Query psy9376
Match_columns 320
No_of_seqs 286 out of 1544
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 17:31:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qqe_A Vesicular transport pro 100.0 1.3E-37 4.4E-42 279.3 29.3 278 2-282 3-287 (292)
2 2ifu_A Gamma-SNAP; membrane fu 100.0 9.2E-31 3.2E-35 236.2 30.0 264 3-276 10-275 (307)
3 3ulq_A Response regulator aspa 99.8 1.6E-18 5.6E-23 159.9 27.5 226 27-263 116-367 (383)
4 3q15_A PSP28, response regulat 99.8 5.3E-18 1.8E-22 156.5 25.1 227 26-263 113-364 (378)
5 1qqe_A Vesicular transport pro 99.8 1.2E-17 4.1E-22 149.0 24.0 187 37-228 80-271 (292)
6 3sf4_A G-protein-signaling mod 99.8 1.2E-16 4.2E-21 146.6 29.4 244 27-276 60-354 (406)
7 3sf4_A G-protein-signaling mod 99.8 9.2E-17 3.1E-21 147.5 28.4 232 27-264 22-296 (406)
8 3ro2_A PINS homolog, G-protein 99.8 1.4E-16 4.6E-21 141.7 28.3 232 27-264 18-292 (338)
9 4a1s_A PINS, partner of inscut 99.8 1.5E-16 5.1E-21 147.2 27.5 232 27-264 61-332 (411)
10 4a1s_A PINS, partner of inscut 99.8 2.7E-16 9.1E-21 145.5 28.0 244 27-276 99-384 (411)
11 2ifu_A Gamma-SNAP; membrane fu 99.8 3.5E-17 1.2E-21 147.1 20.9 157 29-187 71-227 (307)
12 3ro2_A PINS homolog, G-protein 99.8 3.1E-16 1E-20 139.4 26.7 232 27-264 56-332 (338)
13 3ulq_A Response regulator aspa 99.8 5.3E-16 1.8E-20 143.0 28.5 217 40-262 109-333 (383)
14 3q15_A PSP28, response regulat 99.8 1.3E-15 4.4E-20 140.4 30.3 219 37-262 104-330 (378)
15 3uq3_A Heat shock protein STI1 99.7 1.2E-15 4.1E-20 131.2 25.2 223 33-277 4-255 (258)
16 3ro3_A PINS homolog, G-protein 99.7 1.2E-15 3.9E-20 121.4 23.1 156 27-183 2-158 (164)
17 3nf1_A KLC 1, kinesin light ch 99.7 8.1E-16 2.8E-20 136.0 23.1 155 28-183 21-182 (311)
18 3edt_B KLC 2, kinesin light ch 99.7 9.8E-16 3.3E-20 133.2 23.0 227 32-263 41-280 (283)
19 1w3b_A UDP-N-acetylglucosamine 99.7 3.9E-16 1.3E-20 143.7 21.2 221 27-274 114-378 (388)
20 3u4t_A TPR repeat-containing p 99.7 6E-16 2E-20 134.9 18.8 230 26-280 15-266 (272)
21 1w3b_A UDP-N-acetylglucosamine 99.7 1.2E-15 4.2E-20 140.3 20.2 215 27-274 80-310 (388)
22 2h6f_A Protein farnesyltransfe 99.7 8.6E-16 2.9E-20 142.6 19.0 227 27-280 110-364 (382)
23 3gw4_A Uncharacterized protein 99.7 1.1E-14 3.8E-19 121.1 23.9 151 33-184 25-177 (203)
24 4eqf_A PEX5-related protein; a 99.7 8.7E-16 3E-20 140.0 17.6 216 27-267 78-313 (365)
25 3vtx_A MAMA; tetratricopeptide 99.7 2.2E-15 7.6E-20 124.1 17.9 172 33-270 4-176 (184)
26 4i17_A Hypothetical protein; T 99.7 4.8E-15 1.6E-19 126.4 19.8 210 35-276 8-221 (228)
27 3hym_B Cell division cycle pro 99.7 3E-15 1E-19 133.5 19.2 227 27-279 69-314 (330)
28 2pl2_A Hypothetical conserved 99.7 1.7E-15 6E-20 129.1 15.1 193 36-262 7-212 (217)
29 3nf1_A KLC 1, kinesin light ch 99.6 8.3E-14 2.8E-18 123.0 24.9 221 41-266 76-309 (311)
30 3ieg_A DNAJ homolog subfamily 99.6 3.7E-14 1.3E-18 127.5 22.8 175 81-274 127-311 (359)
31 1fch_A Peroxisomal targeting s 99.6 4.5E-15 1.6E-19 134.8 15.6 203 39-268 69-318 (368)
32 2ho1_A Type 4 fimbrial biogene 99.6 2.9E-14 9.9E-19 122.8 19.8 215 27-272 30-246 (252)
33 3ieg_A DNAJ homolog subfamily 99.6 2.5E-14 8.7E-19 128.6 20.1 223 27-271 16-270 (359)
34 2qfc_A PLCR protein; TPR, HTH, 99.6 1.5E-14 5.1E-19 128.7 17.8 157 26-183 87-266 (293)
35 3u3w_A Transcriptional activat 99.6 2.9E-14 9.8E-19 126.9 19.5 156 27-183 88-266 (293)
36 1hz4_A MALT regulatory protein 99.6 4.2E-13 1.4E-17 122.7 27.8 228 27-264 27-282 (373)
37 2pl2_A Hypothetical conserved 99.6 1.1E-14 3.6E-19 124.2 15.8 169 27-224 18-212 (217)
38 4b4t_Q 26S proteasome regulato 99.6 1.9E-13 6.7E-18 127.2 25.6 144 40-184 61-205 (434)
39 2h6f_A Protein farnesyltransfe 99.6 1.8E-14 6.3E-19 133.6 18.1 214 32-275 95-315 (382)
40 3uq3_A Heat shock protein STI1 99.6 1.5E-13 5.1E-18 118.0 22.7 184 27-226 18-236 (258)
41 3hym_B Cell division cycle pro 99.6 4.2E-14 1.4E-18 125.9 19.8 215 27-274 35-275 (330)
42 2y4t_A DNAJ homolog subfamily 99.6 1.6E-13 5.6E-18 128.0 24.0 171 88-274 158-334 (450)
43 4eqf_A PEX5-related protein; a 99.6 7.7E-15 2.6E-19 133.7 14.4 213 37-276 68-288 (365)
44 2y4t_A DNAJ homolog subfamily 99.6 6.2E-14 2.1E-18 130.9 20.9 227 27-276 107-370 (450)
45 3qky_A Outer membrane assembly 99.6 1.1E-13 3.8E-18 120.6 20.8 191 33-235 15-233 (261)
46 3vtx_A MAMA; tetratricopeptide 99.6 2.4E-14 8.2E-19 117.8 15.7 143 27-188 18-175 (184)
47 3fp2_A TPR repeat-containing p 99.6 4.5E-14 1.6E-18 134.7 19.5 220 27-273 256-500 (537)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.5E-14 2.2E-18 121.7 18.4 202 33-266 42-246 (275)
49 4gyw_A UDP-N-acetylglucosamine 99.6 2.3E-14 7.9E-19 143.1 17.2 137 34-189 9-146 (723)
50 2xpi_A Anaphase-promoting comp 99.6 9.3E-14 3.2E-18 134.6 20.8 213 41-279 380-594 (597)
51 3cv0_A Peroxisome targeting si 99.6 6.6E-14 2.2E-18 124.5 18.3 208 27-267 34-272 (327)
52 3u4t_A TPR repeat-containing p 99.6 1.2E-14 4.2E-19 126.4 12.6 198 38-263 7-207 (272)
53 4g1t_A Interferon-induced prot 99.6 6.1E-14 2.1E-18 132.0 18.2 225 34-276 51-288 (472)
54 1fch_A Peroxisomal targeting s 99.6 9.5E-14 3.2E-18 126.0 17.4 210 27-263 77-358 (368)
55 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-14 6.3E-19 122.9 11.9 212 31-275 20-233 (243)
56 1ouv_A Conserved hypothetical 99.6 2.9E-13 9.8E-18 118.5 19.7 210 27-274 19-261 (273)
57 2vq2_A PILW, putative fimbrial 99.6 3.4E-13 1.1E-17 113.3 19.2 209 33-271 7-218 (225)
58 2qfc_A PLCR protein; TPR, HTH, 99.6 3.4E-13 1.2E-17 119.8 20.1 149 36-185 77-227 (293)
59 3urz_A Uncharacterized protein 99.5 5.8E-13 2E-17 112.6 19.1 187 34-268 4-190 (208)
60 4gyw_A UDP-N-acetylglucosamine 99.5 5.6E-14 1.9E-18 140.3 14.5 140 27-185 22-176 (723)
61 3edt_B KLC 2, kinesin light ch 99.5 1.2E-12 4.1E-17 113.5 21.3 136 47-183 14-156 (283)
62 4g1t_A Interferon-induced prot 99.5 5.5E-14 1.9E-18 132.4 13.5 215 54-276 31-254 (472)
63 3u3w_A Transcriptional activat 99.5 3.8E-13 1.3E-17 119.5 18.3 151 35-186 76-228 (293)
64 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.2E-13 1.1E-17 117.3 17.0 191 47-267 18-209 (275)
65 2xpi_A Anaphase-promoting comp 99.5 5.6E-13 1.9E-17 129.0 20.2 175 74-273 373-554 (597)
66 3fp2_A TPR repeat-containing p 99.5 7.4E-13 2.5E-17 126.3 20.6 211 39-278 248-471 (537)
67 2gw1_A Mitochondrial precursor 99.5 1.9E-13 6.7E-18 129.3 15.3 222 27-275 250-489 (514)
68 3qky_A Outer membrane assembly 99.5 1.8E-12 6E-17 112.9 20.2 156 27-189 28-230 (261)
69 1hz4_A MALT regulatory protein 99.5 4.4E-11 1.5E-15 109.2 30.4 227 34-266 14-246 (373)
70 4ga2_A E3 SUMO-protein ligase 99.5 1.6E-14 5.4E-19 116.0 6.3 131 40-189 3-135 (150)
71 3ro3_A PINS homolog, G-protein 99.5 5.7E-12 1.9E-16 99.7 20.7 118 67-185 2-120 (164)
72 4i17_A Hypothetical protein; T 99.5 4.6E-13 1.6E-17 114.0 14.5 133 27-170 20-169 (228)
73 3urz_A Uncharacterized protein 99.5 2.7E-12 9.3E-17 108.4 19.0 180 26-238 16-198 (208)
74 4gcn_A Protein STI-1; structur 99.5 1.6E-12 5.4E-17 101.2 16.2 111 29-146 3-115 (127)
75 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-12 5.6E-17 111.7 17.7 181 27-233 50-245 (252)
76 2gw1_A Mitochondrial precursor 99.5 7.9E-13 2.7E-17 125.1 17.0 216 27-276 202-456 (514)
77 2q7f_A YRRB protein; TPR, prot 99.5 8.7E-13 3E-17 112.4 15.6 180 27-234 36-230 (243)
78 4abn_A Tetratricopeptide repea 99.5 4E-13 1.4E-17 128.0 14.0 190 39-262 107-319 (474)
79 4gcn_A Protein STI-1; structur 99.5 7.2E-13 2.5E-17 103.2 12.9 111 71-188 5-117 (127)
80 3gw4_A Uncharacterized protein 99.5 3.2E-12 1.1E-16 106.0 17.7 137 27-164 39-197 (203)
81 2vq2_A PILW, putative fimbrial 99.5 7.1E-12 2.4E-16 105.1 19.8 181 27-233 21-218 (225)
82 1ouv_A Conserved hypothetical 99.5 6.7E-12 2.3E-16 109.7 19.8 204 36-277 8-226 (273)
83 4abn_A Tetratricopeptide repea 99.5 2.4E-12 8.3E-17 122.6 18.3 197 53-275 80-298 (474)
84 3cv0_A Peroxisome targeting si 99.4 5.4E-13 1.8E-17 118.6 12.2 222 28-276 15-247 (327)
85 2yhc_A BAMD, UPF0169 lipoprote 99.4 4.7E-12 1.6E-16 108.1 16.9 154 27-187 17-217 (225)
86 1hh8_A P67PHOX, NCF-2, neutrop 99.4 7.3E-12 2.5E-16 105.0 16.6 141 30-187 3-154 (213)
87 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.1E-11 3.9E-16 105.7 18.1 178 39-229 9-216 (225)
88 4ga2_A E3 SUMO-protein ligase 99.4 7.5E-13 2.6E-17 106.1 9.6 124 27-169 10-149 (150)
89 3mkr_A Coatomer subunit epsilo 99.4 9.3E-12 3.2E-16 110.9 17.0 199 41-277 41-242 (291)
90 3as5_A MAMA; tetratricopeptide 99.4 4.2E-12 1.4E-16 102.9 13.4 139 30-187 4-143 (186)
91 4b4t_Q 26S proteasome regulato 99.4 2.3E-11 7.8E-16 113.1 20.0 214 43-262 13-243 (434)
92 4gco_A Protein STI-1; structur 99.4 3.6E-12 1.2E-16 99.1 12.1 105 72-189 11-116 (126)
93 4gco_A Protein STI-1; structur 99.4 3.6E-12 1.2E-16 99.1 12.0 115 29-163 9-124 (126)
94 3as5_A MAMA; tetratricopeptide 99.4 6.6E-12 2.3E-16 101.8 14.0 143 27-188 21-178 (186)
95 3gyz_A Chaperone protein IPGC; 99.4 3.9E-13 1.3E-17 108.3 6.5 106 70-188 32-138 (151)
96 2pzi_A Probable serine/threoni 99.3 6.5E-12 2.2E-16 124.9 13.8 177 26-229 403-608 (681)
97 3mkr_A Coatomer subunit epsilo 99.3 1.8E-10 6E-15 102.6 20.0 179 41-259 108-289 (291)
98 2vgx_A Chaperone SYCD; alterna 99.3 8.8E-12 3E-16 99.7 8.8 116 54-188 7-123 (148)
99 2fo7_A Synthetic consensus TPR 99.3 8.5E-11 2.9E-15 89.7 13.7 131 36-185 3-134 (136)
100 2xm6_A Protein corresponding t 99.3 9.7E-10 3.3E-14 104.5 23.5 204 27-266 56-290 (490)
101 2hr2_A Hypothetical protein; a 99.3 9.7E-11 3.3E-15 94.4 13.9 115 73-188 10-136 (159)
102 2hr2_A Hypothetical protein; a 99.3 6E-11 2.1E-15 95.6 12.5 117 31-149 9-137 (159)
103 1p5q_A FKBP52, FK506-binding p 99.3 8.7E-11 3E-15 106.8 15.1 137 33-182 146-293 (336)
104 2vsy_A XCC0866; transferase, g 99.3 2.9E-11 1E-15 117.3 12.7 133 36-187 25-161 (568)
105 2pzi_A Probable serine/threoni 99.3 3.4E-11 1.2E-15 119.7 13.4 204 45-271 402-612 (681)
106 1a17_A Serine/threonine protei 99.3 1.3E-10 4.6E-15 92.8 14.3 136 31-183 10-146 (166)
107 1xi4_A Clathrin heavy chain; a 99.3 4.5E-10 1.5E-14 116.4 21.3 223 27-284 1062-1329(1630)
108 2xm6_A Protein corresponding t 99.3 7.5E-10 2.6E-14 105.3 21.7 132 27-183 92-252 (490)
109 3gyz_A Chaperone protein IPGC; 99.2 5.7E-11 1.9E-15 95.5 11.4 105 29-147 32-137 (151)
110 3upv_A Heat shock protein STI1 99.2 1.3E-10 4.5E-15 89.3 12.2 96 37-145 7-103 (126)
111 3n71_A Histone lysine methyltr 99.2 6.7E-10 2.3E-14 106.0 19.5 143 41-184 316-465 (490)
112 3sz7_A HSC70 cochaperone (SGT) 99.2 2.5E-10 8.5E-15 92.1 14.1 106 70-188 7-113 (164)
113 1a17_A Serine/threonine protei 99.2 6.3E-10 2.2E-14 88.8 16.3 104 72-188 11-115 (166)
114 2ond_A Cleavage stimulation fa 99.2 3.2E-10 1.1E-14 101.3 15.7 186 51-267 81-273 (308)
115 3rkv_A Putative peptidylprolyl 99.2 1.5E-10 5.3E-15 93.1 11.8 108 32-146 9-129 (162)
116 3upv_A Heat shock protein STI1 99.2 2.2E-10 7.5E-15 88.0 12.1 99 73-184 3-102 (126)
117 3rjv_A Putative SEL1 repeat pr 99.2 9.4E-10 3.2E-14 93.0 16.9 126 37-183 21-158 (212)
118 1p5q_A FKBP52, FK506-binding p 99.2 3.4E-11 1.2E-15 109.5 8.2 129 47-188 126-264 (336)
119 2c2l_A CHIP, carboxy terminus 99.2 2.9E-10 9.9E-15 100.6 13.9 100 75-187 5-105 (281)
120 2vsy_A XCC0866; transferase, g 99.2 7.2E-11 2.5E-15 114.5 10.6 157 47-229 2-160 (568)
121 2ond_A Cleavage stimulation fa 99.2 4.4E-10 1.5E-14 100.4 14.8 193 51-273 33-245 (308)
122 2xcb_A PCRH, regulatory protei 99.2 3.3E-10 1.1E-14 89.3 12.0 105 71-188 15-120 (142)
123 3rkv_A Putative peptidylprolyl 99.2 7E-10 2.4E-14 89.3 14.1 110 72-188 9-131 (162)
124 1xi4_A Clathrin heavy chain; a 99.2 6.5E-09 2.2E-13 107.9 24.2 247 27-301 1089-1415(1630)
125 2fbn_A 70 kDa peptidylprolyl i 99.1 2.6E-10 8.9E-15 95.0 11.0 136 32-180 36-183 (198)
126 2r5s_A Uncharacterized protein 99.1 1.1E-10 3.7E-15 95.6 8.0 138 27-182 19-172 (176)
127 3rjv_A Putative SEL1 repeat pr 99.1 2.2E-09 7.5E-14 90.7 15.9 137 27-184 31-198 (212)
128 1hh8_A P67PHOX, NCF-2, neutrop 99.1 6.4E-10 2.2E-14 93.0 12.3 114 27-147 19-154 (213)
129 2e2e_A Formate-dependent nitri 99.1 1.8E-10 6E-15 94.0 8.4 124 46-188 22-149 (177)
130 3sz7_A HSC70 cochaperone (SGT) 99.1 9.7E-10 3.3E-14 88.6 12.4 106 31-149 8-114 (164)
131 2vyi_A SGTA protein; chaperone 99.1 1.2E-09 4.2E-14 83.0 12.3 123 29-170 7-130 (131)
132 2fbn_A 70 kDa peptidylprolyl i 99.1 6.7E-10 2.3E-14 92.4 10.8 132 44-188 14-156 (198)
133 1ihg_A Cyclophilin 40; ppiase 99.1 1.2E-09 4.2E-14 100.6 13.5 129 34-175 223-362 (370)
134 1elr_A TPR2A-domain of HOP; HO 99.1 4.7E-09 1.6E-13 79.8 14.6 121 33-167 3-125 (131)
135 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1.7E-09 5.8E-14 102.4 14.3 136 32-180 266-412 (457)
136 2vgx_A Chaperone SYCD; alterna 99.1 3E-09 1E-13 84.8 13.4 103 33-148 20-123 (148)
137 1elr_A TPR2A-domain of HOP; HO 99.1 2.4E-09 8.3E-14 81.4 12.3 107 73-186 3-111 (131)
138 2xcb_A PCRH, regulatory protei 99.1 4.5E-09 1.5E-13 82.7 14.2 106 29-148 14-120 (142)
139 1hxi_A PEX5, peroxisome target 99.0 7.9E-10 2.7E-14 85.0 9.4 97 77-186 20-117 (121)
140 3q49_B STIP1 homology and U bo 99.0 2.1E-09 7E-14 83.3 11.6 101 73-186 8-109 (137)
141 2lni_A Stress-induced-phosphop 99.0 1.1E-09 3.7E-14 83.9 9.7 119 32-169 14-133 (133)
142 3qou_A Protein YBBN; thioredox 99.0 7.1E-10 2.4E-14 98.3 9.6 131 38-187 121-252 (287)
143 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 1.3E-09 4.3E-14 103.3 11.3 129 47-188 247-385 (457)
144 3qou_A Protein YBBN; thioredox 99.0 2.4E-09 8.1E-14 94.9 11.7 164 75-263 118-283 (287)
145 2r5s_A Uncharacterized protein 99.0 1.3E-09 4.6E-14 89.0 9.2 130 37-186 9-140 (176)
146 2xev_A YBGF; tetratricopeptide 99.0 3.1E-09 1E-13 81.4 10.7 106 77-189 5-111 (129)
147 2vyi_A SGTA protein; chaperone 99.0 1.2E-08 4.2E-13 77.3 13.9 106 70-188 8-114 (131)
148 2c2l_A CHIP, carboxy terminus 99.0 1.5E-09 5E-14 96.0 9.8 101 35-148 5-106 (281)
149 1elw_A TPR1-domain of HOP; HOP 99.0 4.7E-09 1.6E-13 78.2 11.2 102 74-188 4-106 (118)
150 2lni_A Stress-induced-phosphop 99.0 4.3E-09 1.5E-13 80.5 10.9 104 72-188 14-118 (133)
151 1na0_A Designed protein CTPR3; 99.0 9E-09 3.1E-13 77.4 12.1 97 36-145 11-108 (125)
152 3k9i_A BH0479 protein; putativ 99.0 1.8E-09 6.3E-14 82.0 8.0 88 88-188 5-95 (117)
153 2if4_A ATFKBP42; FKBP-like, al 98.9 1.4E-09 4.8E-14 98.9 8.3 142 33-187 178-332 (338)
154 3q49_B STIP1 homology and U bo 98.9 6.8E-09 2.3E-13 80.3 11.1 101 34-147 9-110 (137)
155 2fo7_A Synthetic consensus TPR 98.9 2.2E-08 7.7E-13 75.9 13.5 127 75-223 2-129 (136)
156 1b89_A Protein (clathrin heavy 98.9 4.3E-10 1.5E-14 104.9 4.4 129 115-280 124-252 (449)
157 1na0_A Designed protein CTPR3; 98.9 1.2E-08 4.1E-13 76.7 11.6 105 71-188 6-111 (125)
158 2kck_A TPR repeat; tetratricop 98.9 1.7E-09 5.7E-14 80.1 5.8 101 75-186 7-109 (112)
159 3e4b_A ALGK; tetratricopeptide 98.9 4.9E-08 1.7E-12 92.1 16.9 189 39-267 181-390 (452)
160 1hxi_A PEX5, peroxisome target 98.9 4.2E-09 1.4E-13 80.9 7.8 97 38-147 21-118 (121)
161 1ihg_A Cyclophilin 40; ppiase 98.9 6.2E-08 2.1E-12 89.1 17.0 109 73-188 222-341 (370)
162 1elw_A TPR1-domain of HOP; HOP 98.9 2.1E-08 7.1E-13 74.6 11.4 110 35-163 5-115 (118)
163 2e2e_A Formate-dependent nitri 98.9 6.9E-09 2.4E-13 84.3 9.3 111 26-149 22-150 (177)
164 1wao_1 Serine/threonine protei 98.9 9E-10 3.1E-14 104.9 4.3 120 40-178 12-134 (477)
165 2l6j_A TPR repeat-containing p 98.9 1E-09 3.5E-14 81.7 3.4 99 74-179 4-103 (111)
166 2xev_A YBGF; tetratricopeptide 98.9 3.3E-08 1.1E-12 75.5 12.0 102 39-147 7-109 (129)
167 1wao_1 Serine/threonine protei 98.9 2.4E-09 8.1E-14 102.0 6.4 129 73-221 5-134 (477)
168 2dba_A Smooth muscle cell asso 98.8 4E-08 1.4E-12 76.5 12.4 104 74-187 28-132 (148)
169 3n71_A Histone lysine methyltr 98.8 2.9E-07 9.9E-12 87.7 19.5 97 86-183 322-422 (490)
170 2dba_A Smooth muscle cell asso 98.8 2.4E-08 8.2E-13 77.8 10.1 104 34-147 28-132 (148)
171 2ooe_A Cleavage stimulation fa 98.8 3E-08 1E-12 95.1 12.2 186 51-266 255-456 (530)
172 1b89_A Protein (clathrin heavy 98.8 5.7E-08 2E-12 90.6 13.3 198 27-266 45-274 (449)
173 3k9i_A BH0479 protein; putativ 98.8 9.6E-09 3.3E-13 78.0 6.7 91 47-147 3-94 (117)
174 1zu2_A Mitochondrial import re 98.8 3.7E-09 1.3E-13 84.9 4.2 89 46-147 14-124 (158)
175 3qww_A SET and MYND domain-con 98.7 2.1E-07 7.3E-12 87.3 15.8 102 45-147 309-415 (433)
176 3e4b_A ALGK; tetratricopeptide 98.7 1.9E-07 6.3E-12 88.1 15.5 198 29-267 194-424 (452)
177 3dss_A Geranylgeranyl transfer 98.7 1.2E-06 4.2E-11 79.0 20.1 225 27-277 42-317 (331)
178 2if4_A ATFKBP42; FKBP-like, al 98.7 1.5E-08 5.1E-13 92.0 7.5 110 72-188 177-298 (338)
179 3qwp_A SET and MYND domain-con 98.7 1.8E-07 6.3E-12 87.7 15.0 134 32-167 286-426 (429)
180 1klx_A Cysteine rich protein B 98.7 1.4E-07 4.7E-12 74.2 12.0 110 48-184 9-127 (138)
181 3dra_A Protein farnesyltransfe 98.7 3.8E-07 1.3E-11 81.6 16.0 219 28-279 47-303 (306)
182 2ooe_A Cleavage stimulation fa 98.7 3.2E-07 1.1E-11 87.9 16.6 136 32-185 304-456 (530)
183 3qww_A SET and MYND domain-con 98.7 1.3E-07 4.4E-12 88.8 12.9 95 88-183 313-411 (433)
184 1zu2_A Mitochondrial import re 98.7 2.4E-08 8.1E-13 80.2 6.3 88 88-188 17-125 (158)
185 2kat_A Uncharacterized protein 98.6 1.1E-07 3.7E-12 71.5 7.7 83 91-186 3-85 (115)
186 1na3_A Designed protein CTPR2; 98.6 2.5E-07 8.7E-12 65.8 8.7 82 73-167 8-90 (91)
187 2l6j_A TPR repeat-containing p 98.6 1.7E-08 5.8E-13 74.9 2.3 98 35-139 5-103 (111)
188 2kck_A TPR repeat; tetratricop 98.5 1.1E-07 3.8E-12 70.0 6.1 100 37-147 9-110 (112)
189 4f3v_A ESX-1 secretion system 98.5 6.1E-07 2.1E-11 79.0 11.6 131 41-186 109-240 (282)
190 3qwp_A SET and MYND domain-con 98.5 6.9E-07 2.4E-11 83.7 12.6 105 78-183 292-400 (429)
191 2kat_A Uncharacterized protein 98.5 3.1E-07 1E-11 69.0 7.7 85 52-149 3-88 (115)
192 4f3v_A ESX-1 secretion system 98.5 2.9E-07 1E-11 81.1 8.2 205 46-276 18-248 (282)
193 3ma5_A Tetratricopeptide repea 98.5 9.6E-07 3.3E-11 64.9 9.6 71 73-150 6-77 (100)
194 1klx_A Cysteine rich protein B 98.5 1.1E-06 3.9E-11 68.8 10.3 100 27-143 8-126 (138)
195 3ma5_A Tetratricopeptide repea 98.4 1.3E-06 4.6E-11 64.1 9.2 67 113-186 7-73 (100)
196 3dss_A Geranylgeranyl transfer 98.4 1.4E-05 4.9E-10 72.0 17.5 208 45-276 40-279 (331)
197 1na3_A Designed protein CTPR2; 98.4 4.5E-06 1.5E-10 59.1 11.2 71 111-188 7-77 (91)
198 2kc7_A BFR218_protein; tetratr 98.3 5.8E-06 2E-10 59.9 10.3 65 116-187 3-68 (99)
199 1dce_A Protein (RAB geranylger 98.2 7.8E-06 2.7E-10 79.3 12.1 143 28-189 43-227 (567)
200 2v5f_A Prolyl 4-hydroxylase su 98.2 1E-05 3.5E-10 60.0 9.9 75 114-189 6-81 (104)
201 3lpz_A GET4 (YOR164C homolog); 98.2 0.0011 3.9E-08 59.2 24.6 240 27-289 25-305 (336)
202 1dce_A Protein (RAB geranylger 98.2 2.9E-05 1E-09 75.3 15.6 172 88-281 44-238 (567)
203 3q7a_A Farnesyltransferase alp 98.2 2E-05 6.9E-10 71.4 13.4 144 27-189 67-243 (349)
204 3ly7_A Transcriptional activat 98.2 1.8E-05 6E-10 72.0 12.5 149 28-190 191-346 (372)
205 3mv2_B Coatomer subunit epsilo 98.2 3.9E-05 1.3E-09 68.4 14.5 143 115-273 102-259 (310)
206 2kc7_A BFR218_protein; tetratr 98.1 5.5E-06 1.9E-10 60.0 5.7 87 80-187 6-94 (99)
207 3dra_A Protein farnesyltransfe 98.0 0.00047 1.6E-08 61.4 18.8 207 27-264 29-250 (306)
208 3mv2_B Coatomer subunit epsilo 98.0 0.00031 1.1E-08 62.5 16.8 196 39-259 105-307 (310)
209 2wpv_A GET4, UPF0363 protein Y 98.0 0.0055 1.9E-07 54.4 24.8 225 27-278 26-287 (312)
210 3txn_A 26S proteasome regulato 98.0 0.011 3.8E-07 54.3 30.4 223 48-276 73-299 (394)
211 3q7a_A Farnesyltransferase alp 97.9 0.00021 7.2E-09 64.8 14.3 181 82-280 62-253 (349)
212 3ffl_A Anaphase-promoting comp 97.6 0.0028 9.5E-08 50.7 14.8 104 77-181 24-149 (167)
213 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00072 2.5E-08 49.8 10.0 70 77-147 8-79 (104)
214 3txn_A 26S proteasome regulato 97.3 0.042 1.4E-06 50.4 20.9 185 39-229 24-213 (394)
215 4e6h_A MRNA 3'-END-processing 97.3 0.011 3.8E-07 58.3 17.8 207 41-270 350-576 (679)
216 4e6h_A MRNA 3'-END-processing 97.3 0.0046 1.6E-07 61.0 15.1 191 51-266 326-535 (679)
217 3bee_A Putative YFRE protein; 97.2 0.0021 7E-08 46.4 8.3 67 113-186 6-75 (93)
218 3ly7_A Transcriptional activat 97.0 0.012 4.2E-07 53.4 13.6 91 88-184 214-307 (372)
219 3u64_A Protein TP_0956; tetrat 97.0 0.0013 4.3E-08 57.8 6.8 89 89-186 179-272 (301)
220 3bee_A Putative YFRE protein; 97.0 0.0029 9.9E-08 45.6 7.7 65 75-146 7-75 (93)
221 1pc2_A Mitochondria fission pr 97.0 0.011 3.7E-07 46.7 11.3 72 113-189 32-106 (152)
222 3ffl_A Anaphase-promoting comp 96.9 0.043 1.5E-06 43.7 14.5 115 42-164 28-165 (167)
223 4g26_A Pentatricopeptide repea 96.4 0.081 2.8E-06 50.2 15.6 153 17-185 29-206 (501)
224 4b4t_P 26S proteasome regulato 96.4 0.29 9.8E-06 45.6 18.6 113 37-150 140-254 (445)
225 4g26_A Pentatricopeptide repea 96.2 0.11 3.7E-06 49.3 14.9 136 36-187 28-173 (501)
226 3u64_A Protein TP_0956; tetrat 96.1 0.034 1.2E-06 48.7 9.9 90 49-147 178-273 (301)
227 4b4t_R RPN7, 26S proteasome re 96.1 0.068 2.3E-06 49.7 12.5 108 73-184 130-238 (429)
228 2wpv_A GET4, UPF0363 protein Y 96.0 0.74 2.5E-05 40.7 18.9 77 68-146 27-104 (312)
229 3mkq_A Coatomer beta'-subunit; 95.9 0.47 1.6E-05 46.8 18.4 25 75-99 682-707 (814)
230 4b4t_P 26S proteasome regulato 95.8 0.55 1.9E-05 43.7 17.7 70 112-182 136-205 (445)
231 3mkq_A Coatomer beta'-subunit; 95.8 0.37 1.3E-05 47.6 17.5 63 114-181 682-750 (814)
232 1nzn_A CGI-135 protein, fissio 95.3 0.31 1.1E-05 37.0 11.3 71 114-189 36-109 (126)
233 1pc2_A Mitochondria fission pr 95.2 0.34 1.2E-05 38.0 11.6 70 73-147 31-104 (152)
234 4b4t_S RPN3, 26S proteasome re 95.1 0.26 8.8E-06 46.6 12.4 185 107-303 225-414 (523)
235 3lpz_A GET4 (YOR164C homolog); 95.0 0.83 2.9E-05 40.7 15.0 121 15-137 36-159 (336)
236 4b4t_R RPN7, 26S proteasome re 93.8 0.49 1.7E-05 43.8 11.4 104 41-148 138-242 (429)
237 4h7y_A Dual specificity protei 92.7 2.4 8.3E-05 33.1 11.7 90 90-187 36-127 (161)
238 4gns_B Protein CSD3, chitin bi 92.4 3.6 0.00012 40.8 15.5 121 47-180 261-397 (754)
239 2uy1_A Cleavage stimulation fa 92.4 1.6 5.4E-05 41.1 12.6 152 90-262 196-381 (493)
240 3o48_A Mitochondria fission 1 91.2 1.4 4.7E-05 33.7 8.6 71 113-189 40-113 (134)
241 1y8m_A FIS1; mitochondria, unk 90.8 2 6.8E-05 33.2 9.3 73 111-189 37-112 (144)
242 2uy1_A Cleavage stimulation fa 90.7 4.2 0.00014 38.1 13.6 22 42-63 221-242 (493)
243 1ya0_A SMG-7 transcript varian 90.5 0.82 2.8E-05 43.2 8.4 63 113-182 152-214 (497)
244 4h7y_A Dual specificity protei 88.9 3.9 0.00013 32.0 9.5 108 27-146 10-126 (161)
245 2yin_A DOCK2, dedicator of cyt 88.7 6.3 0.00022 36.4 12.8 46 33-78 14-59 (436)
246 1ya0_A SMG-7 transcript varian 88.4 1.1 3.6E-05 42.4 7.4 63 74-143 152-215 (497)
247 2yin_A DOCK2, dedicator of cyt 87.4 16 0.00054 33.7 14.6 116 27-165 28-144 (436)
248 2wm9_A Dedicator of cytokinesi 87.1 6.2 0.00021 36.4 11.7 114 28-144 5-138 (428)
249 3mkq_B Coatomer subunit alpha; 84.8 13 0.00046 29.6 12.3 99 47-182 18-117 (177)
250 2r17_C Vacuolar protein sortin 84.3 20 0.00068 31.2 18.7 121 27-147 92-228 (298)
251 1nzn_A CGI-135 protein, fissio 83.6 9.8 0.00034 28.6 9.2 69 74-147 35-107 (126)
252 2crb_A Nuclear receptor bindin 83.3 2.5 8.6E-05 29.8 5.3 37 109-146 11-47 (97)
253 4b4t_O 26S proteasome regulato 82.9 23 0.0008 32.0 13.4 173 83-258 85-273 (393)
254 3mkq_B Coatomer subunit alpha; 82.2 17 0.0006 28.9 12.4 89 27-140 18-115 (177)
255 2ff4_A Probable regulatory pro 82.1 25 0.00085 31.6 13.3 61 115-182 173-233 (388)
256 2w2u_A Hypothetical P60 katani 81.6 3.3 0.00011 28.7 5.5 25 121-146 27-51 (83)
257 4a5x_A MITD1, MIT domain-conta 80.9 3.4 0.00011 28.9 5.4 33 113-146 16-48 (86)
258 2ff4_A Probable regulatory pro 80.8 8 0.00027 34.9 9.4 95 45-146 126-237 (388)
259 3kae_A CDC27, possible protein 79.5 22 0.00076 28.4 10.2 93 42-146 41-146 (242)
260 2v6y_A AAA family ATPase, P60 79.5 4.2 0.00014 28.1 5.5 24 122-146 20-43 (83)
261 2v6x_A Vacuolar protein sortin 79.3 4.7 0.00016 27.9 5.8 30 116-146 16-45 (85)
262 3spa_A Mtrpol, DNA-directed RN 79.2 43 0.0015 34.6 14.7 135 75-229 128-264 (1134)
263 4gns_B Protein CSD3, chitin bi 78.1 5 0.00017 39.8 7.5 47 85-138 349-395 (754)
264 1wfd_A Hypothetical protein 15 77.5 16 0.00055 25.7 8.7 30 116-146 18-47 (93)
265 3o48_A Mitochondria fission 1 77.1 19 0.00066 27.2 8.9 68 74-147 40-111 (134)
266 2cpt_A SKD1 protein, vacuolar 75.7 4.1 0.00014 30.2 4.8 24 122-146 27-50 (117)
267 2w2u_A Hypothetical P60 katani 75.5 7.9 0.00027 26.7 5.9 35 30-65 16-50 (83)
268 2wm9_A Dedicator of cytokinesi 74.9 41 0.0014 30.8 12.5 48 134-181 88-135 (428)
269 4fhn_B Nucleoporin NUP120; pro 74.1 14 0.00046 38.6 10.0 124 40-172 848-989 (1139)
270 1y8m_A FIS1; mitochondria, unk 73.8 21 0.0007 27.5 8.4 68 74-147 39-110 (144)
271 2v6y_A AAA family ATPase, P60 73.6 9.3 0.00032 26.3 5.9 33 31-64 9-41 (83)
272 1zbp_A Hypothetical protein VP 73.2 43 0.0015 28.6 11.2 55 128-188 11-65 (273)
273 3t5x_A PCI domain-containing p 72.9 25 0.00085 28.6 9.5 98 151-262 11-109 (203)
274 3spa_A Mtrpol, DNA-directed RN 70.8 35 0.0012 35.2 11.5 74 114-190 128-201 (1134)
275 2crb_A Nuclear receptor bindin 70.3 9.3 0.00032 26.9 5.1 33 73-105 14-47 (97)
276 4b4t_S RPN3, 26S proteasome re 69.2 16 0.00055 34.4 8.2 98 69-169 226-326 (523)
277 4a5x_A MITD1, MIT domain-conta 67.4 11 0.00037 26.2 5.2 37 28-65 11-47 (86)
278 3kae_A CDC27, possible protein 67.3 47 0.0016 26.6 10.7 63 119-182 68-142 (242)
279 2cpt_A SKD1 protein, vacuolar 64.7 15 0.00052 27.1 5.8 36 29-65 14-49 (117)
280 4fhn_B Nucleoporin NUP120; pro 62.4 26 0.00089 36.5 9.2 101 78-180 846-964 (1139)
281 1wfd_A Hypothetical protein 15 62.3 28 0.00095 24.4 6.6 37 28-65 10-46 (93)
282 2v6x_A Vacuolar protein sortin 56.8 43 0.0015 22.8 6.7 37 28-65 8-44 (85)
283 3re2_A Predicted protein; meni 53.6 69 0.0024 28.7 8.8 92 89-182 231-324 (472)
284 4gq4_A Menin; tumor suppressor 52.3 71 0.0024 29.2 8.8 93 88-182 237-331 (489)
285 3re2_A Predicted protein; meni 46.3 1.3E+02 0.0044 27.0 9.4 104 58-163 239-345 (472)
286 3ax2_A Mitochondrial import re 45.6 24 0.00083 23.6 3.7 30 116-146 20-49 (73)
287 3u84_A Menin; MLL, JUND, ledgf 41.6 1.3E+02 0.0044 27.6 8.7 92 89-182 253-346 (550)
288 3eab_A Spastin; spastin, MIT, 40.9 35 0.0012 23.8 4.0 18 89-106 13-30 (89)
289 3r9m_A BRO1 domain-containing 40.3 1.2E+02 0.0041 27.1 8.7 37 29-65 110-157 (376)
290 2wb7_A PT26-6P; extra chromoso 40.0 1.8E+02 0.0061 27.1 9.6 27 115-143 490-516 (526)
291 3ax2_A Mitochondrial import re 39.5 40 0.0014 22.5 4.1 31 158-188 21-51 (73)
292 4gq2_M Nucleoporin NUP120; bet 38.3 1E+02 0.0035 31.3 8.8 66 117-183 844-926 (950)
293 3u84_A Menin; MLL, JUND, ledgf 37.2 2E+02 0.0069 26.3 9.3 102 59-162 262-366 (550)
294 1om2_A Protein (mitochondrial 35.7 45 0.0016 23.5 4.0 30 116-146 23-52 (95)
295 2dl1_A Spartin; SPG20, MIT, st 35.6 67 0.0023 23.6 5.0 17 128-144 36-52 (116)
296 2wb7_A PT26-6P; extra chromoso 34.8 2.5E+02 0.0086 26.1 9.8 49 51-104 449-499 (526)
297 4gq4_A Menin; tumor suppressor 32.8 2E+02 0.0068 26.3 8.6 86 76-163 264-352 (489)
298 4a1g_A Mitotic checkpoint seri 32.1 1.6E+02 0.0053 22.7 7.0 84 92-183 47-130 (152)
299 4gq2_M Nucleoporin NUP120; bet 32.0 3.6E+02 0.012 27.3 11.6 84 75-161 842-943 (950)
300 2ymb_A MITD1, MIT domain-conta 32.0 9.7 0.00033 32.4 0.0 38 27-65 17-54 (257)
301 3t5x_A PCI domain-containing p 31.1 2E+02 0.007 23.0 8.1 61 109-171 10-70 (203)
302 2rpa_A Katanin P60 ATPase-cont 30.2 44 0.0015 22.6 3.1 26 157-182 15-40 (78)
303 2yfv_C SCM3, KLLA0F05115P; cel 30.1 18 0.00061 23.2 1.0 26 1-26 18-43 (63)
304 1om2_A Protein (mitochondrial 29.5 71 0.0024 22.5 4.2 31 158-188 24-54 (95)
305 4ady_A RPN2, 26S proteasome re 27.6 5E+02 0.017 26.4 19.0 256 9-313 68-349 (963)
306 2o8p_A 14-3-3 domain containin 25.4 1.8E+02 0.006 24.1 6.5 55 88-143 140-197 (227)
307 3esl_A Checkpoint serine/threo 25.2 2.7E+02 0.0093 22.5 9.8 84 94-183 58-144 (202)
308 4aez_C MAD3, mitotic spindle c 24.1 2E+02 0.007 23.6 6.7 84 93-184 97-180 (223)
309 3iqc_A FLIS, flagellar protein 23.8 2.2E+02 0.0077 21.1 7.1 35 30-65 33-67 (131)
310 2xze_A STAM-binding protein; h 22.4 1.3E+02 0.0046 22.8 5.0 34 111-145 38-71 (146)
311 2dl1_A Spartin; SPG20, MIT, st 22.1 2.3E+02 0.008 20.6 6.1 25 49-74 18-42 (116)
312 4a1g_A Mitotic checkpoint seri 21.5 1.5E+02 0.0053 22.7 5.2 39 104-143 92-130 (152)
313 2ymb_A MITD1, MIT domain-conta 21.2 20 0.00069 30.4 0.0 29 117-146 27-55 (257)
314 3t5v_B Nuclear mRNA export pro 20.5 4.9E+02 0.017 23.8 15.9 138 116-263 179-326 (455)
315 2wvi_A Mitotic checkpoint seri 20.5 1.7E+02 0.0059 22.7 5.3 45 97-142 80-124 (164)
316 3efz_A 14-3-3 protein; 14-3-3, 20.4 3.6E+02 0.012 22.8 7.6 54 89-143 168-226 (268)
No 1
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-37 Score=279.28 Aligned_cols=278 Identities=31% Similarity=0.543 Sum_probs=239.3
Q ss_pred chHHHHhHHHHHHHhhhh--hhccccCC--CC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 2 TDEKLVCEKQLAAALLRV--VFITKVGG--NK-IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACN 76 (320)
Q Consensus 2 ~~~~l~~~~~~~~k~~~~--~~~~~~~~--~~-~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~ 76 (320)
.|++|+.+ |+|++++ +|++||++ |+ +++|+++|.++|.+|...|++++|+++|.+|++++++++++...+.+
T Consensus 3 ~a~~~~~~---a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 79 (292)
T 1qqe_A 3 DPVELLKR---AEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNT 79 (292)
T ss_dssp CHHHHHHH---HHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHH---HHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 37889999 9999985 34466763 54 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
|.++|.+|... ++++|+.+|++|+.++++.|++..++.++.++|.+|...+|++++|+.+|++|+++++..+.......
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 99999999998 99999999999999999999999999999999999998229999999999999999999888777789
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCCccCcHHHH
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSREYK 234 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~f~~s~e~~ 234 (320)
++.++|.++..+|+|++|+.+|+++....++.+...+.....+++.+.|++.. +...+..+++.+.++.|.|+.+.++.
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 239 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 99999999999999999999999999988777665566666778888887754 45555555555556678888888888
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCC
Q psy9376 235 LLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRT 282 (320)
Q Consensus 235 ~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~ 282 (320)
.+..++.++..++.+++++|+..|+++.++|||++.++.+|++.+++.
T Consensus 240 ~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~~~ 287 (292)
T 1qqe_A 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQ 287 (292)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhhcc
Confidence 888888888878999999999999999999999999999999999753
No 2
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=100.00 E-value=9.2e-31 Score=236.21 Aligned_cols=264 Identities=22% Similarity=0.278 Sum_probs=230.1
Q ss_pred hHHHHhHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy9376 3 DEKLVCEKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAAN 82 (320)
Q Consensus 3 ~~~l~~~~~~~~k~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~ 82 (320)
|++|+.+ |+|.+++.|++| +|++++|+++|.++|.+|...|++++|+++|.++++++++++++..++.+|.++|.
T Consensus 10 A~~~~~~---a~k~~~~~~~~~--~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 10 AHEHIAK---AEKYLKTSFMKW--KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHH---HHHHHCCCSSSC--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHccccccCC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556665 778887655444 68999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 83 CFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 83 ~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
+|... ++++|+.+|++|++++++.|++..++.++.++|.+|.. |++++|+++|++|+++++..++......++.++|
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99998 99999999999999999999999999999999999976 9999999999999999999988888899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCCccCcHHHHHHHHHH
Q psy9376 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSREYKLLRILI 240 (320)
