666666666554
No 260
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.28 E-value=2.8 Score=35.21 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS 152 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~ 152 (320)
.-.-..++..+.+. ++++|...++.++..-. +..--+-+-.++|.+.-.+ |.+++|+..+. ....+..
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---De~lk~l~~lRLArvq~q~-~k~D~AL~~L~-------t~~~~~w 157 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK---DENLKALAALRLARVQLQQ-KKADAALKTLD-------TIKEESW 157 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch---hHHHHHHHHHHHHHHHHHh-hhHHHHHHHHh-------ccccccH
Confidence 33344455666665 88999998888864322 2223344667888888886 89998887663 3333444
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 153 ANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 153 a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
.+.....-|+++...|+-++|...|+++....
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55667778999999999999999999998764
No 261
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.27 E-value=0.063 Score=29.45 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
.++..+|.++... +++++|+.+|++++.+.+
T Consensus 2 ~~~~~~a~~~~~~-~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKL-GDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHH-hhHHHHHHHHHHHHccCC
Confidence 3688999999997 999999999999998754
No 262
>KOG2610|consensus
Probab=94.26 E-value=0.57 Score=42.59 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
-+++|-+..++|+++.+-..+ +..-.+.+++-. |++.++.+..++.-+..+. .+..+...|-..+-.+++.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~W------a~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCW------ASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHTALFHIEG 260 (491)
T ss_pred cchhHHHHHHhhccCCCcchH------HHHHHHHHHHhc-chhhhHHHHHHhcccchhh--hhHHHhhhhHHHHHhhhcc
Confidence 578899999999988776655 677788899998 9999999998776666552 3455666778889999999
Q ss_pred cCHHHHHHHHHHHHH
Q psy9376 168 QNYNKAIQIYEEVGR 182 (320)
Q Consensus 168 g~y~~Ai~~y~~~~~ 182 (320)
+.|+.|+++|++-.-
T Consensus 261 aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 261 AEYEKALEIYDREIW 275 (491)
T ss_pred cchhHHHHHHHHHHH
Confidence 999999999997653
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.20 E-value=3.3 Score=35.60 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=65.4
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
....-|..+++-|..|.+. |-..-|.--|.+++.+.|.. .+++.-+|-.+...|+|+-|.+.|+.....+|+.
T Consensus 60 ~~eeRA~l~fERGvlYDSl-GL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 60 TDEERAQLLFERGVLYDSL-GLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred ChHHHHHHHHHhcchhhhh-hHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 4566778899999999996 99999999999999999885 6799999999999999999999999998877776
Q ss_pred hh
Q psy9376 188 SL 189 (320)
Q Consensus 188 ~~ 189 (320)
..
T Consensus 133 ~Y 134 (297)
T COG4785 133 NY 134 (297)
T ss_pred hH
Confidence 54
No 264
>KOG4814|consensus
Probab=94.07 E-value=0.34 Score=47.42 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=60.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
|...+..++- .+|.-++++|..++..++.+.-...-+...+.+.-+|..+.+.|+|.++++++.+..++++..
T Consensus 358 Wn~A~~~F~~--~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 358 WNTAKKLFKM--EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHhhHHHHHH--HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 4555555555 699999999999999888875444448889999999999999999999999999988776654
No 265
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.71 E-value=1.4 Score=39.43 Aligned_cols=129 Identities=12% Similarity=0.055 Sum_probs=89.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK-T-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~-~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
+..+..+..+.|...|.+|.+- ....-..|...|.+-.. . +...|...|+.++..++.... .|..-
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------~~~~Y 76 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKD------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------FWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------HHHHH
T ss_pred HHHHHhCChHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------HHHHH
Confidence 4444455578888888888621 11223456666677333 3 777799999999999887765 45555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
...+... ++.+.|..+|++++...+... .....|....+.=...|+.+...+++++.....++
T Consensus 77 ~~~l~~~-~d~~~aR~lfer~i~~l~~~~---~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 77 LDFLIKL-NDINNARALFERAISSLPKEK---QSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHT-T-HHHHHHHHHHHCCTSSCHH---HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHh-CcHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5666675 999999999999998755432 13457777888888889999999999998876554
No 266
>KOG3081|consensus
Probab=93.54 E-value=2.7 Score=37.08 Aligned_cols=141 Identities=12% Similarity=0.016 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-----CHHHH
Q psy9376 27 GNKIDEAIECYTRAA---------NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-----DNEAA 92 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag---------~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-----~~~eA 92 (320)
.+++++|.......+ .++-...+.+-|.....++.++.. -..+.+++..+.+. ..++|
T Consensus 121 ~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--------d~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 121 DGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--------DATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred CCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--------HHHHHHHHHHHHHHhccchhhhhH
Confidence 479999988876632 344455667777777777766632 12344555665553 34444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 93 IDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
--.|+.-.+- +......+...+.+...+ |++++|...++.|++-.... .+++.++..+-.-+|...+
T Consensus 193 fyifeE~s~k------~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~d------petL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 193 FYIFEELSEK------TPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKD------PETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHhcc------cCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCChH
Confidence 4444433321 444445677888888886 99999999999999876654 5788888888888998888
Q ss_pred HHHHHHHHHHh-hhhhh
Q psy9376 173 AIQIYEEVGRT-SLDSS 188 (320)
Q Consensus 173 Ai~~y~~~~~~-~~~~~ 188 (320)
+.+-+-.-... .+..+
T Consensus 260 ~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 260 VTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHhcCCcch
Confidence 87655544433 44433
No 267
>KOG2041|consensus
Probab=93.54 E-value=9 Score=38.43 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=61.1
Q ss_pred hccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHH---cCChHHHHHHHHHHHHHHhcC-CHH
Q psy9376 21 FITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANL------HMK---SGTKHDAACNLLDAANCFKKT-DNE 90 (320)
Q Consensus 21 ~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~------~~~---~~~~~~aa~~~~~aa~~y~~~-~~~ 90 (320)
+.++| |++++|-..|-.+ .+-|-|++.+.+..+- ++. -.+...--.++.++|..+..+ .++
T Consensus 743 i~~~~--g~feeaek~yld~-------drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 743 ISAFY--GEFEEAEKLYLDA-------DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred Hhhhh--cchhHhhhhhhcc-------chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 3777777776543 3334555544444332 222 113345566788888877776 788
Q ss_pred HHHHHHHHHHHHH---------HHcCChHHHH-------HHHHHHHHHHHhccCCHHHHHHHHHH
Q psy9376 91 AAIDCLSKAIVIY---------TDMGRFTMAA-------KHHQTIAEIYETDCVDQEKAVEHYEQ 139 (320)
Q Consensus 91 eA~~~~~kA~~l~---------~~~~~~~~aa-------~~~~~la~~y~~~l~~~~~Ai~~y~k 139 (320)
+|.++|.+....- ...|.....+ ..+-.+|..+... |.-++|+++|.+
T Consensus 814 ~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~sv-GMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 814 EAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSV-GMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhh-chHHHHHHHHHh
Confidence 8888776654321 1112211112 1356677777776 888888887743
No 268
>KOG0545|consensus
Probab=93.52 E-value=1.8 Score=37.78 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc------CCch------HHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE------ESNS------SANKCLLKVAHHAALLQNYNKAIQIYE 178 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~------~~~~------~a~~~~~~la~~~~~~g~y~~Ai~~y~ 178 (320)
.+.-++..-|+-+... |+|.+|+..|..|+.+.+.. +.+. .....+.+..+++...|+|-++++.-.
T Consensus 176 kav~~l~q~GN~lfk~-~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKL-GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhHHHHHhhhhhhhh-ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 3344566667666665 99999999999998765442 2211 123457788999999999999999999
Q ss_pred HHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCCccC--cHHHHHH
Q psy9376 179 EVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQD--SREYKLL 236 (320)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~f~~--s~e~~~l 236 (320)
++++..+++- +. +|+-++.+... ...+++.-+.....+++...+ ++|-+++
T Consensus 255 eiL~~~~~nv------KA-~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~l 308 (329)
T KOG0545|consen 255 EILRHHPGNV------KA-YFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLL 308 (329)
T ss_pred HHHhcCCchH------HH-HHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 9998766542 33 34445555543 444444444444445555544 4555554
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.41 E-value=1.1 Score=38.29 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~ 108 (320)
++=+.+..+=|+.|-..|-+.-|..-|.+++.+.+ ..+.+++-+|..+... +++.|.+.|....++.|..+.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCC------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 33333444444555555555555555555555432 1233444444444333 555555555555555544443
No 270
>KOG1308|consensus
Probab=93.34 E-value=0.051 Score=49.17 Aligned_cols=120 Identities=18% Similarity=0.086 Sum_probs=82.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIA 120 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la 120 (320)
.-....|.++.|++.|..++++. ...+..|..-+.++.++ .+..|++-+..|+++.++.-. -|.--|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~ln------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~------~ykfrg 189 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELN------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK------GYKFRG 189 (377)
T ss_pred HHHhcCcchhhhhcccccccccC------CchhhhcccccceeeeccCCchhhhhhhhhhccCccccc------ccchhh
Confidence 34455789999999999999983 34777888888999998 899999999999999876543 344445
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAI 174 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai 174 (320)
...+.+ |++++|...+..++.+--+........++.-+++.+-..-+.|+++.
T Consensus 190 ~A~rll-g~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 190 YAERLL-GNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHh-hchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 554554 89999999999998875444332333333334444333334444443
No 271
>KOG2581|consensus
Probab=93.26 E-value=7.2 Score=36.50 Aligned_cols=236 Identities=14% Similarity=0.121 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTK----HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG-RFTMAAKHHQTIA 120 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~----~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~-~~~~aa~~~~~la 120 (320)
.+++.+|..+-...+.-. ..++. .-++..|.-...+|... +... ++.+..+.---...+ +..+.+....-+=
T Consensus 139 ~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~-~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLAD-IRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred hHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 466666665544433211 11111 13556666666666665 3222 233333322223333 4555666566666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHH
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFR 200 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~ 200 (320)
..|-.. +.|++|-..-.++. ||+..+....+..+.-+|.+..-+++|..|.+++..+.+..|+...+ |+--.
T Consensus 217 r~yL~n-~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~al-----Gf~q~ 288 (493)
T KOG2581|consen 217 RNYLHN-KLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAAL-----GFRQQ 288 (493)
T ss_pred HHHhhh-HHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhh-----hHHHH
Confidence 666666 77888877665443 55555555678889999999999999999999999999988875443 22222
Q ss_pred HHHHHHhhh--hHHHHHHHHHHHHhCCCccCcHHHHHH---HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHH---
Q psy9376 201 AALCHLCID--VINAHNAIDRYKTIYPAFQDSREYKLL---RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVL--- 272 (320)
Q Consensus 201 a~~~~l~~d--~~~~~~A~~~y~~~~~~f~~s~e~~~l---~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l--- 272 (320)
..++.+... +|+..+- .-|.+....+.| ..|-.|+..+|..+|.+-++.|..-...|-..+-|.
T Consensus 289 v~k~~ivv~ll~geiPer--------s~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR 360 (493)
T KOG2581|consen 289 VNKLMIVVELLLGEIPER--------SVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLR 360 (493)
T ss_pred HHHHHHHHHHHcCCCcch--------hhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 233333210 1111000 112222111211 455667778899999999999976665555444332
Q ss_pred -HHHHHhhcCCCCCchhhhchhHHHhHHHHH
Q psy9376 273 -LRIKKQVGRTSLDSSLLKYSAKEYFFRAAL 302 (320)
Q Consensus 273 -~~i~~~~~~~~~~~~l~~~~~~~y~~~a~~ 302 (320)
+-||+.|- ...-++.+.|+.|.-.+-++
T Consensus 361 ~NVIkTgIR--~ISlsYSRISl~DIA~kL~l 389 (493)
T KOG2581|consen 361 HNVIKTGIR--KISLSYSRISLQDIAKKLGL 389 (493)
T ss_pred HHHHHHhhh--heeeeeeeccHHHHHHHhcC
Confidence 44555444 33346778888887665443
No 272
>KOG2053|consensus
Probab=93.25 E-value=3.6 Score=42.06 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy9376 58 VEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHY 137 (320)
Q Consensus 58 ~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y 137 (320)
.++.++.++.++.. .+.++.-+ ...+..+.++|..|++.--.. ..+. -..+.-+-.+|+.. +++++|..+|
T Consensus 30 ~~~~kllkk~Pn~~-~a~vLkaL-sl~r~gk~~ea~~~Le~~~~~-~~~D-----~~tLq~l~~~y~d~-~~~d~~~~~Y 100 (932)
T KOG2053|consen 30 AKLGKLLKKHPNAL-YAKVLKAL-SLFRLGKGDEALKLLEALYGL-KGTD-----DLTLQFLQNVYRDL-GKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHCCCcH-HHHHHHHH-HHHHhcCchhHHHHHhhhccC-CCCc-----hHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 34444555555543 34444432 222333777777665533222 2221 12577777888886 8888888888
Q ss_pred HHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH----HHHHHH
Q psy9376 138 EQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK----AIQIYE 178 (320)
Q Consensus 138 ~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~----Ai~~y~ 178 (320)
++++.-+|... .+..+=..|.+.++|.+ |++.|.
T Consensus 101 e~~~~~~P~ee-------ll~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 101 ERANQKYPSEE-------LLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHhhCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877732 23333334445454443 455555
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.87 E-value=1.2 Score=41.48 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=74.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT----------DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~----------~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
.|+.++|.+....++.-. .....+.|-..|.+|+.. ..++|+..|.++-++.+..-. -
T Consensus 195 ~gdre~Al~il~~~l~~~-----~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-------G 262 (374)
T PF13281_consen 195 PGDREKALQILLPVLESD-----ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-------G 262 (374)
T ss_pred CCCHHHHHHHHHHHHhcc-----CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-------h
Confidence 789999999888864331 223556788889998875 267888888888877743322 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH----hHhhccCCchHHHHH--HHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAA----TYFKGEESNSSANKC--LLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~----~~~~~~~~~~~a~~~--~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
.|++.++.-. |...+...-.++.. .+....+......+. +-.++++..-.|++++|++.++++.+.
T Consensus 263 IN~AtLL~~~-g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 263 INAATLLMLA-GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHc-CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445444443 44333332222222 222222222222222 234566677889999999999998865
No 274
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.82 E-value=8.3 Score=36.00 Aligned_cols=187 Identities=13% Similarity=0.070 Sum_probs=101.6
Q ss_pred HHHHcCChH-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh---ccCCHHHHHHHH
Q psy9376 63 LHMKSGTKH-DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET---DCVDQEKAVEHY 137 (320)
Q Consensus 63 ~~~~~~~~~-~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~---~l~~~~~Ai~~y 137 (320)
+..+++++. -.+....++-.+|+.. +|+.-++..+..-.+ |... ......+....|-++.+ . |+.++|+..+
T Consensus 129 i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~-gdre~Al~il 205 (374)
T PF13281_consen 129 IRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKP-GDREKALQIL 205 (374)
T ss_pred HHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 334566544 2344455666778887 888777776655444 1111 22233456677777776 7 9999999999
Q ss_pred HHHHhHhhccCCchHHHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh
Q psy9376 138 EQAATYFKGEESNSSANKCLLKVAHHAAL---------LQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI 208 (320)
Q Consensus 138 ~kA~~~~~~~~~~~~a~~~~~~la~~~~~---------~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 208 (320)
..++.--.. ...+++.-+|.+|-. ....++|+..|.++-...++ .|+..+. +.+..+..
T Consensus 206 ~~~l~~~~~-----~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~----~Y~GIN~---AtLL~~~g 273 (374)
T PF13281_consen 206 LPVLESDEN-----PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD----YYSGINA---ATLLMLAG 273 (374)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc----ccchHHH---HHHHHHcC
Confidence 887543222 235688888888742 22478999999998765421 1222221 12222221
Q ss_pred ----hhHHHHHHH---HHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 209 ----DVINAHNAI---DRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 209 ----d~~~~~~A~---~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
...+.++-. ..+.--...-....+|+-..-++++.-. .+++++|++.++++.++.|
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL--~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL--AGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhhcCC
Confidence 111222211 1221111222334555555444443322 4678888888888776543
No 275
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.73 E-value=2.2 Score=38.17 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEI-YETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL 166 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~-y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~ 166 (320)
..+.|...|.+|. +.+. ..-.+|...|.+ |... ++.+.|...|++++..|+.. ...+....+.+..
T Consensus 16 g~~~aR~vF~~a~----~~~~--~~~~vy~~~A~~E~~~~-~d~~~A~~Ife~glk~f~~~------~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 16 GIEAARKVFKRAR----KDKR--CTYHVYVAYALMEYYCN-KDPKRARKIFERGLKKFPSD------PDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHH----CCCC--S-THHHHHHHHHHHHTC-S-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH----cCCC--CCHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH
Confidence 4677888888885 2221 112468888888 4434 77777999999999999885 4677777888999
Q ss_pred ccCHHHHHHHHHHHHHh
Q psy9376 167 LQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 167 ~g~y~~Ai~~y~~~~~~ 183 (320)
.|+.+.|..+|+++...
T Consensus 83 ~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 83 LNDINNARALFERAISS 99 (280)
T ss_dssp TT-HHHHHHHHHHHCCT
T ss_pred hCcHHHHHHHHHHHHHh
Confidence 99999999999999865
No 276
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=92.66 E-value=4.5 Score=43.87 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-----C-----------------------
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-----D----------------------- 88 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-----~----------------------- 88 (320)
....|..+...|.+..|+..|..|+++.++.+|..+.|.+++.++.|..-. +
T Consensus 245 ~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s~~ 324 (1185)
T PF08626_consen 245 QKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSSPR 324 (1185)
T ss_pred hhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccCcc
Confidence 344577788888888888888888888888888888888888775442110 0
Q ss_pred -----------------------------HHHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHhccC----
Q psy9376 89 -----------------------------NEAAIDCLSKAIVIYTDMG-------RFTMAAKHHQTIAEIYETDCV---- 128 (320)
Q Consensus 89 -----------------------------~~eA~~~~~kA~~l~~~~~-------~~~~aa~~~~~la~~y~~~l~---- 128 (320)
+..-.+.+++++.+|.... -.---..+..+++.+.... .
T Consensus 325 ~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~-~~~~~ 403 (1185)
T PF08626_consen 325 NSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ-HLSDN 403 (1185)
T ss_pred cCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh-hcccc
Confidence 1112234444444444332 1112234556666665554 4
Q ss_pred ----------------CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 129 ----------------DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 129 ----------------~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
.-.++.+...++..+--..=........|..++.+|..+|-..++.-+.+.+....
T Consensus 404 l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 404 LDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 56778888888887655433456678899999999999998888877777776543
No 277
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.24 E-value=0.28 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
.++..+|.++...|++++|+..|+++....
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 367889999999999999999999887643
No 278
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=92.22 E-value=8.9 Score=36.45 Aligned_cols=108 Identities=13% Similarity=-0.012 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CH------HHHHHHHHHHHHHHHHc
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DN------EAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~------~eA~~~~~kA~~l~~~~ 106 (320)
....+.|......|||+.|...|.-+..=+..-+...-.|.+.+-+|.+.... .. ++.-.+++.|+..|...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 34566788999999999999999998876644333444555666666665554 21 36667888888888772
Q ss_pred -----CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 107 -----GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 107 -----~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
..+.-+.++....++++... +.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~-~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSR-GGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhc-CccHHHHHHHHHHHHH
Confidence 23346677788888888876 8888887777666654
No 279
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.20 E-value=0.27 Score=29.65 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
|.++..+|.+-... ++|++|++-|++++++.+.
T Consensus 1 Adv~~~Lgeisle~-e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 1 ADVYDLLGEISLEN-ENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred CcHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 35789999998887 9999999999999998765
No 280
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.98 E-value=8.4 Score=34.11 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~ 126 (320)
+++|++|++.....+...-+.+....+++.-..+..+|.+. +...... ...++..++...
T Consensus 3 ~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-------------------~~~~~~~-~~~rl~~l~~~~ 62 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-------------------EDPVDEE-SIARLIELISLF 62 (260)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-------------------T---SHH-HHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-------------------CCCCCHH-HHHHHHHHHHhC
Confidence 57788888887777777766666555554444444555443 2211111 123444444432
Q ss_pred cCCH-HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 127 CVDQ-EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 127 l~~~-~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
+.- .+-.....+|+..-+..+.+..-.+....+|..+.+.|++.+|..+|-..
T Consensus 63 -~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 63 -PPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred -CCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 211 12344555566655444455566788899999999999999998887644
No 281
>KOG1464|consensus
Probab=91.68 E-value=1.9 Score=38.13 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
-|+.|---.+|+.-|.. ..++++|+..|++.+++-..-|. +--.++.++..++... ++++-.+.|.+.+.....
T Consensus 23 EpdVDlENQYYnsK~l~---e~~p~~Al~sF~kVlelEgEKge--WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLK---EDEPKEALSSFQKVLELEGEKGE--WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred CCCcchHhhhhcccccc---ccCHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 35666655666554433 35889999999999998654443 4456677777777776 899999999888877653
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 106 ~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
.=...-.-.+...+-...... .+.+---+.|+-.++..++..+.+..-.+-.++|.+|...|+|.+--++..+....
T Consensus 98 AVTrNySEKsIN~IlDyiStS-~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTS-KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HHhccccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 211100111222222222232 45556667788888888777766666667788999999999998887777766543
No 282
>KOG2041|consensus
Probab=91.55 E-value=14 Score=37.06 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
..+-.+|+.+...|--++|++.|-+-
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhc
Confidence 45666788888888888888887754
No 283
>KOG4507|consensus
Probab=91.41 E-value=0.39 Score=46.62 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=79.2
Q ss_pred HHHHhcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHH
Q psy9376 81 ANCFKKT--DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLL 158 (320)
Q Consensus 81 a~~y~~~--~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~ 158 (320)
+-.|... ++..|+.|+..|...-|..... .+.++|++.... |-...|-..+.+++.+.-.+. -.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v-----~~v~la~~~~~~-~~~~da~~~l~q~l~~~~sep------l~~~ 680 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDV-----PLVNLANLLIHY-GLHLDATKLLLQALAINSSEP------LTFL 680 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcc-----cHHHHHHHHHHh-hhhccHHHHHHHHHhhcccCc------hHHH
Confidence 3444444 8999999999999887766553 588999988887 888999999999999874432 3667
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 159 KVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 159 ~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
.+|..+..+.+.++|++.++.+.+..++.+..
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcCCCChhh
Confidence 88999999999999999999999877666543
No 284
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.29 E-value=2.1 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
.+...|.-..+. |+|++|+.+|..|++++..
T Consensus 8 ~~a~~Ave~D~~-g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 8 QFARLAVQRDQE-GRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHH
Confidence 344455555666 9999999999999998755
No 285
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.21 E-value=0.21 Score=42.87 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
++.+.|.+.|.+|+++.++. ...+.++|....+.|+.+.|...|+++....+..
T Consensus 9 ~D~~aaaely~qal~lap~w------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 9 GDAEAAAELYNQALELAPEW------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred CChHHHHHHHHHHhhcCchh------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 89999999999999998773 5678899999999999999999999999876654
No 286
>KOG4322|consensus
Probab=91.21 E-value=14 Score=34.99 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=83.3
Q ss_pred hccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q psy9376 21 FITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKA 99 (320)
Q Consensus 21 ~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA 99 (320)
.+.|+| +++...++..-+-+.++....++..|.....+..--..+..+...-+......+.++.++ ....+..+.-++
T Consensus 261 l~~~~g-~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~ 339 (482)
T KOG4322|consen 261 LNSWFG-GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMF 339 (482)
T ss_pred HHHhhc-chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Confidence 344443 688888888777888888889999998888887654444445555666666667777766 556666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHh
Q psy9376 100 IVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144 (320)
Q Consensus 100 ~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~ 144 (320)
+....+.......+..-..++...-.. |.+++|......++...
T Consensus 340 ~~~~sey~ldyl~a~~~L~LAl~~L~L-G~pk~Al~lLh~a~h~I 383 (482)
T KOG4322|consen 340 EFKRSEYSLDYLEANENLDLALEHLAL-GSPKAALPLLHTAVHLI 383 (482)
T ss_pred HHHHHHhccchhhhhchHHHHHHHHHc-CChHHHHHHHHhhhhHH
Confidence 666665555555566666666666654 77777777777776443
No 287
>KOG0686|consensus
Probab=90.82 E-value=14 Score=34.60 Aligned_cols=173 Identities=12% Similarity=0.169 Sum_probs=107.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHH
Q psy9376 96 LSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQ 175 (320)
Q Consensus 96 ~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~ 175 (320)
++.=++-+..++-.+..-+.+..+|.-|..- |+.+.|+.+|-++-++....+ .....+.++-.+-+..|+|..-..
T Consensus 133 L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~c-G~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~s 208 (466)
T KOG0686|consen 133 LDNELKSYKDNLIKESIRRALEDLGDHYLDC-GQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLS 208 (466)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHh-ccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhh
Confidence 3333445566666666778899999999987 999999999999888776643 357788889999999999988888
Q ss_pred HHHHHHHhh-hhhhhh-hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCC---ccC---cHHHHHHHHHHHHHHhcC
Q psy9376 176 IYEEVGRTS-LDSSLL-KYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPA---FQD---SREYKLLRILIEHIEEQN 247 (320)
Q Consensus 176 ~y~~~~~~~-~~~~~~-~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~---f~~---s~e~~~l~~l~~a~~~~d 247 (320)
+-.++.... ...++. ...++-. --+++.+|. ...+..|..++...... |+. ..+-.+-+.++ |+...|
T Consensus 209 y~~~A~st~~~~~~~~q~v~~kl~-C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc-ALAtfd 284 (466)
T KOG0686|consen 209 YISKAESTPDANENLAQEVPAKLK-CAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC-ALATFD 284 (466)
T ss_pred HHHHHHhCchhhhhHHHhcCcchH-HHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH-hhccCC
Confidence 777776541 111111 0111111 112344433 45677777777654222 222 22222223333 455556
Q ss_pred HhHHHH-HH--HHHhhhcchhhhHHHHHHHHH
Q psy9376 248 VDGFTE-AV--KDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 248 ~~~~~~-Ai--~~ye~~~~ld~~~~~~l~~i~ 276 (320)
..++.. .| ..|....+++|-...+|.+..
T Consensus 285 r~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy 316 (466)
T KOG0686|consen 285 RQDLKLNVIKNESFKLFLELEPQLREILFKFY 316 (466)
T ss_pred HHHHHHHHHcchhhhhHHhcChHHHHHHHHHh
Confidence 666663 22 347778888888888775443
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.56 E-value=13 Score=33.77 Aligned_cols=126 Identities=17% Similarity=0.101 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH-HHHH---
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK-TDNEAAIDCLSKAIV-IYTD--- 105 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~-~~~~eA~~~~~kA~~-l~~~--- 105 (320)
++-...+.+-+.+.+..|.++-|..++.++.......+.. .....+.. +..... .+..+|+..++..+. ....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-~~~v~~e~-akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-LPRVFLEY-AKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-CcchHHHH-HHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3444555555677777888888887777776654222211 11122223 233333 377888888888877 2221
Q ss_pred ------------------------cCChHHHHHHHHHHHHHHHhcc------CCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 106 ------------------------MGRFTMAAKHHQTIAEIYETDC------VDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 106 ------------------------~~~~~~aa~~~~~la~~y~~~l------~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
.......++++..+|..... + +..++++..|.+|+.+.+.. ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~------~k 293 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSW------EK 293 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhH------HH
Confidence 12245667888888887665 3 78899999999999987764 34
Q ss_pred HHHHHHHHHH
Q psy9376 156 CLLKVAHHAA 165 (320)
Q Consensus 156 ~~~~la~~~~ 165 (320)
++...|..+.
T Consensus 294 ~~~~~a~~~~ 303 (352)
T PF02259_consen 294 AWHSWALFND 303 (352)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 289
>KOG0376|consensus
Probab=90.48 E-value=0.32 Score=46.04 Aligned_cols=96 Identities=17% Similarity=0.052 Sum_probs=76.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
-++-+...++|+.|+..|.||+++. ...+..+.+-+..+.+. ++..|+.=+.+|+++.|.... +|..
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K------~Y~r 77 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD------PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK------AYVR 77 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC------CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh------eeee
Confidence 3455555688899999999999884 24566677766777777 899999999999999876655 7888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
-|.+.... +.+.+|...|++...+.+...
T Consensus 78 rg~a~m~l-~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 78 RGTAVMAL-GEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred ccHHHHhH-HHHHHHHHHHHHhhhcCcCcH
Confidence 88888885 899999999999998887753
No 290
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=89.31 E-value=20 Score=34.04 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHhc----C--CHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTK-------HDAACNLLDAANCFKK----T--DNEAAID 94 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~-------~~aa~~~~~aa~~y~~----~--~~~eA~~ 94 (320)
+||+.|...|+..-.=|+..+-+...+-+.+-++-+.--.+.. ...-..+.++...|.. . .+.-|.+
T Consensus 222 ~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R 301 (414)
T PF12739_consen 222 RDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRCSLPYYALR 301 (414)
T ss_pred ccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccccccccchHH
Confidence 4888888888887666655444444444544444333322211 2444567777788888 2 3457899
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHhHh--hccCC-------chHHHHHHHHHHHHH
Q psy9376 95 CLSKAIVIYTDMGRFTMAAKHHQTIAEIYE-TDCVDQEKAVEHYEQAATYF--KGEES-------NSSANKCLLKVAHHA 164 (320)
Q Consensus 95 ~~~kA~~l~~~~~~~~~aa~~~~~la~~y~-~~l~~~~~Ai~~y~kA~~~~--~~~~~-------~~~a~~~~~~la~~~ 164 (320)
+..-..++....+.+..++..+.+...-+. ..++... +.-+++++.-.+ ..... .+-.+--+.-.|.-|
T Consensus 302 ~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~-~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~~vLAg~~~ 380 (414)
T PF12739_consen 302 CALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFG-SALLLEQAAYCYASLRSNRPSPGLTRFRKYAFHMVLAGHRY 380 (414)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHh-hHHHHHHHHHhhcccccCCCCccchhhHHHHHHHHHHHHHH
Confidence 999999999999998888888888876532 2123333 556788888877 33211 234455567778889
Q ss_pred HHccCHHHHHHHHHHHHHhh
Q psy9376 165 ALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 165 ~~~g~y~~Ai~~y~~~~~~~ 184 (320)
.+.|+...|+.+|.++....
T Consensus 381 ~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 381 SKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998654
No 291
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.20 E-value=1.1 Score=29.19 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
+++..+|..+.++|+|++|..+.+.+....|++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 47778888999999999999999999998887764
No 292
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.89 E-value=1 Score=27.14 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKS 67 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~ 67 (320)
+.|...|.+-...++|++|++-|.+|+++..++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 456677777777888888888888888887654
No 293
>KOG1538|consensus
Probab=88.44 E-value=5.7 Score=39.43 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+++...|+-+.+..++++|-+.|.++++.
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 45556666677777788888888877753
No 294
>KOG4507|consensus
Probab=88.37 E-value=0.52 Score=45.79 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=89.9
Q ss_pred HHHhhhhhhccccC--CCCHHHHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 13 AAALLRVVFITKVG--GNKIDEAIECY--------------TRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACN 76 (320)
Q Consensus 13 ~~k~~~~~~~~~~~--~~~~~~A~~~y--------------~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~ 76 (320)
+++.+|+.|..+-. -+..+-+..++ +.||.-.+..|+...|+.|.+.|+... |.+.-..
T Consensus 570 ~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~-----p~~~~v~ 644 (886)
T KOG4507|consen 570 DDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLA-----PLQQDVP 644 (886)
T ss_pred hHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccC-----hhhhccc
Confidence 56777777765521 23444444443 345667788899999999999998774 5555566
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
..+++++.... -...|-..+.+++.+.-.. .-.+..+|++|... .+.+.|++.+.+|++.-+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~se------pl~~~~~g~~~l~l-~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSE------PLTFLSLGNAYLAL-KNISGALEAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccC------chHHHhcchhHHHH-hhhHHHHHHHHHHHhcCCCC
Confidence 77888877665 4566889999999887222 23688899999985 99999999999999886653
No 295
>KOG2053|consensus
Probab=88.18 E-value=4.4 Score=41.46 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy9376 94 DCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKA 173 (320)
Q Consensus 94 ~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~A 173 (320)
.++.+.-.+.++.++. ..| ..--|-++.+. |+.++|..+++.-....+.+ ..++.-+-.+|.++|++++|
T Consensus 27 kal~~~~kllkk~Pn~-~~a--~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D------~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 27 KALAKLGKLLKKHPNA-LYA--KVLKALSLFRL-GKGDEALKLLEALYGLKGTD------DLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHHHHHHHHHHCCCc-HHH--HHHHHHHHHHh-cCchhHHHHHhhhccCCCCc------hHHHHHHHHHHHHHhhhhHH
Confidence 3333444444444442 222 33344455675 99999998776554444442 35777888999999999999
Q ss_pred HHHHHHHHHhhhhhhh
Q psy9376 174 IQIYEEVGRTSLDSSL 189 (320)
Q Consensus 174 i~~y~~~~~~~~~~~~ 189 (320)
..+|+++....|+...