Q Consensus 162 ~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~ 240 (320)
.++..+|+|++|+.+|+++....++.+. .+.....++..+.+++.. +...+...++.+. ..|.|..+.+..++..++
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999987665443 222333556667777654 5566666666666 678888899999999999
Q ss_pred HHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 241 EHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 241 ~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
.++..++.+.+.+ +..|+.+..+|||+++++.+++
T Consensus 241 ~~~~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~l~ 275 (307)
T 2ifu_A 241 QAYDEQDEEQLLR-VCRSPLVTYMDNDYAKLAISLK 275 (307)
T ss_dssp HHHHTTCHHHHHH-HTTSHHHHTSCHHHHHHHHTCC
T ss_pred HHHHhcCHHHHHH-HHhCchhhhhhHHHHHHHHhCC
Confidence 8898889999999 5569999999999999987776
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=1.6e-18 Score=159.94 Aligned_cols=226 Identities=13% Similarity=0.073 Sum_probs=180.8
Q ss_pred CCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHh
Q psy9376 27 GNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGT-KHDAACNLLDAANCFK 85 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~-~~~aa~~~~~aa~~y~ 85 (320)
.|++++|++.|.+| |.+|...|++++|+.+|.+|++++++.++ ....+.++.++|.+|.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 68999999998877 67888899999999999999999999887 7788999999999999
Q ss_pred cC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 86 KT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 86 ~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
.. ++++|++++++|+++.++.++....+.++.++|.+|... |++++|+.+|++|+++.+..+.......++..+|.++
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ-SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 98 999999999999999999999999999999999999997 9999999999999999998877555689999999999
Q ss_pred HHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhh---hHHHHHHHHHHHHhCCCccCcHHH-HHHHHHH
Q psy9376 165 ALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCID---VINAHNAIDRYKTIYPAFQDSREY-KLLRILI 240 (320)
Q Consensus 165 ~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d---~~~~~~A~~~y~~~~~~f~~s~e~-~~l~~l~ 240 (320)
..+|++++|+++|+++...........+.. .+.. +..++.. ....++|+..+++. ...+...+. ..++.+.
T Consensus 275 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~--l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAYSQKAGDVIYLS--EFEF--LKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHH--HHHH--HHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHH--HHHH--HHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 999999999999999987643322111111 1222 2233332 34488888888776 222222222 2233333
Q ss_pred HHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 241 EHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 241 ~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
...+++++|+..|+++.+
T Consensus 350 -----~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 -----HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp -----HHTTCHHHHHHHHHHHHH
T ss_pred -----HHCCCHHHHHHHHHHHHH
Confidence 247899999999999876
No 4
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.81 E-value=5.3e-18 Score=156.45 Aligned_cols=227 Identities=19% Similarity=0.174 Sum_probs=176.8
Q ss_pred CCCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q psy9376 26 GGNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGT-KHDAACNLLDAANCF 84 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~-~~~aa~~~~~aa~~y 84 (320)
..|++++|++.|.+| |.+|...|+++.|+.++++|++++++.++ ....+.++.++|.+|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 368999999998877 66788899999999999999999998876 557899999999999
Q ss_pred hcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHH
Q psy9376 85 KKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHH 163 (320)
Q Consensus 85 ~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~ 163 (320)
... ++++|++++++|+.+.++.++....+.++.++|.+|... |++++|+.+|++|+++++..+++.. ..++..+|.+
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~ 270 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-GDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWT 270 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHH
Confidence 998 999999999999999999999999999999999999997 9999999999999999988777666 8899999999
Q ss_pred HHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhh---hHHHHHHHHHHHHhCCCccCcHHHHHHHHHH
Q psy9376 164 AALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCID---VINAHNAIDRYKTIYPAFQDSREYKLLRILI 240 (320)
Q Consensus 164 ~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d---~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~ 240 (320)
+..+|++++|+.+++++.......+...+. ..+. .+..++.. .....+|+..+++. ..++...+.. ..+.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~--~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~--~~la 343 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYK--ELFL--FLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA--RSAA 343 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHH--HHHH--HHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH--HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHH--HHHH--HHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH--HHHH
Confidence 999999999999999998764332111111 1111 22223332 34477888877763 2222222221 2222
Q ss_pred HHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 241 EHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 241 ~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
..+ ...+++++|+..|+++.+
T Consensus 344 ~~y--~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVF--ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHH--HHTTCHHHHHHHHHHHHH
T ss_pred HHH--HHCCCHHHHHHHHHHHHH
Confidence 222 247899999999999876
No 5
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=1.2e-17 Score=149.04 Aligned_cols=187 Identities=17% Similarity=0.126 Sum_probs=150.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK--TDNEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~--~~~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
|...|.+|...|++++|+.+|++|+++++..|++..++.++.++|.+|.. .++++|+.+|++|+++++..++....+.
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 33446777888999999999999999999999999999999999999998 4999999999999999999999888899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcc
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN-SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYS 193 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~-~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~ 193 (320)
++.++|.+|... |++++|+.+|++++++.+..+.. .....++.++|.++..+|++++|+.+|+++....|+.....
T Consensus 160 ~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-- 236 (292)
T 1qqe_A 160 CFIKCADLKALD-GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-- 236 (292)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH--
Confidence 999999999997 99999999999999998877653 35667899999999999999999999999987655533211
Q ss_pred hhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCCCcc
Q psy9376 194 AKEYFFRAALCHLCI--DVINAHNAIDRYKTIYPAFQ 228 (320)
Q Consensus 194 ~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~f~ 228 (320)
...+...+...+. +.++.++|+..|.++...-|
T Consensus 237 --~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 237 --ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 1111111222222 67889999999977655444
No 6
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.2e-16 Score=146.63 Aligned_cols=244 Identities=13% Similarity=0.074 Sum_probs=186.7
Q ss_pred CCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q psy9376 27 GNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~ 86 (320)
.|++++|+.+|.++ |.++...|++++|+.+|.+++++.+..+++...+.++..+|.+|..
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 67888888888765 5677788999999999999999999999998899999999999988
Q ss_pred C-C--------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 87 T-D--------------------NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 87 ~-~--------------------~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
. + +++|+.++++++.+.+..++....+.++.++|.+|... |++++|+.+|++++.+.+
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHH
Confidence 7 8 99999999999999999999999999999999999997 999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCC
Q psy9376 146 GEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYP 225 (320)
Q Consensus 146 ~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~ 225 (320)
..+.......++..+|.++...|++++|+.+|+++....+........ ...+...+.+ +...++.++|+..+++...
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~--~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNT--YTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH-HHHHHHHHHH--HHHhCcHHHHHHHHHHHHH
Confidence 988888888999999999999999999999999998765443211111 1112222333 3345666666666655433
Q ss_pred CccC---cH-HHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch------hhhHHHHHHHHH
Q psy9376 226 AFQD---SR-EYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL------DQWYTTVLLRIK 276 (320)
Q Consensus 226 ~f~~---s~-e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l------d~~~~~~l~~i~ 276 (320)
..+. .. .......+...+ ...+++++|+..|+++.++ .|+...++..+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAY--TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 3222 11 112223332222 2468999999999999876 444444544433
No 7
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.79 E-value=9.2e-17 Score=147.51 Aligned_cols=232 Identities=13% Similarity=0.107 Sum_probs=181.3
Q ss_pred CCCHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-
Q psy9376 27 GNKIDEAIECYTRA------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~- 87 (320)
.|++++|+.+|+++ |.++...|++++|+.+|++++.+.+..+++...+.++..+|.+|...
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 46677777766655 67888899999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCC--------------------HHHHHHHHHHHHhHhhcc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD--------------------QEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~--------------------~~~Ai~~y~kA~~~~~~~ 147 (320)
++++|+.++++++.+.+..++....+.++..+|.+|... |+ +++|+.+|++++.+.+..
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999997 99 999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCc
Q psy9376 148 ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAF 227 (320)
Q Consensus 148 ~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f 227 (320)
+.......++..+|.++...|++++|+.+|+++....+..+..... ...+...+.++ ...++.++|+..+.+....+
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE-RRAYSNLGNAY--IFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHH--HHcCChHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999998765443221111 11222333333 34455666666665543333
Q ss_pred cC---cHH-HHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 228 QD---SRE-YKLLRILIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 228 ~~---s~e-~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
+. ... ...+..+...+ ...+++++|+..|+++.++
T Consensus 258 ~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTY--TLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHH--HHhCcHHHHHHHHHHHHHH
Confidence 22 111 22223333222 2468999999999998875
No 8
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.79 E-value=1.4e-16 Score=141.73 Aligned_cols=232 Identities=13% Similarity=0.107 Sum_probs=179.4
Q ss_pred CCCHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-
Q psy9376 27 GNKIDEAIECYTRA------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~- 87 (320)
.|++++|+..|+++ |.++...|++++|+.+|++++.+....+++...+.++..+|.+|...
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 46777777777665 67888899999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCC--------------------HHHHHHHHHHHHhHhhcc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD--------------------QEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~--------------------~~~Ai~~y~kA~~~~~~~ 147 (320)
++++|+.++++++.+.+..++....+.++..+|.+|... |+ +++|+.++++++.+.+..
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~ 176 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999997 99 999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCc
Q psy9376 148 ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAF 227 (320)
Q Consensus 148 ~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f 227 (320)
+.......++..+|.++...|++++|+.+|+++....+..+...... ..+...+.+. ...++.++|...+++....+
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~--~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER-RAYSNLGNAY--IFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHH--HHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHH-HHHHHHHHHH--HHcCCHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999987644432111111 1222223332 24455566666665443332
Q ss_pred cC---cH-HHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 228 QD---SR-EYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 228 ~~---s~-e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
+. .. ....+..+...+ ...+++++|+..|+++..+
T Consensus 254 ~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTY--TLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHH
Confidence 22 11 122222332222 2468999999999998764
No 9
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.78 E-value=1.5e-16 Score=147.16 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=182.4
Q ss_pred CCCHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-
Q psy9376 27 GNKIDEAIECYTRA------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT- 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~- 87 (320)
.|++++|+..|+++ |.++...|++++|+.+|++++.+.+..++....+.++..+|.+|...
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 57888888888776 66778899999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCC-----------------HHHHHHHHHHHHhHhhccCCc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD-----------------QEKAVEHYEQAATYFKGEESN 150 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~-----------------~~~Ai~~y~kA~~~~~~~~~~ 150 (320)
++++|+.++++++.+.+..++....+.++..+|.+|... |+ +++|+.+|++++++.+..+..
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999997 99 999999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCc
Q psy9376 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDS 230 (320)
Q Consensus 151 ~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s 230 (320)
.....++..+|.++...|++++|+.+|+++....+........ ...+...+.+ +...++.++|+..+++.....+..
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE-RRANSNLGNS--HIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHH--HHHCcCHHHHHHHHHHHHHHHHHc
Confidence 8888999999999999999999999999998765543221111 1122222333 334556666666665543333321
Q ss_pred ----HHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 231 ----REYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 231 ----~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
.....+..+...+ ...+++++|+..|+++..+
T Consensus 297 ~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 297 GEREVEAQSCYSLGNTY--TLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp TCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHH
Confidence 1122223333222 2468999999999999874
No 10
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.77 E-value=2.7e-16 Score=145.48 Aligned_cols=244 Identities=11% Similarity=0.121 Sum_probs=186.2
Q ss_pred CCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q psy9376 27 GNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~ 86 (320)
.|++++|+.+|.++ |.+|...|++++|..+|++++++....++....+.++..+|.+|..
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 57888888888766 5677788999999999999999999999989999999999999998
Q ss_pred C-C-----------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 87 T-D-----------------NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 87 ~-~-----------------~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
. + +++|+.++++++.+.+..++....+.++..+|.+|... |++++|+.+|++++.+.+..+
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL-GDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHT
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhcC
Confidence 8 8 99999999999999999999999999999999999997 999999999999999999988
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc
Q psy9376 149 SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ 228 (320)
Q Consensus 149 ~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~ 228 (320)
.......++..+|.++...|++++|+.+|+++....+........ ...+...+.++ ...++.++|+..+++.....+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE-AQSCYSLGNTY--TLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999998765433211111 11222223332 345566666666655433322
Q ss_pred C---c-HHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 229 D---S-REYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 229 ~---s-~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
. . ........+...+. ..+++++|+..|+++.++.+-...-....+
T Consensus 335 ~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 384 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHS--AIGGHERALKYAEQHLQLAXXXXXXXXXXX 384 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 2 1 11122233332222 468999999999998876555444433333
No 11
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=3.5e-17 Score=147.10 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~ 108 (320)
+...++..|..+|.+|...|++++|+.+|++|+++++..+++...+.++.++|.+|...++++|+.+|++|+++++..++
T Consensus 71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Confidence 44444555555677888889999999999999999999999999999999999999888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
....+.++.++|.+|... |++++|+.+|++++.+++..+.......++..+|.++..+|++++|+.+|+++. ..+..
T Consensus 151 ~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred hhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 999999999999999997 999999999999999999887767777899999999999999999999999998 65543
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.77 E-value=3.1e-16 Score=139.43 Aligned_cols=232 Identities=13% Similarity=0.074 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q psy9376 27 GNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~ 86 (320)
.|++++|++.+.++ |.++...|++++|...|++++++.++.+++...+.++..+|.+|..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 57889998888765 5677788999999999999999999999998899999999999988
Q ss_pred C-C--------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 87 T-D--------------------NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 87 ~-~--------------------~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
. + +++|+.++++++.+.+..++....+.++..+|.+|... |++++|+.++++++++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 7 7 99999999999999999999999999999999999997 999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCC
Q psy9376 146 GEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYP 225 (320)
Q Consensus 146 ~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~ 225 (320)
..+.+.....++..+|.++...|++++|+.+|+++....+....... ....+...+.+ +...++.++|+..+.++..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~--~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV-EAQSCYSLGNT--YTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHH--HHHhcCHHHHHHHHHHHHH
Confidence 98888888899999999999999999999999999876544321111 11112222222 2345666666666655433
Q ss_pred CccCc---H-HHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 226 AFQDS---R-EYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 226 ~f~~s---~-e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
.++.. . .......+...+ ...+++++|+..|+++.++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAY--TALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcCCcHHHHHHHHHHHHHH--HHcCChHHHHHHHHHHHHH
Confidence 33221 1 112222332222 2478999999999999874
No 13
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.76 E-value=5.3e-16 Score=143.00 Aligned_cols=217 Identities=14% Similarity=0.125 Sum_probs=168.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC-hHHHHHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR-FTMAAKHHQ 117 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~-~~~aa~~~~ 117 (320)
.|..+...|++++|+.+|++|+.+....+++...+.++..+|.+|... ++++|+.++++|++++++.++ ....+.++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 688889999999999999999999999999999999999999999998 999999999999999999987 788899999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHh
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEY 197 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~ 197 (320)
++|.+|... |++++|+++|++|+++.+..++....+.++.++|.+|..+|++++|+++|+++.......... ......
T Consensus 189 ~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~ 266 (383)
T 3ulq_A 189 LFATNFLDL-KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL-PSLPQA 266 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHH
T ss_pred HHHHHHHHh-cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-hhHHHH
Confidence 999999997 999999999999999999998888899999999999999999999999999998753222110 011122
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCCccC--cHH----HHHHHHHHHHHHhcCHhHHHHHHHHHhhhc
Q psy9376 198 FFRAALCHLCIDVINAHNAIDRYKTIYPAFQD--SRE----YKLLRILIEHIEEQNVDGFTEAVKDYDSIS 262 (320)
Q Consensus 198 ~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~--s~e----~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~ 262 (320)
+++.+.++. ..++.++|...+++.....+. ... ...+..+. ...++.+.+.+|+..+++..
T Consensus 267 ~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~al~~~~~~~ 333 (383)
T 3ulq_A 267 YFLITQIHY--KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY--LSGPDEEAIQGFFDFLESKM 333 (383)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCc
Confidence 333344433 445566666666554332221 111 12223322 11233355999999998873
No 14
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=1.3e-15 Score=140.41 Aligned_cols=219 Identities=12% Similarity=0.065 Sum_probs=168.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC-hHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR-FTMAAK 114 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~-~~~aa~ 114 (320)
+...|..+...|++++|+.+|++|+.+....+++...+.++.++|.+|... ++++|+.++++|+++++..++ ....+.
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 344588888999999999999999999999999999999999999999998 999999999999999999887 568899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
++.++|.+|... |++++|+++|++|+++.+..++....+.++.++|.+|..+|++++|+++|+++........... .
T Consensus 184 ~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~- 260 (378)
T 3q15_A 184 SLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L- 260 (378)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H-
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H-
Confidence 999999999997 9999999999999999999888888899999999999999999999999999987533211110 1
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHh---CCCccCc-HH--HHHHHHHHHHHHhcCHhHHHHHHHHHhhhc
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTI---YPAFQDS-RE--YKLLRILIEHIEEQNVDGFTEAVKDYDSIS 262 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~---~~~f~~s-~e--~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~ 262 (320)
...++..+.++ ...++.++|++.+++. .+..+.. .. ...+..+. ...++...+.+|+..+++..
T Consensus 261 ~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly--~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 261 PKVLFGLSWTL--CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY--KETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhCC
Confidence 11223333333 3456666666666543 3332221 11 12222222 11233456999999998853
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.2e-15 Score=131.22 Aligned_cols=223 Identities=16% Similarity=0.145 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-ChH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG-RFT 110 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~-~~~ 110 (320)
.++.+...|..+...|++++|+.+|.++++.. .+ ..++..+|.+|... ++++|+.++++++.+.+..+ +..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 44566677899999999999999999999985 22 46788999999988 99999999999999999885 566
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC--------------------CchHHHHHHHHHHHHHHHccCH
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE--------------------SNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~--------------------~~~~a~~~~~~la~~~~~~g~y 170 (320)
..+.++..+|.+|... |++++|+.+|++++.+.+... .......++..+|.++...|++
T Consensus 77 ~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 77 VISKSFARIGNAYHKL-GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 6688999999999997 999999999999999644311 2334567899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHh
Q psy9376 171 NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVD 249 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~ 249 (320)
++|+.+|+++....+..+. .++..+.+.+ ..++.++|+..+.+.....|...+.... ..++. ..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-----~~g 221 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDAR-------GYSNRAAALA--KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI-----AVK 221 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHH-------HHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HTT
T ss_pred HHHHHHHHHHHhcCcccHH-------HHHHHHHHHH--HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-----HHh
Confidence 9999999999987665432 2333344433 4566667777776655555555444332 33331 468
Q ss_pred HHHHHHHHHhhhcchh------hhHHHHHHHHHH
Q psy9376 250 GFTEAVKDYDSISRLD------QWYTTVLLRIKK 277 (320)
Q Consensus 250 ~~~~Ai~~ye~~~~ld------~~~~~~l~~i~~ 277 (320)
++++|+..|+++.+++ |....++..+.+
T Consensus 222 ~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 222 EYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999999999999999 877777766654
No 16
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.74 E-value=1.2e-15 Score=121.37 Aligned_cols=156 Identities=12% Similarity=0.107 Sum_probs=146.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
.|+...-...+...|..+...|++++|+.+|.+++++.+..+++...+.++..+|.++... ++++|+.++++++.+.+.
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3677778888888999999999999999999999999999999999999999999999988 999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 106 ~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
.+++...+.++.++|.++... |++++|++++++++.+.+..+.+.....++..+|.++...|++++|+++++++...
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999997 99999999999999999998888888999999999999999999999999998864
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=8.1e-16 Score=136.00 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=138.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSG--TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~--~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~ 104 (320)
++.+.-+..+...|..+...|++++|+.+|++++++..+.+ +....+.++..+|.+|... ++++|+.++++++.+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45566677788889999999999999999999999988776 5667889999999999988 99999999999999998
Q ss_pred Hc--CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 105 DM--GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 105 ~~--~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
.. ++....+.++..+|.+|... |++++|+.+|++++++.... +.......++..+|.++...|++++|+++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77 66778888999999999997 99999999999999998665 555667889999999999999999999999999
Q ss_pred HHh
Q psy9376 181 GRT 183 (320)
Q Consensus 181 ~~~ 183 (320)
...
T Consensus 180 ~~~ 182 (311)
T 3nf1_A 180 LEI 182 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 18
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=9.8e-16 Score=133.24 Aligned_cols=227 Identities=16% Similarity=0.116 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKS--GTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~--~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~ 108 (320)
.-...+...|.++...|++++|+.+|++++++..+. ++....+.++..+|.+|... ++++|+.++++++.+..+.+.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 334444455788889999999999999999999877 67778899999999999998 999999999999999877633
Q ss_pred --hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 109 --FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 109 --~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
....+.++.++|.+|... |++++|+.+|++++.++... +.......++..+|.++...|++++|+.+|+++....
T Consensus 121 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 357788999999999997 99999999999999997654 3345567899999999999999999999999998764
Q ss_pred hhhhhhhc--chhHhHHHHHHHHHhh----hhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy9376 185 LDSSLLKY--SAKEYFFRAALCHLCI----DVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDY 258 (320)
Q Consensus 185 ~~~~~~~~--~~~~~~~~a~~~~l~~----d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~y 258 (320)
+....... .....+...+...... ......++...+....+..+.... ....+...+ ...+++++|+..|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~--~~~g~~~~A~~~~ 275 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT--TLRSLGALY--RRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH--HHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHH--HHcCCHHHHHHHH
Confidence 43221110 1112222222222211 123333444444333333332222 222232222 2468999999999
Q ss_pred hhhcc
Q psy9376 259 DSISR 263 (320)
Q Consensus 259 e~~~~ 263 (320)
+++++
T Consensus 276 ~~al~ 280 (283)
T 3edt_B 276 DCASR 280 (283)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99876
No 19
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.73 E-value=3.9e-16 Score=143.67 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|.++ |.++...|++++|..+|.+++...+ ..+.++.++|.++... ++++
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP------NFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHH
Confidence 45555565555443 5555556666666666666555421 1233455555555544 5555
Q ss_pred HHHHHHHHHHHHHHcCC--------------hH--------------HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 92 AIDCLSKAIVIYTDMGR--------------FT--------------MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~--------------~~--------------~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
|+.+|++++.+.|.... +. .-+.++.++|.+|... |++++|+++|++++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ-GLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 55555555554432211 00 0012444555555554 5555555555555554
Q ss_pred hhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy9376 144 FKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTI 223 (320)
Q Consensus 144 ~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~ 223 (320)
.+.. ..++..+|.++...|++++|++.|+++....+.+... +.. +..++...++.++|+..++++
T Consensus 267 ~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~--l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 267 QPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS-------LNN--LANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp CSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH-------HHH--HHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH-------HHH--HHHHHHHcCCHHHHHHHHHHH
Confidence 3332 2344555555555555555555555555443332211 111 111122344555555555555
Q ss_pred CCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 224 YPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 224 ~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
....|+....... ..++ ...+++++|+..|+++.+++|....++..
T Consensus 332 l~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~a~~~~p~~~~a~~~ 378 (388)
T 1w3b_A 332 LEVFPEFAAAHSNLASVL-----QQQGKLQEALMHYKEAIRISPTFADAYSN 378 (388)
T ss_dssp TTSCTTCHHHHHHHHHHH-----HTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhhCCCCHHHHHh
Confidence 5555544332221 2211 13455666666666666555544444433
No 20
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=6e-16 Score=134.86 Aligned_cols=230 Identities=13% Similarity=0.051 Sum_probs=164.7
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHH
Q psy9376 26 GGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNE 90 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~ 90 (320)
..|++++|+..|.++ |.++...|++++|+.+|.++++. . +++...+.++..+|.+|... +++
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-V--NATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-S--CTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-c--CchhHHHHHHHHHHHHHHHcccHH
Confidence 368999999999887 77889999999999999999983 2 34444577899999999998 999
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|+.++++++++.|.... ++..+|.+|... |++++|+.+|++++++.+.. ..++..+|......+++
T Consensus 92 ~A~~~~~~a~~~~~~~~~------~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTTRLD------MYGQIGSYFYNK-GNFPLAIQYMEKQIRPTTTD------PKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHHHHHSTTCTH------HHHHHHHHHHHT-TCHHHHHHHHGGGCCSSCCC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCcccHH------HHHHHHHHHHHc-cCHHHHHHHHHHHhhcCCCc------HHHHHHHHHHHHHHHHH
Confidence 999999999999887654 899999999997 99999999999999985543 56889999444455699
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-h---hHHHHHHHHHHHHhCCCccCcH-H--HHHHHHHHHHH
Q psy9376 171 NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-D---VINAHNAIDRYKTIYPAFQDSR-E--YKLLRILIEHI 243 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d---~~~~~~A~~~y~~~~~~f~~s~-e--~~~l~~l~~a~ 243 (320)
++|+++|+++....++.... ++..+.+.... + ...+...++...+.....+... . ......+...+
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIG-------YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHH-------HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHH-------HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 99999999999887664321 22233333332 2 2222223333333322223321 1 11122222222
Q ss_pred HhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhc
Q psy9376 244 EEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVG 280 (320)
Q Consensus 244 ~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~ 280 (320)
...+++++|+..|+++++++|.++.....+.....
T Consensus 232 --~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 232 --TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp --HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred --HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 24689999999999999999999988777665444
No 21
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.70 E-value=1.2e-15 Score=140.30 Aligned_cols=215 Identities=20% Similarity=0.192 Sum_probs=148.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|++.|+++ |.++...|++++|+..|++++++.+ .....+..+|.++... ++++
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP------DLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT------TCTHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHccCHHH
Confidence 68999999998876 8899999999999999999998742 2356778889999987 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+.+|++++...|.. +.++.++|.+|... |++++|+.+|++++.+.|.. ..++..+|.++...|+++
T Consensus 154 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 154 AKACYLKAIETQPNF------AVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLDPNF------LDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHHHHHHHCTTC------HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHH
Confidence 999999999886654 33788899998887 99999999999998876653 456777777777777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHH-HHHHHHHHHhcCHhH
Q psy9376 172 KAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKL-LRILIEHIEEQNVDG 250 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~-l~~l~~a~~~~d~~~ 250 (320)
+|+..|+++....|++... +...+.+ +...++.++|++.|+++....|...+... +..++ ...++
T Consensus 221 ~A~~~~~~al~~~p~~~~~-------~~~l~~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-----~~~g~ 286 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVV-------HGNLACV--YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-----KEKGS 286 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHH-------HHHHHHH--HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH-----HHHSC
T ss_pred HHHHHHHHHHhhCcCCHHH-------HHHHHHH--HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HHcCC
Confidence 7777777777666554332 1112222 22344555555555554444444333221 12222 12466
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 251 FTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 251 ~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
+++|+..|+++.+++|....++..
T Consensus 287 ~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 287 VAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHH
Confidence 666777776666666655555533
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=8.6e-16 Score=142.58 Aligned_cols=227 Identities=9% Similarity=-0.035 Sum_probs=152.4
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKK-WNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~-~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~ 90 (320)
.|++++|+..|+++ |.++...|+ +++|+.+|++++.+.+ ....+|.+.|.++... +++
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P------~~~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------KNYQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCCT
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHccCHH
Confidence 46778888887776 567777775 8888888888887742 2456677777777776 778
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH-ccC
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL-LQN 169 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~-~g~ 169 (320)
+|+.+|++|+.+.+++.. +|.++|.++... |++++|+.+|++++++.+.. ..++.++|.++.. .|.
T Consensus 184 eAl~~~~kal~ldP~~~~------a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~------~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 184 QELEFIADILNQDAKNYH------AWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGY 250 (382)
T ss_dssp THHHHHHHHHHHCTTCHH------HHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCccCHH------HHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCc
Confidence 888888888887776544 788888888886 88888888888888877664 4677888888887 444
Q ss_pred HHHH-----HHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHH-HHHHHHHHH
Q psy9376 170 YNKA-----IQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYK-LLRILIEHI 243 (320)
Q Consensus 170 y~~A-----i~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~-~l~~l~~a~ 243 (320)
+++| +++|+++....+++... |+..+.+....+..+..+|++.+..+ ..-+.+.... .+..++...
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a-------~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESA-------WNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHH-------HHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 4666 47788887776654421 22222221112233567788877777 5555554433 335554322
Q ss_pred Hh---cCHh-HHHHHHHHHhhh-cchhhhHHHHHHHHHHhhc
Q psy9376 244 EE---QNVD-GFTEAVKDYDSI-SRLDQWYTTVLLRIKKQVG 280 (320)
Q Consensus 244 ~~---~d~~-~~~~Ai~~ye~~-~~ld~~~~~~l~~i~~~~~ 280 (320)
.. .+.+ .+++|++.|+++ .++||-....+....+.+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 11 1123 469999999999 8999988888776665444
No 23
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.69 E-value=1.1e-14 Score=121.13 Aligned_cols=151 Identities=14% Similarity=0.117 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-ChH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG-RFT 110 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~-~~~ 110 (320)
-...+...|.++...|++++|..+|++++.+.+..+++...+.++.++|.+|... ++++|+.++++++.+.+..+ ++.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 3455666789999999999999999999999999999999999999999999998 99999999999999999999 566
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
..+.++.++|.++... |++++|+.++++++.+.+..+.+...+.++..+|.++...|++++|+.+++++....
T Consensus 105 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 105 AASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 8899999999999997 999999999999999999988888888999999999999999999999999998753
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=8.7e-16 Score=140.01 Aligned_cols=216 Identities=14% Similarity=0.077 Sum_probs=158.4
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|+++ |.++...|++++|+.+|++++++.+ ....++..+|.+|... ++++
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP------NNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHccccHHH
Confidence 57899999999887 7788899999999999999999842 2356789999999988 9999
Q ss_pred HHHHHHHHHHHHHHcCChH----HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 92 AIDCLSKAIVIYTDMGRFT----MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~----~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
|+.++++++.+.|...... ..+..+..+|.++... |++++|+.+|++++.+.+.... ..++..+|.++...
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS-SVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLS 226 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------CC-HHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHC
Confidence 9999999999988765532 2345567789999997 9999999999999999776322 46889999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHH-HHHHHHHHHhc
Q psy9376 168 QNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKL-LRILIEHIEEQ 246 (320)
Q Consensus 168 g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~-l~~l~~a~~~~ 246 (320)
|++++|+++|+++....++.... +...+.+. ...++.++|+..|+++....|....... +..++.
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----- 292 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSL-------WNRLGATL--ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI----- 292 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHH--HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-----
Confidence 99999999999999887665432 33333333 3456777777777766555566544333 233332
Q ss_pred CHhHHHHHHHHHhhhcchhhh
Q psy9376 247 NVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 247 d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
..+++++|+..|+++.+++|-
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHhCcc
Confidence 468999999999999987665
No 25
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=2.2e-15 Score=124.05 Aligned_cols=172 Identities=13% Similarity=0.109 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
-...|...|.+|...|++++|+.+|++++++. | ....++..+|.+|... ++++|+..+.+++...+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-----P-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA---- 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH----
Confidence 35678888999999999999999999999984 2 2457889999999988 99999999999988766543
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhh
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLK 191 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~ 191 (320)
.++..+|.++... +++++|+..+.+++.+.+.. ..++..+|.++..+|++++|++.|+++....|..+..
T Consensus 74 --~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~- 143 (184)
T 3vtx_A 74 --EAYYILGSANFMI-DEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRA- 143 (184)
T ss_dssp --HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred --HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhH-
Confidence 3788999999997 99999999999999988764 4688899999999999999999999998765543321
Q ss_pred cchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHH
Q psy9376 192 YSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTT 270 (320)
Q Consensus 192 ~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~ 270 (320)
++ .++.++ ...+++++|+..|++++++||.+..
T Consensus 144 ------~~-----------------------------------~lg~~~-----~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 144 ------YQ-----------------------------------SIGLAY-----EGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp ------HH-----------------------------------HHHHHH-----HHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred ------HH-----------------------------------HHHHHH-----HHCCCHHHHHHHHHHHHhCCccCHH
Confidence 11 112222 1367899999999999988776543
No 26
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.67 E-value=4.8e-15 Score=126.44 Aligned_cols=210 Identities=12% Similarity=0.098 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHH
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAA 113 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa 113 (320)
+.+...|..+...|++++|+.+|++++++.+. . ....+..+|.++... ++++|+.++++++.+.|.. +
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----Q-DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL------A 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH------H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----C-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch------H
Confidence 56667799999999999999999999998531 1 224566689999988 9999999999999876653 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC-chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh--hhhh
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES-NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD--SSLL 190 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~-~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~--~~~~ 190 (320)
.++..+|.+|... |++++|+.+|++++.+.|.... ....+.++..+|.++...|++++|++.|+++....|+ ...
T Consensus 77 ~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~- 154 (228)
T 4i17_A 77 NAYIGKSAAYRDM-KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD- 154 (228)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH-
T ss_pred HHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH-
Confidence 4899999999997 9999999999999999887531 1223478999999999999999999999999987665 332
Q ss_pred hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHH
Q psy9376 191 KYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTT 270 (320)
Q Consensus 191 ~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~ 270 (320)
.++..+.++... + ...++....+.+.. ...+.... . .-.+.|++|+..|+++.+++|..+.
T Consensus 155 ------~~~~l~~~~~~~--~--~~~~~~a~~~~~~~--~~~~~~~~--~-----~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 155 ------ALYSLGVLFYNN--G--ADVLRKATPLASSN--KEKYASEK--A-----KADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp ------HHHHHHHHHHHH--H--HHHHHHHGGGTTTC--HHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ------HHHHHHHHHHHH--H--HHHHHHHHhcccCC--HHHHHHHH--H-----HHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 233344444322 1 11222222222221 11111111 1 1257899999999999999998887
Q ss_pred HHHHHH
Q psy9376 271 VLLRIK 276 (320)
Q Consensus 271 ~l~~i~ 276 (320)
++..+.
T Consensus 216 ~~~~l~ 221 (228)
T 4i17_A 216 IKQMQD 221 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.67 E-value=3e-15 Score=133.47 Aligned_cols=227 Identities=11% Similarity=0.035 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAK-KWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g-~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~ 90 (320)
.|++++|+..+.++ |.++...| ++++|+.+|++++.+.+ ....++..+|.++... +++
T Consensus 69 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK------TYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT------TCTHHHHHHHHHHHHHTCHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHccCHH
Confidence 45666666666554 55666667 77777777777776532 1234577778887776 888
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|+.++++++.+.+.... .+..+|.+|... |++++|+.+|++++.+.+.. ..++..+|.++...|++
T Consensus 143 ~A~~~~~~a~~~~~~~~~------~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHL------PMLYIGLEYGLT-NNSKLAERFFSQALSIAPED------PFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHHHHHHTTTCSH------HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccccHH------HHHHHHHHHHHH-hhHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcccH
Confidence 999999999888776544 677799999987 99999999999999887664 46888999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhh--hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHH-HHHHHHHHHhcC
Q psy9376 171 NKAIQIYEEVGRTSLDSSLL--KYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKL-LRILIEHIEEQN 247 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~-l~~l~~a~~~~d 247 (320)
++|+.+|+++....+..... .......+...+.+. ...++.++|+..+++.....|....... +..+.. .
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-----~ 282 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC--RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS-----L 282 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH-----H
Confidence 99999999998764221110 000112233334443 3456666677766665444444433332 233332 4
Q ss_pred HhHHHHHHHHHhhhcchhhhHHHHHHHHHHhh
Q psy9376 248 VDGFTEAVKDYDSISRLDQWYTTVLLRIKKQV 279 (320)
Q Consensus 248 ~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~ 279 (320)
.+++++|+..|+++.+++|-...++..+...+
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 68999999999999998888877777766655
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.7e-15 Score=129.07 Aligned_cols=193 Identities=13% Similarity=-0.030 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 36 ~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
.+...|..+...|++++|+..|++++++. | ..+.++..+|.++... ++++|+.++++++++.|.+..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------ 74 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-----P-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------ 74 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----S-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------
Confidence 45566889999999999999999999874 2 3467788999999888 999999999999999876543
Q ss_pred HHHHHHHHHHhcc-----------CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 115 HHQTIAEIYETDC-----------VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 115 ~~~~la~~y~~~l-----------~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
++.++|.++.. . |++++|+..|++++++.|.. ..++..+|.++...|++++|+..|+++...
T Consensus 75 a~~~lg~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 75 GYMVLSEAYVA-LYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 78999999988 6 89999999999999998764 578899999999999999999999999987
Q ss_pred hhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhc
Q psy9376 184 SLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSIS 262 (320)
Q Consensus 184 ~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~ 262 (320)
. +.+. .++..+.+. ...++.++|+..|+++....|+....... ..+ ....+++++|+..|+++.
T Consensus 148 ~-~~~~-------~~~~la~~~--~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~-----~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 148 E-DTPE-------IRSALAELY--LSMGRLDEALAQYAKALEQAPKDLDLRVRYASA-----LLLKGKAEEAARAAALEH 212 (217)
T ss_dssp C-CCHH-------HHHHHHHHH--HHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH-----HTC---------------
T ss_pred c-cchH-------HHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-----HHHccCHHHHHHHHHHHh
Confidence 6 4332 123333333 34567777777777665555655544332 222 236789999999998875
No 29
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=8.3e-14 Score=122.97 Aligned_cols=221 Identities=15% Similarity=0.139 Sum_probs=155.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--CChHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKS--GTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM--GRFTMAAKH 115 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~--~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~--~~~~~aa~~ 115 (320)
|.++...|++++|..+|++++.+..+. ++....+.++..+|.+|... ++++|+.++++++.+.... ++....+.+
T Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 667778899999999999999999877 67778899999999999988 9999999999999999776 666778889
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhh--
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLK-- 191 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~-- 191 (320)
+..+|.+|... |++++|+++|++++.++... +.......++..+|.++...|++++|+++|+++....+......
T Consensus 156 ~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 156 LNNLALLCQNQ-GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999997 99999999999999997765 34556778999999999999999999999999987543321100
Q ss_pred cchhHhHHHHHHHHHhh----hhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 192 YSAKEYFFRAALCHLCI----DVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 192 ~~~~~~~~~a~~~~l~~----d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
......+.....+.... ..+...++...+.......+... .....+...+ ...+++++|+..|++++++.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~la~~~--~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT--TTLKNLGALY--RRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHH--HHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH--HHHHHHHHHH--HHCCCHHHHHHHHHHHHHHhh
Confidence 00011111111111110 11111222222322222222222 2223333222 247899999999999998876
No 30
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.64 E-value=3.7e-14 Score=127.52 Aligned_cols=175 Identities=14% Similarity=0.099 Sum_probs=114.3
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 81 ANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 81 a~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
|.++... ++++|+.++++++...|.. +.++..+|.++... |++++|+.+|++++...+.. ..++..
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~ 193 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKE-GEPRKAISDLKAASKLKSDN------TEAFYK 193 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCSCC------HHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 4555555 6777777777777665543 23688888888886 88888888888888876553 467888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHH-------HHHHHHhhhhHHHHHHHHHHHHhCCCccCcHH
Q psy9376 160 VAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFR-------AALCHLCIDVINAHNAIDRYKTIYPAFQDSRE 232 (320)
Q Consensus 160 la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~-------a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e 232 (320)
+|.++...|++++|+..|+++....++.+... ..+.. .....++...++.++|++.+++.....|....
T Consensus 194 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCF----AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccchHHH----HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 99999999999999999999887766544321 01100 01122223557777788877776666666544
Q ss_pred HHH--HHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 233 YKL--LRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 233 ~~~--l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
... ...+...+ ...+++++|+..|+++.+++|....++..
T Consensus 270 ~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 270 YTVRSKERICHCF--SKDEKPVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 321 12222222 24688999999999999866655554433
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=4.5e-15 Score=134.81 Aligned_cols=203 Identities=12% Similarity=0.052 Sum_probs=127.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
..|..+...|++++|+.+|+++++..+ ....++..+|.++... ++++|+.++++++.+.|.+. .++.
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~ 136 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQDP------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ------TALM 136 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH------HHHH
Confidence 346777777888888888888776532 2345677777777776 77888888888877765432 3677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH---------------------------------------------
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS--------------------------------------------- 152 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~--------------------------------------------- 152 (320)
.+|.+|... |++++|+.+|++++.+.+.......
T Consensus 137 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 137 ALAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc
Confidence 777777775 7777777777777766554321110
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHH
Q psy9376 153 ANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSRE 232 (320)
Q Consensus 153 a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e 232 (320)
...++..+|.++...|++++|+.+|+++....++.+. .+...+.+. ...++.++|+..|+++....|....
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~l~~~~--~~~g~~~~A~~~~~~al~~~~~~~~ 286 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL-------LWNKLGATL--ANGNQSEEAVAAYRRALELQPGYIR 286 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHH--HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH-------HHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 2456777888888888888888888887776554332 122223332 2345566666666555444444443
Q ss_pred HHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhH
Q psy9376 233 YKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWY 268 (320)
Q Consensus 233 ~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~ 268 (320)
.... ..++. ..+++++|+..|+++.+++|-.
T Consensus 287 ~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 287 SRYNLGISCI-----NLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCCC
Confidence 3322 33221 3577888888888887766544
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.9e-14 Score=122.80 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
..+.+.....+...|..+...|++++|+.+|+++++..+ ....++..+|.+|... ++++|++++++++.+.+.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP------SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456677688888889999999999999999999998742 2356788899999888 999999999999998665
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 106 ~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
. ..++..+|.+|... |++++|+.+|++++. .+.......++..+|.++...|++++|+.+|+++....+
T Consensus 104 ~------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 104 N------ARVLNNYGGFLYEQ-KRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp C------HHHHHHHHHHHHHT-TCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred c------HHHHHHHHHHHHHH-hHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 3 34799999999997 999999999999998 112223467899999999999999999999999988765
Q ss_pred hhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 186 DSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 186 ~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
..... +...+ .++...++.++|+..+++.....+........ ..+.. ..+++++|+..++++.++
T Consensus 173 ~~~~~-------~~~la--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 173 NQPSV-------ALEMA--DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK-----VFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CCHHH-------HHHHH--HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHH
T ss_pred ccHHH-------HHHHH--HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHH
Confidence 54321 22222 23335577778888887776666666554433 33331 368999999999999987
Q ss_pred hhhHHHHH
Q psy9376 265 DQWYTTVL 272 (320)
Q Consensus 265 d~~~~~~l 272 (320)
+|......
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 66655543
No 33
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=2.5e-14 Score=128.57 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=162.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|.++ |.++...|++++|+..|.+++++.+ ....++..+|.++... ++++
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM------DFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcchHHHHHHHHHHHcCChHH
Confidence 68999999999876 6788899999999999999998842 2346788899999887 9999
Q ss_pred HHHHHHHHHHHHH---HcCChHH------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHH
Q psy9376 92 AIDCLSKAIVIYT---DMGRFTM------AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAH 162 (320)
Q Consensus 92 A~~~~~kA~~l~~---~~~~~~~------aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~ 162 (320)
|+.++++++.+.| ....... ....+..+|.++... |++++|+.+|++++...+.. ..++..+|.
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~ 162 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEVCVWD------AELRELRAE 162 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCc------hHHHHHHHH
Confidence 9999999998766 3332110 011233448899997 99999999999999987764 468999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HH---
Q psy9376 163 HAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RI--- 238 (320)
Q Consensus 163 ~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~--- 238 (320)
++...|++++|+..|+++....+..+. .+...+.+. ...++.++|+..+++.....|........ ..
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTE-------AFYKISTLY--YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHH-------HHHHHHHHH--HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH--HHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 999999999999999999987665442 233333333 34566667777776665555555443211 11
Q ss_pred ----HHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHH
Q psy9376 239 ----LIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTV 271 (320)
Q Consensus 239 ----l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~ 271 (320)
+..+......+++++|+..|+++.+++|-...+
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 270 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY 270 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 000111224689999999999999988876644
No 34
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=1.5e-14 Score=128.74 Aligned_cols=157 Identities=10% Similarity=-0.017 Sum_probs=136.8
Q ss_pred CCCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q psy9376 26 GGNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFK 85 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~ 85 (320)
..|++++|++.+.++ |..+...|++++|+.+|++++++.....++...+.++.++|.+|.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 368999998888654 455677889999999999999987776677778889999999999
Q ss_pred cC-CHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHH
Q psy9376 86 KT-DNEAAIDCLSKAIVIYTDMGRFT-MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHH 163 (320)
Q Consensus 86 ~~-~~~eA~~~~~kA~~l~~~~~~~~-~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~ 163 (320)
.. ++++|+.+|++|+.+....++.. ..+.++.++|.+|... |++++|+.+|++|+++.+..+.....+.++.++|.+
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~ 245 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 98 99999999999999988776543 3448999999999997 999999999999999988777777778999999999
Q ss_pred HHHccCHHHH-HHHHHHHHHh
Q psy9376 164 AALLQNYNKA-IQIYEEVGRT 183 (320)
Q Consensus 164 ~~~~g~y~~A-i~~y~~~~~~ 183 (320)
|..+|++++| ..+|+++...
T Consensus 246 y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 246 LRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHH
Confidence 9999999999 7889998764
No 35
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=2.9e-14 Score=126.89 Aligned_cols=156 Identities=10% Similarity=-0.008 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q psy9376 27 GNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~ 86 (320)
.+++++|...+.++ |..+...|++++|+.+|++++++....++....+.++.++|.+|..
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 56777777776553 5566667899999999999999877777777788899999999999
Q ss_pred C-CHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 87 T-DNEAAIDCLSKAIVIYTDM-GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 87 ~-~~~eA~~~~~kA~~l~~~~-~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
. ++++|+.+|++|+++.... ++....+.++.++|.+|... |++++|++++++|+++.+..++....+.++..+|.++
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 8 9999999999999999888 77888899999999999997 9999999999999999999888888899999999999
Q ss_pred HHcc-CHHHHHHHHHHHHHh
Q psy9376 165 ALLQ-NYNKAIQIYEEVGRT 183 (320)
Q Consensus 165 ~~~g-~y~~Ai~~y~~~~~~ 183 (320)
..+| .+++|+++|+++...
T Consensus 247 ~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHH
Confidence 9999 579999999999865
No 36
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=4.2e-13 Score=122.73 Aligned_cols=228 Identities=9% Similarity=0.013 Sum_probs=174.0
Q ss_pred CCCHHHHHHHHHHH-------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q psy9376 27 GNKIDEAIECYTRA-------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~ 87 (320)
.|++++|...+.++ |..+...|++++|...+++++.+.+..+++...+.++..+|.++...
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 57888888777664 56677889999999999999999999999988889999999999888
Q ss_pred -CHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 88 -DNEAAIDCLSKAIVIYTDMGRF--TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 88 -~~~eA~~~~~kA~~l~~~~~~~--~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
++++|+.++++++.+.+..+.. ...+.++.++|.++... |++++|..++++++.+.+..+... ...++..+|.++
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~ 184 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCS 184 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHH
Confidence 9999999999999999988775 56778899999999997 999999999999999988776544 457889999999
Q ss_pred HHccCHHHHHHHHHHHHHhhhhhhh-hhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCc----H-HHHHHHH
Q psy9376 165 ALLQNYNKAIQIYEEVGRTSLDSSL-LKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDS----R-EYKLLRI 238 (320)
Q Consensus 165 ~~~g~y~~Ai~~y~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s----~-e~~~l~~ 238 (320)
...|++++|+.+++++......... ..+.. ....+...++...++.++|...+.+.....+.. . ....+..
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWIS---NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH---HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHH---HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 9999999999999999865332111 00000 000122233345677888888887765544331 1 1112222
Q ss_pred HHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 239 LIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 239 l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
+. . ..+++++|+..++++..+
T Consensus 262 ~~--~---~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 262 AQ--I---LLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HH--H---HTTCHHHHHHHHHHHHHH
T ss_pred HH--H---HcCCHHHHHHHHHHHHHH
Confidence 22 1 358899999999988764
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=1.1e-14 Score=124.20 Aligned_cols=169 Identities=14% Similarity=0.005 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc------
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK------ 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~------ 86 (320)
.|++++|+..|+++ |.++...|++++|+..|++++++. | ....++.++|.++..
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-----P-RYLGGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHhhhhhh
Confidence 68999999999887 788899999999999999999984 2 235567777877765
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHH
Q psy9376 87 ------TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKV 160 (320)
Q Consensus 87 ------~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~l 160 (320)
.++++|+.++++++++.|+.. .++.++|.+|... |++++|+.+|++++++. . ...++..+
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-~------~~~~~~~l 157 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAERVNPRYA------PLHLQRGLVYALL-GERDKAEASLKQALALE-D------TPEIRSAL 157 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-C------CHHHHHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHc-CChHHHHHHHHHHHhcc-c------chHHHHHH
Confidence 468999999999999987654 3799999999997 99999999999999987 3 25688999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhC
Q psy9376 161 AHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIY 224 (320)
Q Consensus 161 a~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~ 224 (320)
|.++...|++++|+..|+++....|+.+.. +. .+..++...++.++|+..+.+..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~-------~~--~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDL-------RV--RYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHH-------HH--HHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------HH--HHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999887776532 11 22333446788888888877653
No 38
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.9e-13 Score=127.17 Aligned_cols=144 Identities=9% Similarity=0.006 Sum_probs=132.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
.|.+|...|++++|.+.|.+++.+....++..........++.++... ++++|+.++++++.+.+..++....++++.+
T Consensus 61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 378899999999999999999999998887777777888888887776 8999999999999999999988888999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
+|.+|... |++++|+.+++++.......++......++..+|.+|..+|++++|..+|+++....
T Consensus 141 la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 141 LATLHYQK-KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 99999998 999999999999999998888888889999999999999999999999999997653
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.8e-14 Score=133.61 Aligned_cols=214 Identities=5% Similarity=-0.006 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-C-HHHHHHHHHHHHHHHHHcCCh
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-D-NEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~-~~eA~~~~~kA~~l~~~~~~~ 109 (320)
.-.+.+...|.++...|++++|+.+|.+++.+. + ....+|.+.|.++... + +++|+.+|++|+.+.+++..
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~- 167 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-----A-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ- 167 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----c-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH-
Confidence 345567777899999999999999999999984 2 3467899999999888 5 99999999999999887654
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
+|.++|.++... |++++|+.+|++|+++.+.. ..++.++|.++..+|++++|+.+|++++...+++..
T Consensus 168 -----a~~~~g~~~~~~-g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 168 -----VWHHRRVLVEWL-RDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp -----HHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred -----HHHHHHHHHHHc-cCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 899999999997 99999999999999998875 578999999999999999999999999998776553
Q ss_pred hhcchhHhHHHHHHHHHh-hhh-HH--HHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 190 LKYSAKEYFFRAALCHLC-IDV-IN--AHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 190 ~~~~~~~~~~~a~~~~l~-~d~-~~--~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
. |++.+.+... .+. .. ...+++.|.++....|........ ..++ .....+++++|++.++++ ++
T Consensus 236 a-------~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll---~~~g~~~~~~a~~~~~~~-~~ 304 (382)
T 2h6f_A 236 V-------WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL---QDRGLSKYPNLLNQLLDL-QP 304 (382)
T ss_dssp H-------HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH---TTTCGGGCHHHHHHHHHH-TT
T ss_pred H-------HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HccCccchHHHHHHHHHh-cc
Confidence 2 3333333332 111 12 233345555554444544443332 3333 222234789999998887 76
Q ss_pred hhhHHHHHHHH
Q psy9376 265 DQWYTTVLLRI 275 (320)
Q Consensus 265 d~~~~~~l~~i 275 (320)
+|-...++..+
T Consensus 305 ~p~~~~al~~L 315 (382)
T 2h6f_A 305 SHSSPYLIAFL 315 (382)
T ss_dssp TCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 55554444333
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.5e-13 Score=117.98 Aligned_cols=184 Identities=17% Similarity=0.147 Sum_probs=145.6
Q ss_pred CCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA-------------ANMFKMAKKWNNAGKAFVEAANLHMKSG-TKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~-~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|.++ |.++...|++++|+.+|.+++++.+..+ +....+.++..+|.+|... ++++
T Consensus 18 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97 (258)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHH
Confidence 68999999999876 6788899999999999999999988764 4445588999999999998 9999
Q ss_pred HHHHHHHHHHHHHHc------C--------------ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 92 AIDCLSKAIVIYTDM------G--------------RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 92 A~~~~~kA~~l~~~~------~--------------~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
|+.++++++.+.+.. | .....+.++..+|.++... |++++|+.+|++++.+.+..
T Consensus 98 A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~---- 172 (258)
T 3uq3_A 98 TIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPED---- 172 (258)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCccc----
Confidence 999999999853211 1 2334567899999999997 99999999999999987764
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCC
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPA 226 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~ 226 (320)
..++..+|.++...|++++|+.+|+++....++.+.. +...+.++. ..++.++|++.++++...
T Consensus 173 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 173 --ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA-------YIRKATAQI--AVKEYASALETLDAARTK 236 (258)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHH-------HHHHHHHHH--HHhhHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999876654321 333333332 445666666666554333
No 41
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.61 E-value=4.2e-14 Score=125.94 Aligned_cols=215 Identities=12% Similarity=0.080 Sum_probs=160.3
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~ 90 (320)
.|++++|+..|+++ +.++...|++++|+..+.++++..+ .....+..+|.++... +++
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP------SNPVSWFAVGCYYLMVGHKNE 108 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TSTHHHHHHHHHHHHSCSCHH
T ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHhhhhHH
Confidence 68999999999886 5677888999999999999998742 2346788888888776 799
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|+.++++++.+.+.... ++..+|.+|... |++++|+.+|++++.+.+.. ...+..+|.++...|++
T Consensus 109 ~A~~~~~~a~~~~~~~~~------~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGP------AWIAYGHSFAVE-SEHDQAMAAYFTAAQLMKGC------HLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHHHHHTTCTTCTH------HHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTC------SHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCCccHH------HHHHHHHHHHHc-cCHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHhhH
Confidence 999999999998776654 799999999997 99999999999999998774 34677799999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCc---------cCc-HHHHHHHHHH
Q psy9376 171 NKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAF---------QDS-REYKLLRILI 240 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f---------~~s-~e~~~l~~l~ 240 (320)
++|+++|+++....+..... +...+.+. ...++.++|+..++++.... +.. .-...+..++
T Consensus 176 ~~A~~~~~~al~~~~~~~~~-------~~~l~~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFV-------MHEVGVVA--FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHH-------HHHHHHHH--HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHH-------HHHHHHHH--HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999999999876654422 22233333 23455556666555443322 111 1222233332
Q ss_pred HHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 241 EHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 241 ~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
...+++++|+..|+++.+++|....++..
T Consensus 247 -----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 275 (330)
T 3hym_B 247 -----RKLKKYAEALDYHRQALVLIPQNASTYSA 275 (330)
T ss_dssp -----HHTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred -----HHhcCHHHHHHHHHHHHhhCccchHHHHH
Confidence 14689999999999999877665555433
No 42
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.61 E-value=1.6e-13 Score=128.01 Aligned_cols=171 Identities=14% Similarity=0.096 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
++++|+.++++++.+.+.. ..++..+|.+|... |++++|+.+|++++...+.. ..++..+|.++...
T Consensus 158 ~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWD------AELRELRAECFIKE-GEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQL 224 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc
Confidence 5555555555555544322 23677888888886 99999999999998887653 56888999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH----HHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH--HHHHHHHH
Q psy9376 168 QNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF----RAALCHLCIDVINAHNAIDRYKTIYPAFQDSREY--KLLRILIE 241 (320)
Q Consensus 168 g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~----~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~--~~l~~l~~ 241 (320)
|++++|+..|+++....++...... ...... ...+...+...++.++|+..|.++....|.+... .....+..
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFA-HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 9999999999999877665443210 000000 0001222234566777777776665555554432 12223322
Q ss_pred HHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 242 HIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 242 a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
.+ ...+++++|+..|+++.+++|....++..
T Consensus 304 ~~--~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 304 CF--SKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HH--HTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HH--HHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 22 25788899999999888888876666543
No 43
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.60 E-value=7.7e-15 Score=133.69 Aligned_cols=213 Identities=11% Similarity=-0.020 Sum_probs=153.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+...|..+...|++++|+..|++++.+.+ ..+.++..+|.+|... ++++|+.+|++++.+.|.. +.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 135 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP------GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN------LKA 135 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHH
Confidence 44457888899999999999999998842 2467899999999988 9999999999999987654 348
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh--hhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS----SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD--SSL 189 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~----~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~--~~~ 189 (320)
+..+|.+|... |++++|+.+|++++.+.+...... .....+..+|.++...|++++|+.+|+++....+. .+.