T Consensus 97 ~~~Ye~~~~~~P~eel 112 (932)
T KOG2053|consen 97 VHLYERANQKYPSEEL 112 (932)
T ss_pred HHHHHHHHhhCCcHHH
Confidence 9999999988777543
No 296
>KOG2471|consensus
Probab=88.05 E-value=1.7 Score=41.56 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHH-----------------------HHHHHHcCCHHHHHHHHHHHHH-HHHHcCCh-----------H
Q psy9376 27 GNKIDEAIECYTRA-----------------------ANMFKMAKKWNNAGKAFVEAAN-LHMKSGTK-----------H 71 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------------------g~~~~~~g~~~~A~~~y~kA~~-~~~~~~~~-----------~ 71 (320)
.|+|..|+.++... |.++...|.|.-++.+|.+|+. ...++.+- .
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 46888888877544 4455667889999999999995 32222211 1
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy9376 72 DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYE 124 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~ 124 (320)
..-+.+++.|..|... +|-.|-+||.+|+..|..+.. .|..+|++..
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr------lWLRlAEcCi 380 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR------LWLRLAECCI 380 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH------HHHHHHHHHH
Confidence 1234567778888877 999999999999999998877 7888888643
No 297
>KOG0376|consensus
Probab=87.87 E-value=0.6 Score=44.24 Aligned_cols=89 Identities=17% Similarity=0.041 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
+++.|+..|-||+++.+.+-. .+.+-+..+.+. +++..|+.-..+|+++-+. ...+|..-|.....+
T Consensus 19 ~fd~avdlysKaI~ldpnca~------~~anRa~a~lK~-e~~~~Al~Da~kaie~dP~------~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAI------YFANRALAHLKV-ESFGGALHDALKAIELDPT------YIKAYVRRGTAVMAL 85 (476)
T ss_pred hHHHHHHHHHHHHhcCCccee------eechhhhhheee-chhhhHHHHHHhhhhcCch------hhheeeeccHHHHhH
Confidence 799999999999999986654 456666677776 8999999999999998766 367888889999999
Q ss_pred cCHHHHHHHHHHHHHhhhhhhh
Q psy9376 168 QNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 168 g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
+++.+|...|+......|+.+.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHH
Confidence 9999999999999888777654
No 298
>KOG2471|consensus
Probab=87.72 E-value=1.3 Score=42.25 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=76.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcC---ChH-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH-HHH--HcC-C----
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSG---TKH-DAACNLLDAANCFKKT-DNEAAIDCLSKAIV-IYT--DMG-R---- 108 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~---~~~-~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~-l~~--~~~-~---- 108 (320)
+.+...|+|.+|.......- +....| -+. .....++++|-++..+ .+.-++.+|.+|+. ... .+| +
T Consensus 248 q~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 44445567666666544332 111222 111 1334567888887777 88999999999995 322 223 1
Q ss_pred ----hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHH
Q psy9376 109 ----FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA 165 (320)
Q Consensus 109 ----~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~ 165 (320)
....-..+++.|..|-.. |++-.|.+||.+++..|..+. ..|.+++++.+
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~-grPl~AfqCf~~av~vfh~nP------rlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHS-GRPLLAFQCFQKAVHVFHRNP------RLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHhhhHHHHhc-CCcHHHHHHHHHHHHHHhcCc------HHHHHHHHHHH
Confidence 012235689999999996 999999999999999998864 46777777653
No 299
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.57 E-value=1.3 Score=46.23 Aligned_cols=104 Identities=8% Similarity=0.026 Sum_probs=73.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIA 120 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la 120 (320)
..|..-+.|+.|+..|.+...-++ .+.+--++...+|.+..+. .-..--+-+.+|+.-+........|.--|...|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFP---GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKA 559 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCC---CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHH
Confidence 345555677777777777666553 1222334566667665553 111111677888888887777777777888889
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
.+|+.. |++++=|.+|.-|+..|+....
T Consensus 560 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 560 LVYQRL-GEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHh-hhHHHHHHHHHHHHHhcCCCCc
Confidence 999997 9999999999999999988654
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.32 E-value=23 Score=32.22 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+...+.++...+.+.++. |.++-|...+.++.......... ...+...-+.++...|+..+|+...++....
T Consensus 142 ~~~~~~~~l~~a~~aRk~-g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKA-GNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hhHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667778899999999998 99999999998888765433221 2346667788899999999999998887763
No 301
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.65 E-value=1.2 Score=39.34 Aligned_cols=62 Identities=16% Similarity=0.036 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL 166 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~ 166 (320)
|..+|.+|+.+.|.+|. .+..+|.++... |+.=.|+=+|-|++-. ...- ..+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~------p~nQLAvl~~~~-~~~l~avy~y~Rsl~~--~~Pf----~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN------PYNQLAVLASYQ-GDDLDAVYYYIRSLAV--RIPF----PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH------HHHHHHHHHHHT-T-HHHHHHHHHHHHSS--SB------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC------cccchhhhhccc-cchHHHHHHHHHHHhc--CCCc----HHHHHHHHHHHHH
Confidence 68999999999999998 699999999998 9999999999999843 2111 3345556666555
No 302
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.36 E-value=2.2 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
.+.+.|.-..+. |++++|+++|.+|++.+..
T Consensus 7 ~~~~~Av~~D~~-g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 7 ELIKKAVEADEA-GNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHT-TSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 445555556666 8899999999888887644
No 303
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.30 E-value=32 Score=33.02 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=31.6
Q ss_pred HHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 138 EQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 138 ~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+.|.++.....+ ...|..||+.....|+.+-|.++|+++.+.
T Consensus 335 ~~A~~~a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 335 DIALEIAKELDD----PEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HHHHHHCCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred HHHHHHHHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 334444444443 458999999999999999999999998653
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.88 E-value=1.3 Score=23.97 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYE 178 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~ 178 (320)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998876
No 305
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.77 E-value=4.8 Score=42.19 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=69.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-----hhHHHHHHHHHHHHhCCCccCcHHHH
Q psy9376 160 VAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-----DVINAHNAIDRYKTIYPAFQDSREYK 234 (320)
Q Consensus 160 la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-----d~~~~~~A~~~y~~~~~~f~~s~e~~ 234 (320)
+.+.+...+.|+.|+..|+++....|+.+. ..+..|++|+..|-. |+....+|+++++.+...-..--||.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKE----GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL 556 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCccc----chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence 345566778899999999999988877553 345578888877642 56789999999999877655555654
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 235 LLRILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 235 ~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
-..-++ ...++|++-|++|.-+.+
T Consensus 557 ~~~~~~-----~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 557 GKALVY-----QRLGEYNEEIKSLLLALK 580 (932)
T ss_pred hHHHHH-----HHhhhHHHHHHHHHHHHH
Confidence 322222 246899999999998877
No 306
>KOG0687|consensus
Probab=85.73 E-value=28 Score=31.80 Aligned_cols=130 Identities=19% Similarity=0.103 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc-
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL- 167 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~- 167 (320)
.++-++-+.++++=..++.--.....++.+.|..|-+. |+.+.|.+++.+..+---..|......-+...+|-+|...
T Consensus 80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqi-gDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~ 158 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQI-GDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHD 158 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHH
Confidence 45556666677766666644567788999999999996 9999999999888877777777666777788888888543
Q ss_pred ---cCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccC
Q psy9376 168 ---QNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQD 229 (320)
Q Consensus 168 ---g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~ 229 (320)
...++|-.++++-+++...+.+-.|. |++.+ ..-+..+|-+-+.+..+.|.+
T Consensus 159 lV~~~iekak~liE~GgDWeRrNRlKvY~--------Gly~m--svR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 159 LVTESIEKAKSLIEEGGDWERRNRLKVYQ--------GLYCM--SVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHHHhCCChhhhhhHHHHH--------HHHHH--HHHhHHHHHHHHHHHcccccc
Confidence 46778888888887776555543221 22222 234566677777777788775
No 307
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.64 E-value=8.5 Score=27.32 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=45.9
Q ss_pred HHHHHHHHH-HHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 113 AKHHQTIAE-IYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 113 a~~~~~la~-~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
+.-...-|. .| .. .+.++|+..+.++++..++. ...-.++.-+..+|...|+|.+++++-..-
T Consensus 6 ak~~ie~GlkLY-~~-~~~~~Al~~W~~aL~k~~~~---~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 6 AKQQIEKGLKLY-HQ-NETQQALQKWRKALEKITDR---EDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHHHh-cc-chHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444453 44 44 78999999999999877663 345667778888899999999998765543
No 308
>KOG2581|consensus
Probab=85.16 E-value=34 Score=32.23 Aligned_cols=128 Identities=11% Similarity=0.020 Sum_probs=75.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSG-TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~-~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
...|...|+...-...+..-+.. ..++ +..+.+...+-+-.+|..- .++.|-..-.++. +|+..+..+.|++++-
T Consensus 176 ~l~~E~~~~l~~~rs~l~~~lrt-AtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY 252 (493)
T KOG2581|consen 176 YLSYELEGRLADIRSFLHALLRT-ATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYY 252 (493)
T ss_pred HHHHHhhcchHHHHHHHHHHHHH-hhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHH
Confidence 34555555543332222222222 2344 4444554444444555444 4566655554442 5666666688999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
+|.+..-+ ++|..|.+++.+|+...|....-...-.+...+..+-.-+|++.+
T Consensus 253 ~GrIkaiq-ldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPe 305 (493)
T KOG2581|consen 253 LGRIKAIQ-LDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPE 305 (493)
T ss_pred HhhHHHhh-cchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998 899999999999999888754333233333333344445676654
No 309
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.73 E-value=11 Score=26.41 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMK 66 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~ 66 (320)
+.++|+.+..+| .---..|+|++|+++|..|++.+..
T Consensus 2 ~l~kai~Lv~~A-~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 2 DLERAHFLVTQA-FDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred CHHHHHHHHHHH-HHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 457888888886 4445578999999999999998765
No 310
>KOG1308|consensus
Probab=84.49 E-value=0.44 Score=43.31 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=75.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 80 AANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 80 aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
+...+-...+++|++.+-.|+.+.+.+.. .+.+-+.++.+. +++..||.-+..|+++.++.. .-|.-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~------l~~kr~sv~lkl-~kp~~airD~d~A~ein~Dsa------~~ykf 187 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAI------LYAKRASVFLKL-KKPNAAIRDCDFAIEINPDSA------KGYKF 187 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhh------hcccccceeeec-cCCchhhhhhhhhhccCcccc------cccch
Confidence 34445555789999999999988776544 788999999995 999999999999999987752 33444
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 160 VAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 160 la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
-|.....+|++++|...+..+....-++..
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhccccHHH
Confidence 466667789999999999988876555443
No 311
>PRK10941 hypothetical protein; Provisional
Probab=84.35 E-value=7.8 Score=34.53 Aligned_cols=77 Identities=10% Similarity=-0.009 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
.+..-..+.+.++=.+|.+. ++++.|+.+-+..+.+.|+. ..-+..-|-+|.++|.+..|+.-++.....+|+
T Consensus 175 ~~~~il~Rml~nLK~~~~~~-~~~~~AL~~~e~ll~l~P~d------p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 175 DNIEVIRKLLDTLKAALMEE-KQMELALRASEALLQFDPED------PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34455677888999999998 99999999999999999885 345677899999999999999999999888887
Q ss_pred hhhh
Q psy9376 187 SSLL 190 (320)
Q Consensus 187 ~~~~ 190 (320)
.+..
T Consensus 248 dp~a 251 (269)
T PRK10941 248 DPIS 251 (269)
T ss_pred chhH
Confidence 7653
No 312
>KOG3824|consensus
Probab=84.25 E-value=1.4 Score=39.60 Aligned_cols=73 Identities=23% Similarity=0.190 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
...+|+-....|+..++ .|+.++|...|+.|+.+.+ ...+.+.+.|...... +.-+|-.||-+|+.+.|.+.
T Consensus 112 ~~kEA~~Al~~A~~~~~-~Gk~ekA~~lfeHAlalaP------~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRK-DGKLEKAMTLFEHALALAP------TNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hhHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHhcCC------CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 34455555555555543 5666666666666666532 1233455555444333 45556666666666665544
Q ss_pred C
Q psy9376 108 R 108 (320)
Q Consensus 108 ~ 108 (320)
.
T Consensus 185 e 185 (472)
T KOG3824|consen 185 E 185 (472)
T ss_pred H
Confidence 3
No 313
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.01 E-value=7.5 Score=27.33 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhHhhccCCchH
Q psy9376 128 VDQEKAVEHYEQAATYFKGEESNSS 152 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~~~~~~~~~ 152 (320)
|+|++|+++|.+|++.|-...++..
T Consensus 20 gny~eA~~lY~~ale~~~~ekn~~~ 44 (75)
T cd02680 20 GNAEEAIELYTEAVELCINTSNETM 44 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHhcChhh
Confidence 8999999999999999877554433
No 314
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=83.90 E-value=9.4 Score=26.94 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
-+..-|.-.... |++++|+.+|.++++.|..
T Consensus 8 ~l~~~Ave~D~~-g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 8 EVLKRAVELDQE-GRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 344444455665 8999999999999987755
No 315
>KOG2114|consensus
Probab=83.80 E-value=24 Score=36.11 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLH 64 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~ 64 (320)
+.-.+...+.|.-+...|++++|...|.+++...
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 3334445566777778899999999998887553
No 316
>KOG4814|consensus
Probab=83.74 E-value=50 Score=33.04 Aligned_cols=102 Identities=11% Similarity=0.103 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
++.|...|+ ..+|..+++.|..++.-+..-.....-+.....+..||... +.+.|+++++.|-+..|++-- +
T Consensus 358 Wn~A~~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l------~ 430 (872)
T KOG4814|consen 358 WNTAKKLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL------C 430 (872)
T ss_pred HHhhHHHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH------H
Confidence 345555555 57999999999999987764433334488888899999998 899999999999888766532 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
...+-.+.-.. +.-++|+.+.......+.+
T Consensus 431 q~~~~~~~~~E-~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 431 QLLMLQSFLAE-DKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHHh-cchHHHHHHHHHHHhhhcc
Confidence 22223333334 7889999998887776655
No 317
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.56 E-value=10 Score=26.61 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
|..+...|.-+... |++++|+.+|+++++.+..
T Consensus 6 A~~~a~~AVe~D~~-gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 6 ARKYAINAVKAEKE-GNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 33445555555666 8888888888888776544
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.52 E-value=1.9 Score=23.34 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQ 139 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~k 139 (320)
.+...+|.++... |++++|...+++
T Consensus 2 ~a~~~la~~~~~~-G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQ-GDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHhC
Confidence 3678899999997 999999988753
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.31 E-value=5.1 Score=33.88 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHH
Q psy9376 73 AACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAV 134 (320)
Q Consensus 73 aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai 134 (320)
.++....+|..|.+.|+++++..+.++++++....+++ ...+..|+.+|... |++++|-
T Consensus 140 t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~-~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKL-KNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHh-cchhhhh
Confidence 35566677788888899999999999999998764443 34899999999997 9999874
No 320
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=81.72 E-value=14 Score=25.90 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
..++|+++..+| .-.-..|++++|+.+|..+++.+.
T Consensus 2 ~l~~Ai~lv~~A-v~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 2 SLEKAIALVVQA-VKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred cHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHH
Confidence 356788888876 556678999999999999988864
No 321
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.56 E-value=14 Score=25.74 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
..+++|.++..+| ...-..|++++|+.+|.++++.+.
T Consensus 3 ~~~~~A~~li~~A-v~~d~~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 3 DYLSKAKELISKA-LKADEAGDYEEALELYKKAIEYLL 39 (77)
T ss_pred cHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3467777777665 666668999999999999888764
No 322
>KOG1839|consensus
Probab=81.26 E-value=37 Score=36.56 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcC-ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM-KSG-TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM- 106 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~-~~~-~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~- 106 (320)
.+|-+.++ .|..--..|.+.++.+ .-+++.++. ..| .....+.+|..++..+-.. +.++|+..-.+|+-+....
T Consensus 930 ~~a~~~~e-~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen 930 SEAKDSPE-QGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred chhhhhhh-hhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc
Confidence 44444443 3555556778888887 666666664 222 2346788888888888777 9999999999999887543
Q ss_pred C-ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc--cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 107 G-RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG--EESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 107 ~-~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~--~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
| +.......+.+++...... ++...|...+.++..+..- ...+...+....+++.++...++++.|+.+.+.+..