T Consensus 136 ~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 136 LMALAVSYTNT-SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHHcc-ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 99999999997 999999999999999887753322 12455667899999999999999999999988665 222
Q ss_pred hhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhH
Q psy9376 190 LKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWY 268 (320)
Q Consensus 190 ~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~ 268 (320)
.++..+.+ +...++.++|++.|+++....|.+...... ..++ . ..+++++|+..|+++++++|..
T Consensus 215 -------~~~~l~~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~---~--~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 215 -------LQTGLGVL--FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL---A--NGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp -------HHHHHHHH--HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---H--HTTCHHHHHHHHHHHHHHCTTC
T ss_pred -------HHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---H--HcCCHHHHHHHHHHHHhcCCCc
Confidence 12333333 335577778888887766666665443322 3322 1 4789999999999999998887
Q ss_pred HHHHHHHH
Q psy9376 269 TTVLLRIK 276 (320)
Q Consensus 269 ~~~l~~i~ 276 (320)
..++..+.
T Consensus 281 ~~~~~~l~ 288 (365)
T 4eqf_A 281 IRSRYNLG 288 (365)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 77765554
No 44
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.60 E-value=6.2e-14 Score=130.91 Aligned_cols=227 Identities=17% Similarity=0.105 Sum_probs=167.8
Q ss_pred CCCHHHHHHHHHHH-----------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 27 GNKIDEAIECYTRA-----------------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNL 77 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~ 77 (320)
.|++++|+..|.++ |..+...|++++|+..|++++++.+ .....+
T Consensus 107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~ 180 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV------WDAELR 180 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHH
Confidence 57888888888776 4447889999999999999998742 245678
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH---
Q psy9376 78 LDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA--- 153 (320)
Q Consensus 78 ~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a--- 153 (320)
..+|.+|... ++++|+.++++++.+.+.+ +.++..+|.+|... |++++|+.+|++++.+.+........
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQL-GDHELSLSEVRECLKLDQDHKRCFAHYKQ 253 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 8899999988 9999999999999987654 34899999999997 99999999999999887764221110
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCc
Q psy9376 154 ---NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDS 230 (320)
Q Consensus 154 ---~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s 230 (320)
......+|.++...|++++|+.+|+++....++++... ...+.. +..++...++.++|+..++++....|..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~--l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 328 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT---VRSKER--ICHCFSKDEKPVEAIRVCSEVLQMEPDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH---HHHHHH--HHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH---HHHHHH--HHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 01124449999999999999999999998766543210 011222 2223345677788888887766556655
Q ss_pred HHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 231 REYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 231 ~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
...... ..++ . ..+++++|+..|+++.+++|-...++..+.
T Consensus 329 ~~~~~~l~~~~---~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 329 VNALKDRAEAY---L--IEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHH---H--HTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHH---H--HhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 544332 3332 1 468999999999999999998887765554
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.60 E-value=1.1e-13 Score=120.57 Aligned_cols=191 Identities=18% Similarity=0.157 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
+..+| ..|..+...|++++|+..|+++++.++. ......++..+|.+|... ++++|+..|++++.++|++..
T Consensus 15 ~~~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~--- 87 (261)
T 3qky_A 15 PQEAF-ERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR--- 87 (261)
T ss_dssp HHHHH-HHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---
T ss_pred HHHHH-HHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---
Confidence 33444 4578888899999999999999987532 223477899999999988 999999999999999886644
Q ss_pred HHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHhHhhccCCchHHH-----------HHHHHHHHHHHHccCHHH
Q psy9376 112 AAKHHQTIAEIYET--------DCVDQEKAVEHYEQAATYFKGEESNSSAN-----------KCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 112 aa~~~~~la~~y~~--------~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~-----------~~~~~la~~~~~~g~y~~ 172 (320)
...++..+|.+|.. . |++++|+..|++++..+|.......+. ..+..+|.+|...|++++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 34579999999998 8 999999999999999998865422221 112789999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh--------hhHHHHHHHHHHHHhCCCccCcHHHHH
Q psy9376 173 AIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI--------DVINAHNAIDRYKTIYPAFQDSREYKL 235 (320)
Q Consensus 173 Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--------d~~~~~~A~~~y~~~~~~f~~s~e~~~ 235 (320)
|+..|+++....|+.+.. ...++..+.++... ..++.++|+..|+++...+|++.....
T Consensus 167 A~~~~~~~l~~~p~~~~~----~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWA----DDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHHHHHCTTSTTH----HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHCCCCchH----HHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 999999999887764421 12234444444322 237778888888877777777655443
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=2.4e-14 Score=117.80 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|++.|+++ |.+|...|++++|+..+.++....+ ....++...|.++... +++.
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------TSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------hhHHHHHHHHHHHHHcCCHHH
Confidence 68999999999987 7788999999999999999988742 2356677888888887 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+..+.+++.+.|.... ++..+|.+|... |++++|+++|++++++.|.. ..++..+|.+|..+|+++
T Consensus 92 a~~~~~~a~~~~~~~~~------~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 92 AIDALQRAIALNTVYAD------AYYKLGLVYDSM-GEHDKAIEAYEKTISIKPGF------IRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHHHHHCTTCHH------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCccchH------HHHHHHHHHHHh-CCchhHHHHHHHHHHhcchh------hhHHHHHHHHHHHCCCHH
Confidence 99999999998876543 799999999997 99999999999999998764 578999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy9376 172 KAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~~ 188 (320)
+|++.|+++....|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999998776543
No 47
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.60 E-value=4.5e-14 Score=134.69 Aligned_cols=220 Identities=13% Similarity=0.036 Sum_probs=161.5
Q ss_pred CCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHH
Q psy9376 27 GNKIDEAIECYTRA-------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAA 92 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA 92 (320)
.|++++|+..|.++ |.++...|++++|+.+|++++++.+ ....++..+|.++... ++++|
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP------EYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHhcCCHHHH
Confidence 56788888777766 4556667888888888888887642 2345688888888887 89999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 93 IDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
+.++++++.+.+.... ++..+|.+|... |++++|+.+|+++++..+.. ..++..+|.++...|++++
T Consensus 330 ~~~~~~a~~~~~~~~~------~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVY------PYIQLACLLYKQ-GKFTESEAFFNETKLKFPTL------PEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHHHHHHHCTTCSH------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHH
Confidence 9999999988776654 788999999997 99999999999999987764 3578889999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhh----------HHHHHHHHHHHHhCCCccCcHHHHHH-HHHHH
Q psy9376 173 AIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDV----------INAHNAIDRYKTIYPAFQDSREYKLL-RILIE 241 (320)
Q Consensus 173 Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~----------~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~ 241 (320)
|+..|+++....++.+...+ ..+.++..+.+ +... ++.++|+..|.++....|...+.... ..++.
T Consensus 397 A~~~~~~a~~~~~~~~~~~~-~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHV-GIGPLIGKATI--LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSS-TTHHHHHHHHH--HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcchhhHH-HHHHHHHHHHH--HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999887665543322 12222222222 2233 88889999888776666666554432 43332
Q ss_pred HHHhcCHhHHHHHHHHHhhhcchhhhHHHHHH
Q psy9376 242 HIEEQNVDGFTEAVKDYDSISRLDQWYTTVLL 273 (320)
Q Consensus 242 a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~ 273 (320)
..+++++|+..|+++.+++|.......
T Consensus 474 -----~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 474 -----QMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -----HTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred -----HhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 468999999999999998887766643
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=6.5e-14 Score=121.72 Aligned_cols=202 Identities=9% Similarity=-0.023 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
-...+...|.++...|++++|+.+|++++++.+ ....++..+|.+|... ++++|+.++++++.+.|.+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--- 112 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY--- 112 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH---
Confidence 344444557888899999999999999999842 2356788899999888 999999999999999876543
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhh
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLK 191 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~ 191 (320)
++..+|.+|... |++++|+.+|++++.+.+... .... ...+....|++++|+..|+++....+.....
T Consensus 113 ---~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~------~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~- 180 (275)
T 1xnf_A 113 ---AHLNRGIALYYG-GRDKLAQDDLLAFYQDDPNDP------FRSL-WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG- 180 (275)
T ss_dssp ---HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCH------HHHH-HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-
T ss_pred ---HHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCh------HHHH-HHHHHHHhcCHHHHHHHHHHHHhcCCcchHH-
Confidence 899999999997 999999999999999877642 1222 2234466799999999999988765543321
Q ss_pred cchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHH--HHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 192 YSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSRE--YKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 192 ~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e--~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
+ .+..++...++..+|++.+.+.....+.... ......+...+ ...+++++|+..|+++..++|
T Consensus 181 ------~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 181 ------W---NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY--LSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp ------H---HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCC
T ss_pred ------H---HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCc
Confidence 1 1222233334446888888887766554311 12222232222 246899999999999998655
No 49
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=2.3e-14 Score=143.09 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHH
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMA 112 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~a 112 (320)
.+.+...|.++..+|++++|+.+|++|+++.+ ..+.++.++|.+|... ++++|+.+|++|+++.++..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~----- 77 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA----- 77 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Confidence 45566789999999999999999999999842 2467899999999998 99999999999999987653
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.++.++|.+|... |++++|+++|++|+++.+.. ..++.++|.+|..+|++++|++.|+++....++...
T Consensus 78 -~a~~nLg~~l~~~-g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 78 -DAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146 (723)
T ss_dssp -HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred -HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 4899999999997 99999999999999997764 678999999999999999999999999988776543
No 50
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.59 E-value=9.3e-14 Score=134.56 Aligned_cols=213 Identities=9% Similarity=-0.005 Sum_probs=143.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|..|...|++++|...|+++.++.+ .....|..++.+|... ++++|+++|++++.+.+.+. .++..+
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l 447 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDP------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH------LPYLFL 447 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS------HHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------HHHHHH
Confidence 4566666777777777777766521 1234666777777776 88888888888887766543 368888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
|.+|... |++++|+++|++++++.+.. ..++..+|.++...|++++|+++|+++....++.+.........+.
T Consensus 448 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 448 GMQHMQL-GNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 8888887 99999999999998876653 4678899999999999999999999988764321100000011222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHH-HHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHh
Q psy9376 200 RAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYK-LLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQ 278 (320)
Q Consensus 200 ~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~-~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~ 278 (320)
..+. ++...++.++|++.++++....|...... .+..++. ..+++++|+..|+++.+++|.....+..+.+.
T Consensus 521 ~l~~--~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 521 NLGH--AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL-----HKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHH--HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHH--HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 2222 22345666777777766555455544333 2343332 46899999999999999888877777666544
Q ss_pred h
Q psy9376 279 V 279 (320)
Q Consensus 279 ~ 279 (320)
+
T Consensus 594 ~ 594 (597)
T 2xpi_A 594 L 594 (597)
T ss_dssp T
T ss_pred H
Confidence 4
No 51
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=6.6e-14 Score=124.52 Aligned_cols=208 Identities=12% Similarity=0.025 Sum_probs=155.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|+++ |.++...|++++|+.+|++++++.+ ....++..+|.++... ++++
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------CCHHHHHHHHHHHHHcCCHHH
Confidence 67899999988876 6788889999999999999998842 2356788889999888 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHH--------------HH-HHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTI--------------AE-IYETDCVDQEKAVEHYEQAATYFKGEESNSSANKC 156 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~l--------------a~-~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~ 156 (320)
|+.++++++...+.... .+..+ |. ++... |++++|+.++++++...+.. ..+
T Consensus 108 A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~ 174 (327)
T 3cv0_A 108 ALASLRAWLLSQPQYEQ------LGSVNLQADVDIDDLNVQSEDFFFAAP-NEYRECRTLLHAALEMNPND------AQL 174 (327)
T ss_dssp HHHHHHHHHHTSTTTTT------C--------------------CCTTSH-HHHHHHHHHHHHHHHHSTTC------HHH
T ss_pred HHHHHHHHHHhCCccHH------HHHHHhHHHHHHHHHHHHHHhHHHHHc-ccHHHHHHHHHHHHhhCCCC------HHH
Confidence 99999999998776655 23333 55 46776 99999999999999987763 578
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH
Q psy9376 157 LLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL 236 (320)
Q Consensus 157 ~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l 236 (320)
+..+|.++...|++++|+.+|+++....++.... +...+.+. ...++.++|+..++++....|........
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL-------WNKLGATL--ANGNRPQEALDAYNRALDINPGYVRVMYN 245 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHH--HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 8999999999999999999999999876654321 23333333 34566777777777665555555544332
Q ss_pred -HHHHHHHHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 237 -RILIEHIEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 237 -~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
..+. . ..+++++|+..|+++.+++|.
T Consensus 246 l~~~~--~---~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 246 MAVSY--S---NMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHH--H---HTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHH--H---HhccHHHHHHHHHHHHHhCCc
Confidence 3332 1 468999999999999987665
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1.2e-14 Score=126.44 Aligned_cols=198 Identities=11% Similarity=0.032 Sum_probs=146.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 38 TRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 38 ~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
..-|..+...|++++|+..|+++++..+. ...++..+|.+|... ++++|+.++++++. .+ +++...+.++
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~ 77 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN------SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKSADF 77 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHHHHH
Confidence 34578888899999999999999987532 234688888998888 99999999999998 33 3444456779
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhH
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKE 196 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~ 196 (320)
..+|.+|... |++++|+.+|++++++.+.. ..++..+|.++...|++++|+++|+++....+....
T Consensus 78 ~~lg~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------- 143 (272)
T 3u4t_A 78 EYYGKILMKK-GQDSLAIQQYQAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK------- 143 (272)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH-------
T ss_pred HHHHHHHHHc-ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH-------
Confidence 9999999997 99999999999999988774 368999999999999999999999999877554432
Q ss_pred hHHHHH-HHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 197 YFFRAA-LCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 197 ~~~~a~-~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
.++..+ .++... +.++|++.++++....|........ ..+.. ..++...+++|+..|+++++
T Consensus 144 ~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 144 VFYELGQAYYYNK---EYVKADSSFVKVLELKPNIYIGYLWRARANA--AQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccchHHHHHHHHHHH--HcCcchhhHHHHHHHHHHHH
Confidence 233334 443322 5566666666655555555444333 33332 12233337788888888876
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=6.1e-14 Score=132.03 Aligned_cols=225 Identities=9% Similarity=-0.061 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGT---KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~---~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
+..|...|.++...|++++|+++|++|+++.+.... ....+.+|.++|.+|... ++++|+.++++++.+.+....+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456777899999999999999999999999876442 234678899999999998 9999999999999999987543
Q ss_pred --HHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHh
Q psy9376 110 --TMAAKHHQTIAEIYETD-CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA---ALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 110 --~~aa~~~~~la~~y~~~-l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~---~~~g~y~~Ai~~y~~~~~~ 183 (320)
...+.++.++|.++... .+++++|+++|++|+++.|.. ..++..+|.++ ...+++++|++.|+++...
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 23466788888766552 157999999999999998764 34566666664 4567889999999999987
Q ss_pred hhhhhhhhcchhHhHHHHHHH--HHhhhhHHHHHHHHHHHHhCCCccCcHHHHH-HHHHHHHHHhcCHhHHHHHHHHHhh
Q psy9376 184 SLDSSLLKYSAKEYFFRAALC--HLCIDVINAHNAIDRYKTIYPAFQDSREYKL-LRILIEHIEEQNVDGFTEAVKDYDS 260 (320)
Q Consensus 184 ~~~~~~~~~~~~~~~~~a~~~--~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~-l~~l~~a~~~~d~~~~~~Ai~~ye~ 260 (320)
.++.+.. +...+.. .+....++.++|...++++....|....... ++.++ ...+++++|+..|++
T Consensus 205 ~p~~~~~-------~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~-----~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 205 NPDNQYL-------KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY-----RRKDEPDKAIELLKK 272 (472)
T ss_dssp CSSCHHH-------HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHH-----HHTTCHHHHHHHHHH
T ss_pred CCcchHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHH-----HHcCchHHHHHHHHH
Confidence 7665432 1111222 1222345566666666655454455444332 23332 247899999999999
Q ss_pred hcchhhhHHHHHHHHH
Q psy9376 261 ISRLDQWYTTVLLRIK 276 (320)
Q Consensus 261 ~~~ld~~~~~~l~~i~ 276 (320)
+.+++|....++..+.
T Consensus 273 al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 273 ALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHSTTCHHHHHHHH
T ss_pred HHHhCCChHHHHHHHH
Confidence 9999998887765543
No 54
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.56 E-value=9.5e-14 Score=126.02 Aligned_cols=210 Identities=11% Similarity=0.068 Sum_probs=148.3
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|.++ |.++...|++++|+.+|++++++.+ ....++..+|.+|... ++++
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP------DNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHH
Confidence 67899999988877 6788889999999999999988742 1344566666776666 6677
Q ss_pred HHHHHHHHHHHHHHcCChHH---------------------------------------------HHHHHHHHHHHHHhc
Q psy9376 92 AIDCLSKAIVIYTDMGRFTM---------------------------------------------AAKHHQTIAEIYETD 126 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~---------------------------------------------aa~~~~~la~~y~~~ 126 (320)
|+.++++++.+.+....... .+.++..+|.+|...
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence 77766666655443221110 356789999999997
Q ss_pred cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHH
Q psy9376 127 CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHL 206 (320)
Q Consensus 127 l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 206 (320)
|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+..|+++....++.... +...+.++
T Consensus 231 -g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~l~~~~- 295 (368)
T 1fch_A 231 -GEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS-------RYNLGISC- 295 (368)
T ss_dssp -TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHH-
T ss_pred -CCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHH-
Confidence 99999999999999987664 5689999999999999999999999999876654321 23333333
Q ss_pred hhhhHHHHHHHHHHHHhCCCccCc-----------HHH-HHHHHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 207 CIDVINAHNAIDRYKTIYPAFQDS-----------REY-KLLRILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 207 ~~d~~~~~~A~~~y~~~~~~f~~s-----------~e~-~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
...++.++|+..|++.....|.. ... ..+..++. ..+++++|..++++...
T Consensus 296 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 296 -INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS-----MLGQSDAYGAADARDLS 358 (368)
T ss_dssp -HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH-----HHTCGGGHHHHHTTCHH
T ss_pred -HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH-----HhCChHhHHHhHHHHHH
Confidence 34566666776666554444443 222 22233332 36788888888886654
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.9e-14 Score=122.88 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
+-....+...|..+...|++++|+..|++++... + .....+..+|.++... ++++|+.++++++.+.+..
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--- 90 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----K-EDAIPYINFANLLSSVNELERALAFYDKALELDSSA--- 90 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---
Confidence 3444555566888889999999999999998853 2 2356788889998887 9999999999999886654
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
+.++..+|.+|... |++++|+.+|+++++..+.. ..++..+|.++...|++++|+.+|+++....++...
T Consensus 91 ---~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 91 ---ATAYYGAGNVYVVK-EMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp ---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---hHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 34799999999997 99999999999999988764 467899999999999999999999999887665432
Q ss_pred hhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhH
Q psy9376 190 LKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWY 268 (320)
Q Consensus 190 ~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~ 268 (320)
. +...+.+. ...++.++|+..+++.....+........ ..+. ...+++++|+..|+++.+++|..
T Consensus 161 ~-------~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-----~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 161 A-------RFQFGMCL--ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY-----AYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp H-------HHHHHHHH--HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----HHTTCTTHHHHHHHHHHHHCTTC
T ss_pred H-------HHHHHHHH--HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-----HHccCHHHHHHHHHHHHccCcch
Confidence 1 22223332 34455566666666554444554443322 3332 13689999999999999987777
Q ss_pred HHHHHHH
Q psy9376 269 TTVLLRI 275 (320)
Q Consensus 269 ~~~l~~i 275 (320)
..++..+
T Consensus 227 ~~~~~~~ 233 (243)
T 2q7f_A 227 MLALHAK 233 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=2.9e-13 Score=118.53 Aligned_cols=210 Identities=16% Similarity=0.151 Sum_probs=152.7
Q ss_pred CCCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----
Q psy9376 27 GNKIDEAIECYTRA------------ANMFKM----AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK---- 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a------------g~~~~~----~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~---- 86 (320)
.+++++|+.+|.++ |.+|.. .+++++|+.+|+++++.. ...++.++|.+|..
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhCCCCc
Confidence 57899999888876 678888 999999999999998762 35678889999987
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 87 T-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET----DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 87 ~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~----~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
. ++++|+.+|++|++. ++ +.++.++|.+|.. . +++++|+.+|++|++.- ...++..+|
T Consensus 91 ~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~--------~~~a~~~lg 153 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDL----KY----AEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDLN--------DGDGCTILG 153 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHc----CC----ccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhcC--------cHHHHHHHH
Confidence 5 899999999999875 32 3578999999998 7 99999999999999853 145788899
Q ss_pred HHHHH----ccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCCCccCcHHHHH
Q psy9376 162 HHAAL----LQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI--DVINAHNAIDRYKTIYPAFQDSREYKL 235 (320)
Q Consensus 162 ~~~~~----~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~f~~s~e~~~ 235 (320)
.++.. .+++++|+..|+++...... ..++..+.++..- ..++.++|+..|+++...-+ ..-...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~ 223 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDS---------PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFN 223 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHH
Confidence 99998 89999999999998865321 1122333333220 15677778877776544322 222222
Q ss_pred HHHHHHHHHh--cCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 236 LRILIEHIEE--QNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 236 l~~l~~a~~~--~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
+..++ .. +..+++++|++.|+++.+++|......+.
T Consensus 224 l~~~~---~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 224 LGAMQ---YNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHH---HTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHH---HcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33332 21 12678999999999999988876665443
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=3.4e-13 Score=113.29 Aligned_cols=209 Identities=11% Similarity=0.009 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
-...+...|..+...|++++|+.+|+++++..+ .....+..+|.++... ++++|+.++++++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----- 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----
Confidence 345566678899999999999999999998743 2356788889998887 9999999999999887654
Q ss_pred HHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 112 AAKHHQTIAEIYETDC-VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 112 aa~~~~~la~~y~~~l-~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
+.++..+|.+|.. . |++++|+.+|++++. .+. ......++..+|.++...|++++|+.+|+++....++....
T Consensus 76 -~~~~~~l~~~~~~-~~~~~~~A~~~~~~~~~-~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 149 (225)
T 2vq2_A 76 -AEINNNYGWFLCG-RLNRPAESMAYFDKALA-DPT---YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149 (225)
T ss_dssp -HHHHHHHHHHHHT-TTCCHHHHHHHHHHHHT-STT---CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred -hHHHHHHHHHHHH-hcCcHHHHHHHHHHHHc-CcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH
Confidence 3378999999988 7 899999999999998 222 22246788999999999999999999999998876654321
Q ss_pred hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc-CcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHH
Q psy9376 191 KYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ-DSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYT 269 (320)
Q Consensus 191 ~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~-~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~ 269 (320)
+...+.+ +...++.++|+..+++.....| .+.....+...+. . ..+++++|...++.+.+++|...
T Consensus 150 -------~~~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 150 -------FKELART--KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA-K---ALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp -------HHHHHHH--HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-H---HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred -------HHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-H---hcCcHHHHHHHHHHHHHhCCCCH
Confidence 2222333 2345666777777766655556 5555443322221 1 35778888888888877555444
Q ss_pred HH
Q psy9376 270 TV 271 (320)
Q Consensus 270 ~~ 271 (320)
..
T Consensus 217 ~~ 218 (225)
T 2vq2_A 217 EL 218 (225)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 58
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.56 E-value=3.4e-13 Score=119.85 Aligned_cols=149 Identities=15% Similarity=0.038 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 36 ~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
.+...+..+...|++++|++.+.++++..+...........+..+|.++... ++++|+.++++|+.+.+...+....+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444567778899999999999999987543333334556677788888887 999999999999998887777777889
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS-ANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~-a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
++.++|.+|... |++++|+.+|++|+++++..+.... ...++.++|.+|..+|+|++|+++|+++.....
T Consensus 157 ~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 157 IENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999997 9999999999999998877654333 348999999999999999999999999987653
No 59
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.54 E-value=5.8e-13 Score=112.55 Aligned_cols=187 Identities=12% Similarity=0.044 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChHHHH
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAA 113 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~~~~aa 113 (320)
++.+..-|..+...|++++|+.+|++++.+. |. .+.++...+ .. .......
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~~~-----~~------------------~~~~~~~ 54 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-----ID-RTEMYYWTN-----VD------------------KNSEISS 54 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----HH-HHHHHHHHH-----SC------------------TTSHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-ChHHHHHhh-----hc------------------chhhhhH
Confidence 3445555666667777777777777776663 22 222332211 00 0111223
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcc
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYS 193 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~ 193 (320)
....++|.+|... |++++|+.+|++++++.|.. ..++..+|.++...|++++|+..|+++....|+++..
T Consensus 55 ~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a--- 124 (208)
T 3urz_A 55 KLATELALAYKKN-RNYDKAYLFYKELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA--- 124 (208)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH---
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---
Confidence 3455699999997 99999999999999998875 5789999999999999999999999999988776532
Q ss_pred hhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhH
Q psy9376 194 AKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWY 268 (320)
Q Consensus 194 ~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~ 268 (320)
+++.+.++..........+...|..+...-+.... .....+. ....++|++|+..|+++++++|..
T Consensus 125 ----~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~g~~----~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 125 ----NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA-RYRDGLS----KLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHH-HHHHHHH----HHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHH-HHHHHHH----HHHccCHHHHHHHHHHHHHhCCCH
Confidence 34445544333334445556666554332221111 1111211 113689999999999999988854
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=5.6e-14 Score=140.32 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+.+|++| |.+|...|++++|+.+|++|+++. + ..+.+|.++|.+|... ++++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----P-~~~~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----P-TFADAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHH
Confidence 68999999999988 789999999999999999999984 2 3467899999999998 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+++|++|+++.+++. .++.++|.+|... |++++|+.+|++|+++.++. ..++.++|.++..+|+++
T Consensus 96 A~~~~~kAl~l~P~~~------~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~------~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 96 ALQCYTRAIQINPAFA------DAHSNLASIHKDS-GNIPEAIASYRTALKLKPDF------PDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------hHHHhhhhhHHHhcccHH
Confidence 9999999999987653 4899999999997 99999999999999998774 578999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy9376 172 KAIQIYEEVGRTSL 185 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~ 185 (320)
+|++.|+++....+
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999987543
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.54 E-value=1.2e-12 Score=113.53 Aligned_cols=136 Identities=15% Similarity=0.043 Sum_probs=114.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSG--TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM--GRFTMAAKHHQTIAE 121 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~--~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~--~~~~~aa~~~~~la~ 121 (320)
.|++++|+..|++|+++..+.. ++...+.++..+|.+|... ++++|+.++++++.+.... ++....+.++..+|.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4566666666666666665442 4456788999999999988 9999999999999999877 667788899999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 122 IYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 122 ~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+|... |++++|+.+|++++.+++.. ........++..+|.++...|++++|+.+|+++...
T Consensus 94 ~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 94 LYGKR-GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99997 99999999999999998664 223566889999999999999999999999999876
No 62
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=5.5e-14 Score=132.37 Aligned_cols=215 Identities=14% Similarity=-0.007 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhccCC
Q psy9376 54 GKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR---FTMAAKHHQTIAEIYETDCVD 129 (320)
Q Consensus 54 ~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~---~~~aa~~~~~la~~y~~~l~~ 129 (320)
+..+++.+.......+....+..|..+|.++... ++++|+++|++|+++.+.... ....+.++.++|.+|... |+
T Consensus 31 l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~ 109 (472)
T 4g1t_A 31 LDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GR 109 (472)
T ss_dssp HHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CC
Confidence 3344444444434445556678899999999887 999999999999999886543 234567899999999997 99
Q ss_pred HHHHHHHHHHHHhHhhccCCc--hHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHH
Q psy9376 130 QEKAVEHYEQAATYFKGEESN--SSANKCLLKVAHHAALLQ--NYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCH 205 (320)
Q Consensus 130 ~~~Ai~~y~kA~~~~~~~~~~--~~a~~~~~~la~~~~~~g--~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (320)
+++|+.+|++++.+.+..... ...+.++..+|.++...| +|++|+++|+++....|+++.. +...+.+.
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~-------~~~~~~~~ 182 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF-------TSGLAIAS 182 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH-------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHH
Confidence 999999999999998765432 234677888888877654 7999999999999988776532 22222222
Q ss_pred Hh-hhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 206 LC-IDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 206 l~-~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
.. .+.++.++|++.|+++....|..........+...-.....+++++|++.|+++..++|....++..+.
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 21 134555667777766555555554433221111111123567899999999999999999988876554
No 63
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.53 E-value=3.8e-13 Score=119.54 Aligned_cols=151 Identities=14% Similarity=0.032 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHH
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAA 113 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa 113 (320)
..+.+.+..+...|++++|...++++++......+.......+..+|.++... ++++|+.++++|+.+.+..++....+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 33444456677789999999999999885332222222255666688888877 99999999999999888778877888
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc-CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE-ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~-~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
.++.++|.+|... |++++|+.+|++|+++++.. +.......++.++|.+|..+|+|++|+++++++....+.
T Consensus 156 ~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 156 YIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8999999999997 99999999999999998876 567777889999999999999999999999999876543
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.2e-13 Score=117.32 Aligned_cols=191 Identities=9% Similarity=-0.051 Sum_probs=140.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET 125 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~ 125 (320)
.|++++|+..|.++++.. ..+++..+..+..+|.++... ++++|+.++++++.+.|... .++..+|.+|..
T Consensus 18 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~ 89 (275)
T 1xnf_A 18 TLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQ 89 (275)
T ss_dssp CHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHH
Confidence 356777777777777652 123456788899999999988 99999999999999876543 379999999999
Q ss_pred ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHH
Q psy9376 126 DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCH 205 (320)
Q Consensus 126 ~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (320)
. |++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|+++....++.+.. ......+
T Consensus 90 ~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~- 154 (275)
T 1xnf_A 90 A-GNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR-------SLWLYLA- 154 (275)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHH-
T ss_pred c-cCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH-------HHHHHHH-
Confidence 7 99999999999999997764 4689999999999999999999999999876665421 1111111
Q ss_pred HhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 206 LCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 206 l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
...++.++|+..+.+.....+.......+..+. + ..+.+++|+..++++...+|-
T Consensus 155 --~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 155 --EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY--L---GNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp --HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHH--T---TSSCHHHHHHHHHHHCCSHHH
T ss_pred --HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHH--H---HhcCHHHHHHHHHHHhccccc
Confidence 234666777777765544444443333222222 1 345568999999999887664
No 65
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.52 E-value=5.6e-13 Score=129.03 Aligned_cols=175 Identities=14% Similarity=0.110 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS 152 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~ 152 (320)
...+..+|.+|... ++++|+++|++++.+.+... .++..+|.+|... |++++|+++|++++...+..
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~----- 440 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG------PAWIGFAHSFAIE-GEHDQAISAYTTAARLFQGT----- 440 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc-----
Confidence 45667778888887 89999999999988765432 3788999999997 99999999999999887653
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCC------
Q psy9376 153 ANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPA------ 226 (320)
Q Consensus 153 a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~------ 226 (320)
..++..+|.++...|++++|+++|+++....+.++.. +...+.+ +...++.++|++.++++...
T Consensus 441 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 441 -HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL-------LNELGVV--AFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp -SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH-------HHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------HHHHHHH--HHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 3578889999999999999999999998776654422 2222222 23456666666666654332
Q ss_pred ccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHH
Q psy9376 227 FQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLL 273 (320)
Q Consensus 227 f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~ 273 (320)
-|.. .......++..+. ..+++++|+..|+++.+++|....++.
T Consensus 511 ~p~~-~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 511 NEKP-WAATWANLGHAYR--KLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp CSGG-GHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred chhh-HHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 2221 0122233332222 468999999999999986655444443
No 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.52 E-value=7.4e-13 Score=126.28 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=152.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
..|..+...|++++|+..|++++++. +. ...+..+|.++... ++++|+.++++++.+.+... .++.
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 314 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH-----PT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP------PTYY 314 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----CC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH------HHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-----CC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH------HHHH
Confidence 33677888999999999999999873 33 57788899999888 99999999999999877543 3799
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHh
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEY 197 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~ 197 (320)
.+|.+|... |++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|+++....++.+..
T Consensus 315 ~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------- 380 (537)
T 3fp2_A 315 HRGQMYFIL-QDYKNAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV------- 380 (537)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH-------
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------
Confidence 999999997 99999999999999987764 3578999999999999999999999999876665432
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc---Cc----HHHHHHHHHHHHH-----HhcCHhHHHHHHHHHhhhcchh
Q psy9376 198 FFRAALCHLCIDVINAHNAIDRYKTIYPAFQ---DS----REYKLLRILIEHI-----EEQNVDGFTEAVKDYDSISRLD 265 (320)
Q Consensus 198 ~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~---~s----~e~~~l~~l~~a~-----~~~d~~~~~~Ai~~ye~~~~ld 265 (320)
+...+.+. ...++.++|+..|+++....| .. ........++... ..-+.+++++|+..|+++.+++
T Consensus 381 ~~~l~~~~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 381 PTFFAEIL--TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH--HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 22223333 344556666666655432222 21 1111112222110 0011299999999999999977
Q ss_pred hhHHHHHHHHHHh
Q psy9376 266 QWYTTVLLRIKKQ 278 (320)
Q Consensus 266 ~~~~~~l~~i~~~ 278 (320)
|....++..+...