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~-~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAV-KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhc-cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3 4566777899999877776 8889999999888765322 113445567788999999999999999999999876
No 323
>KOG3364|consensus
Probab=80.01 E-value=28 Score=27.61 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhc--cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 114 KHHQTIAEIYETD--CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 114 ~~~~~la~~y~~~--l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.+.++++.++-.. ..+..+.|.+++..+. ...+....+++.-|+--+.++|+|++++.+.+...+..++++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3566777665543 1345778888887776 2233445678889999999999999999999999988777654
No 324
>KOG0687|consensus
Probab=79.55 E-value=50 Score=30.25 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccC
Q psy9376 50 WNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCV 128 (320)
Q Consensus 50 ~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~ 128 (320)
.++-++-+.+..+=..++.-..+..+++.+.+.-|.+. |.+.|.+.+.+..+-....|..-+.--+...+|-.|...
T Consensus 80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~-- 157 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDH-- 157 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccH--
Confidence 34444444444444333322345677888888888887 889999999988888888888777777888999887664
Q ss_pred CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 129 DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 129 ~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
+---+..++|-.++++.|+|......-.--|-......++.+|..+|-.......+..++
T Consensus 158 --~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~ 217 (393)
T KOG0687|consen 158 --DLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELM 217 (393)
T ss_pred --HHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecc
Confidence 333445567777888888877655444444444456678889988888877655444443
No 325
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=79.55 E-value=25 Score=26.74 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
.+++||.++..+.|.. |..++.+|.-+... .-|++++.--++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~------A~~L~~la~~l~s~-~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDS------AHSLFELASQLGSV-KYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhH------HHHHHHHHHHhhhH-HHHHHHHHHHHHHhcc
Confidence 4777777777776654 77899999876665 5667777666666553
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.46 E-value=45 Score=29.66 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=77.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHH---cCC-----hHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTK---HDAACNLLDAANCFK-KT-DNEAAIDCLSKAIVIYTD---MGR-----FTMAA 113 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~---~~aa~~~~~aa~~y~-~~-~~~eA~~~~~kA~~l~~~---~~~-----~~~aa 113 (320)
.||++.|..+|.|+-.+.. ..+| ..-+..+++.|.... +. ++++|+..+++|.++... ... ...-.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4566666666666655543 2222 234566667776544 45 899999999999999743 221 13456
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc-cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG-EESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~-~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
.++..++.+|... +.++-... -.++++.... .+++ ..++.---.++.+.++.+.+.+.+.++...
T Consensus 85 ~iL~~La~~~l~~-~~~~~~~k-a~~~l~~l~~e~~~~---~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEW-DTYESVEK-ALNALRLLESEYGNK---PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcC-CChHHHHH-HHHHHHHHHHhCCCC---cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 7788999998885 66543322 2223332222 2222 223323334444478888888888888765
No 327
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=79.23 E-value=7.5 Score=26.54 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
+.|+.+..+| ..+-..|++++|+++|.++++...
T Consensus 3 ~~A~~~~~~A-v~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 3 DKAIELIKKA-VEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHH-HHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4566666664 445557888888888888877753
No 328
>KOG1839|consensus
Probab=79.21 E-value=25 Score=37.77 Aligned_cols=152 Identities=12% Similarity=0.029 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH-
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKS-G-TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYT- 104 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~-~-~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~- 104 (320)
.+.+-..+|...+.++...|++++|+..-.++.-+..+. | +.......|.+++...... +...|+..+.++..+.-
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 345566667777788888999999999988888877643 2 5567778888887555554 67778888888877642
Q ss_pred HcC-ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 105 DMG-RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE--SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 105 ~~~-~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~--~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
..| +-...+....+++.++... ++++.|+.+.+.|..+-.... ..-..+.++..++++....|++..|+...+...
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v-~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGV-EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhH-HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 222 2445566788999998886 999999999999998655532 334456777888888888888888877766544
No 329
>KOG3824|consensus
Probab=79.13 E-value=5.9 Score=35.79 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
++...+..+.. |+.++|..+|+-|+.+.+.. .+++...|.......+.-+|-.+|-++...++.+.
T Consensus 119 Al~~A~~~~~~--Gk~ekA~~lfeHAlalaP~~------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 119 ALKAAGRSRKD--GKLEKAMTLFEHALALAPTN------PQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHhc--cchHHHHHHHHHHHhcCCCC------HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 34444555443 99999999999999998885 57899999999888999999999999987766654
No 330
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.62 E-value=8.9 Score=27.92 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 93 IDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
+..++++++-.|++- ...+.+|..+... |++++|++.+...+...+..++ ...-..+-.++..+|.-+.
T Consensus 8 ~~al~~~~a~~P~D~------~ar~~lA~~~~~~-g~~e~Al~~Ll~~v~~dr~~~~----~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 8 IAALEAALAANPDDL------DARYALADALLAA-GDYEEALDQLLELVRRDRDYED----DAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHSTT-H------HHHHHHHHHHHHT-T-HHHHHHHHHHHHCC-TTCCC----CHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHcCCCCH------HHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCccccc----cHHHHHHHHHHHHcCCCCh
Confidence 445555555444332 3678888888887 9999999888888776655433 2233445555555555444
Q ss_pred HHHHHHH
Q psy9376 173 AIQIYEE 179 (320)
Q Consensus 173 Ai~~y~~ 179 (320)
-..-|++
T Consensus 77 lv~~~RR 83 (90)
T PF14561_consen 77 LVSEYRR 83 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 331
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=78.55 E-value=7 Score=27.30 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+..-|.-+... |++++|+.+|.+|++.+..
T Consensus 11 li~~Av~~d~~-g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 11 LISKALKADEA-GDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 44444555666 8889999999888887654
No 332
>KOG3024|consensus
Probab=77.95 E-value=24 Score=31.50 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=84.5
Q ss_pred HhhhhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHH
Q psy9376 15 ALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAA 92 (320)
Q Consensus 15 k~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA 92 (320)
-+.++.++..++...++.|+++....+.++-..++...|++.-...++++.+..... .-....+++.+.... .-++=
T Consensus 27 qm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad-~~~~~anl~~ll~e~~~~eper 105 (312)
T KOG3024|consen 27 QMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVAD-SLLKVANLAELLGEADPSEPER 105 (312)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhH-hHHHHHHHHHHHhhcCCCccHH
Confidence 345665555556679999999999999999999999999999888888887622211 112224556666665 33445
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy9376 93 IDCLSKAIVIYTDM-GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQ 139 (320)
Q Consensus 93 ~~~~~kA~~l~~~~-~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~k 139 (320)
..+.+++++-..+. +-..+-+..+.-+|..+-.. +++.+|..+|-.
T Consensus 106 ~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e-~~~~~a~~HFll 152 (312)
T KOG3024|consen 106 KTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTE-DNVEEARRHFLL 152 (312)
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-ccHHHHHhHhhh
Confidence 56667777766653 22233345788889887776 888999888743
No 333
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=77.87 E-value=63 Score=30.47 Aligned_cols=143 Identities=13% Similarity=-0.033 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHH---------HHH-----HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHH
Q psy9376 27 GNKIDEAIECYTRA---------ANM-----FKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAA 92 (320)
Q Consensus 27 ~~~~~~A~~~y~~a---------g~~-----~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA 92 (320)
-|+++.|-.-|+-- |.. -+..|+.+.|..+-+++....+.+ .+++.+... .-....+++.|
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l---~WA~~AtLe--~r~~~gdWd~A 207 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL---PWAARATLE--ARCAAGDWDGA 207 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC---chHHHHHHH--HHHhcCChHHH
Confidence 47888888777643 321 245788888888888887765433 344444433 44455688888
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC
Q psy9376 93 IDCLSKAIVIYTDMG---RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~---~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~ 169 (320)
+++.........-.. +...++-.--+.+.. -. -++..|.+.-.++.++-++. .-.-...+..+.+.|+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ld--adp~~Ar~~A~~a~KL~pdl------vPaav~AAralf~d~~ 278 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LD--ADPASARDDALEANKLAPDL------VPAAVVAARALFRDGN 278 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hc--CChHHHHHHHHHHhhcCCcc------chHHHHHHHHHHhccc
Confidence 888766555433222 223333222222222 22 36777777777777776653 2233445667777777
Q ss_pred HHHHHHHHHHHHHh
Q psy9376 170 YNKAIQIYEEVGRT 183 (320)
Q Consensus 170 y~~Ai~~y~~~~~~ 183 (320)
..++-.+++.+=+.
T Consensus 279 ~rKg~~ilE~aWK~ 292 (531)
T COG3898 279 LRKGSKILETAWKA 292 (531)
T ss_pred hhhhhhHHHHHHhc
Confidence 77777777766543
No 334
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=77.76 E-value=21 Score=24.87 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=21.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+..-|.-.... |++++|+.+|.+|++.+-.
T Consensus 9 l~~~Av~~D~~-g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 9 LVKKAIEEDNA-GNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 33344444555 9999999999999988754
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.26 E-value=23 Score=25.14 Aligned_cols=66 Identities=8% Similarity=-0.056 Sum_probs=45.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
|..+....+.++|+..+.++++-..+ +.+.-.++--+..+|... ++.+.+.+..+=+++..+.+++
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33344678888999999998876543 333444455555666666 8888999888888888777664
No 336
>KOG1920|consensus
Probab=76.89 E-value=1.1e+02 Score=32.86 Aligned_cols=81 Identities=12% Similarity=-0.014 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH------hHhhccCCch-HHHHHHHHHHHHHHH
Q psy9376 94 DCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAA------TYFKGEESNS-SANKCLLKVAHHAAL 166 (320)
Q Consensus 94 ~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~------~~~~~~~~~~-~a~~~~~~la~~~~~ 166 (320)
.+|.--.+...++.. +.++|..|+.- |+.++|+.+|+.+. .+........ .....-..++.-+..
T Consensus 940 ~i~~~ya~hL~~~~~-------~~~Aal~Ye~~-GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 940 VIYEAYADHLREELM-------SDEAALMYERC-GKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHHHhcc-------ccHHHHHHHHh-ccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 334333444455555 55556667775 78888888775543 3333211111 111112556666778
Q ss_pred ccCHHHHHHHHHHHHH
Q psy9376 167 LQNYNKAIQIYEEVGR 182 (320)
Q Consensus 167 ~g~y~~Ai~~y~~~~~ 182 (320)
++++-+|.++..+...
T Consensus 1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cccchhHHHHHHHHhc
Confidence 8888888877776653
No 337
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=76.62 E-value=4.2 Score=22.19 Aligned_cols=27 Identities=7% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 466788889999999999999998764
No 338
>KOG3807|consensus
Probab=76.52 E-value=63 Score=29.76 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc------
Q psy9376 77 LLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN------ 150 (320)
Q Consensus 77 ~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~------ 150 (320)
|..+-..+++.++++-|.....|+++.++... +|..+++- +. .-..+|...+.+|+..-+..-+.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~------AyvLLAEE--Ea-~Ti~~AE~l~k~ALka~e~~yr~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECAT------AYVLLAEE--EA-TTIVDAERLFKQALKAGETIYRQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhh------HHHhhhhh--hh-hhHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 44455566666788888888888888765543 67777662 22 34566777777666432221110
Q ss_pred -------------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHH
Q psy9376 151 -------------SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAI 217 (320)
Q Consensus 151 -------------~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~ 217 (320)
.-....-..++.+-.++|+..+|++.++...+..+-... ++..+-+.-+.+- .+...+.+.-+
T Consensus 259 ~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~--lniheNLiEalLE--~QAYADvqavL 334 (556)
T KOG3807|consen 259 QSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTM--LNIHENLLEALLE--LQAYADVQAVL 334 (556)
T ss_pred hccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHH--HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 111223467888889999999999999988765432111 1111111111110 01223344445
Q ss_pred HHHHHhCCCccCcHHHHHHHHHHH--HH----------HhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhc
Q psy9376 218 DRYKTIYPAFQDSREYKLLRILIE--HI----------EEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVG 280 (320)
Q Consensus 218 ~~y~~~~~~f~~s~e~~~l~~l~~--a~----------~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~ 280 (320)
.+|.++ ..|.|-.--....|+. |+ .-|-...-..|++..-.+.+.+|..++-|+..|..|-
T Consensus 335 akYDdi--slPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~kslIl 407 (556)
T KOG3807|consen 335 AKYDDI--SLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLIL 407 (556)
T ss_pred Hhhccc--cCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHhccC
Confidence 555432 1222211100011111 01 0111223445777777888899999999999886554
No 339
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=76.51 E-value=7.5 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=20.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+...|.-.... |++++|+.+|.+|++.+-.
T Consensus 9 l~~~Av~~D~~-g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 9 LIKQAVKEDED-GNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 44445555665 8888888888888877644
No 340
>PF12854 PPR_1: PPR repeat
Probab=75.64 E-value=6.2 Score=22.80 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
.-+|..+...+.+.|+.++|.+++++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 357888999999999999999999863
No 341
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.60 E-value=9.6 Score=26.89 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
-..|+++..+| .-.-..|++++|+.+|.++++.+.
T Consensus 3 ~~~a~~l~~~A-ve~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 3 ELAAKEVLKRA-VELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred hHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHH
Confidence 35677777665 555667888888888888887764
No 342
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.53 E-value=6.7 Score=34.54 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 133 AVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 133 Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
|..+|.+|+.+.|..| ..+..+|.+....|+.-.|+-+|-++..
T Consensus 1 A~~~Y~~A~~l~P~~G------~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG------NPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH-TTBS------HHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhCCCCC------CcccchhhhhccccchHHHHHHHHHHHh
Confidence 6889999999999986 5888999999999999999988888863
No 343
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.40 E-value=50 Score=31.36 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCC--------hHHH-HHHHHHHHHHHhcC-CHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMK---SGT--------KHDA-ACNLLDAANCFKKT-DNEAAI 93 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~---~~~--------~~~a-a~~~~~aa~~y~~~-~~~eA~ 93 (320)
.|..|+=+..--+-+.....+|+|..|+--|.-|+++..+ ++. -... ...-.++..||..+ +++-|+
T Consensus 169 ~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL 248 (569)
T PF15015_consen 169 LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL 248 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 4666665555444455555578899999889988888753 222 1111 12234577899998 899999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 94 DCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 94 ~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
..-.+.+.+.|..-. -+..-|.+++.. .+|.+|....--|.-+|--.|
T Consensus 249 nh~hrsI~lnP~~fr------nHLrqAavfR~L-eRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 249 NHSHRSINLNPSYFR------NHLRQAAVFRRL-ERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred HHHhhhhhcCcchhh------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 999999888776543 244556677774 888888887776666665554
No 344
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=75.11 E-value=8.1 Score=27.46 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
.|....+.|..++.. |+.++|+.+|++++.....
T Consensus 7 ~A~~~I~kaL~~dE~-g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 7 QAFEEISKALRADEW-GDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHHHHH
Confidence 344566667777776 8999999999999887655
No 345
>KOG3783|consensus
Probab=74.70 E-value=54 Score=32.01 Aligned_cols=87 Identities=14% Similarity=0.008 Sum_probs=65.0
Q ss_pred HhhhhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHhcC-C-HHH
Q psy9376 15 ALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM-KSGTKHDAACNLLDAANCFKKT-D-NEA 91 (320)
Q Consensus 15 k~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~-~~~~~~~aa~~~~~aa~~y~~~-~-~~e 91 (320)
|+...+-..++. |.|+..-.+.--|.+.+.+|+...|-.+|..+++-.. +..++.-..-+++++|..|... . ..+
T Consensus 432 k~~~~~~~~~~~--d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e 509 (546)
T KOG3783|consen 432 KMRAELENPKID--DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKE 509 (546)
T ss_pred HHHHHHhccCCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHH
Confidence 444455555543 7777777777789999999999999999999986543 3445555667778888888877 4 889
Q ss_pred HHHHHHHHHHHH
Q psy9376 92 AIDCLSKAIVIY 103 (320)
Q Consensus 92 A~~~~~kA~~l~ 103 (320)
+..++.+|-+..
T Consensus 510 ~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 510 ARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHhhc
Confidence 999999996554
No 346
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=74.30 E-value=6.9 Score=21.77 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+|..+-..|.+.|++++|.++|.+....
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3566778899999999999999998754
No 347
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=74.22 E-value=4.4 Score=35.08 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+.+.|.+.|.+|+++.|+.-. .|+.+|..-++. |+.+.|...|++.+++-+..