T Consensus 459 p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 459 PRSEQAKIGLAQL 471 (537)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7666665544433
No 67
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.9e-13 Score=129.29 Aligned_cols=222 Identities=13% Similarity=0.003 Sum_probs=152.7
Q ss_pred CCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHH
Q psy9376 27 GNKIDEAIECYTRA-------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAA 92 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA 92 (320)
.|++++|+..|.++ |.++...|++++|+..|++++.+.+ ....++..+|.++... ++++|
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS------NNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT------TCTHHHHHHHHHHHHTTCTTHH
T ss_pred CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc------CCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666554 4455556666666666666655422 1234566777777776 78888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 93 IDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
+.++++++.+.+.... ++..+|.+|... |++++|+.+|++++...+.. ..++..+|.++...|++++
T Consensus 324 ~~~~~~~~~~~~~~~~------~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 324 GKDFDKAKELDPENIF------PYIQLACLAYRE-NKFDDCETLFSEAKRKFPEA------PEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHHHHHTCSSCSH------HHHHHHHHTTTT-TCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhChhhHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHHcccC------HHHHHHHHHHHHHCCCHHH
Confidence 8888888877665433 788899998887 99999999999999887664 3578889999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhh---hHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCH
Q psy9376 173 AIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCID---VINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNV 248 (320)
Q Consensus 173 Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d---~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~ 248 (320)
|+..|+++....++.+...... ..++..+.+. .. .++.++|+..++++....|........ ..++. ..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-----~~ 462 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGI-APLVGKATLL--TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL-----QQ 462 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCS-HHHHHHHHHH--HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HT
T ss_pred HHHHHHHHHHhhhccchHHHHH-HHHHHHHHHH--hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-----Hh
Confidence 9999999988766543211001 1223333333 34 677888888887765555655544332 33331 46
Q ss_pred hHHHHHHHHHhhhcchhhhHHHHHHHH
Q psy9376 249 DGFTEAVKDYDSISRLDQWYTTVLLRI 275 (320)
Q Consensus 249 ~~~~~Ai~~ye~~~~ld~~~~~~l~~i 275 (320)
+++++|+..|+++.+++|....++..+
T Consensus 463 g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 463 EDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 899999999999999888887776533
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=1.8e-12 Score=112.91 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc---
Q psy9376 27 GNKIDEAIECYTRA-----------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK--- 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~--- 86 (320)
.|++++|++.|.++ |.++...|++++|+..|++++++++... ....++..+|.++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~lg~~~~~~~~ 104 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---RVPQAEYERAMCYYKLSP 104 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHCC
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc---hhHHHHHHHHHHHHHhcc
Confidence 57888888887765 7788999999999999999999865332 356788999999987
Q ss_pred -----C-CHHHHHHHHHHHHHHHHHcCChHHHH-----------HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 87 -----T-DNEAAIDCLSKAIVIYTDMGRFTMAA-----------KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 87 -----~-~~~eA~~~~~kA~~l~~~~~~~~~aa-----------~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
. ++++|+..|++++..+|++.....+- ..+..+|.+|... |++++|+..|++++..+|...
T Consensus 105 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~- 182 (261)
T 3qky_A 105 PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR-ELYEAAAVTYEAVFDAYPDTP- 182 (261)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTST-
T ss_pred cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCc-
Confidence 6 89999999999999998876543321 2238999999997 999999999999999988743
Q ss_pred chHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhhhhhhh
Q psy9376 150 NSSANKCLLKVAHHAALL----------QNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 150 ~~~a~~~~~~la~~~~~~----------g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
....++..+|.+|..+ |++++|+.+|+++....|+++.
T Consensus 183 --~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 183 --WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp --THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred --hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 2467899999999977 9999999999999998887654
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=4.4e-11 Score=109.17 Aligned_cols=227 Identities=8% Similarity=-0.113 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHH
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMA 112 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~a 112 (320)
.+.....|.++...|++++|...+++++...+ .+++...+.++..+|.++... ++++|..++++++.+.+..++....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 44555567888889999999999999998763 334445667888888888876 9999999999999999999999889
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN--SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~--~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
+.++.++|.++... |++++|+.+|++++.+.+..+.. .....++..+|.++...|++++|..+++++....+.....
T Consensus 93 ~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 93 LWSLIQQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 99999999999997 99999999999999999876654 4567788999999999999999999999998765432111
Q ss_pred hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhC---CCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 191 KYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIY---PAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 191 ~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~---~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
... ..+...+. ++...++.++|...+.+.. +.............+..+......+++++|...++++...+|
T Consensus 172 -~~~-~~~~~la~--~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 172 -QQL-QCLAMLIQ--CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp -GGH-HHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred -HHH-HHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 011 11222222 2334455566666555432 222111111111111111001136789999999999887544
No 70
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.51 E-value=1.6e-14 Score=116.00 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=110.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
.|.+++..|++++|+..+++++... +.....+..+|.+|... ++++|+++|++++++.|++.. ++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~------a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK------AHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHH
Confidence 4677778889999999999988764 34566778889999988 999999999999999887644 8999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhhhhhhh
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIY-EEVGRTSLDSSL 189 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y-~~~~~~~~~~~~ 189 (320)
+|.+|... |++++|+.+|++++++.|.. ..++.++|.++...|++++|++.| +++....|+++.
T Consensus 71 lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 71 LGLLYELE-ENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHc-CchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 99999997 99999999999999998874 578999999999999999988775 889988887664
No 71
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.50 E-value=5.7e-12 Score=99.68 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=109.1
Q ss_pred cCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 67 SGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 67 ~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
.+++...+.++..+|.++... ++++|+.++++++.+.+..++....+.++..+|.+|... |++++|+.+|++++.+.+
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTLLLAR 80 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 467788899999999999888 999999999999999999999999999999999999997 999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 146 GEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 146 ~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
..+++.....++..+|.++...|++++|+++++++.....
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9888888899999999999999999999999999987643
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=4.6e-13 Score=114.03 Aligned_cols=133 Identities=16% Similarity=0.115 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHH
Q psy9376 27 GNKIDEAIECYTRA---------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~ 90 (320)
.|++++|++.|.++ |.++...|++++|+.+|++++++. | ....++..+|.+|... +++
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-----Y-NLANAYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----C-SHHHHHHHHHHHHHHTTCHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----c-chHHHHHHHHHHHHHcccHH
Confidence 57888888888776 677888999999999999999874 2 3567899999999998 999
Q ss_pred HHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC
Q psy9376 91 AAIDCLSKAIVIYTDMGR-FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~-~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~ 169 (320)
+|+.++++++.+.|.+.. ....+.++.++|.++... |++++|+++|++++++.+.. ....++..+|.++...|+
T Consensus 94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDVTSKK----WKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSSCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhcCCCc----ccHHHHHHHHHHHHHHHH
Confidence 999999999999887653 244567899999999997 99999999999999985540 025788899999988777
Q ss_pred H
Q psy9376 170 Y 170 (320)
Q Consensus 170 y 170 (320)
.
T Consensus 169 ~ 169 (228)
T 4i17_A 169 D 169 (228)
T ss_dssp H
T ss_pred H
Confidence 6
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.49 E-value=2.7e-12 Score=108.39 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=125.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy9376 26 GGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 26 ~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~ 104 (320)
..|++++|+..|.++... +++.+.-.+... -............++|.+|... ++++|+.+|++++++.|
T Consensus 16 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIAL-----NIDRTEMYYWTN-----VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CHHHHHHHHHHH-----SCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCChHHHHHhh-----hcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 368999999999998554 223322222211 0112233445566789999888 99999999999999988
Q ss_pred HcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHH
Q psy9376 105 DMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN--YNKAIQIYEEVGR 182 (320)
Q Consensus 105 ~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~--y~~Ai~~y~~~~~ 182 (320)
++.. ++.++|.+|... |++++|+.+|++++++.|.. ..++..+|.+|...|+ ...+...|+++..
T Consensus 86 ~~~~------~~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 86 NNVD------CLEACAEMQVCR-GQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152 (208)
T ss_dssp TCHH------HHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred CCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence 7643 899999999997 99999999999999998875 5789999999987764 4566777777653
Q ss_pred hhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHH
Q psy9376 183 TSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRI 238 (320)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~ 238 (320)
..+.. ..+++.+++.+. .++.++|+..|+++...+|++.....+..
T Consensus 153 ~~~~~--------~a~~~~g~~~~~--~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 153 PTKMQ--------YARYRDGLSKLF--TTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp CCHHH--------HHHHHHHHHHHH--HHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred CCchh--------HHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 22211 012333444433 57788999999999999888654444433
No 74
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.49 E-value=1.6e-12 Score=101.22 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
...+++..+...|+.+...|+|++|+++|++|+++. | ..+.+|.++|.+|... ++++|++++++|+++.|+..
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----P-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 356677778889999999999999999999999984 2 2467899999999998 99999999999999999875
Q ss_pred -ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 108 -RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 108 -~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
.+...+.++.++|.+|... |++++|+++|++++...+.
T Consensus 77 ~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 77 ADYKLIAKAMSRAGNAFQKQ-NDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcC
Confidence 4677889999999999997 9999999999999998764
No 75
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=1.6e-12 Score=111.71 Aligned_cols=181 Identities=14% Similarity=0.079 Sum_probs=140.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|++.|.++ |.++...|++++|...|++++++.+ .....+..+|.+|... ++++
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS------RNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHHhHHHH
Confidence 57888888888776 6788889999999999999998842 2356788889998888 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+.++++++. .+.....+.++..+|.+|... |++++|+.+|++++...+.. ..++..+|.++...|+++
T Consensus 124 A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 124 AYQRLLEASQ----DTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHh----CccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHH
Confidence 9999999987 223344566899999999997 99999999999999987653 568899999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH
Q psy9376 172 KAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREY 233 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~ 233 (320)
+|+.+|+++....+..... +.. +..++...++.++|...++++...+|.+.+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARS-------LLL--GIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHH-------HHH--HHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHHhCcCcHHH-------HHH--HHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999998765543321 221 2222334566667777666665556665544
No 76
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7.9e-13 Score=125.08 Aligned_cols=216 Identities=14% Similarity=0.097 Sum_probs=162.5
Q ss_pred CCCHHHHHHHHHHHHH----------------------------HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAAN----------------------------MFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLL 78 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~----------------------------~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~ 78 (320)
.|++++|+..|.++.. ++...|++++|+..|+++++.. +. ...+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----~~--~~~~~ 274 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-----PR--VNSYI 274 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CC--HHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cc--HHHHH
Confidence 5788888887766544 4667899999999999999874 32 77889
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHH
Q psy9376 79 DAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCL 157 (320)
Q Consensus 79 ~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~ 157 (320)
.+|.++... ++++|+.++++++.+.+.... ++..+|.+|... |++++|+.+|++++.+.+.. ..++
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~ 341 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSS------VYYHRGQMNFIL-QNYDQAGKDFDKAKELDPEN------IFPY 341 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH------HHHHHHHHHHHT-TCTTHHHHHHHHHHHTCSSC------SHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH------HHHHHHHHHHHh-CCHHHHHHHHHHHHHhChhh------HHHH
Confidence 999999988 999999999999988776544 799999999997 99999999999999987764 3588
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcH------
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSR------ 231 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~------ 231 (320)
..+|.++...|++++|+.+|+++....++.+.. +...+.+. ...++.++|+..+.++....|...
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~la~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 412 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEV-------PNFFAEIL--TDKNDFDKALKQYDLAIELENKLDGIYVGI 412 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHH-------HHHHHHHH--HHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHH-------HHHHHHHH--HHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence 999999999999999999999998876654321 22233333 344566666666665544333332
Q ss_pred -HHHHHHHHHHHHHhcC---HhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 232 -EYKLLRILIEHIEEQN---VDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 232 -e~~~l~~l~~a~~~~d---~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
-...+..++ .. .+++++|+..|+++..++|....++..+.
T Consensus 413 ~~~~~l~~~~-----~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 456 (514)
T 2gw1_A 413 APLVGKATLL-----TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456 (514)
T ss_dssp HHHHHHHHHH-----HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHH-----hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 222223322 25 79999999999999997776665554443
No 77
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=8.7e-13 Score=112.37 Aligned_cols=180 Identities=16% Similarity=0.131 Sum_probs=134.5
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|.++ |.++...|++++|+.+|++++++.+ .....+..+|.++... ++++
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS------SAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHhccHHH
Confidence 56777777777665 7888999999999999999998842 2356788889999887 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+.++++++.+.+... .++..+|.+|... |++++|+.+|++++...+.. ..++..+|.++...|+++
T Consensus 110 A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 110 AKDMFEKALRAGMENG------DLFYMLGTVLVKL-EQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHHHHHHTCCSH------HHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHhCCCCH------HHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHH
Confidence 9999999999876543 3799999999997 99999999999999987753 468899999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHH
Q psy9376 172 KAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYK 234 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~ 234 (320)
+|+..|+++....++... .+...+.+. ...++.++|+..++++....|++....
T Consensus 177 ~A~~~~~~~~~~~~~~~~-------~~~~la~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHAD-------AFYNAGVTY--AYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHHHHHHHHHCTTCHH-------HHHHHHHHH--HHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCcccHH-------HHHHHHHHH--HHccCHHHHHHHHHHHHccCcchHHHH
Confidence 999999999887655432 133333333 334555566666655544455544433
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4e-13 Score=127.99 Aligned_cols=190 Identities=12% Similarity=0.093 Sum_probs=148.3
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 39 RAANMFKMAKKW-NNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 39 ~ag~~~~~~g~~-~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
..|.++...|++ ++|+.+|++++++.+ ..+.++..+|.+|... ++++|+.+|++|+++.|. +.++
T Consensus 107 ~lg~~~~~~g~~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~ 173 (474)
T 4abn_A 107 LKGKALNVTPDYSPEAEVLLSKAVKLEP------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------KVSL 173 (474)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------HHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------HHHH
Confidence 347888889999 999999999999842 2457899999999988 999999999999988643 3689
Q ss_pred HHHHHHHHhcc---------CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc--------cCHHHHHHHHHH
Q psy9376 117 QTIAEIYETDC---------VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL--------QNYNKAIQIYEE 179 (320)
Q Consensus 117 ~~la~~y~~~l---------~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~--------g~y~~Ai~~y~~ 179 (320)
.++|.+|.. + |++++|+.+|++|+++.+.. ..++..+|.++... |++++|+..|++
T Consensus 174 ~~lg~~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 174 QNLSMVLRQ-LQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246 (474)
T ss_dssp HHHHHHHTT-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 999999988 7 89999999999999998774 56899999999999 999999999999
Q ss_pred HHHhhh---hhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHH
Q psy9376 180 VGRTSL---DSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAV 255 (320)
Q Consensus 180 ~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai 255 (320)
+....+ +.+. .+++.+.++. ..++.++|++.|+++....|...+.... ..++. ..+++++|+
T Consensus 247 al~~~p~~~~~~~-------~~~~lg~~~~--~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~-----~lg~~~eAi 312 (474)
T 4abn_A 247 AEKVDRKASSNPD-------LHLNRATLHK--YEESYGEALEGFSQAAALDPAWPEPQQREQQLLE-----FLSRLTSLL 312 (474)
T ss_dssp HHHHCGGGGGCHH-------HHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHhCCCcccCHH-------HHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHHHHH
Confidence 998766 3332 2344444443 4566667777776655555555544332 33332 368999999
Q ss_pred HHHhhhc
Q psy9376 256 KDYDSIS 262 (320)
Q Consensus 256 ~~ye~~~ 262 (320)
..|.++.
T Consensus 313 ~~~~~~~ 319 (474)
T 4abn_A 313 ESKGKTK 319 (474)
T ss_dssp HHTTTCC
T ss_pred HHhcccc
Confidence 9999884
No 79
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.47 E-value=7.2e-13 Score=103.18 Aligned_cols=111 Identities=19% Similarity=0.105 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC-
Q psy9376 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE- 148 (320)
Q Consensus 71 ~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~- 148 (320)
.+.+.++.++|+++... ++++|+++|++|+++.|.+. .++.++|.+|... |++++|++.|++++++.+...
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~------~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI------TFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCcccch
Confidence 46788999999998888 99999999999999987653 4899999999997 999999999999999988764
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 149 SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 149 ~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
.+...+.++.++|.++..+|++++|++.|+++....++..
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 4556678999999999999999999999999987665533
No 80
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=3.2e-12 Score=106.02 Aligned_cols=137 Identities=18% Similarity=0.228 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHh
Q psy9376 27 GNKIDEAIECYTRA--------------------ANMFKMAKKWNNAGKAFVEAANLHMKSG-TKHDAACNLLDAANCFK 85 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~-~~~~aa~~~~~aa~~y~ 85 (320)
.|++++|...|.++ |.++...|++++|..+|++++.+.+..+ ++...+.++.++|.++.
T Consensus 39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 57888888888776 5677889999999999999999999998 55578899999999998
Q ss_pred cC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 86 KT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 86 ~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
.. ++++|+.++++++.+.+..+++...+.++..+|.++... |++++|+.++++++++.+..+++...+.++..++.+.
T Consensus 119 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-KNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE 197 (203)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchh
Confidence 87 999999999999999999999999999999999999997 9999999999999999999998888888887777654
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=7.1e-12 Score=105.10 Aligned_cols=181 Identities=12% Similarity=0.029 Sum_probs=135.7
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~ 90 (320)
.|++++|+..|.++ |.++...|++++|..+|++++.+.+ .....+..+|.++... +++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------DSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCCHH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhcCcHH
Confidence 67899999988876 6788889999999999999998742 2345678888887765 899
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|+.++++++. .+.......++..+|.++... |++++|+.+|++++...+.. ..++..+|.++...|++
T Consensus 95 ~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 95 ESMAYFDKALA----DPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCH
Confidence 99999999987 223334456899999999997 99999999999999987663 56889999999999999
Q ss_pred HHHHHHHHHHHHhhh-hhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH
Q psy9376 171 NKAIQIYEEVGRTSL-DSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREY 233 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~ 233 (320)
++|+.+|+++....+ ..+.. +...+.+ +...++.+.+...++.+...+|++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADD-------LLLGWKI--AKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHH-------HHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHH-------HHHHHHH--HHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999988766 44322 1111222 223344455555555444445555443
No 82
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=6.7e-12 Score=109.71 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----C-CHHHHHHHHHHHHHHHHHcCChH
Q psy9376 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK----T-DNEAAIDCLSKAIVIYTDMGRFT 110 (320)
Q Consensus 36 ~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~----~-~~~eA~~~~~kA~~l~~~~~~~~ 110 (320)
.+...|..+...|++++|+.+|+++++ .++ ..++.++|.+|.. . ++++|+.+|++|+++ ++
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~-- 73 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY-- 73 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC--
Confidence 445668999999999999999999998 222 3578889999998 6 999999999999876 22
Q ss_pred HHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Q psy9376 111 MAAKHHQTIAEIYET----DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL----LQNYNKAIQIYEEVGR 182 (320)
Q Consensus 111 ~aa~~~~~la~~y~~----~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~----~g~y~~Ai~~y~~~~~ 182 (320)
+.++..+|.+|.. . +++++|+.+|++|++.- ...++..+|.+|.. .|++++|+++|+++..
T Consensus 74 --~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 74 --SNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLK--------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp --HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC--------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 4589999999998 8 99999999999999862 25689999999999 9999999999999987
Q ss_pred hhhhhhhhhcchhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhh
Q psy9376 183 TSLDSSLLKYSAKEYFFRAALCHLCI--DVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDS 260 (320)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~ 260 (320)
..... .+++.+.++... ..++.++|+..|+++... ....-+..+..++. -..+..+++++|+..|++
T Consensus 143 ~~~~~---------a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 143 LNDGD---------GCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYH-HGEGATKNFKEALARYSK 211 (273)
T ss_dssp TTCHH---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH-HTCSSCCCHHHHHHHHHH
T ss_pred cCcHH---------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-cCCCCCccHHHHHHHHHH
Confidence 54211 122334333321 156777888888765433 12222222333332 111226899999999999
Q ss_pred hcchhhhHHHHHHHHHH
Q psy9376 261 ISRLDQWYTTVLLRIKK 277 (320)
Q Consensus 261 ~~~ld~~~~~~l~~i~~ 277 (320)
+.+++| ...+..+..
T Consensus 212 a~~~~~--~~a~~~l~~ 226 (273)
T 1ouv_A 212 ACELEN--GGGCFNLGA 226 (273)
T ss_dssp HHHTTC--HHHHHHHHH
T ss_pred HHhCCC--HHHHHHHHH
Confidence 998877 334433433
No 83
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=2.4e-12 Score=122.56 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcC-CH-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCC
Q psy9376 53 AGKAFVEAANLHMK-SGTKHDAACNLLDAANCFKKT-DN-EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD 129 (320)
Q Consensus 53 A~~~y~kA~~~~~~-~~~~~~aa~~~~~aa~~y~~~-~~-~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~ 129 (320)
....+.+++..... .......+..+...|.++... ++ ++|+.+|++|+++.|.+. .++..+|.+|... |+
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~-g~ 152 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV------EAWNQLGEVYWKK-GD 152 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc-CC
Confidence 33444444444432 222334678899999999988 99 999999999999987653 3899999999997 99
Q ss_pred HHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHH
Q psy9376 130 QEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL---------QNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFR 200 (320)
Q Consensus 130 ~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~---------g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~ 200 (320)
+++|+.+|++++++.+. ..++..+|.++..+ |++++|++.|+++....+++... ++.
T Consensus 153 ~~~A~~~~~~al~~~p~-------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~ 218 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN-------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS-------WYI 218 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HHH
T ss_pred HHHHHHHHHHHHhhCCC-------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH-------HHH
Confidence 99999999999998654 37899999999999 99999999999999887765432 333
Q ss_pred HHHHHHhh------hhHHHHHHHHHHHHhCCCcc---CcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHH
Q psy9376 201 AALCHLCI------DVINAHNAIDRYKTIYPAFQ---DSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTT 270 (320)
Q Consensus 201 a~~~~l~~------d~~~~~~A~~~y~~~~~~f~---~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~ 270 (320)
.+.+++.. +.++.++|++.|+++....| ........ ..++ ...+++++|+..|+++.+++|....
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH-----KYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 34333221 23888888888887765555 44444332 3332 1468999999999999998777665
Q ss_pred HHHHH
Q psy9376 271 VLLRI 275 (320)
Q Consensus 271 ~l~~i 275 (320)
.+..+
T Consensus 294 a~~~l 298 (474)
T 4abn_A 294 PQQRE 298 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 84
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.45 E-value=5.4e-13 Score=118.55 Aligned_cols=222 Identities=13% Similarity=0.015 Sum_probs=155.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~ 106 (320)
.++..-.+.+...|..+...|++++|+..|+++++..+ ....++..+|.++... ++++|+.++++++.+.|..
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 88 (327)
T 3cv0_A 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88 (327)
T ss_dssp SCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Confidence 33333334444557888889999999999999998742 2456788889998888 9999999999999986654
Q ss_pred CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHH-------HHHHHH-HH-HHHHccCHHHHHHHH
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSAN-------KCLLKV-AH-HAALLQNYNKAIQIY 177 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~-------~~~~~l-a~-~~~~~g~y~~Ai~~y 177 (320)
+.++..+|.+|... |++++|+.+|++++...+......... .....+ +. ++...|++++|+.+|
T Consensus 89 ------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 89 ------IAVHAALAVSHTNE-HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp ------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 34799999999997 999999999999999877654321110 001122 44 578889999999999
Q ss_pred HHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHH
Q psy9376 178 EEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVK 256 (320)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~ 256 (320)
+++....+..... +...+.+ +...++.++|+..+.++....|........ ..++ . ..+++++|+.
T Consensus 162 ~~~~~~~~~~~~~-------~~~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~---~~~~~~~A~~ 227 (327)
T 3cv0_A 162 HAALEMNPNDAQL-------HASLGVL--YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL--A---NGNRPQEALD 227 (327)
T ss_dssp HHHHHHSTTCHHH-------HHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--H---HTTCHHHHHH
T ss_pred HHHHhhCCCCHHH-------HHHHHHH--HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--H---HcCCHHHHHH
Confidence 9999876654321 2222332 334566777777777665555655544332 3332 1 3689999999
Q ss_pred HHhhhcchhhhHHHHHHHHH
Q psy9376 257 DYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 257 ~ye~~~~ld~~~~~~l~~i~ 276 (320)
.|+++.+++|....++..+.
T Consensus 228 ~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 228 AYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 99999998887766665444
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.43 E-value=4.7e-12 Score=108.09 Aligned_cols=154 Identities=15% Similarity=0.062 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc---
Q psy9376 27 GNKIDEAIECYTRA-----------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK--- 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~--- 86 (320)
.|++++|+..|+++ |.++...|++++|+..|+++++.++... ....++..+|.++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~---~~~~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---NIDYVMYMRGLTNMALDD 93 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---cHHHHHHHHHHHHHhhhh
Confidence 46888888777765 6678889999999999999999876432 244567777777653
Q ss_pred ---------------C-CHHHHHHHHHHHHHHHHHcCChHHH-----------HHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy9376 87 ---------------T-DNEAAIDCLSKAIVIYTDMGRFTMA-----------AKHHQTIAEIYETDCVDQEKAVEHYEQ 139 (320)
Q Consensus 87 ---------------~-~~~eA~~~~~kA~~l~~~~~~~~~a-----------a~~~~~la~~y~~~l~~~~~Ai~~y~k 139 (320)
. ++++|+..|+++++.+|+......+ +.....+|.+|... |++++|+..|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~ 172 (225)
T 2yhc_A 94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER-GAWVAVVNRVEG 172 (225)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 3 7899999999999999887764332 22336789999997 999999999999
Q ss_pred HHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 140 AATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 140 A~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
+++.+|.. ....+++..+|.++..+|++++|++.++++....+++
T Consensus 173 ~l~~~p~~---~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 173 MLRDYPDT---QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHSTTS---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHCcCC---CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 99999874 2355789999999999999999999999888765543
No 86
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.42 E-value=7.3e-12 Score=105.02 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~ 108 (320)
..+++.+|.. |..+...|++++|+..|++++ ++ .+.++.++|.+|... ++++|+.+|++++.+.+..
T Consensus 3 ~~~~~~~~~~-g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 70 (213)
T 1hh8_A 3 LVEAISLWNE-GVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-- 70 (213)
T ss_dssp HHHHHHHHHH-HHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred hHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--
Confidence 3456666654 788888999999999999984 11 346899999999888 9999999999999987654
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC----------CchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE----------SNSSANKCLLKVAHHAALLQNYNKAIQIYE 178 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~----------~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~ 178 (320)
+.++.++|.+|... |++++|+.+|++++.+.+... .......++..+|.++...|++++|++.|+
T Consensus 71 ----~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 71 ----AVAYFQRGMLYYQT-EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp ----HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34899999999997 999999999999999888765 444556899999999999999999999999
Q ss_pred HHHHhhhhh
Q psy9376 179 EVGRTSLDS 187 (320)
Q Consensus 179 ~~~~~~~~~ 187 (320)
++....++.
T Consensus 146 ~al~~~p~~ 154 (213)
T 1hh8_A 146 LATSMKSEP 154 (213)
T ss_dssp HHHTTCCSG
T ss_pred HHHHcCccc
Confidence 999876653
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.42 E-value=1.1e-11 Score=105.69 Aligned_cols=178 Identities=12% Similarity=-0.005 Sum_probs=127.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
..|..+...|++++|+..|++++..++. ......++..+|.+|... ++++|+..|++++..+|++.. +..++.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~ 82 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMY 82 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHH
Confidence 3467788899999999999999987542 223457888899999988 999999999999999987654 334577
Q ss_pred HHHHHHHh------------------ccCCHHHHHHHHHHHHhHhhccCCchHHH-----------HHHHHHHHHHHHcc
Q psy9376 118 TIAEIYET------------------DCVDQEKAVEHYEQAATYFKGEESNSSAN-----------KCLLKVAHHAALLQ 168 (320)
Q Consensus 118 ~la~~y~~------------------~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~-----------~~~~~la~~~~~~g 168 (320)
.+|.+|.. . |++++|+..|+++++.+|.......+. .....+|.+|...|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDP-QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CC-HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCc-HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77777654 4 789999999999999998865432211 22256788999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccC
Q psy9376 169 NYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQD 229 (320)
Q Consensus 169 ~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~ 229 (320)
++++|+..|+++....|+++.. ...++..+.++ ...++.++|++.++.+....|.
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~----~~a~~~l~~~~--~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQAT----RDALPLMENAY--RQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHH----HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHCCSC
T ss_pred cHHHHHHHHHHHHHHCcCCCcc----HHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhCCC
Confidence 9999999999999887765421 11222223332 2345555555555544334333
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.41 E-value=7.5e-13 Score=106.11 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
+|++++|++.+.++ |.+|...|+|++|+++|++++++.+ ..+.+|..+|.+|... ++++
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE------RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCchHH
Confidence 56777777777666 8899999999999999999999942 3467899999999998 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHH-HHHHhHhhccCCchHHHHHHHHHHHHHHHccC
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHY-EQAATYFKGEESNSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y-~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~ 169 (320)
|+.+|++++++.|.+.. ++.++|.+|... |++++|+..| ++|+++.|.. ..++...+.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~------~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~------~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKD------LVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGS------PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHH------HHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTC------HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCc
Confidence 99999999999886644 899999999997 9999888765 8999998875 4577778888877775
No 89
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=9.3e-12 Score=110.93 Aligned_cols=199 Identities=11% Similarity=0.048 Sum_probs=148.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH--HHHcCChHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVI--YTDMGRFTMAAKHHQ 117 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l--~~~~~~~~~aa~~~~ 117 (320)
+..|-..|+++.|+..+... ++. ...++..++..+... +.++|++.+++.+.. .|++ +.++.
T Consensus 41 ~r~yi~~g~~~~al~~~~~~--------~~~-~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~------~~~~~ 105 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPS--------SAP-ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN------TTFLL 105 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTT--------SCH-HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC------HHHHH
T ss_pred HHHHHHCCCHHHHHHHhccc--------CCh-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC------HHHHH
Confidence 57788899999999866541 333 456777888888887 899999999988753 2322 34799
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHh
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEY 197 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~ 197 (320)
.+|.+|... |++++|+.+|++ +. ...++..+|.++..+|++++|++.|+++....++.....
T Consensus 106 ~la~~~~~~-g~~~~Al~~l~~-----~~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~------ 167 (291)
T 3mkr_A 106 MAASIYFYD-QNPDAALRTLHQ-----GD------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ------ 167 (291)
T ss_dssp HHHHHHHHT-TCHHHHHHHHTT-----CC------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------
T ss_pred HHHHHHHHC-CCHHHHHHHHhC-----CC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH------
Confidence 999999998 999999999987 21 256889999999999999999999999988766543211
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHH
Q psy9376 198 FFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKK 277 (320)
Q Consensus 198 ~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~ 277 (320)
+..+.+.+..+.++.++|+..|+++...+|.+...... +..++ ...+++++|+..|+++++++|....++.....
T Consensus 168 -l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~--la~~~--~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~ 242 (291)
T 3mkr_A 168 -LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG--QAACH--MAQGRWEAAEGVLQEALDKDSGHPETLINLVV 242 (291)
T ss_dssp -HHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH--HHHHH--HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH--HHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11122333345688899999998887778876654332 22112 24789999999999999999999988866553
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=4.2e-12 Score=102.92 Aligned_cols=139 Identities=12% Similarity=0.037 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR 108 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~ 108 (320)
.+.....+...|..+...|++++|+..|++++...+ .....+..+|.++... ++++|+.++++++.+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 75 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-- 75 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Confidence 344566677778888888999999998888876532 1256677788888777 8899999999988875543
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
..++..+|.++... |++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|+++....++.
T Consensus 76 ----~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 76 ----VKVATVLGLTYVQV-QKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp ----HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 24788888888887 89999999999988886653 4677888889999999999999999888765543
No 91
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.3e-11 Score=113.10 Aligned_cols=214 Identities=7% Similarity=0.052 Sum_probs=150.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChH
Q psy9376 43 MFKMAKKWNNAGKAFVEAANLHMKSGTK-----------HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFT 110 (320)
Q Consensus 43 ~~~~~g~~~~A~~~y~kA~~~~~~~~~~-----------~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~ 110 (320)
.+...|+|++|++.|.++++..+..++. .....++.++|.+|... ++++|++++.+++.+.+..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3445689999999999988876543321 23456788999999987 99999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
..+.+...+|.++... |++++|+.++++++.+.+..++......++.++|.++...|+|++|+.+++++..........
T Consensus 93 ~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVP-DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHCSCC-SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 8888899999999987 999999999999999999998888889999999999999999999999999987653221111
Q ss_pred hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHH---hCCCccCcHHH--HHHHHHHHHHHhcCHhHHHHHHHHHhhhc
Q psy9376 191 KYSAKEYFFRAALCHLCIDVINAHNAIDRYKT---IYPAFQDSREY--KLLRILIEHIEEQNVDGFTEAVKDYDSIS 262 (320)
Q Consensus 191 ~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~---~~~~f~~s~e~--~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~ 262 (320)
.. ....+...+.+ +...++..+|...|.+ ..+..+..... .+...+. .-....++|.+|...|.++.
T Consensus 172 ~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PS-LVDVHLLESKV--YHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG--ILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TH-HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--HHTTSSSCHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHH--HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHH
Confidence 01 11222222333 3334444445444443 33333333222 1111111 11234577777777776654
No 92
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.39 E-value=3.6e-12 Score=99.15 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc
Q psy9376 72 DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN 150 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~ 150 (320)
..+..+.+.|++|.+. ++++|+++|++|+++.|.+. .++.++|.+|... |++++|+..|++++++.+..
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~--- 80 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA------ILYSNRAACLTKL-MEFQRALDDCDTCIRLDSKF--- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhhh---
Confidence 4677888888888877 89999999999998877653 3789999999996 99999999999999887664
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 151 ~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
..++..+|.++..+|++++|++.|+++....|+++.
T Consensus 81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 568889999999999999999999999888776553
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.39 E-value=3.6e-12 Score=99.14 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
+++.| +.+..-|+.|...|+|++|+++|++++++. | ..+.+|.++|.+|... ++++|+.++++|+++.|.+.
T Consensus 9 nP~~a-~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 9 NPELA-QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-----P-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp CHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 44444 445566999999999999999999999984 2 2467899999999998 99999999999999977654
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHH
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHH 163 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~ 163 (320)
. ++.++|.+|... |++++|+++|++++++.|.. .+++..++.+
T Consensus 82 ~------a~~~lg~~~~~~-~~~~~A~~~~~~al~l~P~~------~~a~~~l~~~ 124 (126)
T 4gco_A 82 K------GYIRKAACLVAM-REWSKAQRAYEDALQVDPSN------EEAREGVRNC 124 (126)
T ss_dssp H------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred H------HHHHHHHHHHHC-CCHHHHHHHHHHHHHHCcCC------HHHHHHHHHh
Confidence 3 899999999997 99999999999999998875 3466666654
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=6.6e-12 Score=101.75 Aligned_cols=143 Identities=8% Similarity=0.023 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHH
Q psy9376 27 GNKIDEAIECYTR--------------AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~--------------ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~e 91 (320)
.|++++|+..|.+ .|.++...|++++|..+|.++++..+ ....++..+|.++... ++++
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP------DNVKVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHH
T ss_pred hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHH
Confidence 4566666666654 37888999999999999999998832 2356788888888877 9999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
|+.++++++.+.+.. +.++..+|.++... |++++|+.+|++++...+.. ..++..+|.++...|+++
T Consensus 95 A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 95 AVPLLIKVAEANPIN------FNVRFRLGVALDNL-GRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCcHh------HHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHH
Confidence 999999999986654 34789999999997 99999999999999987653 568899999999999999
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy9376 172 KAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 172 ~Ai~~y~~~~~~~~~~~ 188 (320)
+|+.+|+++....++++
T Consensus 162 ~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 162 EALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCCch
Confidence 99999999988766654
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.39 E-value=3.9e-13 Score=108.30 Aligned_cols=106 Identities=18% Similarity=0.070 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 70 KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 70 ~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
.+....++..+|.++... ++++|+.+|++++.+.|.+.. +|.++|.+|... |++++|+.+|++|+.+.|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~------~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~P~~- 103 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD------YIMGLAAIYQIK-EQFQQAADLYAVAFALGKND- 103 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHSSSC-
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH-ccHHHHHHHHHHHHhhCCCC-
Confidence 445677888889988887 999999999999999887654 899999999997 99999999999999998875
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 149 SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 149 ~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++.++|.+|..+|++++|+..|+++....++.+
T Consensus 104 -----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 -----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred -----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 35889999999999999999999999998877654
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.35 E-value=6.5e-12 Score=124.92 Aligned_cols=177 Identities=12% Similarity=0.019 Sum_probs=138.7
Q ss_pred CCCCHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy9376 26 GGNKIDEAIECYTRA----------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANC 83 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a----------------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~ 83 (320)
..+++++|++.|+++ |.++...|++++|+..|++++++.. ....++.+.|.+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~ 476 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG------WRWRLVWYRAVA 476 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------CCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc------chHHHHHHHHHH
Confidence 467888888888776 4567788999999999999999853 235678889999
Q ss_pred HhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHH
Q psy9376 84 FKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAH 162 (320)
Q Consensus 84 y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~ 162 (320)
|... ++++|+.+|++|+++.|++.. ++.++|.+|... |++++ +.+|++|+++.+.. ..++.++|.
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~------~~a~~~lg~ 542 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELA------PKLALAATAELA-GNTDE-HKFYQTVWSTNDGV------ISAAFGLAR 542 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSH------HHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTC------HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHc-CChHH-HHHHHHHHHhCCch------HHHHHHHHH
Confidence 8887 999999999999999987755 799999999997 99999 99999999987774 568899999
Q ss_pred HHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh------hhHHHHHHHHHHHHhCCCccC
Q psy9376 163 HAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI------DVINAHNAIDRYKTIYPAFQD 229 (320)
Q Consensus 163 ~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------d~~~~~~A~~~y~~~~~~f~~ 229 (320)
++..+|++++|++.|+++....++.... +++.+.+.+.. +..+.++|+..+..+.+..+.
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~~~a-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHFTTA-------RLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTHHHH-------HHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHcCCHHHHHHHHHhhcccCcccHHH-------HHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9999999999999999998776654322 23333333221 146677777777766544333
No 97
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.32 E-value=1.8e-10 Score=102.60 Aligned_cols=179 Identities=12% Similarity=0.029 Sum_probs=111.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|.++...|++++|+.+|.+ ++ ...++..+|.+|... ++++|+..+++++.+.|+.- ....+..|.
T Consensus 108 a~~~~~~g~~~~Al~~l~~--------~~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~-- 173 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ--------GD---SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-LTQLATAWV-- 173 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT--------CC---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHhC--------CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHH--
Confidence 4566667777777777666 11 234667777888777 88888888888887754321 111112222
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHH
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
.++... |++++|+.+|+++++.+|.. ..++..+|.++..+|++++|+..|+++....|+++.. ++
T Consensus 174 -~l~~~~-~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~-------l~ 238 (291)
T 3mkr_A 174 -SLAAGG-EKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET-------LI 238 (291)
T ss_dssp -HHHHCT-THHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HH
T ss_pred -HHHhCc-hHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HH
Confidence 233344 78888999998888887653 5678888999999999999999999988877765542 33
Q ss_pred HHHHHHHhhh-h-HHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy9376 200 RAALCHLCID-V-INAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYD 259 (320)
Q Consensus 200 ~a~~~~l~~d-~-~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye 259 (320)
+.+.+....+ . ..+.+.++...++.|.++...+ +.. ..+.|++++..|.
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d------~~~-----~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE------YRA-----KENDFDRLVLQYA 289 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH------HHH-----HHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH------HHH-----HHHHHHHHHHHcC
Confidence 3343333321 1 1233444444555555544322 111 2467777777663
No 98
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.29 E-value=8.8e-12 Score=99.68 Aligned_cols=116 Identities=11% Similarity=0.008 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHH
Q psy9376 54 GKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEK 132 (320)
Q Consensus 54 ~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~ 132 (320)
...|++++.+ .+.....+.+.|.++... ++++|+.+|++++.+.|.+. .++..+|.+|... |++++
T Consensus 7 ~~~~~~al~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~-g~~~~ 73 (148)
T 2vgx_A 7 GGTIAMLNEI------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS------RFFLGLGACRQAM-GQYDL 73 (148)
T ss_dssp CCSHHHHTTC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHH
T ss_pred hhhHHHHHcC------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH------HHHHHHHHHHHHH-hhHHH
Confidence 3445555554 345677788888888887 99999999999999887654 3799999999997 99999
Q ss_pred HHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 133 AVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 133 Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
|+.+|++++.+.|.. ..++..+|.++..+|++++|+..|+++....++++
T Consensus 74 A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 74 AIHSYSYGAVMDIXE------PRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHhcCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 999999999998775 35889999999999999999999999998776654
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=8.5e-11 Score=89.73 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 36 ~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
.+...|..+...|++++|...|++++...+ .....+..+|.++... ++++|+.++++++.+.+.. ..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hH
Confidence 345567888889999999999999987732 1245677888888776 9999999999999876543 34
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
++..+|.++... |++++|+.++++++...+.. ..++..+|.++...|++++|+.+|+++....+
T Consensus 71 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 71 AWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 789999999997 99999999999999987653 46788999999999999999999999886544
No 100
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.27 E-value=9.7e-10 Score=104.52 Aligned_cols=204 Identities=14% Similarity=0.074 Sum_probs=145.0
Q ss_pred CCCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----
Q psy9376 27 GNKIDEAIECYTRA------------ANMFKM----AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK---- 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a------------g~~~~~----~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~---- 86 (320)
.+++++|+.+|.++ |.+|.. .+++++|+.+|+++++. + ...++..+|.+|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----G----LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCC
Confidence 68999999999887 667777 89999999999999864 2 34567788999987
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 87 T-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET----DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 87 ~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~----~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
. ++++|+.+|++|++. |+ +.++.++|.+|.. . +++++|+++|+++++. ++ ..++..+|
T Consensus 128 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~a~~~----~~----~~a~~~Lg 190 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVT-RDYVMAREWYSKAAEQ----GN----VWSCNQLG 190 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT----TC----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHH
Confidence 3 899999999999764 44 3578999999987 5 7999999999999875 22 56888999
Q ss_pred HHHHH----ccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCCCccCcHHHHH
Q psy9376 162 HHAAL----LQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI--DVINAHNAIDRYKTIYPAFQDSREYKL 235 (320)
Q Consensus 162 ~~~~~----~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~f~~s~e~~~ 235 (320)
.+|.. .+++++|++.|+++....... ..+..+.++..- ..++.++|+..|++.... ....-...
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~ 260 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSGDEL---------GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFR 260 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHH
Confidence 99998 899999999999988643211 122233333321 245677777777765443 11222222
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 236 LRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 236 l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
+..++. -..+..+++++|+..|+++.+.++
T Consensus 261 lg~~y~-~g~~~~~d~~~A~~~~~~a~~~~~ 290 (490)
T 2xm6_A 261 LGYILE-QGLAGAKEPLKALEWYRKSAEQGN 290 (490)
T ss_dssp HHHHHH-HTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHH-CCCCCCCCHHHHHHHHHHHHHcCC
Confidence 333321 111235678899999998876543
No 101
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.27 E-value=9.7e-11 Score=94.36 Aligned_cols=115 Identities=18% Similarity=0.119 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC------ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG------RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~------~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
.+..+.+.|+.+... ++++|+.+|++|+.+.|+.. ....-+.+|.++|.++... |++++|+.+|.+|+++|.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhh
Confidence 345556666666665 78888888888888877631 1112344899999999996 999999999999999932
Q ss_pred ccCC-chHHHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 146 GEES-NSSANKCL----LKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 146 ~~~~-~~~a~~~~----~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..+. .......| .+.|.++..+|++++|+..|+++....|+..
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 1110 01135677 9999999999999999999999998877654
No 102
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.26 E-value=6e-11 Score=95.58 Aligned_cols=117 Identities=12% Similarity=0.053 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKS------GTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIY 103 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~------~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~ 103 (320)
.+|-.+ ...|+.+...|+|++|+.+|.+|+++.+.. ......+.+|.+.|.++..+ ++++|+.+|++|++++
T Consensus 9 ~~a~~~-~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 9 VGAYLA-LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 344444 445888888999999999999999998752 11113456999999999998 9999999999999994
Q ss_pred HHcCC-hHHHHHHH----HHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 104 TDMGR-FTMAAKHH----QTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 104 ~~~~~-~~~aa~~~----~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
...+. ...-+.+| ++.|.++... |++++|+.+|++|+++.|+...
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~l-gr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCCS
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHC-CCHHHHHHHHHHHHhcCCCcHH
Confidence 33332 12334577 9999999996 9999999999999999988643
No 103
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.26 E-value=8.7e-11 Score=106.78 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGT---------KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVI 102 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~---------~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l 102 (320)
-...+...|..+...|++++|+.+|++++.+.+.... ....+.++.++|.+|... ++++|+.+|++|+.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666789999999999999999999999754321 112368899999999998 999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHH-HHHHHHHH
Q psy9376 103 YTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKA-IQIYEEVG 181 (320)
Q Consensus 103 ~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~A-i~~y~~~~ 181 (320)
.|.+. .++.++|.+|... |++++|+.+|++++++.+.. ..++..++.++..+|++++| ...|.++.
T Consensus 226 ~p~~~------~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNE------KGLSRRGEAHLAV-NDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcH------HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87653 4899999999997 99999999999999998764 46889999999999999999 55777765
Q ss_pred H
Q psy9376 182 R 182 (320)
Q Consensus 182 ~ 182 (320)
.
T Consensus 293 ~ 293 (336)
T 1p5q_A 293 E 293 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=2.9e-11 Score=117.29 Aligned_cols=133 Identities=11% Similarity=-0.016 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 36 ~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
.+...|.++...|++++|+..|++++++.+ ....++.++|.+|... ++++|+.++++++++.+++ +.
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 92 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHP------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PG 92 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HH
Confidence 344458889999999999999999998742 2467889999999988 9999999999999997765 34
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhhhhh
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL---QNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~---g~y~~Ai~~y~~~~~~~~~~ 187 (320)
++.++|.+|... |++++|+++|++++++.+.. ..++..+|.++..+ |++++|++.|+++....++.
T Consensus 93 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 93 IALWLGHALEDA-GQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 899999999997 99999999999999997764 46889999999999 99999999999998876553
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=3.4e-11 Score=119.74 Aligned_cols=204 Identities=13% Similarity=0.024 Sum_probs=151.8
Q ss_pred HHcCCHHHHHHHHHHHHHHH-H-HcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy9376 45 KMAKKWNNAGKAFVEAANLH-M-KSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAE 121 (320)
Q Consensus 45 ~~~g~~~~A~~~y~kA~~~~-~-~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~ 121 (320)
...|++++|++.|++++... . ........+.++...|.++... ++++|+..|++++++.+++. .++.++|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW------RLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH------HHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH------HHHHHHHH
Confidence 45799999999999998111 0 0001123456788889998887 99999999999999987664 38999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHH
Q psy9376 122 IYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRA 201 (320)
Q Consensus 122 ~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a 201 (320)
+|... |++++|+..|++|+++.+.. ..++.++|.++..+|++++ ++.|+++....++.... +++.
T Consensus 476 ~~~~~-g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a-------~~~l 540 (681)
T 2pzi_A 476 AELLT-GDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA-------AFGL 540 (681)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH-------HHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH-------HHHH
Confidence 99997 99999999999999998875 4688999999999999999 99999999887765432 3333
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHH---HhcCHhHHHHHHHHHhhhcchhhhHHHH
Q psy9376 202 ALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHI---EEQNVDGFTEAVKDYDSISRLDQWYTTV 271 (320)
Q Consensus 202 ~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~---~~~d~~~~~~Ai~~ye~~~~ld~~~~~~ 271 (320)
+.++ ...++.++|++.|+++....|...+.... ..++... ...+.+++.+|+..++.+...+|-...+
T Consensus 541 g~~~--~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 541 ARAR--SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHH--HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHH--HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 4433 35688889999999887777776555433 2221100 0122588999999999886655554433
No 106
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.26 E-value=1.3e-10 Score=92.76 Aligned_cols=136 Identities=18% Similarity=0.088 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
.+....+...|..+...|++++|+..|.+++.+.+ ....++..+|.++... ++++|+.++++++.+.+.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--- 80 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence 34455666678999999999999999999999843 2366788999999888 9999999999999987654
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+.++..+|.++... |++++|+.+|++++.+.+... ........+..+...|++++|++.+.+....
T Consensus 81 ---~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 81 ---IKGYYRRAASNMAL-GKFRAALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp ---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 34899999999997 999999999999999977642 1233355666688899999999999987654
No 107
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.25 E-value=4.5e-10 Score=116.38 Aligned_cols=223 Identities=15% Similarity=0.116 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
.|.+++|..+|++++......+-+-+++..|.+|.+...+... ...|.+.|.++... ++++|+.+|.+|
T Consensus 1062 lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 4678888888887653333333334444455555555554433 45788999999988 999999999887
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc-------------CCchHH--------HHHHHHHHHHH
Q psy9376 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE-------------ESNSSA--------NKCLLKVAHHA 164 (320)
Q Consensus 106 ~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~-------------~~~~~a--------~~~~~~la~~~ 164 (320)
+++ ..+.++|.++.+. |++++|+++|..|...-+.. ++.... ...+..+|+.+
T Consensus 1132 -dD~----say~eVa~~~~~l-GkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDP----SSYMEVVQAANTS-GNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CCh----HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 332 2688999999997 99999999998876443221 111111 12456789999
Q ss_pred HHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCcc---------CcHHHHH
Q psy9376 165 ALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQ---------DSREYKL 235 (320)
Q Consensus 165 ~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~---------~s~e~~~ 235 (320)
...|+|++|+.+|+++.. |.+++.|.+. .++.++|++.+.++.+.-. +..++++
T Consensus 1206 e~eg~YeeA~~~Y~kA~n---------------y~rLA~tLvk--Lge~q~AIEaarKA~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNVSN---------------FGRLASTLVH--LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HhcCCHHHHHHHHHhhhH---------------HHHHHHHHHH--hCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHH
Confidence 999999999999998742 3444444433 3556777777766533211 0111111
Q ss_pred --------------HHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCC
Q psy9376 236 --------------LRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSL 284 (320)
Q Consensus 236 --------------l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~ 284 (320)
+..++.-+ ...|.|++||..+++.+.+||-+.-++..+......-.|
T Consensus 1269 A~~cgl~Iiv~~deLeeli~yY--e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1269 AQMCGLHIVVHADELEELINYY--QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHhhhcCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 12222222 256899999999999999999888888666655554333
No 108
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.25 E-value=7.5e-10 Score=105.31 Aligned_cols=132 Identities=18% Similarity=0.229 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----
Q psy9376 27 GNKIDEAIECYTRA------------ANMFKM----AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK---- 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a------------g~~~~~----~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~---- 86 (320)
.+++++|+.+|.++ |.+|.. .+++++|+..|+++++. ++ ..++.++|.+|..
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGV 163 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Confidence 57899999999887 566776 78999999999998764 22 4567788888876
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 87 T-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET----DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 87 ~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~----~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
. ++++|+++|++|++. |+ +.++..+|.+|.. . +++++|+.+|+++++. ++ ..++..+|
T Consensus 164 ~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg 226 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ----GN----VWSCNQLGYMYSRGLGVE-RNDAISAQWYRKSATS----GD----ELGQLHLA 226 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT----TC----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCC-cCHHHHHHHHHHHHHC----CC----HHHHHHHH
Confidence 2 788888888888763 33 3467888888876 5 7888888888888763 11 34566777
Q ss_pred HHHHH----ccCHHHHHHHHHHHHHh
Q psy9376 162 HHAAL----LQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 162 ~~~~~----~g~y~~Ai~~y~~~~~~ 183 (320)
.+|.. .+++++|+..|+++...
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 77765 66777777777776643
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.24 E-value=5.7e-11 Score=95.52 Aligned_cols=105 Identities=13% Similarity=-0.052 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
+++.+ +.+...|..+...|++++|+.+|++++.+. | ..+.+|.++|.+|... ++++|+.+|++|+.+.|++.
T Consensus 32 ~p~~~-~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 32 PDDMM-DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----F-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp CHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred CHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 44444 444556788899999999999999999984 3 3466899999999998 99999999999999999876
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
. ++.++|.+|... |++++|+.+|++++.+.++.
T Consensus 105 ~------~~~~lg~~~~~l-g~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 105 T------PVFHTGQCQLRL-KAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp H------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCH
T ss_pred H------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCH
Confidence 5 899999999997 99999999999999998764
No 110
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.3e-10 Score=89.31 Aligned_cols=96 Identities=20% Similarity=0.102 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+...|..+...|++++|+.+|.+++++.+ ....++.++|.+|... ++++|+.++++++.+.|.+. .+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~ 74 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAP------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV------RA 74 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH------HH
Confidence 33345555556666666666666665531 1234555556665555 56666666666665554432 25
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
+..+|.+|... |++++|+.+|++++.+.+
T Consensus 75 ~~~lg~~~~~~-~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 75 YIRKATAQIAV-KEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCHHHHHHHHHHHHHhCc
Confidence 56666666664 666666666666666553
No 111
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.22 E-value=6.7e-10 Score=105.95 Aligned_cols=143 Identities=9% Similarity=-0.052 Sum_probs=125.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH-cC-ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-C-ChHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMK-SG-TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-G-RFTMAAKH 115 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~-~~-~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~-~~~~aa~~ 115 (320)
+..++.+|+|++|...|++++++..+ +| +....+..+.++|.+|... ++++|..+++++++++... | +-...|..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 35677899999999999999999875 44 4457899999999999998 9999999999999999764 4 34678899
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
+.+||.+|..+ |++++|+.+|++|+++.... .++....+....++.++..+|.|.+|...|.++....
T Consensus 396 l~nLa~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 396 VMRAGLTNWHA-GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 99999999999999998774 4566778899999999999999999999999986544
No 112
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.22 E-value=2.5e-10 Score=92.11 Aligned_cols=106 Identities=19% Similarity=0.124 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 70 KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 70 ~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
....+..+...|.++... ++++|+.+|++++.+.+.+. .++.++|.+|... |++++|+.+|++++.+.+..
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~- 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP------IYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKY- 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC-
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH------HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC-
Confidence 345677788888888877 89999999999998877653 4799999999997 99999999999999987764
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 149 SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 149 ~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++..+|.++..+|++++|+.+|+++....+++.
T Consensus 79 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 79 -----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 56888999999999999999999999988776654
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.21 E-value=6.3e-10 Score=88.77 Aligned_cols=104 Identities=23% Similarity=0.127 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc
Q psy9376 72 DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN 150 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~ 150 (320)
..+..+...|.++... ++++|+.+|++++.+.+.. +.++..+|.++... |++++|+.+|++++.+.+..
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~--- 80 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKY--- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc---
Confidence 4677888889998887 9999999999999987655 34899999999997 99999999999999997763
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 151 ~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++..+|.++...|++++|+.+|+++....++..
T Consensus 81 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 81 ---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 56899999999999999999999999998766543
No 114
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=3.2e-10 Score=101.27 Aligned_cols=186 Identities=11% Similarity=0.023 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccC
Q psy9376 51 NNAGKAFVEAAN-LHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCV 128 (320)
Q Consensus 51 ~~A~~~y~kA~~-~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~ 128 (320)
++|...|++|++ +. | .....|...|.++... ++++|...|++++++.|.... .+|.++|.++... |
T Consensus 81 ~~A~~~~~rAl~~~~-----p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~-~ 148 (308)
T 2ond_A 81 DEAANIYERAISTLL-----K-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-----LVYIQYMKFARRA-E 148 (308)
T ss_dssp HHHHHHHHHHHTTTT-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-----HHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc-----HHHHHHHHHHHHh-c
Confidence 899999999998 53 2 2456788888888777 899999999999987654321 2789999998887 9
Q ss_pred CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHh
Q psy9376 129 DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA-LLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLC 207 (320)
Q Consensus 129 ~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~-~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 207 (320)
++++|+..|++|+...+.. ..++...+.+.. ..|++++|+.+|+++....|+.+. .|...+.. .
T Consensus 149 ~~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~--~ 213 (308)
T 2ond_A 149 GIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE-------YVLAYIDY--L 213 (308)
T ss_dssp CHHHHHHHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH-------HHHHHHHH--H
T ss_pred CHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHH--H
Confidence 9999999999999876643 234555554433 369999999999999887765432 12222222 2
Q ss_pred hhhHHHHHHHHHHHHhCCC--ccC--cHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 208 IDVINAHNAIDRYKTIYPA--FQD--SREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 208 ~d~~~~~~A~~~y~~~~~~--f~~--s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
...++.++|...|+.+... ++. +.... ..++. +. ...|++++|...++++.++.|-
T Consensus 214 ~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~--~~~~~-~~-~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIW--ARFLA-FE-SNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH--HHHHH-HH-HHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHHHHHhccCCCHHHHHHHH--HHHHH-HH-HHcCCHHHHHHHHHHHHHHccc
Confidence 3445666666666665443 232 22222 22221 11 1357888999999998887764
No 115
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.19 E-value=1.5e-10 Score=93.15 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGT------------KHDAACNLLDAANCFKKT-DNEAAIDCLSK 98 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~------------~~~aa~~~~~aa~~y~~~-~~~eA~~~~~k 98 (320)
+.+..+...|+.+...|+|++|+.+|.+++.+...... ....+.+|.++|.+|... ++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34555666788888899999999999999988643211 122334555555555554 55555555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 99 AIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 99 A~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
|+.+.|.+. .++..+|.+|... |++++|+..|++++.+.|.
T Consensus 89 al~~~p~~~------~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 89 VLKREETNE------KALFRRAKARIAA-WKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHSTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGG
T ss_pred HHhcCCcch------HHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCC
Confidence 555544332 2455555555554 5555555555555555444
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.2e-10 Score=88.04 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
.+..+.+.|..+... ++++|+.+|++++.+.|.+. .++.++|.+|... |++++|+.+|++++.+.+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~---- 71 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNF---- 71 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCc----
Confidence 466788888888877 99999999999999987653 4899999999997 99999999999999997764
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
..++..+|.++..+|++++|+..|+++....
T Consensus 72 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 --VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999877
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=9.4e-10 Score=93.04 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=104.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT----DNEAAIDCLSKAIVIYTDMGRFTMA 112 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~----~~~eA~~~~~kA~~l~~~~~~~~~a 112 (320)
+...|.+|...+++++|+.+|+++++. + .+.++.++|.+|... ++++|+.+|++|++ .|+
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----g----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~----~g~---- 84 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ----G----DGDALALLAQLKIRNPQQADYPQARQLAEKAVE----AGS---- 84 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT----T----CHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH----TTC----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----CCC----
Confidence 344588888899999999999999864 3 346788999999887 89999999999954 344
Q ss_pred HHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHh
Q psy9376 113 AKHHQTIAEIYET----DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL----LQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 113 a~~~~~la~~y~~----~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~----~g~y~~Ai~~y~~~~~~ 183 (320)
+.++.++|.+|.. . +++++|+.+|++|++.-+. .....++.++|.+|.. .+++++|+..|+++...
T Consensus 85 ~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSES----DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTS----HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCC----cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 3479999999987 6 8999999999999986432 1236789999999999 88999999999999875
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.18 E-value=3.4e-11 Score=109.47 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=109.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh---------HHHHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF---------TMAAKHH 116 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~---------~~aa~~~ 116 (320)
++++++|++.|.++.+.. ...+..+.+.|.++... ++++|+.+|++|+.+.+..... ...+.++
T Consensus 126 L~~~~~A~~~~~~a~~~~------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEECCCCGGGCCHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 456777888888877763 35678899999998887 9999999999999999877421 2225789
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
.++|.+|... |++++|+.+|++++++.+.. ..++.++|.++..+|++++|+..|+++....|++.
T Consensus 200 ~nla~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 200 LNLAMCHLKL-QAFSAAIESCNKALELDSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 9999999997 99999999999999998764 57899999999999999999999999998877654
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.18 E-value=2.9e-10 Score=100.58 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA 153 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a 153 (320)
..+...|.++... ++++|+.+|++|+.+.+.+. .++.++|.+|... |++++|+..|++++.+.+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------ 71 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA------VYYTNRALCYLKM-QQPEQALADCRRALELDGQS------ 71 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHTTSCTTC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH------HHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC------
Confidence 3455556665555 66667777776666654432 3566777777765 77777777777777665542
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
..++..+|.++..+|++++|+..|+++....+++
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3566667777777777777777777766655544
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=7.2e-11 Score=114.53 Aligned_cols=157 Identities=9% Similarity=-0.040 Sum_probs=107.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET 125 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~ 125 (320)
.|++++|+.+|++++++.+ ..+.++..+|.++... ++++|+.+|++++++.+.+ +.++.++|.+|..
T Consensus 2 ~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~ 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------PEAVARLGRVRWT 69 (568)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 4788899999999988743 2356788999998887 9999999999999987755 3489999999999
Q ss_pred ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHH
Q psy9376 126 DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCH 205 (320)
Q Consensus 126 ~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (320)
. |++++|+.+|++++++.+.. ..++..+|.++...|++++|++.|+++....++.... +...+.++
T Consensus 70 ~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~ 135 (568)
T 2vsy_A 70 Q-QRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI-------TAQLLNWR 135 (568)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHH
Confidence 7 99999999999999997764 5789999999999999999999999999877654422 22333333
Q ss_pred Hhh-hhHHHHHHHHHHHHhCCCccC
Q psy9376 206 LCI-DVINAHNAIDRYKTIYPAFQD 229 (320)
Q Consensus 206 l~~-d~~~~~~A~~~y~~~~~~f~~ 229 (320)
... +.++.++|.+.++++....+.
T Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHhhccccHHHHHHHHHHHHhcCCc
Confidence 322 227777777777665444433
No 121
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=4.4e-10 Score=100.38 Aligned_cols=193 Identities=12% Similarity=0.084 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--------CCH-------HHHHHHHHHHHH-HHHHcCChHHHHH
Q psy9376 51 NNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK--------TDN-------EAAIDCLSKAIV-IYTDMGRFTMAAK 114 (320)
Q Consensus 51 ~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~--------~~~-------~eA~~~~~kA~~-l~~~~~~~~~aa~ 114 (320)
++|+..|++++.+.+ .....|.+.|..+.. .++ ++|+..|++|+. +.|+.. .
T Consensus 33 ~~a~~~~~~al~~~p------~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~------~ 100 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG------HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------L 100 (308)
T ss_dssp HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH------H
T ss_pred HHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH------H
Confidence 688889999998853 245567777776642 353 899999999999 666443 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
+|..+|.++... |++++|+..|++++.+.+... ..++..+|.++...|++++|+.+|+++....+....
T Consensus 101 ~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----- 169 (308)
T 2ond_A 101 LYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDP-----TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH----- 169 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTSSSSCT-----HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH-----
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhccccCc-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH-----
Confidence 799999999997 999999999999999866532 128899999999999999999999999976554321
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch---hhh-HHH
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL---DQW-YTT 270 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l---d~~-~~~ 270 (320)
.+...+.... ...++.++|...|+.+...+|.+.+.... ++... ...+++++|+..|++++.. +|- ...
T Consensus 170 --~~~~~a~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~--~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 170 --VYVTAALMEY-YCSKDKSVAFKIFELGLKKYGDIPEYVLA--YIDYL--SHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp --HHHHHHHHHH-HTSCCHHHHHHHHHHHHHHHTTCHHHHHH--HHHHH--HTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred --HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHH--HHHHH--HHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 1221111111 12356667777777666666766554432 22211 2568999999999999984 552 444
Q ss_pred HHH
Q psy9376 271 VLL 273 (320)
Q Consensus 271 ~l~ 273 (320)
++.
T Consensus 243 l~~ 245 (308)
T 2ond_A 243 IWA 245 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.16 E-value=3.3e-10 Score=89.31 Aligned_cols=105 Identities=11% Similarity=0.001 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 71 ~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
+.....+...|.++... ++++|+.+|++++.+.|.+.. ++..+|.+|... |++++|+.+|++++.+.|..
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~-- 85 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR------YFLGLGACRQSL-GLYEQALQSYSYGALMDINE-- 85 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH------HHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCC--
Confidence 44566777888888777 999999999999998876543 799999999997 99999999999999998775
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 150 NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 150 ~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++..+|.++..+|++++|+..|+++....++++
T Consensus 86 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 86 ----PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp ----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred ----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 35789999999999999999999999998876554
No 123
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=7e-10 Score=89.25 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q psy9376 72 DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR------------FTMAAKHHQTIAEIYETDCVDQEKAVEHYE 138 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~------------~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~ 138 (320)
..+..+.+.|..+... ++++|+.+|.+|+.+.+.... ...-+.++.++|.+|... |++++|+..++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~~~~ 87 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-GDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 5677888899998887 999999999999999654321 234456899999999997 99999999999
Q ss_pred HHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 139 QAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 139 kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
+++.+.+.. ..++..+|.++..+|++++|+..|+++....|+++
T Consensus 88 ~al~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 88 EVLKREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999997664 57899999999999999999999999999877765
No 124
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.16 E-value=6.5e-09 Score=107.86 Aligned_cols=247 Identities=15% Similarity=0.124 Sum_probs=158.6
Q ss_pred CCCHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRA---------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCL 96 (320)
Q Consensus 27 ~~~~~~A~~~y~~a---------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~ 96 (320)
.+++++|++++++. |..+...|++++|+++|.+| ++ ...|.+.+.++.+. ++++|+++|
T Consensus 1089 i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD----~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD----PSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46778888877554 78888889999999999886 22 34677788888887 889999999
Q ss_pred HHHHHHHH-------------HcCChHHHHH--------HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 97 SKAIVIYT-------------DMGRFTMAAK--------HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 97 ~kA~~l~~-------------~~~~~~~aa~--------~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
..|....+ +.++...... .+.++|..+... |+|++|+.+|.+| .
T Consensus 1158 ~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~e-g~YeeA~~~Y~kA--------------~ 1222 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV--------------S 1222 (1630)
T ss_pred HHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhh--------------h
Confidence 88774432 2233333222 366899999997 9999999999885 3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhh-cchhHhHHHHHHHHH---------------hhhhHHHHHHHHH
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLK-YSAKEYFFRAALCHL---------------CIDVINAHNAIDR 219 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l---------------~~d~~~~~~A~~~ 219 (320)
.|.++|.++.++|++++|+++++++........+.. .-..+-|..|..|.+ +...+..++|+.-
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 678899999999999999999999964322111000 000122222333332 2233445555555
Q ss_pred HHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh----------hHHHHHHHHH---------Hhhc
Q psy9376 220 YKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ----------WYTTVLLRIK---------KQVG 280 (320)
Q Consensus 220 y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~----------~~~~~l~~i~---------~~~~ 280 (320)
+++....-+. .... ...+...+....+++.-++++.|.+-+.+.| |...+.+=++ .-+.
T Consensus 1303 lE~aL~Lera-H~gm-ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1303 LEAALGLERA-HMGM-FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHhccChh-HhHH-HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 5443322211 1111 1222223444579999999999999999888 8888775432 1111
Q ss_pred C--------------CCCCchhhhchhHHHhHHHH
Q psy9376 281 R--------------TSLDSSLLKYSAKEYFFRAA 301 (320)
Q Consensus 281 ~--------------~~~~~~l~~~~~~~y~~~a~ 301 (320)
. ..+.|+=+.|-+-+||..-.
T Consensus 1381 h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1381 HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 1 14567778888888887544
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.14 E-value=2.6e-10 Score=94.95 Aligned_cols=136 Identities=18% Similarity=0.081 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH----------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKH----------DAACNLLDAANCFKKT-DNEAAIDCLSKAI 100 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~----------~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~ 100 (320)
..+..+...|..+...|+|++|+.+|.+++.+.+...+.. ....++.++|.+|... ++++|+.++++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3455566678888899999999999999998765432111 1147788888888887 8999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHH-HHHHH
Q psy9376 101 VIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAI-QIYEE 179 (320)
Q Consensus 101 ~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai-~~y~~ 179 (320)
.+.+.+. .++..+|.+|... |++++|+.+|++++.+.+.. ..++..++.++..++++.++. ..|.+
T Consensus 116 ~~~p~~~------~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 182 (198)
T 2fbn_A 116 KIDKNNV------KALYKLGVANMYF-GFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKDKLTFGG 182 (198)
T ss_dssp HHSTTCH------HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--------
T ss_pred HhCcccH------HHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8866443 4788999999886 99999999999999887664 467788888888888877776 44444
Q ss_pred H
Q psy9376 180 V 180 (320)
Q Consensus 180 ~ 180 (320)
+
T Consensus 183 ~ 183 (198)
T 2fbn_A 183 M 183 (198)
T ss_dssp -
T ss_pred H
Confidence 3
No 126
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.13 E-value=1.1e-10 Score=95.56 Aligned_cols=138 Identities=12% Similarity=0.008 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh-c-CCHH
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFK-K-TDNE 90 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~-~-~~~~ 90 (320)
.|++++|+..|+++ |.++...|++++|+..|++++...+ ++ ......+.+.. . .+..
T Consensus 19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----SYKSLIAKLELHQQAAES 91 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----HHHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----HHHHHHHHHHHHhhcccc
Confidence 56778888777664 6677778888888888888776532 11 11122222211 1 1334
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|+.++++++.+.|++.. ++..+|.++... |++++|+.+|++++...|.... ..++..+|.++..+|+.
T Consensus 92 ~a~~~~~~al~~~P~~~~------~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~----~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFE------LACELAVQYNQV-GRDEEALELLWNILKVNLGAQD----GEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHHHHHSTTCHH------HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTTTT----THHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccCh----HHHHHHHHHHHHHhCCC
Confidence 578888888887766533 788888888886 8888888888888887665321 24677788888888888
Q ss_pred HHHHHHHHHHHH
Q psy9376 171 NKAIQIYEEVGR 182 (320)
Q Consensus 171 ~~Ai~~y~~~~~ 182 (320)
++|+..|+++..