T Consensus 10 D~~aaaely~qal~lap~w~~------gwfR~g~~~eka-g~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 10 DAEAAAELYNQALELAPEWAA------GWFRLGEYTEKA-GEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ChHHHHHHHHHHhhcCchhhh------hhhhcchhhhhc-ccHHHHHHHHHHHHcCCccc
Confidence 778888999999998877654 699999999998 99999999999999987775
No 348
>PF13041 PPR_2: PPR repeat family
Probab=73.93 E-value=7.4 Score=24.43 Aligned_cols=34 Identities=6% Similarity=0.230 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
-+|..+-..+.+.|++++|.++|++..+.+....
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 4677788899999999999999999997755433
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.44 E-value=75 Score=30.55 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQA 140 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA 140 (320)
.|..||.....+ |+.+-|.++|+++
T Consensus 349 ~W~~Lg~~AL~~-g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQ-GNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHT-TBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHhh
Confidence 455566555555 5666666665554
No 350
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=72.91 E-value=12 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
.+.|+.+..+| .-.-..|++++|+.+|.++++.+.
T Consensus 3 ~~~A~~l~~~A-v~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 3 LQKAIELVKKA-IEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35677777775 556678888888888888888764
No 351
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=72.19 E-value=1.3e+02 Score=31.26 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHhcC-C-HHHHHH-HHHHHHHHHH
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM-KSGTKHDAACNLLDAANCFKKT-D-NEAAID-CLSKAIVIYT 104 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~-~~~~~~~aa~~~~~aa~~y~~~-~-~~eA~~-~~~kA~~l~~ 104 (320)
..+.|..+|-++|..--..|--+-|-+.|.+|..+|+ +..+....-.+...+...+.+. . .++--+ ...|+.....
T Consensus 587 ~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yas 666 (762)
T PF03635_consen 587 SSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYAS 666 (762)
T ss_dssp --HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 4688999999988887777766678899999999998 5666666667777776666665 1 122222 2223333333
Q ss_pred HcCChHHHHHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhHhhccC
Q psy9376 105 DMGRFTMAAKHHQTIAEIYETDC---------VDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 105 ~~~~~~~aa~~~~~la~~y~~~l---------~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
+.=...+..++...-++.+-..- .+....++|++||+.+...--
T Consensus 667 KLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m 719 (762)
T PF03635_consen 667 KLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM 719 (762)
T ss_dssp C-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence 33344455555555555443320 256677778888877765543
No 352
>KOG1497|consensus
Probab=72.12 E-value=80 Score=28.91 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc--cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG--EESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~--~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
...+.+-..+|.+|++. +++..|...+. ++..... ..+.......+.++|++|.+.++..+|..+..++.
T Consensus 100 Eqv~~irl~LAsiYE~E-q~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKE-QNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHHHHHHh-hhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45667788999999998 89988877653 2322211 11233456678999999999999999998888875
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.65 E-value=7.9 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
.++|..|...|+++.|.+..+++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4689999999999999999999985
No 354
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.17 E-value=12 Score=26.29 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=16.0
Q ss_pred HhccCCHHHHHHHHHHHHhHhhc
Q psy9376 124 ETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 124 ~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
... |+|++|..+|.++++.|..
T Consensus 17 d~~-~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 17 EEE-GDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHH-hhHHHHHHHHHHHHHHHHH
Confidence 444 7788888888888877654
No 355
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.47 E-value=18 Score=21.36 Aligned_cols=24 Identities=21% Similarity=0.348 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYE 178 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~ 178 (320)
+.+..+|-.+...|+|++|+++|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356778889999999999999955
No 356
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.38 E-value=24 Score=22.92 Aligned_cols=32 Identities=13% Similarity=-0.197 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+++-+|..+-+. |+|++|..+.+.++++-|.+
T Consensus 3 ~lY~lAig~ykl-~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYKL-GEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCc
Confidence 567777777885 99999999999999998875
No 357
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.85 E-value=84 Score=28.37 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
+.-..+|..+...|+++.|++.+-.+.+..
T Consensus 237 ~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 237 EAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456778888999999999998888777653
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.75 E-value=1.5e+02 Score=30.98 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
++++|....+.++...+++-...+ +.++..+|.+..-. |++++|..+..++-++.+..+.+....-+...-+.++..+
T Consensus 473 ~~e~a~~lar~al~~L~~~~~~~r-~~~~sv~~~a~~~~-G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~q 550 (894)
T COG2909 473 DPEEAEDLARLALVQLPEAAYRSR-IVALSVLGEAAHIR-GELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQ 550 (894)
T ss_pred CHHHHHHHHHHHHHhcccccchhh-hhhhhhhhHHHHHh-chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh
Confidence 788888888888888877655433 34677888887776 9999999998888888888777777777777778888888
Q ss_pred cC--HHHHHHHHHHH
Q psy9376 168 QN--YNKAIQIYEEV 180 (320)
Q Consensus 168 g~--y~~Ai~~y~~~ 180 (320)
|+ +.+....|...
T Consensus 551 Gq~~~a~~~~~~~~~ 565 (894)
T COG2909 551 GQVARAEQEKAFNLI 565 (894)
T ss_pred hHHHHHHHHHHHHHH
Confidence 83 44444445444
No 359
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=68.29 E-value=14 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.6
Q ss_pred HhccCCHHHHHHHHHHHHhHhhc
Q psy9376 124 ETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 124 ~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
... |++++|+.+|.++++.|..
T Consensus 17 D~~-g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 17 DQR-GDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHh-ccHHHHHHHHHHHHHHHHH
Confidence 444 8888888888888887654
No 360
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.25 E-value=34 Score=30.67 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
.++..+++.+... |+++.+++.+++.+.+.+-+ -..+..+-..|...|+...|+..|++...
T Consensus 154 ~~l~~lae~~~~~-~~~~~~~~~l~~Li~~dp~~------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIAC-GRADAVIEHLERLIELDPYD------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3688899999987 99999999999999987765 35788889999999999999999998865
No 361
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=68.10 E-value=16 Score=25.98 Aligned_cols=37 Identities=11% Similarity=-0.095 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
+-|+.|.+..++| ..+-..|+.+.|+.+|++++....
T Consensus 3 ~~~~~A~~~I~ka-L~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 3 GYYKQAFEEISKA-LRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred hHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHHHHHH
Confidence 4566676666664 444555777777777777776653
No 362
>KOG1920|consensus
Probab=67.91 E-value=67 Score=34.45 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=14.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAA 141 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~ 141 (320)
+..+|.+...-++++++|+..|-+|.
T Consensus 1015 h~eAa~il~e~~sd~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSDPEEAVALLCKAK 1040 (1265)
T ss_pred chhHHHHHHHHhcCHHHHHHHHhhHh
Confidence 33444444443467777777665544
No 363
>KOG4521|consensus
Probab=67.27 E-value=72 Score=34.22 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=64.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-------hcC----CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCF-------KKT----DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y-------~~~----~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
|.+|...|...+|++||.+|..-. +...++..+..-. ..+ ....|+.||.+++.++.+.+-.
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~-------ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGF-------GEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhcc-------ccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 555666788888888888887643 1222333321110 011 1334677777777777776665
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHH------------HHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKA------------VEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~A------------i~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
+.+-+.-...-..... .++..| ...+-+|....-.+.+.+....|+..+..++...|+.+
T Consensus 1000 E~vcQlA~~AIe~l~d--d~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPD--DNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHHHhCCC--cchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 5443221111110000 011111 12234444444455556667789999999998888764
No 364
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.90 E-value=16 Score=20.24 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+|..+...+.+.|+++.|.++|+.....
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5677888899999999999999987654
No 365
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=66.73 E-value=20 Score=21.12 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHH--HHHhHhh
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYE--QAATYFK 145 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~--kA~~~~~ 145 (320)
.+..+|-.+... |++++|++.|+ -+..+.+
T Consensus 3 ~~y~~a~~~y~~-~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQK-GKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhcc
Confidence 466778777777 99999999954 6655543
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.60 E-value=25 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAAT 142 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~ 142 (320)
.++|.+|... |+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~-Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEM-GDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHc-CChHHHHHHHHHHHH
Confidence 5789999997 999999999999884
No 367
>KOG0985|consensus
Probab=66.47 E-value=1.9e+02 Score=31.04 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 155 KCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 155 ~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
..+.+++..+..+|+|..|++.-+++..
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3455677777788888888777776643
No 368
>KOG0985|consensus
Probab=65.52 E-value=2e+02 Score=30.91 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy9376 95 CLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAI 174 (320)
Q Consensus 95 ~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai 174 (320)
.+++|.+.....+.+ .+|..+|.+--.. |...+||+.|-+|-+ ...|..+.++-.+.|.|++=+
T Consensus 1090 ~ldRA~efAe~~n~p----~vWsqlakAQL~~-~~v~dAieSyikadD-----------ps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNEP----AVWSQLAKAQLQG-GLVKDAIESYIKADD-----------PSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred hHHHHHHHHHhhCCh----HHHHHHHHHHHhc-CchHHHHHHHHhcCC-----------cHHHHHHHHHHHhcCcHHHHH
Confidence 334444444444443 3799999988887 899999999966532 236777888888999999999
Q ss_pred HHHHHHHHhhhhhhhhhcchhHhHHH-HHHHHHhh------hh------HHHHHHHHHH--HHhCCCccC-cHHHHHHHH
Q psy9376 175 QIYEEVGRTSLDSSLLKYSAKEYFFR-AALCHLCI------DV------INAHNAIDRY--KTIYPAFQD-SREYKLLRI 238 (320)
Q Consensus 175 ~~y~~~~~~~~~~~~~~~~~~~~~~~-a~~~~l~~------d~------~~~~~A~~~y--~~~~~~f~~-s~e~~~l~~ 238 (320)
.++..+-.......+- ....+. +-.-++.. ++ .-.+++++.- +.+--.|.. |.-.++..-
T Consensus 1154 ~yL~MaRkk~~E~~id----~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1154 KYLLMARKKVREPYID----SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLAST 1229 (1666)
T ss_pred HHHHHHHHhhcCccch----HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHH
Confidence 9888775432221110 000000 00111110 00 0011222211 111001111 222233333
Q ss_pred HHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHH
Q psy9376 239 LIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRI 275 (320)
Q Consensus 239 l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i 275 (320)
|+ -.|+|+.|+..-.++....-|+.-+...|
T Consensus 1230 LV------~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1230 LV------YLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred HH------HHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 33 26899999999999999888988877544
No 369
>KOG2460|consensus
Probab=65.39 E-value=1.4e+02 Score=29.18 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhchhHHHhHHHHHHHHhHHHHHHHHHhhh
Q psy9376 250 GFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAYTQYKA 318 (320)
Q Consensus 250 ~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~y~~~a~~c~~~~~~~~~~~~~~~ 318 (320)
++.+-...|+.+++ .+..|++..|-.++.+-.-.+.++--||++..|....+.--++++|++
T Consensus 379 rpqdl~RLYd~iik-------nl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~E 440 (593)
T KOG2460|consen 379 RPQDLERLYDSIIK-------NLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSE 440 (593)
T ss_pred CHHHHHHHHHHHHH-------HHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777764 566677777777777888899999999999999999999999999976
No 370
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=64.95 E-value=41 Score=29.88 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
.+..|.++..+|+-....-|+....+.+-..-+..|... .+|+-|..||.+|..++.++.-+....+.-..+-....++
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~i-k~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNI-KDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhH-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhh
Confidence 678899999999999999999888888888888888885 9999999999999999988765444433333344444333
No 371
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=64.36 E-value=44 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
.+.|+.+..+| .-.-..|++++|+.+|..+++.+.
T Consensus 3 ~~~a~~l~~~A-v~~D~~g~~~~Al~~Y~~a~e~l~ 37 (75)
T cd02656 3 LQQAKELIKQA-VKEDEDGNYEEALELYKEALDYLL 37 (75)
T ss_pred HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45666665554 556667888888888888888764
No 372
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=63.56 E-value=15 Score=20.73 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q psy9376 76 NLLDAANCFKKT-----DNEAAIDCLSKAIV 101 (320)
Q Consensus 76 ~~~~aa~~y~~~-----~~~eA~~~~~kA~~ 101 (320)
+...+|.+|... ++.+|+.++++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 455667777654 78899999998875
No 373
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.37 E-value=50 Score=23.24 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~ 104 (320)
++++|+.+|..|++.+.
T Consensus 21 ~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 21 RYSEAVFYYKEAAQLLI 37 (76)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55666666666665554
No 374
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=61.79 E-value=69 Score=24.37 Aligned_cols=64 Identities=20% Similarity=0.066 Sum_probs=39.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHcc----C-------HHHHHHHHHHHHHhhhhh
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQ----N-------YNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g----~-------y~~Ai~~y~~~~~~~~~~ 187 (320)
+.-+-.. |++-+|++..+..+....+..+. .-....=|.++.++. + .--++++|.++...+|..
T Consensus 3 A~~~~~r-GnhiKAL~iied~i~~h~~~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 3 AKDYFAR-GNHIKALEIIEDLISRHGEDESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHHccCCCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 3444555 99999999999999988776541 122333344443322 2 234678888877666554
No 375
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.22 E-value=57 Score=22.91 Aligned_cols=33 Identities=12% Similarity=-0.048 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
.|..+..+ +.-+-..|++.+|+.+|++++++..
T Consensus 5 ~A~~~a~~-AVe~D~~gr~~eAi~~Y~~aIe~L~ 37 (75)
T cd02682 5 MARKYAIN-AVKAEKEGNAEDAITNYKKAIEVLS 37 (75)
T ss_pred HHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34444444 3555567777888887777777654
No 376
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=59.59 E-value=58 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
.+|+++..+| .-.-..|+|++|..+|..+++.+.
T Consensus 4 ~~A~~l~~~A-ve~d~~~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 4 EQAAELIRLA-LEKEEEGDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred HHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5677777765 444456888888888888888764
No 377
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=59.58 E-value=83 Score=24.56 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC--chH-------HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES--NSS-------ANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~--~~~-------a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
+..+|..-... +++-.+|-+|++|+.+-.+... ..+ ..-...++|..+...|+.+=.+++++-+..
T Consensus 4 htllAd~a~~~-~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKE-ADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 56677776776 8999999999999988766531 111 122346788899999999999998886643
No 378
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=57.70 E-value=1.1e+02 Score=29.27 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-----------CCh-HHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q psy9376 73 AACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDM-----------GRF-TMAAKHHQTIAEIYETDCVDQEKAVEHYEQA 140 (320)
Q Consensus 73 aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~-----------~~~-~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA 140 (320)
.-.++..+..+|+..+|..|+--|..|+++..+- ++. .-+.-.-.+|..+|... ++++-|+..-.++
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~-rkpdlALnh~hrs 254 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRM-RKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhc-CCCchHHHHHhhh
Confidence 3456777788888888888888888888876431 111 11223356788899997 9999999999999
Q ss_pred HhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 141 ATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 141 ~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
+.+.|..- .....-|.+...+.+|.+|...+--+
T Consensus 255 I~lnP~~f------rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 255 INLNPSYF------RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhcCcchh------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877642 12334466777888888887654433
No 379
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=57.46 E-value=87 Score=29.07 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHH
Q psy9376 29 KIDEAIECYTRAANMFKMA---------KKWNNAGKAFVEAANLHMK 66 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~---------g~~~~A~~~y~kA~~~~~~ 66 (320)
.+|.|.-+|+-++ ++... .....|..+|++|+-++.-
T Consensus 102 ~fEka~VLfNiga-l~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~ 147 (355)
T cd09241 102 KFERANILYNLGA-LYSQLALSENRYTDEGLKRACSYFQASAGCFEY 147 (355)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3677776666543 33221 3478888899998888753
No 380
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=57.45 E-value=1.4e+02 Score=27.64 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q psy9376 29 KIDEAIECYTRAANMFKMAK---------KWNNAGKAFVEAANLHMK 66 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g---------~~~~A~~~y~kA~~~~~~ 66 (320)
.+|.|.-+|+-++. +...+ ....|..+|++|+-++.-
T Consensus 115 ~fEka~vlfNiaal-~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~ 160 (346)
T cd09240 115 GYEKVCVLFNIAAL-QSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNH 160 (346)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 56666666665432 32221 257788899998888753
No 381
>KOG0686|consensus
Probab=57.32 E-value=1.8e+02 Score=27.66 Aligned_cols=143 Identities=11% Similarity=0.115 Sum_probs=81.9
Q ss_pred HHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHH
Q psy9376 136 HYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAH 214 (320)
Q Consensus 136 ~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~ 214 (320)
-++.=++-++++.-.......+..+|+-|...|+.+.|++.|-++-.-+.+...+ .+.|.+..++-++. +.+...