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888887763
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=2.2e-09 Score=90.74 Aligned_cols=137 Identities=16% Similarity=0.092 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHH------------HHHHHHcC----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----
Q psy9376 27 GNKIDEAIECYTRA------------ANMFKMAK----KWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK---- 86 (320)
Q Consensus 27 ~~~~~~A~~~y~~a------------g~~~~~~g----~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~---- 86 (320)
.+++++|+.+|+++ |.+|.. + ++++|+.+|+++++. + .+.++.++|.+|..
T Consensus 31 ~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g----~~~a~~~Lg~~y~~g~g~ 101 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----G----SKSGEIVLARVLVNRQAG 101 (212)
T ss_dssp HTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHTCGGGS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCC
Confidence 58999999999998 456665 6 999999999999653 3 35678899999987
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 87 T-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET----DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 87 ~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~----~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
. ++++|+.+|++|++. |..+..+.++.++|.+|.. . +++++|+.+|++|++. +.. ..++.++|
T Consensus 102 ~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~-~~~------~~a~~~Lg 169 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGP-EDDVKASEYFKGSSSL-SRT------GYAEYWAG 169 (212)
T ss_dssp SCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSS-CCHHHHHHHHHHHHHT-SCT------THHHHHHH
T ss_pred ccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHc-CCC------HHHHHHHH
Confidence 3 899999999999854 3333446689999999998 6 7999999999999987 222 24788999
Q ss_pred HHHHHc-c-----CHHHHHHHHHHHHHhh
Q psy9376 162 HHAALL-Q-----NYNKAIQIYEEVGRTS 184 (320)
Q Consensus 162 ~~~~~~-g-----~y~~Ai~~y~~~~~~~ 184 (320)
.+|... | ++++|+..|+++...+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999865 3 8999999999998764
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=6.4e-10 Score=92.97 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHH
Q psy9376 27 GNKIDEAIECYTRA-----------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAID 94 (320)
Q Consensus 27 ~~~~~~A~~~y~~a-----------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~ 94 (320)
.|++++|+..|.++ |.++...|++++|+.+|.+++.+.+ ....++.++|.+|... ++++|+.
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~lg~~~~~~~~~~~A~~ 92 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------HLAVAYFQRGMLYYQTEKYDLAIK 92 (213)
T ss_dssp TTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHcccHHHHHH
Confidence 57889998887754 8889999999999999999999842 2457889999999988 9999999
Q ss_pred HHHHHHHHHHHcC----------ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 95 CLSKAIVIYTDMG----------RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 95 ~~~kA~~l~~~~~----------~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
++++++.+.+.+. .....+.++.++|.+|... |++++|+.+|++++.+.+..
T Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-EEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCccc
Confidence 9999999988766 4445567899999999997 99999999999999998764
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.11 E-value=1.8e-10 Score=93.96 Aligned_cols=124 Identities=13% Similarity=0.136 Sum_probs=100.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-H
Q psy9376 46 MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEI-Y 123 (320)
Q Consensus 46 ~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~-y 123 (320)
..|++++|+..|.+++... + .....+..+|.+|... ++++|+.+|++++.+.+.+ +.++..+|.+ |
T Consensus 22 ~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~ 89 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-----P-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLY 89 (177)
T ss_dssp -----CCCCHHHHHHHHHC-----C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Confidence 3577788888888887763 2 2346788899999888 9999999999999998765 3479999999 8
Q ss_pred HhccCCH--HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 124 ETDCVDQ--EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 124 ~~~l~~~--~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
... |++ ++|+.+|++++.+.+.. ..++..+|.++...|++++|+..|+++....++++
T Consensus 90 ~~~-~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 90 YQA-SQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHT-TTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred Hhc-CCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 786 998 99999999999997764 46889999999999999999999999998776643
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.10 E-value=9.7e-10 Score=88.57 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF 109 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~ 109 (320)
..-.+.+...|..+...|++++|+.+|++++++.+ ....++.++|.+|... ++++|+.++++++.+.+.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 78 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--- 78 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Confidence 34445566678999999999999999999999853 2467899999999998 9999999999999998765
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 110 ~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
..++.++|.+|... |++++|+.+|++++.+.+....
T Consensus 79 ---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 79 ---SKAWSRLGLARFDM-ADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHSSSCC
T ss_pred ---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCchH
Confidence 34899999999997 9999999999999999988654
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.10 E-value=1.2e-09 Score=82.98 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
....-...+...|..+...|++++|+..|.+++...+ .....+..+|.++... ++++|+.++++++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 79 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY- 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-
Confidence 3444555666667888888888888888888887742 1255677788888777 8888888888888876543
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
..++..+|.++... |++++|+.+|++++.+.+.. ..++..+|.++..+|++
T Consensus 80 -----~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 -----SKAYGRMGLALSSL-NKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence 34788888888886 88888888888888886653 35677888888877764
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.08 E-value=6.7e-10 Score=92.42 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=101.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHH----------
Q psy9376 44 FKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMA---------- 112 (320)
Q Consensus 44 ~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~a---------- 112 (320)
....|++++|.+.|.....- ....+..+...|.++... ++++|+.+|.+++.+.+....+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 33455666666655544433 334677888889888877 9999999999999988776532222
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++.++|.+|... |++++|+.++++++.+.+.. ..++..+|.++..+|++++|+..|+++....++.+
T Consensus 88 ~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 88 ISCNLNLATCYNKN-KDYPKAIDHASKVLKIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 47899999999997 99999999999999997653 57899999999999999999999999998876654
No 133
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.07 E-value=1.2e-09 Score=100.60 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSG----------TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVI 102 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~----------~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l 102 (320)
+..+...|+.+...|++++|+.+|++++++..... .....+.+|.++|.+|... ++++|+.++++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34456668899999999999999999999765431 2345667888888888887 888888888888887
Q ss_pred HHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHH
Q psy9376 103 YTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQ 175 (320)
Q Consensus 103 ~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~ 175 (320)
.+.+ +.++..+|.+|... |++++|+.+|++|+++.+.. ..++..++.++..+++++++.+
T Consensus 303 ~p~~------~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSN------TKALYRRAQGWQGL-KEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchh------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 34788888888886 88888888888888887653 3567778888877777776653
No 134
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.07 E-value=4.7e-09 Score=79.78 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CChH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-GRFT 110 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~~~~ 110 (320)
..+.+...|..+...|++++|+.+|.+++...+ ....++..+|.+|... ++++|+.++++++.+.+.. +...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 345566678999999999999999999998842 2356788889998877 9999999999999999986 4455
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
..+.++..+|.+|... |++++|+.+|++++.+.+. ......++.+...+
T Consensus 77 ~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 QIAKAYARIGNSYFKE-EKYKDAIHFYNKSLAEHRT-------PDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHH
Confidence 5578999999999997 9999999999999998653 23455556555443
No 135
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.06 E-value=1.7e-09 Score=102.39 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGT---------KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIV 101 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~---------~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~ 101 (320)
.....+..-|+.+...|+|++|+.+|.+|+.+.+.... ....+.+|.++|.||... ++++|+.++++|+.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34455666789999999999999999999999764321 122368899999999998 99999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHH-HHHHH
Q psy9376 102 IYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQ-IYEEV 180 (320)
Q Consensus 102 l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~-~y~~~ 180 (320)
+.+.+ +.++.++|.+|... |++++|+.+|++|+++.+.. ..++..++.++..+|++++|.. .|.++
T Consensus 346 ~~p~~------~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDSAN------EKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQN------KAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HSTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcc------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98765 34899999999997 99999999999999997764 3578899999999999988864 34433
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.06 E-value=3e-09 Score=84.77 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTM 111 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~ 111 (320)
-.+.+...|..+...|++++|+..|.+++.+. + ....++..+|.++... ++++|+.+|++++.+.|.+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--- 90 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----H-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR--- 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch---
Confidence 34445556888999999999999999999884 2 2456788999999988 999999999999999887655
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
++.++|.+|... |++++|+.+|++++++.+...
T Consensus 91 ---~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 91 ---FPFHAAECLLQX-GELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp ---HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCG
T ss_pred ---HHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCC
Confidence 799999999997 999999999999999988643
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=2.4e-09 Score=81.38 Aligned_cols=107 Identities=19% Similarity=0.130 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc-CCc
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE-ESN 150 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~-~~~ 150 (320)
.+..+..+|.++... ++++|+.++++++.+.+.. +.++..+|.+|... |++++|+.+|++++.+.+.. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhH
Confidence 466788889998887 9999999999999987654 34799999999997 99999999999999998875 344
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 151 ~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
.....++..+|.++...|++++|++.|+++....++
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 444789999999999999999999999999887653
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.05 E-value=4.5e-09 Score=82.68 Aligned_cols=106 Identities=19% Similarity=0.094 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
+.+... .+...|..+...|++++|+..|.+++.+. | .....+..+|.+|... ++++|+.+|++++.+.|.+.
T Consensus 14 ~p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 14 SEDTLE-QLYALGFNQYQAGKWDDAQKIFQALCMLD-----H-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp CHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CHHHHH-HHHHHHHHHHHHccHHHHHHHHHHHHHhC-----C-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 444444 44456788888999999999999999884 2 2456788999999988 99999999999999988765
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
. ++.++|.+|... |++++|+.+|++++.+.+...
T Consensus 87 ~------~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 87 R------FPFHAAECHLQL-GDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp H------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCG
T ss_pred H------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCc
Confidence 5 799999999997 999999999999999998654
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.05 E-value=7.9e-10 Score=85.01 Aligned_cols=97 Identities=8% Similarity=-0.049 Sum_probs=72.9
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
+...|.++... ++++|+.++++++.+.|.+.. ++..+|.++... |++++|+.+|++++++.|.. ..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~------~~ 86 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREE------AWRSLGLTQAEN-EKDGLAIIALNHARMLDPKD------IA 86 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HH
Confidence 44455666555 888888888888887776533 788888888886 88888888888888887764 45
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
++..+|.++...|++++|+..|+++....|+
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 7788888888888888888888888765543
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.04 E-value=2.1e-09 Score=83.27 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
.+..+...|.++... ++++|+.+|++++.+.+.+. .++.++|.+|... |++++|+.+|++++.+.+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~---- 76 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA------VYYTNRALCYLKM-QQPEQALADCRRALELDGQS---- 76 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC----
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH------HHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCchh----
Confidence 356778888888877 89999999999999877643 4899999999997 99999999999999987763
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
..++..+|.++...|++++|+..|+++....++
T Consensus 77 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 --VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 568999999999999999999999999987665
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-09 Score=83.91 Aligned_cols=119 Identities=17% Similarity=0.100 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChH
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFT 110 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~ 110 (320)
.-...+...|..+...|++++|+.+|++++...+ ....++..+|.++... ++++|+.++++++.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---- 83 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---- 83 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----
Confidence 3344455567888888999999999998887632 2356788888888877 8888888888888876543
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~ 169 (320)
+.++..+|.+|... |++++|+.+|++++.+.+.. ..++..++.++...|+
T Consensus 84 --~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 --IKGYTRKAAALEAM-KDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp --HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGG------THHHHHHHHHHHHHTC
T ss_pred --hHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcC
Confidence 23788888888886 88899999888888887654 3567777877776653
No 142
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=7.1e-10 Score=98.33 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 38 TRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 38 ~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
...|..+...|++++|...|++++.+.+ ....++..+|.++... ++++|+..+++++...|.. ....
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~ 188 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSN------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQG 188 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTT------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHH
Confidence 4457778888999999999999998843 2356788888888887 8999999999987766521 1245
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
...+..+... ++.++|+..|++++...|.. ..++..+|.++...|++++|+..|+++....|+.
T Consensus 189 ~~~~~~l~~~-~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 189 LVAQIELLXQ-AADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHH-HTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHhh-cccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 5555556665 77888888888888887764 5678888888888888888888888888876665
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.02 E-value=1.3e-09 Score=103.32 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=106.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC---------hHHHHHHH
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR---------FTMAAKHH 116 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~---------~~~aa~~~ 116 (320)
.+++++|++.|.++.... ...+..+.+.|.++... ++++|+.+|++|+.+.+.... ....+.++
T Consensus 247 l~~~~~A~~~~~~~~~~~------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEECCCCGGGSCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 345667777777777663 35678889999999888 999999999999999987642 12235789
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
.++|.+|... |++++|+.+|++|+.+.+.. ..++.++|.+|..+|++++|+..|+++....+++.
T Consensus 321 ~nla~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 321 LNLAMCYLKL-REYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 9999999997 99999999999999998764 67899999999999999999999999998877654
No 144
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=2.4e-09 Score=94.90 Aligned_cols=164 Identities=11% Similarity=-0.053 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA 153 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a 153 (320)
..+...|..+... ++++|+..|++++.+.|++.. ++..+|.++... |++++|+..|++++...+. .
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~------a~~~la~~~~~~-g~~~~A~~~l~~~~~~~p~------~ 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE------IGLLLAETLIAL-NRSEDAEAVLXTIPLQDQD------T 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHHHT-TCHHHHHHHHTTSCGGGCS------H
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh------HHHHHHHHHHHC-CCHHHHHHHHHhCchhhcc------h
Confidence 4455666666665 899999999999988886643 788999999887 9999999999988887663 1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCCccCcHH
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSRE 232 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~f~~s~e 232 (320)
.......+..+...++.++|+..|+++....|++... +++.+...+.. +..++...+.......|.+.+..-
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~-------~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAAL-------ATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHH-------HHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3345556666778888888999999988877765532 23333333322 344444455555567888876665
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 233 YKLLRILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 233 ~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
...+..++.. .++.++|+..|++.+.
T Consensus 258 ~~~l~~~~~~-----~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAA-----LGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH-----HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----cCCCCcHHHHHHHHHH
Confidence 5556665542 4677788888877664
No 145
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=1.3e-09 Score=88.96 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+...|..+...|++++|+..|+++++..+ ....++..+|.++... ++++|+.++++++...| ... .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~------~ 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ------SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS------Y 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH------TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH------H
Confidence 44557788889999999999999999864 3457788999999888 99999999999987766 211 2
Q ss_pred HHHHHHH-HHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 116 HQTIAEI-YETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 116 ~~~la~~-y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+...+.+ +... +...+|+..|++++.+.|.. ..++..+|.++...|++++|+..|+++....|+
T Consensus 76 ~~~~~~~~~~~~-~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 76 KSLIAKLELHQQ-AAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHHHHHH-HTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhh-cccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 2223322 1122 33456899999999998874 578999999999999999999999999887654
No 146
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.99 E-value=3.1e-09 Score=81.38 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=86.6
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
+...|.++... ++++|+..+++++...|... ..+.++..+|.+|... |++++|+.+|++++...+.... ...
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~~~~---~~~ 77 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV---YTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPTHDK---AAG 77 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST---THHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTT---HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCCcc---cHH
Confidence 45566776666 89999999999988877544 2345789999999997 9999999999999998876432 457
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
++..+|.++..+|++++|+..|+++....|+++.
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 8899999999999999999999999987776543
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.99 E-value=1.2e-08 Score=77.29 Aligned_cols=106 Identities=21% Similarity=0.118 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 70 KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 70 ~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
....+..+...|.++... ++++|+.++++++.+.+.. +.++..+|.++... |++++|+.++++++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~- 79 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAY- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC-
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccC-
Confidence 345677888888998887 9999999999999987654 34899999999997 99999999999999987653
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 149 SNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 149 ~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++..+|.++...|++++|+.+|+++....++.+
T Consensus 80 -----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 80 -----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred -----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence 56889999999999999999999999998766543
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=1.5e-09 Score=96.04 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHH
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAA 113 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa 113 (320)
..+...|..+...|++++|+..|.+++.+.+ ..+.++.++|.+|... ++++|+..+++|+.+.+.+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------ 72 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV------ 72 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------
Confidence 3455668889999999999999999999842 2457889999999988 99999999999998876543
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
.++..+|.+|... |++++|+.+|++++.+.+...
T Consensus 73 ~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 73 KAHFFLGQCQLEM-ESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccch
Confidence 4899999999997 999999999999999988753
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.98 E-value=4.7e-09 Score=78.20 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS 152 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~ 152 (320)
+..+...|.++... ++++|+.++++++.+.|.. ..++..+|.++... |++++|+.++++++.+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~----- 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDW----- 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCccc-----
Confidence 45677777887776 8999999999998887654 34789999999987 99999999999999987653
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 153 ANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 153 a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++..+|.++...|++++|++.|+++....++.+
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 46888999999999999999999999987766544
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=4.3e-09 Score=80.46 Aligned_cols=104 Identities=18% Similarity=0.146 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc
Q psy9376 72 DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN 150 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~ 150 (320)
.....+...|.++... ++++|+.++++++.+.+.. +.++..+|.+|... |++++|+.+|++++.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~--- 83 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKL-LEFQLALKDCEECIQLEPTF--- 83 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCTTC---
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCc---
Confidence 4567788889998887 9999999999999886654 45899999999997 99999999999999987663
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 151 ~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++..+|.++...|++++|+.+|+++....+...
T Consensus 84 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 84 ---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred ---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 56899999999999999999999999998766543
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.96 E-value=9e-09 Score=77.36 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 36 ~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
.+...|..+...|++++|...|.+++...+ .....+..+|.++... ++++|+.++++++.+.+.. ..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 78 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AE 78 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HH
Confidence 334445555555555555555555554421 1123444445555444 5555555555555443322 12
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
++..+|.+|... |++++|+.+|++++.+.+
T Consensus 79 ~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 79 AWYNLGNAYYKQ-GDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHhCC
Confidence 445555555554 555555555555555443
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.95 E-value=1.8e-09 Score=82.01 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHH---HHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVI---YTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l---~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
++++|+.+|++++++ .|. -+.++.++|.+|... |++++|+.+|++++++.|.. ..++..+|.++
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~------~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~ 71 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKD------LAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNH------QALRVFYAMVL 71 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHH------HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHH
Confidence 577899999999887 443 345899999999997 99999999999999998875 57899999999
Q ss_pred HHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 165 ALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 165 ~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..+|++++|+..|+++....++++
T Consensus 72 ~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999998776654
No 153
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.95 E-value=1.4e-09 Score=98.87 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------ChHH-----HHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSG------TKHD-----AACNLLDAANCFKKT-DNEAAIDCLSKAI 100 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~------~~~~-----aa~~~~~aa~~y~~~-~~~eA~~~~~kA~ 100 (320)
.+..+...|+.+...|+|++|+.+|.+++.+..... .... ...+|.++|.+|... ++++|+.++++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555668888889999999999999998742210 0000 013788889998888 8999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Q psy9376 101 VIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA-LLQNYNKAIQIYEE 179 (320)
Q Consensus 101 ~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~-~~g~y~~Ai~~y~~ 179 (320)
.+.+.+. .++.++|.+|... |++++|+.+|++++.+.+.. ..++..++.+.. ..+..+++...|.+
T Consensus 258 ~~~p~~~------~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 258 TEEEKNP------KALFRRGKAKAEL-GQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp HHCTTCH------HHHHHHHHHHHTT-TCHHHHHHHHHHTTC--------------------------------------
T ss_pred HhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876543 4789999999996 99999999999999887764 346666777743 45677788888888
Q ss_pred HHHhhhhh
Q psy9376 180 VGRTSLDS 187 (320)
Q Consensus 180 ~~~~~~~~ 187 (320)
+....+++
T Consensus 325 ~l~~~p~~ 332 (338)
T 2if4_A 325 IFKGKDEG 332 (338)
T ss_dssp --------
T ss_pred hhCCCCCC
Confidence 87655543
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.95 E-value=6.8e-09 Score=80.27 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHH
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMA 112 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~a 112 (320)
...+...|..+...|++++|+.+|.+++.+.+ ....++.++|.++... ++++|+.++++++.+.|.+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----- 77 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV----- 77 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH-----
Confidence 34556678999999999999999999999853 2357899999999988 99999999999999877643
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
.++..+|.+|... |++++|+.+|++++.+.+..
T Consensus 78 -~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 78 -KAHFFLGQCQLEM-ESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp -HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHChhH
Confidence 3899999999997 99999999999999998873
No 155
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=2.2e-08 Score=75.92 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA 153 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a 153 (320)
.++..+|.++... ++++|+..+++++...+.. ..++..+|.++... |++++|+.++++++...+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRS------ 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCc------
Confidence 3566777777776 9999999999998875543 34788999999997 99999999999999986653
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTI 223 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~ 223 (320)
..++..+|.++...|++++|+..++++....+..... +...+.+ +...++.++|...+.+.
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~la~~--~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA-------WYNLGNA--YYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHH--HHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH-------HHHHHHH--HHHHccHHHHHHHHHHH
Confidence 4578899999999999999999999998765543321 2222222 23445556666655543
No 156
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.93 E-value=4.3e-10 Score=104.93 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
.|.++|..+... |.+++|+.+|.++ ..+..+|.++..+|+|++|++.|+++..... |.
T Consensus 124 a~~~IGd~~~~~-g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~------Wk- 181 (449)
T 1b89_A 124 HIQQVGDRCYDE-KMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRT------WK- 181 (449)
T ss_dssp --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHH------HH-
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchh------HH-
Confidence 789999999987 9999999999866 3677899999999999999999999942111 11
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHH
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLR 274 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~ 274 (320)
..+..+.+.++.+.|......+. .+|+..+ .++..+. ..|.+++|++.+++.+.+||-+.-+++.
T Consensus 182 -------~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~-----~lv~~Ye--k~G~~eEai~lLe~aL~le~ah~~~fte 246 (449)
T 1b89_A 182 -------EVCFACVDGKEFRLAQMCGLHIV-VHADELE-----ELINYYQ--DRGYFEELITMLEAALGLERAHMGMFTE 246 (449)
T ss_dssp -------HHHHHHHHTTCHHHHHHTTTTTT-TCHHHHH-----HHHHHHH--HTTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred -------HHHHHHHHcCcHHHHHHHHHHHH-hCHhhHH-----HHHHHHH--HCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 12233345566666655544432 3333322 2222222 4678888888888888888888777766
Q ss_pred HHHhhc
Q psy9376 275 IKKQVG 280 (320)
Q Consensus 275 i~~~~~ 280 (320)
+...+.
T Consensus 247 l~il~~ 252 (449)
T 1b89_A 247 LAILYS 252 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.93 E-value=1.2e-08 Score=76.68 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 71 ~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
...+..+..+|.++... ++++|+.++++++...+.. ..++..+|.++... |++++|+.+|++++...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~-- 76 (125)
T 1na0_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN-- 76 (125)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC--
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCcc--
Confidence 34567788889998887 9999999999999886543 34789999999997 99999999999999986653
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 150 NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 150 ~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..++..+|.++...|++++|+.+|+++....++.+
T Consensus 77 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 77 ----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 46788999999999999999999999988766544
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.90 E-value=1.7e-09 Score=80.06 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA 153 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a 153 (320)
..+..+|.++... ++++|+.++++++.+.+.. ..++..+|.+|... |++++|+.+|++++.+.+.. ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~----~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDE----YN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCT----TC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCccc----ch
Confidence 4566778888777 8999999999999886543 23789999999997 99999999999999987661 12
Q ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhhhh
Q psy9376 154 NKCLLKVAHHAALL-QNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 154 ~~~~~~la~~~~~~-g~y~~Ai~~y~~~~~~~~~ 186 (320)
..++..+|.++... |++++|+++++++....++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 56889999999999 9999999999999876554
No 159
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.89 E-value=4.9e-08 Score=92.13 Aligned_cols=189 Identities=12% Similarity=0.009 Sum_probs=127.3
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHcCChH
Q psy9376 39 RAANMFKMAK---KWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-----DNEAAIDCLSKAIVIYTDMGRFT 110 (320)
Q Consensus 39 ~ag~~~~~~g---~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-----~~~eA~~~~~kA~~l~~~~~~~~ 110 (320)
..|.+|...| ++++|+..|+++++.. + ..+..+.++|.+|... ++++|+.+|++|+ +.+.
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~--~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~--- 248 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVSRG----T--VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP--- 248 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTT----C--SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHCC----C--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---
Confidence 3467888888 8999999999998763 2 2345567888888764 7899999999987 4333
Q ss_pred HHHHHHHHHHHH-H--HhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHH
Q psy9376 111 MAAKHHQTIAEI-Y--ETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQ-----NYNKAIQIYEEVGR 182 (320)
Q Consensus 111 ~aa~~~~~la~~-y--~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g-----~y~~Ai~~y~~~~~ 182 (320)
.++.++|.+ | ... +++++|+.+|++|++.- ...++.++|.+|. .| ++++|+..|+++.
T Consensus 249 ---~a~~~Lg~~~~~~~~~-~d~~~A~~~~~~Aa~~g--------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 249 ---ASWVSLAQLLYDFPEL-GDVEQMMKYLDNGRAAD--------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp ---HHHHHHHHHHHHSGGG-CCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred ---HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 378899988 4 454 89999999999988542 2467888999988 55 9999999999887
Q ss_pred hhhhhhhhhcchhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHHHHhc--CHhHHHHHHHH
Q psy9376 183 TSLDSSLLKYSAKEYFFRAALCHLCI--DVINAHNAIDRYKTIYP-AFQDSREYKLLRILIEHIEEQ--NVDGFTEAVKD 257 (320)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~-~f~~s~e~~~l~~l~~a~~~~--d~~~~~~Ai~~ 257 (320)
++.+.. .++.+.++..- ...+.++|+..|+.+.. +++.+ . ..+..+ +..+ -..++.+|+..
T Consensus 315 --~g~~~A-------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A-~-~~Lg~~---y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 315 --GREVAA-------DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA-D-FAIAQL---FSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp --TTCHHH-------HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH-H-HHHHHH---HHSCTTBCCCHHHHHHH
T ss_pred --CCCHHH-------HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH-H-HHHHHH---HHhCCCCCCCHHHHHHH
Confidence 333221 23334333221 13477788888876543 33222 1 222332 2222 24578899999
Q ss_pred Hhhhcchhhh
Q psy9376 258 YDSISRLDQW 267 (320)
Q Consensus 258 ye~~~~ld~~ 267 (320)
|+++.+..+.
T Consensus 381 ~~~A~~~g~~ 390 (452)
T 3e4b_A 381 SQLAKAQDTP 390 (452)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHHCCCH
Confidence 9888765443
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.89 E-value=4.2e-09 Score=80.90 Aligned_cols=97 Identities=10% Similarity=-0.033 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 38 TRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 38 ~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
...|..+...|++++|+..|++++++.+ ..+.++..+|.++... ++++|+.++++|+++.|.+.. ++
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~ 88 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA------VH 88 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HH
Confidence 3457788889999999999999999842 2467888999999988 999999999999999886543 79
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
..+|.+|... |++++|+.+|++++++.+..
T Consensus 89 ~~la~~~~~~-g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 89 AALAVSHTNE-HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCcCC
Confidence 9999999997 99999999999999987753
No 161
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.88 E-value=6.2e-08 Score=89.13 Aligned_cols=109 Identities=18% Similarity=0.130 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG----------RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAA 141 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~----------~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~ 141 (320)
.+..+.+.|..+... ++++|+.+|++|+.+.+... .....+.++.++|.+|... |++++|+.+|++|+
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al 300 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM-SDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 456678888888877 99999999999999876642 3345567899999999997 99999999999999
Q ss_pred hHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 142 TYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
++.+.. ..++..+|.+|..+|++++|+..|+++....+++.
T Consensus 301 ~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 301 EIDPSN------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp TTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhCchh------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 987653 67899999999999999999999999998877654
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=2.1e-08 Score=74.60 Aligned_cols=110 Identities=16% Similarity=0.094 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHH
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAA 113 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa 113 (320)
+.+...|..+...|++++|+.+|++++...+ .....+..+|.++... ++++|+.++++++.+.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------ 72 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG------ 72 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH------
Confidence 4555668888999999999999999998742 2356788889998887 99999999999999876543
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHH
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHH 163 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~ 163 (320)
.++..+|.++... |++++|+.+|++++++.+.. ...+..++.+
T Consensus 73 ~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~ 115 (118)
T 1elw_A 73 KGYSRKAAALEFL-NRFEEAKRTYEEGLKHEANN------PQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCC------HHHHHHHHHh
Confidence 4799999999997 99999999999999987764 3455555554
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=6.9e-09 Score=84.32 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HhcC-CH
Q psy9376 26 GGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANC-FKKT-DN 89 (320)
Q Consensus 26 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~-y~~~-~~ 89 (320)
..|++++|++.|.++ |.++...|++++|+.+|.+++.+.+. ....+..+|.+ +... ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQH 95 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTC
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCc
Confidence 356677777666654 78889999999999999999998632 24678888888 7665 77
Q ss_pred --HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC
Q psy9376 90 --EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 90 --~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~ 149 (320)
++|+.++++++.+.|.+. .++..+|.+|... |++++|+.+|++++.+.+....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEI------TALMLLASDAFMQ-ANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCTTSC
T ss_pred chHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHc-ccHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999877543 3799999999997 9999999999999999887643
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.87 E-value=9e-10 Score=104.92 Aligned_cols=120 Identities=19% Similarity=0.120 Sum_probs=96.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQT 118 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~ 118 (320)
.|..+...|++++|+.+|++|+++.+ ..+.++.++|.+|... ++++|+.++++|+++.+.. +.++.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~ 79 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKGYYR 79 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 35566678899999999999998842 2467899999999998 9999999999999987654 348999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHH--HHHccCHHHHHHHHH
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHH--AALLQNYNKAIQIYE 178 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~--~~~~g~y~~Ai~~y~ 178 (320)
+|.+|... |++++|+.+|++++++.+... .++..++.+ +...|++++|++.++
T Consensus 80 lg~~~~~~-g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMAL-GKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999997 999999999999999987653 356667777 888999999999999
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=1e-09 Score=81.66 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS 152 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~ 152 (320)
+..+...|.++... ++++|+.+|++++.+.|.+ +.++.++|.+|... |++++|+.+|++++.+.+..+....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCccHHHH
Confidence 56678888888877 8999999999999987755 34799999999997 9999999999999999888766666
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy9376 153 ANKCLLKVAHHAALLQNYNKAIQIYEE 179 (320)
Q Consensus 153 a~~~~~~la~~~~~~g~y~~Ai~~y~~ 179 (320)
...++..+|.++..+|++++|+..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 678889999999999988887766554
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.86 E-value=3.3e-08 Score=75.48 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
..|..+...|++++|+..|.+++...+. ......++..+|.++... ++++|+.+|++++...|+... .+.++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~ 80 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGGLL 80 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHHHH
Confidence 4467788899999999999999987542 223457888899999888 999999999999998876543 345799
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 118 TIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 118 ~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
.+|.+|... |++++|+.+|++++..+|..
T Consensus 81 ~la~~~~~~-g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 81 KLGLSQYGE-GKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHCCCC
Confidence 999999997 99999999999999998764
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.85 E-value=2.4e-09 Score=102.03 Aligned_cols=129 Identities=21% Similarity=0.106 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
.+..+.+.|.++... ++++|+.+|++|+++.+.. +.++.++|.+|... |++++|+.+|++|+++.+..
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~---- 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKY---- 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTC----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC----
Confidence 455566667777776 9999999999999997665 45899999999997 99999999999999997653
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHH
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYK 221 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~ 221 (320)
..++.++|.+|..+|++++|++.|+++....++.... +...+.+..+...++.++|++.++
T Consensus 74 --~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~-------~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA-------KMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTH-------HHHHHHHHHHHHHHHHCCC-----
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999887665432 223344433445678888888877
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=4e-08 Score=76.49 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS 152 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~ 152 (320)
+..+...|.++... ++++|+.+|++++.+.+. ......++.++|.+|... |++++|+.+|++++.+.+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~----- 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGD----- 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccC-----
Confidence 44556666666655 777777777777665432 223456788888888886 88888888888888876553
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 153 ANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 153 a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
..++..+|.++...|++++|+.+|+++....++.
T Consensus 99 -~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4677788888888888888888888887765544
No 169
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.81 E-value=2.9e-07 Score=87.74 Aligned_cols=97 Identities=4% Similarity=-0.067 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHc-CC-hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHH
Q psy9376 86 KTDNEAAIDCLSKAIVIYTDM-GR-FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVA 161 (320)
Q Consensus 86 ~~~~~eA~~~~~kA~~l~~~~-~~-~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la 161 (320)
+.++++|+..+++++++.... |. -...+.++.+||.+|..+ |++++|+.+|++++++++.. .++...+..+.+||
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 349999999999999998653 43 457889999999999998 99999999999999998763 46677899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHh
Q psy9376 162 HHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 162 ~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
.+|..+|+|++|+.+|+++..+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999854
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.4e-08 Score=77.78 Aligned_cols=104 Identities=21% Similarity=0.144 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHH
Q psy9376 34 IECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMA 112 (320)
Q Consensus 34 ~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~a 112 (320)
...+...|..+...|++++|+.+|++++++.+ +.......+.++|.+|... ++++|+.++++++.+.+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------ 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence 44555668899999999999999999998642 2233478899999999888 9999999999999986654
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
..++..+|.+|... |++++|+.+|++++.+.+..
T Consensus 99 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 99 VKALYRRSQALEKL-GRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCc
Confidence 34899999999997 99999999999999987764
No 171
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.80 E-value=3e-08 Score=95.10 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--------CCHH-------HHHHHHHHHHH-HHHHcCChHHHHH
Q psy9376 51 NNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK--------TDNE-------AAIDCLSKAIV-IYTDMGRFTMAAK 114 (320)
Q Consensus 51 ~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~--------~~~~-------eA~~~~~kA~~-l~~~~~~~~~aa~ 114 (320)
..++..|++|+.+.+ .....|...|..+.. .+++ +|+..|++|+. +.|++ ..
T Consensus 255 ~~a~~~y~~al~~~p------~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~------~~ 322 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLG------HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN------ML 322 (530)
T ss_dssp HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC------HH
T ss_pred HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc------HH
Confidence 477889999998853 235678888888764 3655 89999999986 55533 34
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcch
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~ 194 (320)
.|..+|.++... |++++|...|++++++.+.. ...++...|.++.+.|++++|+++|+++....+....