T Consensus 132 ~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv----Inm~ln~i~VSI~~~nw~hv~ 207 (466)
T KOG0686|consen 132 KLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV----INMCLNLILVSIYMGNWGHVL 207 (466)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH----HHHHHHHHHHHHhhcchhhhh
Confidence 3444455666666566667789999999999999999999999976656554432 35556666665553 222211
Q ss_pred HHHHHH-------HHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCch
Q psy9376 215 NAIDRY-------KTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSS 287 (320)
Q Consensus 215 ~A~~~y-------~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~ 287 (320)
.-..+. .++....+.-- ++...+.. + ...+|..|.+.|-.+.. ...+ -
T Consensus 208 sy~~~A~st~~~~~~~~q~v~~kl--~C~agLa~-L---~lkkyk~aa~~fL~~~~------------------~~~d-~ 262 (466)
T KOG0686|consen 208 SYISKAESTPDANENLAQEVPAKL--KCAAGLAN-L---LLKKYKSAAKYFLLAEF------------------DHCD-Y 262 (466)
T ss_pred hHHHHHHhCchhhhhHHHhcCcch--HHHHHHHH-H---HHHHHHHHHHHHHhCCC------------------CccC-c
Confidence 111111 11111111111 22222221 1 25688888888876654 2222 1
Q ss_pred hhhchhHHHhHHHHHHHHhH
Q psy9376 288 LLKYSAKEYFFRAALCHLCI 307 (320)
Q Consensus 288 l~~~~~~~y~~~a~~c~~~~ 307 (320)
-.-.+-.|.=...+||-|++
T Consensus 263 ~~ivtpsdv~iYggLcALAt 282 (466)
T KOG0686|consen 263 PEIVTPSDVAIYGGLCALAT 282 (466)
T ss_pred cceecchhhHHHHhhHhhcc
Confidence 12233356666789999988
No 382
>KOG4014|consensus
Probab=57.12 E-value=73 Score=26.81 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHc
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-----DNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-----~~~eA~~~~~kA~~l~~~~ 106 (320)
.+|.+.|..+-.+|-++. . ..+-.|++.+|... +-++|-.+-.+|.++..+.
T Consensus 181 ~kDMdka~qfa~kACel~----~----~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD----I----PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hHhHHHHHHHHHHHHhcC----C----hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 346666666666665552 2 23445666777765 5677777777777776543
No 383
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=57.08 E-value=2e+02 Score=28.53 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHH 163 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~ 163 (320)
+-+.++..|.+|+...+..-+....- -|.-+|..|-+. ++|.+|+.++-+|.+..+.-+=.+.-.++|..+-++
T Consensus 294 ~r~~~~~l~~~AI~sa~~~Y~n~HvY-PYty~gg~~yR~-~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 294 GRPTPLELFNEAISSARTYYNNHHVY-PYTYLGGYYYRH-KRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp TS--HHHHHHHHHHHHHHHCTT--SH-HHHHHHHHHHHT-T-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCccc-cceehhhHHHHH-HHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 34567788888887765443222111 244455545554 899999999999887766643333334455544444
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.94 E-value=72 Score=23.08 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=35.0
Q ss_pred HHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 134 VEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 134 i~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
+..++++++-.|.+ ......+|..+...|++++|++.+-++.+..+
T Consensus 8 ~~al~~~~a~~P~D------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDD------LDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 55667777766653 46888999999999999999999999886543
No 385
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.82 E-value=1.5e+02 Score=26.82 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~ 126 (320)
+..++-++-+.+.++-.+..+-....++++.+.|..|.+. +.+.+.+...+...-....|-.-+.--+...+|-+|..+
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 4445556666554444443333456788999999999987 888888888888777777776666666778888887764
Q ss_pred cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhc
Q psy9376 127 CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKY 192 (320)
Q Consensus 127 l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~ 192 (320)
.- .-+..+.+-.+++..|+|......-.--|-......++.+|..++...........++.|
T Consensus 169 -~v---V~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY 230 (412)
T COG5187 169 -KV---VEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISY 230 (412)
T ss_pred -HH---HHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccH
Confidence 22 233445566677777887766555444555555667889998888888776555555443
No 386
>KOG1463|consensus
Probab=56.68 E-value=1.7e+02 Score=27.18 Aligned_cols=136 Identities=12% Similarity=0.043 Sum_probs=95.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CChHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-GRFTMAAKHHQT 118 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~~~~~aa~~~~~ 118 (320)
...|...++|.+|+..-...+.-..++.+...-.+.+..-+.+|... +..+|...+.-|....... -.|...|..-..
T Consensus 135 i~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLq 214 (411)
T KOG1463|consen 135 IRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQ 214 (411)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHh
Confidence 34566678888888888887777778777766555555556666666 6666766666554433222 235666666667
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIY 177 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y 177 (320)
-|.++-.. .+|.-|-.+|-+|.+=|...+....+...+.-+--+-+-++..++--.+.
T Consensus 215 SGIlha~e-kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 215 SGILHAAE-KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred ccceeecc-cccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777776 89999999999999999998887777777776666666667766654333
No 387
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=55.72 E-value=38 Score=19.47 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=19.1
Q ss_pred HHHHHHH--HHHHhcc----CCHHHHHHHHHHHHhH
Q psy9376 114 KHHQTIA--EIYETDC----VDQEKAVEHYEQAATY 143 (320)
Q Consensus 114 ~~~~~la--~~y~~~l----~~~~~Ai~~y~kA~~~ 143 (320)
.+...+| .+|..-. .++++|+.+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 3566677 5555421 1478888888888763
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=55.17 E-value=2.2e+02 Score=28.05 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
.+..++.+|... ..++=-..+++.+++.-++ ...=..++..|.+ ++-.+++.+|.++....+...... .-
T Consensus 101 al~el~q~y~en--~n~~l~~lWer~ve~dfnD------vv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~-~i 170 (711)
T COG1747 101 ALLELLQCYKEN--GNEQLYSLWERLVEYDFND------VVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNA-AI 170 (711)
T ss_pred HHHHHHHHHHhc--CchhhHHHHHHHHHhcchh------HHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhh-hH
Confidence 577777777774 5566666777777654332 2223456666665 888999999999887644322110 01
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
++-|-. +..+. ..+.+.-+..-.++-......+--.++.++..-+ .+.+++.+||.+...++++|.-..+.--.
T Consensus 171 ~evWeK--L~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y--s~~eN~~eai~Ilk~il~~d~k~~~ar~~ 244 (711)
T COG1747 171 KEVWEK--LPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY--SENENWTEAIRILKHILEHDEKDVWARKE 244 (711)
T ss_pred HHHHHH--HHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh--ccccCHHHHHHHHHHHhhhcchhhhHHHH
Confidence 111111 00000 1122222222222222222222223345655444 36789999999999998888766665555
Q ss_pred HHHhhcCCCCCchhhhchhHHHhHHHHHHHHhHHHHHHHHHhhh
Q psy9376 275 IKKQVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAYTQYKA 318 (320)
Q Consensus 275 i~~~~~~~~~~~~l~~~~~~~y~~~a~~c~~~~~~~~~~~~~~~ 318 (320)
|-+.+.+..-+-+ .+-||....++-++=.+.+.++.++..
T Consensus 245 ~i~~lRd~y~~~~----~~e~yl~~s~i~~~~rnf~~~l~dFek 284 (711)
T COG1747 245 IIENLRDKYRGHS----QLEEYLKISNISQSGRNFFEALNDFEK 284 (711)
T ss_pred HHHHHHHHhccch----hHHHHHHhcchhhccccHHHHHHHHHH
Confidence 5555544322221 245788888888887777777766653
No 389
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.03 E-value=1.7e+02 Score=26.65 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
.+...+..|... |.+.+|+.+-++++.+.|-. .+.+..+-.++...|+--.|++.|++..+
T Consensus 281 llgkva~~yle~-g~~neAi~l~qr~ltldpL~------e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEA-GKPNEAIQLHQRALTLDPLS------EQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHhhcChhh------hHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 355667778887 99999999999999987764 45777788889999999999999987754
No 390
>KOG2114|consensus
Probab=54.84 E-value=1.9e+02 Score=30.05 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=34.4
Q ss_pred HHHHHhHhhccCC-chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 137 YEQAATYFKGEES-NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 137 y~kA~~~~~~~~~-~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
|.-|+.+.+..+. .....++....|+-+...|++++|+..|-+...
T Consensus 350 y~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 350 YKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 4445555555443 334578889999999999999999999998764
No 391
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=52.97 E-value=1.4e+02 Score=29.49 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD-CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL 166 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~-l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~ 166 (320)
+-.|-...-++.+-+.-+.|....=..++.+||.+-+-. ...-..++++|.+|+...+..-+-. -.-.|.-+|..+.+
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg~~yR 330 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGGYYYR 330 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhhHHHH
Confidence 446677777888888888888777777888888875542 0223568999999997665532211 24567788999999
Q ss_pred ccCHHHHHHHHHHHHH
Q psy9376 167 LQNYNKAIQIYEEVGR 182 (320)
Q Consensus 167 ~g~y~~Ai~~y~~~~~ 182 (320)
.++|.+|+..+-++..
T Consensus 331 ~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 331 HKRYREALRSWAEAAD 346 (618)
T ss_dssp TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 392
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.89 E-value=1.6e+02 Score=25.66 Aligned_cols=119 Identities=13% Similarity=-0.028 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHHHHHcCChHH------HHHHHHHHHHH-HhcCC
Q psy9376 28 NKIDEAIECYTRAANMFK------------MAKKWNNAGKAFVEAANLHMKSGTKHD------AACNLLDAANC-FKKTD 88 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~------------~~g~~~~A~~~y~kA~~~~~~~~~~~~------aa~~~~~aa~~-y~~~~ 88 (320)
|+|..=++-|-.+|.-+. ..|+++.|++....|++-...+.+.+. .++-....+.. +....
T Consensus 65 P~Y~p~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~ 144 (230)
T PHA02537 65 PKYLPWVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGE 144 (230)
T ss_pred cchHHHHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCC
Confidence 555555555555543332 258999999998888887654443321 12222222222 22221
Q ss_pred -HHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHH---------HhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 89 -NEAAIDCLSKAIVIYTDMGRF-TMAAKHHQTIAEIY---------ETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 89 -~~eA~~~~~kA~~l~~~~~~~-~~aa~~~~~la~~y---------~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
++- ........+-.+..-+ .-.|+.+.-+|..+ ... +++.+|+.++++|..+.+..|-
T Consensus 145 ~~e~--~~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~-~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 145 SVEP--YFLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDA-ETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred CCCh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCc-ccHHHHHHHHHHHHHhCCCCCh
Confidence 111 1122222232222222 33466677777777 344 7889999999999999988773
No 393
>KOG1938|consensus
Probab=51.50 E-value=83 Score=32.96 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHh
Q psy9376 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144 (320)
Q Consensus 71 ~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~ 144 (320)
...+-....+|..|... .+-.|++||.+|+..+...++....-..++.++..|.- ...+.|-+.+.+.+...
T Consensus 313 ~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~l--~~~D~a~~~f~~~i~~~ 385 (960)
T KOG1938|consen 313 RKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYLL--CQEDDADEEFSKLIADC 385 (960)
T ss_pred chhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhhh--hcchhHHHHHHHHHhhh
Confidence 33333344445555555 57899999999999998888876666778888886653 35677777776666443
No 394
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=51.06 E-value=2e+02 Score=26.73 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHH----Hc-------CCHHHHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFK----MA-------KKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~----~~-------g~~~~A~~~y~kA~~~~~ 65 (320)
-.||.+.-+|+-++..-+ .. .....|..+|++|+-++.
T Consensus 104 l~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~ 152 (353)
T cd09243 104 AIFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQ 152 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 356666666665433211 11 225677788888888875
No 395
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=50.38 E-value=1.8e+02 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHc
Q psy9376 29 KIDEAIECYTRAANMFKMA---------KKWNNAGKAFVEAANLHMKS 67 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~---------g~~~~A~~~y~kA~~~~~~~ 67 (320)
.+|.|.-+|+-++ .+... .....|..+|++|+-++.-+
T Consensus 107 ~fEka~vlfNiaa-l~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 153 (353)
T cd09246 107 HFEKAAVLFNLGA-LSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHL 153 (353)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666543 23222 13788888888888887543
No 396
>KOG0890|consensus
Probab=49.32 E-value=5.1e+02 Score=30.55 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 89 NEAAIDCLSKAIVIYTDM-GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~-~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
..+-|-.++++.-....+ +-..+.|.+|...|.+-+.. |+++.|-.+.-.|.+.- ..+.....|..+...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a-G~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~ 1715 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA-GHLQRAQNALLNAKESR--------LPEIVLERAKLLWQT 1715 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc-ccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhh
Confidence 345556666666555444 45678899999999999998 99999999888887753 246888999999999
Q ss_pred cCHHHHHHHHHHHHHh
Q psy9376 168 QNYNKAIQIYEEVGRT 183 (320)
Q Consensus 168 g~y~~Ai~~y~~~~~~ 183 (320)
|+-..|+...++....
T Consensus 1716 gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1716 GDELNALSVLQEILSK 1731 (2382)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999999865
No 397
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.85 E-value=2.2e+02 Score=25.90 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHcc
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQ 168 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g 168 (320)
.++-++-+.+++.-..+.+--...+.++.++|..|-+. ++.+.+.++..+..+-....|......-+...+|-+|....
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi-~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~ 169 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQI-MDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK 169 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH
Confidence 34555556555554444333456678899999999996 99999999998888777666666656666677787776544
Q ss_pred CHHHHHHHHH
Q psy9376 169 NYNKAIQIYE 178 (320)
Q Consensus 169 ~y~~Ai~~y~ 178 (320)
=.++-++..+
T Consensus 170 vV~e~lE~~~ 179 (412)
T COG5187 170 VVEESLEVAD 179 (412)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 398
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.84 E-value=1.4e+02 Score=28.24 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=44.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh-----HhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAAT-----YFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~-----~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
+..+..++-- ||+|..|+...+- ++ +|.. -+.-...++..+|-.|.-+++|.+|+++|..+..
T Consensus 125 ligLlRvh~L-LGDY~~Alk~l~~-idl~~~~l~~~--V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCL-LGDYYQALKVLEN-IDLNKKGLYTK--VPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHh-ccCHHHHHHHhhc-cCcccchhhcc--CcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666 4999999987642 22 2221 1223356788999999999999999999999864
No 399
>KOG2908|consensus
Probab=47.05 E-value=2.4e+02 Score=26.13 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC-CchHHHHHHHHHHHH-HH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE-SNSSANKCLLKVAHH-AA 165 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~-~~~~a~~~~~~la~~-~~ 165 (320)
+.++|+++.++.++-......++........+|.++-.. |+..++.+.....-....... -+...-..|..++.- |.
T Consensus 90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i-~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEI-NDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK 168 (380)
T ss_pred cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence 677888888888888877777788888888888888876 888888888777766554433 233344455555544 44
Q ss_pred HccCHHHH
Q psy9376 166 LLQNYNKA 173 (320)
Q Consensus 166 ~~g~y~~A 173 (320)
..|++...
T Consensus 169 ~~~d~a~y 176 (380)
T KOG2908|consen 169 KIGDFASY 176 (380)
T ss_pred HHHhHHHH
Confidence 55665543
No 400
>PRK10941 hypothetical protein; Provisional
Probab=45.79 E-value=1.3e+02 Score=26.72 Aligned_cols=68 Identities=9% Similarity=-0.050 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
.....++=.+|... +++.|+.+.+..+.+.|+.-. -+..-|.+|.+. |.+..|+.-++.-++..|+..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~------e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY------EIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCch
Confidence 34455555666666 899999999999999987654 477789999996 999999999998888888754
No 401
>KOG4014|consensus
Probab=44.93 E-value=1.9e+02 Score=24.42 Aligned_cols=91 Identities=12% Similarity=-0.003 Sum_probs=59.2
Q ss_pred HcCCHHHHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 46 MAKKWNNAGK-AFVEAANLHMKSGTKHDAACNLLDAANCFKKT------DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 46 ~~g~~~~A~~-~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~------~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
.+|+|-+++. -|++|..++.++-+..+-+.+-...|.-+... ++..|++++..|.+. +.+ .+-..
T Consensus 39 lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----n~~----~aC~~ 110 (248)
T KOG4014|consen 39 LLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----NIP----QACRY 110 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----CCH----HHHhh
Confidence 3566666654 67888888887766666666666666665543 799999999999873 221 13344
Q ss_pred HHHHHHh-----c-cCCHHHHHHHHHHHHhHh
Q psy9376 119 IAEIYET-----D-CVDQEKAVEHYEQAATYF 144 (320)
Q Consensus 119 la~~y~~-----~-l~~~~~Ai~~y~kA~~~~ 144 (320)
+|.+.-. . .-+.++|.+++.+|.++-
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDLE 142 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccCC
Confidence 4444322 1 023688999999998763
No 402
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=43.98 E-value=2.6e+02 Score=26.10 Aligned_cols=17 Identities=24% Similarity=-0.058 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9376 50 WNNAGKAFVEAANLHMK 66 (320)
Q Consensus 50 ~~~A~~~y~kA~~~~~~ 66 (320)
...|..+|+.|+-++..
T Consensus 139 lK~A~~~fq~AAG~F~~ 155 (361)
T cd09239 139 MKVACTHFQCAAWAFAY 155 (361)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66788888888888753
No 403
>KOG1914|consensus
Probab=43.91 E-value=3.4e+02 Score=26.95 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhccCC-------HHHHHHHHHHHHhH
Q psy9376 112 AAKHHQTIAEIYETDCVD-------QEKAVEHYEQAATY 143 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~-------~~~Ai~~y~kA~~~ 143 (320)
.+..+..++.++... |+ -+++..+|+++++.
T Consensus 285 ~s~yl~~~s~l~~~~-~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 285 YSMYLIEISDLLTEK-GDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHHHhhHHHHHh-cccccchhhHHHHHHHHHHHHHH
Confidence 334455555555553 44 35566666666554
No 404
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=43.57 E-value=1.8e+02 Score=23.72 Aligned_cols=71 Identities=7% Similarity=-0.046 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..-..+.++..+-... ++.+.+...+.-.-.+-|.. .+.-.--|.+++..|++.+|+.+++++....+..+
T Consensus 8 ~iv~gLie~~~~al~~-~~~~D~e~lL~ALrvLRP~~------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRL-GDPDDAEALLDALRVLRPEF------PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 3444566666655554 78888877776544454443 34556678899999999999999999887665544
No 405
>KOG1310|consensus
Probab=42.85 E-value=57 Score=31.95 Aligned_cols=104 Identities=17% Similarity=0.085 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHc
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT----DNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~----~~~eA~~~~~kA~~l~~~~ 106 (320)
.+-++.|.+.|+=....+....|+..|.++..-. ......|.+-+.++.+. +.-.|+.-...|+.+.+..
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~ 444 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYV------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI 444 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhc------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH
Confidence 3445555555555555567788888888877653 23556666666665554 4445666666777666544
Q ss_pred CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
-. +++.++.++... +.+.+|+++-.-+...+|.+
T Consensus 445 ~k------ah~~la~aL~el-~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 445 QK------AHFRLARALNEL-TRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HH------HHHHHHHHHHHH-hhHHHhhhhHHHHhhcCchh
Confidence 33 789999999985 99999999988777777743
No 406
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=40.75 E-value=59 Score=35.51 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHH
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA 165 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~ 165 (320)
....|+....+|..+-.. |.+..|+..|..|+.+.+..+++-+.+.++..++.+..
T Consensus 238 ~r~~gR~~k~~gd~~Lla-G~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~ 293 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLA-GRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLL 293 (1185)
T ss_pred hhhhhhhhhhhhhHHHHc-CCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHH
Confidence 345677899999999997 99999999999999999999999999999999887754
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.48 E-value=4.6e+02 Score=27.55 Aligned_cols=88 Identities=11% Similarity=-0.032 Sum_probs=69.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|.+-...|+++.|.+.-+.++.-....-... -+.++...|.+..-. ++++|..+..++..+.+..+.+.-+..+...-
T Consensus 465 a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~ 543 (894)
T COG2909 465 AQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQ 543 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4455567899999999988888765544333 455666667665444 89999999999999999999998888888889
Q ss_pred HHHHHhccCCH
Q psy9376 120 AEIYETDCVDQ 130 (320)
Q Consensus 120 a~~y~~~l~~~ 130 (320)
+.+...+ |+.
T Consensus 544 s~il~~q-Gq~ 553 (894)
T COG2909 544 SEILEAQ-GQV 553 (894)
T ss_pred HHHHHHh-hHH
Confidence 9999998 843
No 408
>KOG0276|consensus
Probab=39.84 E-value=1.8e+02 Score=29.17 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKAIV 101 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA~~ 101 (320)
.-|.++|...... ++..|.+|+.+|-+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 4477778877776 88899999998854
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.71 E-value=2.2e+02 Score=24.69 Aligned_cols=54 Identities=24% Similarity=0.140 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHH-cC--ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 89 NEAAIDCLSKAIVIYTD-MG--RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~-~~--~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
.+.|..+|++|.++... .. +|-..+-++.-.--.|+.. |+.++|+..-++|.+-
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~-~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEIL-NDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Confidence 36799999999999887 33 3555555555555566775 9999999988777654
No 410
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.26 E-value=1.4e+02 Score=27.17 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=41.9
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHh
Q psy9376 81 ANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144 (320)
Q Consensus 81 a~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~ 144 (320)
+..|.+. .+.+|+++.++++.+.|=+.. .+..+=.++... |+--.++..|++-....
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~------~nk~lm~~la~~-gD~is~~khyerya~vl 343 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQ------DNKGLMASLATL-GDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhH------HHHHHHHHHHHh-ccchhhhhHHHHHHHHH
Confidence 4445555 788999999999988876655 466666777775 88888888887766543
No 411
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.25 E-value=1.6e+02 Score=27.44 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhhcc------CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHH
Q psy9376 130 QEKAVEHYEQAATYFKGE------ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAAL 203 (320)
Q Consensus 130 ~~~Ai~~y~kA~~~~~~~------~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (320)
|.++-..|..++....-+ ....--.+++..++.++..+|++..|.++.++++-.....-...|..-..-...+.
T Consensus 10 Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Q ss_pred HHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 204 CHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 204 ~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
|+ +....+.++...+. ...+..+. .-|-+..|++.-.-...|||+
T Consensus 90 ~r-----------------L~~~~~eNR~fflal~r~i~~L~--~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 90 CR-----------------LDYRRPENRQFFLALFRYIQSLG--RRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred cc-----------------cCCccccchHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhcCCC
No 412
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=36.07 E-value=2.1e+02 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCC-----hHHH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGR-----FTMA----AKHHQTIAEIYETDCVDQEKAVEHYEQAAT 142 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~-----~~~a----a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~ 142 (320)
++-.++-+|++|+.+..+... .++. .-.-.|+|..++.+ |+.+=.+.+++-|.+
T Consensus 16 ~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~-gd~~yELkYLqlASE 78 (140)
T PF10952_consen 16 DPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQ-GDSDYELKYLQLASE 78 (140)
T ss_pred cHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHc-CChHHHHHHHHHHHH
Confidence 566666667777666655531 1111 12356899999998 999999998866654
No 413
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=35.47 E-value=4.2e+02 Score=25.69 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
.+.|+.+...--.|.. |+|.++.-+-.-...+.|+ ..+++-+|-++...++|++|-.++.+.
T Consensus 460 ~eian~LaDAEyLysq--gey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQ--GEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3456666665555554 9999999888778888775 578999999999999999999999865
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.46 E-value=1.2e+02 Score=25.03 Aligned_cols=49 Identities=20% Similarity=0.070 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 131 EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 131 ~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+..++..++.+...+. ..++.+++.++..+|+.++|.....++....+.
T Consensus 128 ~~~~~~a~~~l~~~P~-------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-------PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3444455555555554 568999999999999999999999998877663
No 415
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=35.36 E-value=4e+02 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.232 Sum_probs=21.6
Q ss_pred CHhHHHHHHHHHhhhcchhhhHHHHHH
Q psy9376 247 NVDGFTEAVKDYDSISRLDQWYTTVLL 273 (320)
Q Consensus 247 d~~~~~~Ai~~ye~~~~ld~~~~~~l~ 273 (320)
+.++|..|-..-+.+.+.+|.....|+
T Consensus 341 da~e~~~ARa~Aeaa~r~~pres~~lL 367 (531)
T COG3898 341 DAGEFSAARAKAEAAAREAPRESAYLL 367 (531)
T ss_pred hccchHHHHHHHHHHhhhCchhhHHHH
Confidence 567888888888888888888776665
No 416
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=35.31 E-value=3.1e+02 Score=24.05 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhHhhc-c--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 130 QEKAVEHYEQAATYFKG-E--ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 130 ~~~Ai~~y~kA~~~~~~-~--~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
.++|...|++|.++... . -+|..-+-++.--.-.|.-+++.++|+++-+++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45788899999888654 1 1233333333333344456788988887666554
No 417
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.78 E-value=2.1e+02 Score=24.78 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChH
Q psy9376 28 NKIDEAIECYTRAANMFKMAK-KWNNAGKAFVEAANLHMKSGTKH 71 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g-~~~~A~~~y~kA~~~~~~~~~~~ 71 (320)
.+..+|+.-|..++..|.... ++.+-+-++.+++=+++.++..+
T Consensus 108 rtl~eaiary~Ls~L~Y~~lek~yskqaisaLkiAWlfrdleked 152 (267)
T COG1655 108 RTLNEAIARYKLSLLNYVSLEKHYSKQAISALKIAWLFRDLEKED 152 (267)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 356788888888887776543 33344555566666776666544
No 418
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=34.68 E-value=2.2e+02 Score=24.92 Aligned_cols=54 Identities=15% Similarity=-0.024 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHH-c--CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 89 NEAAIDCLSKAIVIYTD-M--GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~-~--~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
.+.|..+|++|.++... . -+|-..+-++.-.--.|+-. +++++|+..-++|.+-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~-~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEIL-NSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 45889999999999765 2 34556665555555567775 9999999877666553
No 419
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=34.11 E-value=2.1e+02 Score=25.45 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
-.++...++=..|... ++++.|..+-++.+.+.+.+. .-...-|-+|.++|.+.-|++-++..+..+|+.+.
T Consensus 179 il~rll~~lk~~~~~e-~~~~~al~~~~r~l~l~P~dp------~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 179 ILSRLLRNLKAALLRE-LQWELALRVAERLLDLNPEDP------YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHHh-hchHHHHHHHHHHHhhCCCCh------hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3445566666677776 899999999999999988752 23566799999999999999999998888887664
No 420
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=33.98 E-value=2e+02 Score=26.74 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKM--------AKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~--------~g~~~~A~~~y~kA~~~~~ 65 (320)
-.||.|.-+|+-++..... ......|...|++|+-++.
T Consensus 102 ~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~ 147 (377)
T PF03097_consen 102 LAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQ 147 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Confidence 4688888888876433322 2356788888888888875
No 421
>KOG0890|consensus
Probab=33.82 E-value=8.7e+02 Score=28.81 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-C-
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-G- 107 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~- 107 (320)
..-.++|-+.+.+-+..|.++.|-.+..+|.+.. ....+.+-|...... +...|+..+++-++..... -
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence 4556666677777777777777777777766552 334444445554444 7888999999998665322 1
Q ss_pred ---------ChHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHhHhhcc-CCchHHHHHHHHHHHHH-----HHccCH
Q psy9376 108 ---------RFTMAAKHHQTIAEIYETDCVDQ--EKAVEHYEQAATYFKGE-ESNSSANKCLLKVAHHA-----ALLQNY 170 (320)
Q Consensus 108 ---------~~~~aa~~~~~la~~y~~~l~~~--~~Ai~~y~kA~~~~~~~-~~~~~a~~~~~~la~~~-----~~~g~y 170 (320)
+...-+.+...++...+.. ++. +.-+.+|.++.++.++. +.+...+..+.++-.-+ .+.|++
T Consensus 1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es-~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~ 1817 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEES-GNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRV 1817 (2382)
T ss_pred CccccchhhhhhhhhhHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccH
Confidence 1112234566666666665 664 44567899999999853 33333333333332221 234555
Q ss_pred HH---HHHHHHHHH
Q psy9376 171 NK---AIQIYEEVG 181 (320)
Q Consensus 171 ~~---Ai~~y~~~~ 181 (320)
.. ++-.|.++.
T Consensus 1818 ~~~l~~~~~~~~sl 1831 (2382)
T KOG0890|consen 1818 LSLLKAIYFFGRAL 1831 (2382)
T ss_pred HHHHHHHHHHHHHH
Confidence 54 444444543
No 422
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=33.16 E-value=67 Score=28.58 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
-.++.|.++..+|+-..+..++....+-|-...+..|..+.+|+-|..+|..+........+..|..
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~ 119 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWED 119 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 4578899999999999988888777777888888889999999999999999988877777766654
No 423
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=33.13 E-value=2.2e+02 Score=21.80 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHH
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYE 138 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~ 138 (320)
.+..+..+|-.. +.++.++.+.
T Consensus 43 ~~~~li~ly~~~--~~~~ll~~l~ 64 (140)
T smart00299 43 LQTKLIELYAKY--DPQKEIERLD 64 (140)
T ss_pred HHHHHHHHHHHH--CHHHHHHHHH
Confidence 344444444432 3444444443
No 424
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.43 E-value=34 Score=18.39 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 250 GFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 250 ~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
.++.+-.+|+++++.-|....++..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHH
Confidence 4667778888888766655555543
No 425
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=31.45 E-value=2.2e+02 Score=25.50 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 76 NLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 76 ~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
++..++..+... +.+.+++.+++.+.+.|-... .|..+=..|... |+...||..|.+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~------~~~~lm~~y~~~-g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEP------AYLRLMEAYLVN-GRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH------HHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 334444444443 566677777777666665444 455555666666 7888888887777665
No 426
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=31.16 E-value=5.6e+02 Score=25.79 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAAN 62 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~ 62 (320)
.+..-+....+|......|++..|+..|.-|.+
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~ 442 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLAEE 442 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 344555556666666666666666666655543
No 427
>KOG1914|consensus
Probab=30.89 E-value=5.5e+02 Score=25.57 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLH 64 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~ 64 (320)
-++..++...+.++...|+...|-..=.++.+++
T Consensus 283 y~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 283 YDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence 3555556666677777776544444444444444
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.88 E-value=3.6e+02 Score=23.40 Aligned_cols=79 Identities=19% Similarity=0.103 Sum_probs=45.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHhcc----C-----CHHHHHHHHHHHHhHhhc--cCCchHHHHHHHHHHHHH-HHccCHH
Q psy9376 104 TDMGRFTMAAKHHQTIAEIYETDC----V-----DQEKAVEHYEQAATYFKG--EESNSSANKCLLKVAHHA-ALLQNYN 171 (320)
Q Consensus 104 ~~~~~~~~aa~~~~~la~~y~~~l----~-----~~~~Ai~~y~kA~~~~~~--~~~~~~a~~~~~~la~~~-~~~g~y~ 171 (320)
|...+.....-++.-.|..|+-.. | -.++|...|++|.++... ....+.......+.+..| .-+|+.+
T Consensus 107 p~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~ 186 (236)
T PF00244_consen 107 PSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPE 186 (236)
T ss_dssp HHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HH
T ss_pred ccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChH
Confidence 344444444444555565554310 1 237789999999998877 222333334444444444 5689999
Q ss_pred HHHHHHHHHHH
Q psy9376 172 KAIQIYEEVGR 182 (320)
Q Consensus 172 ~Ai~~y~~~~~ 182 (320)
+|+++-+++..
T Consensus 187 ~A~~ia~~afd 197 (236)
T PF00244_consen 187 KAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988777754
No 429
>KOG4563|consensus
Probab=30.82 E-value=2.3e+02 Score=26.43 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSG--TKHDAACNLLDAANCFKKT 87 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~--~~~~aa~~~~~aa~~y~~~ 87 (320)
+.+.+++-.-.+|+.+...+++++|.+.|..|..+..... .......++..-|..+.+.
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLel 96 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLEL 96 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4567888888889999999999999999999998875432 2224445555555555544
No 430
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.66 E-value=2.2e+02 Score=21.36 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAAT 142 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~ 142 (320)
+..++..|... |.+++|++.+.+-.+
T Consensus 42 ~~eL~~lY~~k-g~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGK-GLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHcc-CccHHHHHHHHHHhc
Confidence 88999999998 999999999987766
No 431
>KOG1938|consensus
Probab=29.11 E-value=3.5e+02 Score=28.64 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIY-TDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL 166 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~-~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~ 166 (320)
++..|+-.+..+.-.- .+...+...+..-...|..|... +.+..|+.+|.+|+..++...........+..++..| -
T Consensus 290 dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~a-nqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y-~ 367 (960)
T KOG1938|consen 290 DLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSA-NQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVY-L 367 (960)
T ss_pred hhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccC-CChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhh-h
Confidence 3455555554444332 14445556666667778888887 8899999999999999988765444455566677644 2
Q ss_pred ccCHHHHHHHHHHHHHh
Q psy9376 167 LQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 167 ~g~y~~Ai~~y~~~~~~ 183 (320)
+-..+.|-..+.+....
T Consensus 368 l~~~D~a~~~f~~~i~~ 384 (960)
T KOG1938|consen 368 LCQEDDADEEFSKLIAD 384 (960)
T ss_pred hhcchhHHHHHHHHHhh
Confidence 33456666667666544
No 432
>KOG1497|consensus
Probab=28.95 E-value=4.7e+02 Score=24.17 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHH---------------------HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKH---------------------HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~---------------------~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
.+..+-.+...+|...+++..++.+ +..+|..|-+. ++..+|..+-.++.=+.....+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~-~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLED-DDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhhcccC
Confidence 3455555566666666666665544 56788888886 8899998888887655554455
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 150 NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 150 ~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+......-.--|.++-..+++-+|...|-+....
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566666778888888888777644
No 433
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.67 E-value=2.8e+02 Score=21.52 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
.-...+++++..+.+...+..-.+ +.++=.-|....++ ..+.|..... .+-....+-.|...|..+...|++
T Consensus 44 ~L~~lLerc~~~f~~~~~YknD~R-yLkiWi~ya~~~~d---p~~if~~L~~----~~IG~~~AlfYe~~A~~lE~~g~~ 115 (125)
T smart00777 44 GLLTLLERCIRYFEDDERYKNDPR-YLKIWLKYADNCDE---PRELFQFLYS----KGIGTKLALFYEEWAQLLEAAGRY 115 (125)
T ss_pred hHHHHHHHHHHHhhhhhhhcCCHH-HHHHHHHHHHhcCC---HHHHHHHHHH----CCcchhhHHHHHHHHHHHHHcCCH
Confidence 345667777777765544332222 23333333332133 4555644433 222334567888899999999999
Q ss_pred HHHHHHHHH
Q psy9376 171 NKAIQIYEE 179 (320)
Q Consensus 171 ~~Ai~~y~~ 179 (320)
.+|.++|+.
T Consensus 116 ~~A~~iy~~ 124 (125)
T smart00777 116 KKADEVYQL 124 (125)
T ss_pred HHHHHHHHc
Confidence 999999874
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.31 E-value=5e+02 Score=24.31 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Q psy9376 43 MFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT---DNEAAIDCLSKAIVIY 103 (320)
Q Consensus 43 ~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~---~~~eA~~~~~kA~~l~ 103 (320)
.+...++|..|...+.....- +..... ...+..+..+|..- ++.+|.+++++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 334579999999999887753 222222 56677777777765 8999999999877654
No 435
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=28.04 E-value=4.8e+02 Score=24.05 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 130 QEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 130 ~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
.-+|+-+++.++...+.+ ......+..+|..+|-.+.|.+.|....-..++..
T Consensus 199 l~~Ai~lLE~~l~~s~~n------~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~D 251 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHN------YQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLD 251 (365)
T ss_pred HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHH
Confidence 455666666665554442 56778899999999999999999998765544433
No 436
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=26.71 E-value=6.7e+02 Score=25.25 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCh--------HHHHHHHHHH
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRF--------TMAAKHHQTI 119 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~--------~~aa~~~~~l 119 (320)
.+.+.-......++.-...-|....+...|..++ +++.+++...+.+.-....... ......-..+
T Consensus 408 ~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~------~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i 481 (613)
T PF04097_consen 408 DDEDFLREIIEQAAREAEERGRFEDAILLYHLAE------EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEI 481 (613)
T ss_dssp SSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHH
Confidence 4445555666677766666666655554444433 6788888877777654433322 1222222233
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH--HHccCHHHHHHHHHHHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA--ALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~--~~~g~y~~Ai~~y~~~~ 181 (320)
...|... +.. +.+ -..........+..+..++ ...|+|++|++..++..
T Consensus 482 ~~~y~~~-~~~------~~~------~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 482 LERYKSN-PHI------SSK------VSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHTTS-HHH------HTT------S-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHhC-cch------Hhh------ccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 3333332 111 000 0000111233444555554 57799999998888765
No 437
>KOG4322|consensus
Probab=25.80 E-value=6e+02 Score=24.42 Aligned_cols=100 Identities=14% Similarity=-0.045 Sum_probs=72.0
Q ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHH
Q psy9376 82 NCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKV 160 (320)
Q Consensus 82 ~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~l 160 (320)
.++... ++..|.....++.--...-........++..++.++.+. +..-.+..+.-++...-.+-......+.+-..+
T Consensus 281 ~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g-~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~L 359 (482)
T KOG4322|consen 281 HILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESG-DTACLNLPLALMFEFKRSEYSLDYLEANENLDL 359 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHHHhccchhhhhchHHH
Confidence 343333 566666666666544444444566677788888888876 777888888777777666666666667777888
Q ss_pred HHHHHHccCHHHHHHHHHHHHH
Q psy9376 161 AHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 161 a~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
+..+.-+|-.++|+.....+..
T Consensus 360 Al~~L~LG~pk~Al~lLh~a~h 381 (482)
T KOG4322|consen 360 ALEHLALGSPKAALPLLHTAVH 381 (482)
T ss_pred HHHHHHcCChHHHHHHHHhhhh
Confidence 8888899999999999888764
No 438
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=25.70 E-value=1e+02 Score=23.85 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
-..+|+.+... |++++|+.+|-+|+..++.
T Consensus 66 qV~lGE~L~~~-G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQ-GDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHT-T-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHhCCC
Confidence 45677777777 9999999999999888766
No 439
>KOG2709|consensus
Probab=25.12 E-value=2.9e+02 Score=26.41 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
|-...+.|.+|.+. +++++|+.+|++++.+..+
T Consensus 22 A~~~V~~gl~~dE~-~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 22 AYASVEQGLCYDEV-NDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHhhcchhhh-cCHHHHHHHHHHHHHHHHh
Confidence 34678899999997 9999999999999987755
No 440
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=24.85 E-value=1.3e+02 Score=23.25 Aligned_cols=31 Identities=6% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..+|+.+...|++++|+.+|-++...+++..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 5678889999999999999999998877654
No 441
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=24.82 E-value=5.8e+02 Score=23.89 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHHHHhcc------CC----
Q psy9376 72 DAACNLLDAANCFKKT-----DNEAAIDCLSKAIVIYTDM----G---RFTMAAKHHQTIAEIYETDC------VD---- 129 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~-----~~~eA~~~~~kA~~l~~~~----~---~~~~aa~~~~~la~~y~~~l------~~---- 129 (320)
.........+..|+-. +++.-+...++-+++.... + ...---..++++|.+|...+ .+
T Consensus 169 ~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~ 248 (371)
T PF12309_consen 169 DHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQN 248 (371)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3344444445555543 6666666666666654321 1 01222345667776665421 11
Q ss_pred ----------------HHHHHHHHHHHHhHhhccC-----------CchHHHHHHHHHHHHHHHc---------cCHHHH
Q psy9376 130 ----------------QEKAVEHYEQAATYFKGEE-----------SNSSANKCLLKVAHHAALL---------QNYNKA 173 (320)
Q Consensus 130 ----------------~~~Ai~~y~kA~~~~~~~~-----------~~~~a~~~~~~la~~~~~~---------g~y~~A 173 (320)
...||.+|+.=++.+.... .......++..+|.+|.+. +....+
T Consensus 249 ~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~s 328 (371)
T PF12309_consen 249 DNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKS 328 (371)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHH
Confidence 2346666666666655321 1223345667777777554 334556
Q ss_pred HHHHHHHHHh
Q psy9376 174 IQIYEEVGRT 183 (320)
Q Consensus 174 i~~y~~~~~~ 183 (320)
+.+|+.+...
T Consensus 329 l~~y~~vv~y 338 (371)
T PF12309_consen 329 LEYYKWVVDY 338 (371)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 442
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.74 E-value=2.4e+02 Score=23.89 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
|+.++|..-+++|.+...+.++.-.--..+...|.+-..+..|-+|.-.|.-.-.
T Consensus 43 ~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 43 GDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 7788888888888777666543222223344445555567788999887775543
No 443
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.40 E-value=3.4e+02 Score=21.09 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMK 66 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~ 66 (320)
|+.++.....| ......|+++.+.....||..+...
T Consensus 32 ydgai~~l~~A-~~ai~~~~~~~~~~~l~ka~~Ii~e 67 (132)
T PRK05685 32 YEGALSFLAQA-KLAIEQGDIEAKGEYLSKAINIING 67 (132)
T ss_pred HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45555555554 3334568888888888888877654
No 444
>KOG2168|consensus
Probab=23.98 E-value=8.5e+02 Score=25.52 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSG-----TKHDAACNLLDAANCFKKTDNEAAIDCLSKAIV 101 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~-----~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~ 101 (320)
.|+|++|+.+|..| |+|+.|+..-.+.+.-..... +.+.....-..+..+|......-+...+. ...
T Consensus 635 ~G~~~~sI~LY~la-------g~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~-t~~ 706 (835)
T KOG2168|consen 635 DGLFEDAILLYHLA-------GDYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVK-TLS 706 (835)
T ss_pred cCCHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHH-HHH
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHH
Q psy9376 102 IYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAH 162 (320)
Q Consensus 102 l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~ 162 (320)
+... +..+=+.|.. |++++|....+..--+.............+.+++.
T Consensus 707 lLl~----------~~~~f~~y~~--~~~e~aL~~le~l~LiP~~~~~v~~~~~~~~~~~~ 755 (835)
T KOG2168|consen 707 LLLD----------LVSFFDLYHN--GEWEEALSILEHLDLIPLDPLSVDEIVANFRNLAD 755 (835)
T ss_pred HHHH----------HHHHHHHHhh--hHHHHHHHHHHHHhccCCChhhhhHHHHHHHhcch
No 445
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=5.5e+02 Score=23.29 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~ 179 (320)
.-..+|..|... |+++.|.+.+-..+..-+...+ ..+-..+-+++...|.-+.+...|++
T Consensus 238 aa~~lA~~~~~~-g~~e~Ale~Ll~~l~~d~~~~d----~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 238 AALALADQLHLV-GRNEAALEHLLALLRRDRGFED----GEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccccC----cHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 467788888887 9999998887655554333322 34555666666666654445555544
No 446
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=23.59 E-value=4.9e+02 Score=22.60 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHh---------cC-CHHHHHHHHHHHHHHHHHcCC
Q psy9376 72 DAACNLLDAANCFK---------KT-DNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 72 ~aa~~~~~aa~~y~---------~~-~~~eA~~~~~kA~~l~~~~~~ 108 (320)
-.|..|.-+|..+. .. ++..|+.++++|..++++.|-
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 35677777888773 22 688999999999999998885
No 447
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=22.90 E-value=4.1e+02 Score=21.47 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
++++++...+.-.--+.|+.. ..-.--|.+++..|++++|+.+++++......
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLK------ELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCcc------ccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 788888777765555555542 34445688899999999999999999865544
No 448
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.64 E-value=1.4e+02 Score=22.46 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
++-.+|.+|.+. |+.++|+.-|+.--.+||+.+
T Consensus 74 ~HAhLGlLys~~-G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 74 YHAHLGLLYSNS-GKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHHHHhhc-CChHHHHHHHHHhhhhCccch
Confidence 688999999997 999999999999999999864
No 449
>KOG0991|consensus
Probab=22.59 E-value=5.5e+02 Score=22.77 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHhCCCccC-cHHH----------HHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHH
Q psy9376 209 DVINAHNAIDRYKTIYPAFQD-SREY----------KLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKK 277 (320)
Q Consensus 209 d~~~~~~A~~~y~~~~~~f~~-s~e~----------~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~ 277 (320)
..|+-++|++..+.-+.+|.. +.|+ .++..++.++. ..++++|++.+.++-++.---..|...+++
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~---~~~~~~A~~il~~lw~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL---KRNIDEALKILAELWKLGYSPEDIITTLFR 280 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH---hccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468888999999887777764 1222 34455555553 568999999999987777777778877877
Q ss_pred hhcCCCCCchhhhchh-HHHhHHHHHHHHhH-HHHHHHHHh
Q psy9376 278 QVGRTSLDSSLLKYSA-KEYFFRAALCHLCI-DVINAYTQY 316 (320)
Q Consensus 278 ~~~~~~~~~~l~~~~~-~~y~~~a~~c~~~~-~~~~~~~~~ 316 (320)
.+-.-. +.-++ -+|...-|+||+-+ +-|+.+=+.
T Consensus 281 v~K~~~-----~~E~~rlE~ikeig~thmrI~eGv~s~LQl 316 (333)
T KOG0991|consen 281 VVKNMD-----VAESLRLEFIKEIGLTHMRILEGVNSLLQL 316 (333)
T ss_pred HHHhcc-----HHHHHHHHHHHHHhhHHhHHHhhHhHHHHH
Confidence 665322 33333 47888999999988 666655443
No 450
>KOG0546|consensus
Probab=22.41 E-value=1.6e+02 Score=27.27 Aligned_cols=109 Identities=14% Similarity=-0.003 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hH-----------HHHHHHHHHHHHHhcC-CHHHHHHHH
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGT--KH-----------DAACNLLDAANCFKKT-DNEAAIDCL 96 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~--~~-----------~aa~~~~~aa~~y~~~-~~~eA~~~~ 96 (320)
.++.+--...|+.....++++.|..-|.++..-...... .. ..-..+.+++.+-.+. ++..|+..-
T Consensus 219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~ 298 (372)
T KOG0546|consen 219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRT 298 (372)
T ss_pred hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecc
Confidence 344444455677777788888888888888776531100 00 0111222233333333 333333333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 97 SKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 97 ~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
..++. .-...+..+...+..+... .++++|++.++.+....+.
T Consensus 299 ~~~~~------~~~s~tka~~Rr~~~~~~~-~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 299 NEALR------DERSKTKAHYRRGQAYKLL-KNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ccccc------cChhhCcHHHHHHhHHHhh-hchhhhHHHHHHhhccCcc
Confidence 33332 1122233566666666664 6677777776666655444
No 451
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=22.31 E-value=3.6e+02 Score=20.60 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLS 97 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~ 97 (320)
.+.+...+.+.+....-. + ........+..+|.+.++++.++++.
T Consensus 20 ~~~~~~l~~yLe~~~~~~-----~-~~~~~~~~li~ly~~~~~~~ll~~l~ 64 (140)
T smart00299 20 RNLLEELIPYLESALKLN-----S-ENPALQTKLIELYAKYDPQKEIERLD 64 (140)
T ss_pred CCcHHHHHHHHHHHHccC-----c-cchhHHHHHHHHHHHHCHHHHHHHHH
Confidence 345666666666555331 1 22334555556665556666666655
No 452
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=21.93 E-value=1.7e+02 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHhhcc------CCchHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHH
Q psy9376 133 AVEHYEQAATYFKGE------ESNSSANKCLLKVAHHAA-----LLQNYNKAIQIYEEVG 181 (320)
Q Consensus 133 Ai~~y~kA~~~~~~~------~~~~~a~~~~~~la~~~~-----~~g~y~~Ai~~y~~~~ 181 (320)
|+.+..+|+++.+.. ..|...++++..+|.++- +-+-|.+|.+++.++.
T Consensus 330 a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN 389 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN 389 (404)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 444455555444332 223444444455554442 1112555555555554
No 453
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.71 E-value=2.5e+02 Score=18.58 Aligned_cols=26 Identities=23% Similarity=0.315 Sum_probs=19.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
..+..-+..+|++++|.++..++...
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455577999999999999988653
No 454
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=4.1e+02 Score=20.92 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMK 66 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~ 66 (320)
|+.+++.+..| ...-..+++.++.+...||.+|...
T Consensus 28 yeg~l~~l~~A-~~aie~~~i~~k~~~i~ka~~Ii~e 63 (132)
T COG1516 28 YEGALKFLKRA-KEAIEQEDIEEKNESIDKAIDIITE 63 (132)
T ss_pred HHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45555555554 3344567888888888888877653
No 455
>KOG4563|consensus
Probab=20.09 E-value=4.3e+02 Score=24.77 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC--CchHHHHHHHHHHHHHHHccCHHHHH
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE--SNSSANKCLLKVAHHAALLQNYNKAI 174 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~--~~~~a~~~~~~la~~~~~~g~y~~Ai 174 (320)
...-+...|.-...+ +++++|+..|..|..+..... .+....+.+.-.|..+..+++.+..+
T Consensus 40 ~~e~lv~~G~~~~~~-~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 40 TLEELVQAGRRALCN-NDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHhhhHHHhc-ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334466667666666 899999999999988765542 23345667777788887777766554
Done!