T Consensus 323 l~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~----- 391 (530)
T 2ooe_A 323 LYFAYADYEESR-MKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH----- 391 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHSSSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH-----
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHhCccccC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH-----
Confidence 899999999997 99999999999999975542 2358899999999999999999999999876443211
Q ss_pred hHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 195 KEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 195 ~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
.++..+.++. ...++.++|...|+.+...+|++.+.... ++. + ....|++++|...|++++...|
T Consensus 392 -~~~~~a~~~~--~~~~~~~~A~~~~e~al~~~p~~~~~~~~--~~~-~-~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 392 -VYVTAALMEY--YCSKDKSVAFKIFELGLKKYGDIPEYVLA--YID-Y-LSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp -HHHHHHHHHH--HHTCCHHHHHHHHHHHHHHHTTCHHHHHH--HHH-H-HTTTTCHHHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHH--HHcCChhHHHHHHHHHHHHCCCCHHHHHH--HHH-H-HHhCCCHhhHHHHHHHHHhccC
Confidence 1111111211 12455667777777666667776655432 222 1 1257899999999999987644
No 172
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.79 E-value=5.7e-08 Score=90.61 Aligned_cols=198 Identities=13% Similarity=0.074 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHH-------------HHHHcCChHHH--------HHH
Q psy9376 27 GNKIDEAIECYTRA---------ANMFKMAKKWNNAGKAFVEAAN-------------LHMKSGTKHDA--------ACN 76 (320)
Q Consensus 27 ~~~~~~A~~~y~~a---------g~~~~~~g~~~~A~~~y~kA~~-------------~~~~~~~~~~a--------a~~ 76 (320)
.|++++|++.|.++ +..+...|++++|+.+++.+.+ ++.++|+.... ..+
T Consensus 45 ~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a 124 (449)
T 1b89_A 45 KGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAH 124 (449)
T ss_dssp ----------------------------------------------------------------CHHHHTTTTTCC----
T ss_pred cCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHH
Confidence 68999999998876 4566678999999998888764 23344433221 136
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~ 155 (320)
|..+|..+... .+++|+.+|.++ + .|..+|.++... |++++|+++|++|.. ..
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a-------~-------n~~~LA~~L~~L-g~yq~AVea~~KA~~-----------~~ 178 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV-------S-------NFGRLASTLVHL-GEYQAAVDGARKANS-----------TR 178 (449)
T ss_dssp ------------CTTTHHHHHHHT-------T-------CHHHHHHHHHTT-TCHHHHHHHHHHHTC-----------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-------h-------hHHHHHHHHHHh-ccHHHHHHHHHHcCC-----------ch
Confidence 77777777766 888888888876 2 489999999996 999999999999921 35
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCc-HHHH
Q psy9376 156 CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDS-REYK 234 (320)
Q Consensus 156 ~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s-~e~~ 234 (320)
++..++.++...|+++.|..+...+. ..+++. ..+..+++..|..++++..+++....-+.. .-+.
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l------------~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ft 245 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIV-VHADEL------------EELINYYQDRGYFEELITMLEAALGLERAHMGMFT 245 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhH------------HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence 77777888888888888865555422 122110 023344456667777777776654332221 1112
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 235 LLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 235 ~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
.+.- ++..-.+++..++++.|.+.+.+.|
T Consensus 246 el~i---l~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 246 ELAI---LYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HHHH---HHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHH---HHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 2222 2334467888888888877777777
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.78 E-value=9.6e-09 Score=77.95 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET 125 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~ 125 (320)
.|++++|+.+|++++++. .+.+....++.++|.+|... ++++|+.++++++.+.|++. .++..+|.+|..
T Consensus 3 ~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~ 73 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ------ALRVFYAMVLYN 73 (117)
T ss_dssp ----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHH
Confidence 588899999999998862 01235678899999999998 99999999999999988763 489999999999
Q ss_pred ccCCHHHHHHHHHHHHhHhhcc
Q psy9376 126 DCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 126 ~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
. |++++|+.+|++++...+..
T Consensus 74 ~-g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 74 L-GRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp H-TCHHHHHHHHHHHHHHHCCC
T ss_pred c-CCHHHHHHHHHHHHHhCCCc
Confidence 7 99999999999999998764
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.78 E-value=3.7e-09 Score=84.94 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=74.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-C----------HHHHHHHHHHHHHHHHHcCChHHHHH
Q psy9376 46 MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-D----------NEAAIDCLSKAIVIYTDMGRFTMAAK 114 (320)
Q Consensus 46 ~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~----------~~eA~~~~~kA~~l~~~~~~~~~aa~ 114 (320)
..+.|++|+.+|++++++. | ..+.+|.+.|.++... + +++|+.+|++|+++.|+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-----P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~------ 81 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-----P-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE------ 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------
T ss_pred HHhHHHHHHHHHHHHHHHC-----C-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH------
Confidence 3467789999999999984 3 3567899999988876 3 57999999999999987654
Q ss_pred HHHHHHHHHHhccC-----------CHHHHHHHHHHHHhHhhcc
Q psy9376 115 HHQTIAEIYETDCV-----------DQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 115 ~~~~la~~y~~~l~-----------~~~~Ai~~y~kA~~~~~~~ 147 (320)
+|.++|.+|... | ++++|+.+|++|+++-|..
T Consensus 82 A~~~LG~ay~~l-g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 82 AVWCIGNAYTSF-AFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHh-cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 899999999875 5 8999999999999998874
No 175
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.74 E-value=2.1e-07 Score=87.26 Aligned_cols=102 Identities=12% Similarity=-0.023 Sum_probs=90.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHH-cC-ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHH
Q psy9376 45 KMAKKWNNAGKAFVEAANLHMK-SG-TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-G-RFTMAAKHHQTI 119 (320)
Q Consensus 45 ~~~g~~~~A~~~y~kA~~~~~~-~~-~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~-~~~~aa~~~~~l 119 (320)
...|+|++|...|++++++..+ +| +....+..+.++|.+|... ++++|+.+++++++++... | +-...|..+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3468999999999999999875 44 4457899999999999998 9999999999999999764 4 457888999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
|.+|..+ |++++|+.+|++|++++...
T Consensus 389 a~~~~~q-g~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 389 GRLYMGL-ENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-cCHHHHHHHHHHHHHHHHHH
Confidence 9999998 99999999999999998763
No 176
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.74 E-value=1.9e-07 Score=88.14 Aligned_cols=198 Identities=14% Similarity=0.031 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHH--------------HHHHHHc----CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh---cC
Q psy9376 29 KIDEAIECYTRA--------------ANMFKMA----KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFK---KT 87 (320)
Q Consensus 29 ~~~~A~~~y~~a--------------g~~~~~~----g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~---~~ 87 (320)
++++|+.+|.++ |.+|... +++++|+..|++++ .++ +.++.++|.+|. ..
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----PASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----THHHHHHHHHHHHSGGG
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----HHHHHHHHHHHHhCCCC
Confidence 899999999877 3444333 69999999999987 233 457888899843 22
Q ss_pred -CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 88 -DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCV-----DQEKAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 88 -~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~-----~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
++++|+.+|++|++ .|+ +.++.++|.+|.. | ++++|+.+|++|+ +.. ..++.++|
T Consensus 265 ~d~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~--G~g~~~d~~~A~~~~~~Aa---~g~------~~A~~~Lg 325 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRA----ADQ----PRAELLLGKLYYE--GKWVPADAKAAEAHFEKAV---GRE------VAADYYLG 325 (452)
T ss_dssp CCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHH--CSSSCCCHHHHHHHHHTTT---TTC------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHc--CCCCCCCHHHHHHHHHHHh---CCC------HHHHHHHH
Confidence 99999999999984 344 3479999999985 6 9999999999999 322 56889999
Q ss_pred HHHHH----ccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCCCccCcHHHHH
Q psy9376 162 HHAAL----LQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI--DVINAHNAIDRYKTIYPAFQDSREYKL 235 (320)
Q Consensus 162 ~~~~~----~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~f~~s~e~~~ 235 (320)
.+|.. ..++++|+..|+++...+... ..++.+.++..- -..+..+|+..|..+...= .......
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~---------A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~ 395 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNGQNS---------ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDL 395 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTTCTT---------HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHH
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhChHH---------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence 99987 349999999999998743221 123344443321 1356778888887654321 1222223
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHhhhcchhhh
Q psy9376 236 LRILIEHIEEQNVDGFTEAVKDYDSISRLDQW 267 (320)
Q Consensus 236 l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~ 267 (320)
+..+. ...+.++..+|....++-.+..+-
T Consensus 396 l~~l~---~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 396 ATQLE---APLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HHHHH---TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HhCCHHHHHHHHHHHHHHHHhccc
Confidence 33332 234678888888888776554333
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.74 E-value=1.2e-06 Score=79.00 Aligned_cols=225 Identities=6% Similarity=-0.013 Sum_probs=156.9
Q ss_pred CCCHH-HHHHHHHHH--------------HHHHHHcCC----------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy9376 27 GNKID-EAIECYTRA--------------ANMFKMAKK----------WNNAGKAFVEAANLHMKSGTKHDAACNLLDAA 81 (320)
Q Consensus 27 ~~~~~-~A~~~y~~a--------------g~~~~~~g~----------~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa 81 (320)
+|.++ +|++++..+ +.++...+. +++++.++.+++...+ ....+|..-+
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P------Kny~aW~hR~ 115 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP------KSYGTWHHRC 115 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC------CCHHHHHHHH
Confidence 45554 789999887 344444443 6788888888887643 2344566666
Q ss_pred HHHhcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHhHhhccCCchHHHHHH
Q psy9376 82 NCFKKT---DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD-QEKAVEHYEQAATYFKGEESNSSANKCL 157 (320)
Q Consensus 82 ~~y~~~---~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~-~~~Ai~~y~kA~~~~~~~~~~~~a~~~~ 157 (320)
-++... .+++++.++.+++++.+.+.. +|..-+.+.... |. ++++++++.++++..+.+ ..++
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~------AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~N------~SAW 182 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFH------CWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSN------YSSW 182 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSCC------HHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCCC------HHHH
Confidence 776665 489999999999999988866 899999999986 88 699999999999988775 4577
Q ss_pred HHHHHHHHHc--------------cCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHh--------hhhHHHHH
Q psy9376 158 LKVAHHAALL--------------QNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLC--------IDVINAHN 215 (320)
Q Consensus 158 ~~la~~~~~~--------------g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--------~d~~~~~~ 215 (320)
...+.++..+ +.++++++++.++....|++... |. +.-++..-. ...+..++
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa-W~-----Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA-WF-----YHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH-HH-----HHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH-HH-----HHHHHHHhccCccccchHHHHHHHH
Confidence 7888887776 56899999999999988876542 22 111111100 02356778
Q ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHH
Q psy9376 216 AIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKK 277 (320)
Q Consensus 216 A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~ 277 (320)
+++.+.++.+..|++.-+.....++.... ...+..++....+++..++||-...-...+..
T Consensus 257 el~~~~elle~~pd~~w~l~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 257 ELESCKELQELEPENKWCLLTIILLMRAL-DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccchHHHHHHHHHHhh-cccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 88888877777777644322222221111 12456778999999999999987776655543
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.74 E-value=1.5e-08 Score=92.02 Aligned_cols=110 Identities=19% Similarity=0.105 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC------hHHH-----HHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy9376 72 DAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR------FTMA-----AKHHQTIAEIYETDCVDQEKAVEHYEQ 139 (320)
Q Consensus 72 ~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~------~~~a-----a~~~~~la~~y~~~l~~~~~Ai~~y~k 139 (320)
..+..+.+.|.++... ++++|+.+|++|+.+.+.... ...+ ..++.++|.+|... |++++|+.+|++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~-g~~~~A~~~~~~ 255 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL-KRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 4567788889998887 999999999999998765321 1111 13799999999997 999999999999
Q ss_pred HHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 140 AATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 140 A~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
++.+.+.. ..++.++|.+|..+|++++|+..|+++....++++
T Consensus 256 al~~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 256 VLTEEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 99997753 57899999999999999999999999987766544
No 179
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.73 E-value=1.8e-07 Score=87.69 Aligned_cols=134 Identities=11% Similarity=0.017 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cC-ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-C
Q psy9376 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMK-SG-TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-G 107 (320)
Q Consensus 32 ~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~-~~-~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~ 107 (320)
.+.+.... ...+...|+|++|...|++++++..+ +| +....+..+.++|.+|... ++++|+.++++++.++... |
T Consensus 286 ~~~~ll~~-ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 286 EVQESLKK-IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHHH-HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH-HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 34444443 34566789999999999999998754 33 4457899999999999887 9999999999999999764 3
Q ss_pred -ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHHHHHHHc
Q psy9376 108 -RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 108 -~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la~~~~~~ 167 (320)
+-...|..+.++|.+|..+ |++++|+.+|++|++++... .++....+++.+++.+...+
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~-g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQ-GMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 4577889999999999998 99999999999999998774 35667778888888887654
No 180
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.73 E-value=1.4e-07 Score=74.16 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET- 125 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~- 125 (320)
+|+++|+..|+++++. +++. +. +|.+|... ..++|+++|++|++. |+ +.+..++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~----g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL----NEMF----GC--LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHT----TCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcC----CCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcC
Confidence 4677788888887755 3333 12 88998887 888899999999865 44 3479999999998
Q ss_pred ---ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhh
Q psy9376 126 ---DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL----LQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 126 ---~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~----~g~y~~Ai~~y~~~~~~~ 184 (320)
. +++++|+.+|++|++. +. ..+..++|.+|.. .+++++|++.|+++....
T Consensus 71 ~g~~-~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 71 KYVK-KDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSC-CCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCC-ccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6 8999999999999975 22 5688999999999 899999999999998753
No 181
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=3.8e-07 Score=81.58 Aligned_cols=219 Identities=8% Similarity=-0.052 Sum_probs=152.0
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH----hc-
Q psy9376 28 NKIDEAIECYTRA--------------ANMFKMAK--KWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCF----KK- 86 (320)
Q Consensus 28 ~~~~~A~~~y~~a--------------g~~~~~~g--~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y----~~- 86 (320)
...++|+.++.++ +.++...| ++++++.++.+++..+++ ...+|..-+.++ ..
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHhc
Confidence 4447899999887 56777788 999999999999988543 223444444554 22
Q ss_pred ---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 87 ---TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQE--KAVEHYEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 87 ---~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~--~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
.++++++.++.++++..|++-. +|..-+.++... |.++ ++++++.++++..+.+ ..++..-+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~------aW~~R~~vl~~l-~~~~~~~EL~~~~~~i~~d~~N------~sAW~~R~ 187 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHH------VWSYRKWLVDTF-DLHNDAKELSFVDKVIDTDLKN------NSAWSHRF 187 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh-cccChHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 3789999999999999888765 899999999996 9998 9999999999987765 45778888
Q ss_pred HHHHHccC------HHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHH-HHhCC---CccCcH
Q psy9376 162 HHAALLQN------YNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRY-KTIYP---AFQDSR 231 (320)
Q Consensus 162 ~~~~~~g~------y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y-~~~~~---~f~~s~ 231 (320)
.++..+|+ +++++++++++....|++... |..+. ++. ...+....++..+ .+... .-+.+.
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa-W~y~~-----~ll---~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPST-WNYLL-----GIH---ERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH-HHHHH-----HHH---HHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccH-HHHHH-----HHH---HhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 88888887 999999999999887765532 22211 111 1111112222222 22211 113332
Q ss_pred -HHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcc-hhhhHHHHHHHHHHhh
Q psy9376 232 -EYKLLRILIEHIEEQNVDGFTEAVKDYDSISR-LDQWYTTVLLRIKKQV 279 (320)
Q Consensus 232 -e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~-ld~~~~~~l~~i~~~~ 279 (320)
--.++.+++. ..++.++|++.|+.++. +||-....+.-..+.+
T Consensus 259 ~al~~la~~~~-----~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 259 FALETLAKIYT-----QQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-----ccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 2233444432 35789999999999995 8999888877655444
No 182
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.72 E-value=3.2e-07 Score=87.90 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=104.2
Q ss_pred HHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHH
Q psy9376 32 EAIECYTRA---------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDC 95 (320)
Q Consensus 32 ~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~ 95 (320)
+|...|++| |..+...|++++|...|++++++. +......|...+.++... ++++|...
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-----SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-----ccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 788888777 456677899999999999999863 222235788888887766 88999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy9376 96 LSKAIVIYTDMGRFTMAAKHHQTIAEI-YETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAI 174 (320)
Q Consensus 96 ~~kA~~l~~~~~~~~~aa~~~~~la~~-y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai 174 (320)
|++|+...+.. ...+...+.+ +... |++++|..+|+++++.+|.. ..++..++.++...|++++|.
T Consensus 379 ~~~Al~~~~~~------~~~~~~~a~~~~~~~-~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 379 FKKAREDARTR------HHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHTCTTCC------THHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHhccCCc------hHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhCCCHhhHH
Confidence 99998764321 1233344433 4455 99999999999999998764 568889999999999999999
Q ss_pred HHHHHHHHhhh
Q psy9376 175 QIYEEVGRTSL 185 (320)
Q Consensus 175 ~~y~~~~~~~~ 185 (320)
.+|+++....+
T Consensus 446 ~~~~~al~~~~ 456 (530)
T 2ooe_A 446 VLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHhccC
Confidence 99999987643
No 183
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.70 E-value=1.3e-07 Score=88.75 Aligned_cols=95 Identities=7% Similarity=-0.056 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHHc-CC-hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDM-GR-FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSANKCLLKVAHH 163 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~-~~-~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a~~~~~~la~~ 163 (320)
++++|+..+++++++..+. |. -...+.++.++|.+|..+ |++++|+.+|+++++++... .++...+..+.++|.+
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 7999999999999998653 43 467889999999999998 99999999999999998763 4677889999999999
Q ss_pred HHHccCHHHHHHHHHHHHHh
Q psy9376 164 AALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 164 ~~~~g~y~~Ai~~y~~~~~~ 183 (320)
|..+|+|++|+.+|+++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999864
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.69 E-value=2.4e-08 Score=80.24 Aligned_cols=88 Identities=9% Similarity=0.046 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCH----------HHHHHHHHHHHhHhhccCCchHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQ----------EKAVEHYEQAATYFKGEESNSSANKCL 157 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~----------~~Ai~~y~kA~~~~~~~~~~~~a~~~~ 157 (320)
.+++|+.++++|+++.|.... .|.++|.++... +++ ++||..|++|+++.|.. .+++
T Consensus 17 ~feeA~~~~~~Ai~l~P~~ae------a~~n~G~~l~~l-~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~A~ 83 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDAD------NLTRWGGVLLEL-SQFHSISDAKQMIQEAITKFEEALLIDPKK------DEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHh-cccchhhhhHhHHHHHHHHHHHHHHhCcCc------HHHH
Confidence 488999999999999887654 799999998885 765 59999999999998874 6789
Q ss_pred HHHHHHHHHcc-----------CHHHHHHHHHHHHHhhhhhh
Q psy9376 158 LKVAHHAALLQ-----------NYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 158 ~~la~~~~~~g-----------~y~~Ai~~y~~~~~~~~~~~ 188 (320)
.++|.+|..+| ++++|+++|+++....|++.
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999875 89999999999999887654
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.60 E-value=1.1e-07 Score=71.54 Aligned_cols=83 Identities=14% Similarity=0.028 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 91 AAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 91 eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
+|+.+|++++...|.+. .++..+|.+|... |++++|+.+|++++.+.+.. ..++..+|.++...|++
T Consensus 3 ~a~~~~~~al~~~p~~~------~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM------LLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CHHHHHHHHHTTTCCCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCCCcH------HHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCH
Confidence 57888999988776443 4899999999997 99999999999999997764 56889999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy9376 171 NKAIQIYEEVGRTSLD 186 (320)
Q Consensus 171 ~~Ai~~y~~~~~~~~~ 186 (320)
++|+..|+++....+.
T Consensus 70 ~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 70 AGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999876554
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.58 E-value=2.5e-07 Score=65.77 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
.+..+..+|.++... ++++|+.++++++.+.+.. ..++..+|.+|... |++++|+.+|++++.+.+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~---- 76 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN---- 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCC----
Confidence 445556666666555 6666666666666654433 23566666666665 66666666666666665442
Q ss_pred HHHHHHHHHHHHHHHc
Q psy9376 152 SANKCLLKVAHHAALL 167 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~ 167 (320)
..++..+|.++...
T Consensus 77 --~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 77 --AEAKQNLGNAKQKQ 90 (91)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhc
Confidence 34555666665544
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.7e-08 Score=74.85 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHH
Q psy9376 35 ECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAA 113 (320)
Q Consensus 35 ~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa 113 (320)
+.+...|..+...|++++|+.+|++++++.+ ....++.++|.++... ++++|+.++++++.+.|+++.....+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 4556678999999999999999999999843 2357789999999998 99999999999999999887777778
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQ 139 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~k 139 (320)
.++..+|.++... |++++|+..+++
T Consensus 79 ~~~~~~~~~~~~~-~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAV-GSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHH-HCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHH-HhHhhhHhHHHH
Confidence 8999999999996 888877766543
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=1.1e-07 Score=69.97 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKH 115 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~ 115 (320)
+...|.++...|++++|+.+|.+++++.+ .....+..+|.++... ++++|+.++++++.+.+.. ....+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~ 78 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP------EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNKDV 78 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chHHH
Confidence 34457888889999999999999998742 1345788899999888 9999999999999886651 12348
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHhHhhcc
Q psy9376 116 HQTIAEIYETDC-VDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 116 ~~~la~~y~~~l-~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+..+|.++.. + |++++|+.++++++...+..
T Consensus 79 ~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 79 WAAKADALRY-IEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTT-CSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHhhcccCC
Confidence 9999999988 8 99999999999999887653
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=6.1e-07 Score=79.03 Aligned_cols=131 Identities=13% Similarity=-0.028 Sum_probs=102.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
+..+...|+|++|.+.|..+... .+... .....|.++.+. ++++|+.+++++... .++.....++..+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~-----~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~~~L 177 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVA-----GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCT-----TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-----CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHHHHH
Confidence 56778899999999999888763 34444 555556676666 999999999866432 2333445689999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
|.++... |++++|+.+|++++.- ...+....+.....|.++..+|+.++|...|+++....|+
T Consensus 178 G~al~~L-G~~~eAl~~l~~a~~g---~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 178 GVAAANL-ALFTEAERRLTEANDS---PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHTS---TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHC-CCHHHHHHHHHHHhcC---CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 9999996 9999999999999842 1113335678899999999999999999999999987776
No 190
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.53 E-value=6.9e-07 Score=83.75 Aligned_cols=105 Identities=9% Similarity=-0.109 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc--CCchHH
Q psy9376 78 LDAANCFKKTDNEAAIDCLSKAIVIYTDM-G-RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE--ESNSSA 153 (320)
Q Consensus 78 ~~aa~~y~~~~~~eA~~~~~kA~~l~~~~-~-~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~--~~~~~a 153 (320)
..+..+..+.++++|+..+++++++..+. | +-...+.++.++|.+|..+ |++++|+.++++++.+++.. .++...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 34444555568999999999999886532 3 2356788999999999998 99999999999999998763 467778
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy9376 154 NKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~ 183 (320)
+..+.++|.+|..+|++++|+.+|+++..+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999864
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.50 E-value=3.1e-07 Score=69.01 Aligned_cols=85 Identities=9% Similarity=0.064 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCH
Q psy9376 52 NAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQ 130 (320)
Q Consensus 52 ~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~ 130 (320)
.|+..|+++++..+ .....+..+|.+|... ++++|+.++++++.+.+... .++..+|.+|... |++
T Consensus 3 ~a~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQGT------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS------VAWKWLGKTLQGQ-GDR 69 (115)
T ss_dssp CHHHHHHHHHTTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHH-TCH
T ss_pred HHHHHHHHHHHhCC------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHc-CCH
Confidence 46778888877632 2356788999999888 99999999999999877553 3799999999997 999
Q ss_pred HHHHHHHHHHHhHhhccCC
Q psy9376 131 EKAVEHYEQAATYFKGEES 149 (320)
Q Consensus 131 ~~Ai~~y~kA~~~~~~~~~ 149 (320)
++|+.+|++++.+.+..++
T Consensus 70 ~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 9999999999999887654
No 192
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=2.9e-07 Score=81.05 Aligned_cols=205 Identities=13% Similarity=0.041 Sum_probs=140.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-------HHHHhcC-CHHHHHHHHHHHHHHHHHc--------CCh
Q psy9376 46 MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDA-------ANCFKKT-DNEAAIDCLSKAIVIYTDM--------GRF 109 (320)
Q Consensus 46 ~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~a-------a~~y~~~-~~~eA~~~~~kA~~l~~~~--------~~~ 109 (320)
..+++..|..+|.++..+.+ ..+.+|... +.++... +..+++..+.+++.+.+.. |-+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP------~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE------SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHhCh------hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence 47999999999999999942 467778777 6776666 6778888899988876543 211
Q ss_pred -------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 110 -------TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 110 -------~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
...-......+.++... |+|++|.+.|...+...+. .. ....+|.++...|++++|+..|+++..
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~-g~y~eA~~~l~~~~~~~p~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQ-GNYADAMEALEAAPVAGSE------HL-VAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHH-TCHHHHHHHHTSSCCTTCH------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred cccccccCCHhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCc------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 12234566678888887 9999999999877764332 23 778889999999999999999986654
Q ss_pred hhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCc--cC-cHHHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy9376 183 TSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAF--QD-SREYKLLRILIEHIEEQNVDGFTEAVKDYD 259 (320)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f--~~-s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye 259 (320)
... +.. .....+..+. .+...++.++|+..|++....- |. ..+..+...++ ....|+.++|...|+
T Consensus 164 ~~d--~~~---~~~a~~~LG~--al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gla----L~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 164 WPD--KFL---AGAAGVAHGV--AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMA----RRSQGNESAAVALLE 232 (282)
T ss_dssp CSC--HHH---HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHH----HHHHTCHHHHHHHHH
T ss_pred cCC--ccc---HHHHHHHHHH--HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHH----HHHcCCHHHHHHHHH
Confidence 321 100 0011122222 2346788899999998774332 33 33333332222 225799999999999
Q ss_pred hhcchhhhHHHHHHHHH
Q psy9376 260 SISRLDQWYTTVLLRIK 276 (320)
Q Consensus 260 ~~~~ld~~~~~~l~~i~ 276 (320)
++...+|- ..+...+.
T Consensus 233 ~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 233 WLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHSCC-HHHHHHHH
T ss_pred HHHhcCCc-HHHHHHHh
Confidence 99999998 77765554
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.47 E-value=9.6e-07 Score=64.90 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN 150 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~ 150 (320)
...++..+|.+|... ++++|+.+|++++++.|.... ++..+|.+|... |++++|+..|++++++.+..++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~-g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG------TYYHLGKLYERL-DRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH------HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhhhcCCch
Confidence 346788889998887 999999999999999887655 799999999997 99999999999999998776653
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.46 E-value=1.1e-06 Score=68.82 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc----C-CHHH
Q psy9376 27 GNKIDEAIECYTRA----------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK----T-DNEA 91 (320)
Q Consensus 27 ~~~~~~A~~~y~~a----------g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~----~-~~~e 91 (320)
.+|+++|+.+|.++ |.+|...+..++|+..|++|++. + .+.+..++|.+|.. . ++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~----g----~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACEL----N----SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcC----C----CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35777888888776 45666667888999999999976 3 35678899999987 3 8999
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET----DCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~----~l~~~~~Ai~~y~kA~~~ 143 (320)
|+.+|++|++. |+ +.+..++|.+|.. . +++++|+.+|++|++.
T Consensus 80 A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGL----ND----QDGCLILGYKQYAGKGVV-KNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHHC
Confidence 99999999864 55 3478999999998 7 8999999999999986
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.42 E-value=1.3e-06 Score=64.10 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+.++..+|.+|... |++++|+.+|++++++.+.. ..++..+|.++..+|++++|++.|+++....+.
T Consensus 7 ~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKH-DNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 35799999999997 99999999999999998875 358999999999999999999999999876544
No 196
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=1.4e-05 Score=72.02 Aligned_cols=208 Identities=8% Similarity=-0.006 Sum_probs=145.9
Q ss_pred HHcCCHH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-C----------HHHHHHHHHHHHHHHHHcCChHHH
Q psy9376 45 KMAKKWN-NAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-D----------NEAAIDCLSKAIVIYTDMGRFTMA 112 (320)
Q Consensus 45 ~~~g~~~-~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~----------~~eA~~~~~kA~~l~~~~~~~~~a 112 (320)
+..|+++ +|+.++.+++.+.+ . ...++..-+.++... . +++++.++.+++...|++-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-----~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~---- 109 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-----D-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---- 109 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-----T-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-----h-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH----
Confidence 3467765 78999999998853 2 233444444555443 1 57899999999988887655
Q ss_pred HHHHHHHHHHHHhccC--CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhhhhhhh
Q psy9376 113 AKHHQTIAEIYETDCV--DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN-YNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 113 a~~~~~la~~y~~~l~--~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~-y~~Ai~~y~~~~~~~~~~~~ 189 (320)
+|..-+.++... + .++++++++.++++..+.+ ..++..-+.+....|. +++++++++++....+.+..
T Consensus 110 --aW~hR~wlL~~l-~~~~~~~EL~~~~k~l~~dprN------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S 180 (331)
T 3dss_A 110 --TWHHRCWLLSRL-PEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180 (331)
T ss_dssp --HHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred --HHHHHHHHHhcc-CcccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence 899999999985 8 4899999999999988775 5688888999999998 69999999999988776543
Q ss_pred hhcchhHhHHHHHHHHHhh----------hhHHHHHHHHHHHHhCCCccCcHHHHH-HHHHHHHHHh------cCHhHHH
Q psy9376 190 LKYSAKEYFFRAALCHLCI----------DVINAHNAIDRYKTIYPAFQDSREYKL-LRILIEHIEE------QNVDGFT 252 (320)
Q Consensus 190 ~~~~~~~~~~~a~~~~l~~----------d~~~~~~A~~~y~~~~~~f~~s~e~~~-l~~l~~a~~~------~d~~~~~ 252 (320)
.|..++.. +..+.. +.+..+++++.+.++....|....... +.-++..... ...+.++
T Consensus 181 -AW~~R~~l----l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 181 -SWHYRSCL----LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp -HHHHHHHH----HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred -HHHHHHHH----HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 24433332 222211 125677888888877666666655543 2333321100 0126899
Q ss_pred HHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 253 EAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 253 ~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
++|+.++++++++|.+..++..+-
T Consensus 256 ~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 256 SELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccchHHHHHH
Confidence 999999999999998877765443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.39 E-value=4.5e-06 Score=59.05 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..+..+..+|.++... |++++|+.+|++++.+.+.. ..++..+|.++...|++++|+..|+++....++.+
T Consensus 7 ~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 4567899999999997 99999999999999987653 56889999999999999999999999998766544
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.31 E-value=5.8e-06 Score=59.86 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK-CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~-~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
..+.|.++... |++++|+.+|+++++..+.. .. ++..+|.++...|++++|++.|+++....++.
T Consensus 3 ~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQ-GDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHH-TCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 35678888887 99999999999999987764 45 89999999999999999999999998766554
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=7.8e-06 Score=79.34 Aligned_cols=143 Identities=3% Similarity=-0.081 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHH--------------HHHHHHcCC----------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRA--------------ANMFKMAKK----------WNNAGKAFVEAANLHMKSGTKHDAACNLLDAANC 83 (320)
Q Consensus 28 ~~~~~A~~~y~~a--------------g~~~~~~g~----------~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~ 83 (320)
...++|++.+.++ +.++...|+ ++++++++.++++..+ ....+|..-+-+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p------K~y~aW~hR~w~ 116 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP------KSYGTWHHRCWL 116 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHH
Confidence 4456889998887 456666677 9999999999998743 234566666777
Q ss_pred HhcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 84 FKKT---DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCV-DQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 84 y~~~---~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~-~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
+... +++++++++.+++++.+++.. +|...+.+.... | .++++++++.++++..+.+ ..+|..
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~------aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n------~saW~~ 183 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFH------CWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSN------YSSWHY 183 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCC------HHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhcccccc------HHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCC------ccHHHH
Confidence 7766 569999999999999988765 899999999986 8 8999999999999987775 467888
Q ss_pred HHHHHHHc--------------cCHHHHHHHHHHHHHhhhhhhh
Q psy9376 160 VAHHAALL--------------QNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 160 la~~~~~~--------------g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.+.++..+ +.+++|+++++++....|++..
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 88888775 6689999999999988777553
No 200
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.21 E-value=1e-05 Score=59.99 Aligned_cols=75 Identities=12% Similarity=0.036 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC-chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES-NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~-~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.-.+.+|..+... ++|.+|+.+|++|+...+.... ......++..+|.++.++|++++|+.+++++....|+++.
T Consensus 6 ~dc~~lG~~~~~~-~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTE-ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHc-cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3467899999997 9999999999999998865432 2345789999999999999999999999999988777654
No 201
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=98.20 E-value=0.0011 Score=59.21 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=132.5
Q ss_pred CCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q psy9376 27 GNKI---DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAAIDCLSKAIV 101 (320)
Q Consensus 27 ~~~~---~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA~~~~~kA~~ 101 (320)
.|+| =+|-..|.-..+.|...++|++|++.....+....+.+....+++.-..+..+|.+. .+++ +...+.++
T Consensus 25 ~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~--~~~~rL~~ 102 (336)
T 3lpz_A 25 EGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG--ASRGKLLG 102 (336)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH--HHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Confidence 4666 667777766667777777777777766666666666665555555555555555554 2221 23344444
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH--
Q psy9376 102 IYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE-- 179 (320)
Q Consensus 102 l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~-- 179 (320)
++......... ... =..+||.|=.+.-+ ...|+ .+....+|.+|.+.|++.+|..+|--
T Consensus 103 L~~~~~~~~p~----------r~~---fi~~ai~WS~~~g~--~~~Gd----p~LH~~ig~~~~~e~~~~~Ae~H~ilg~ 163 (336)
T 3lpz_A 103 CLRLFQPGEPV----------RKR---FVKEMIDWSKKFGD--YPAGD----PELHHVVGTLYVEEGEFEAAEKHLVLGT 163 (336)
T ss_dssp HHTTSCTTCHH----------HHH---HHHHHHHHHHHHSS--CTTCC----HHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHhCCCCCcH----------HHH---HHHHHHHHHhhcCC--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence 44333211000 000 02333433322111 01111 23344455555555555555444420
Q ss_pred ---------HH-HhhhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhC----CC---------------ccC
Q psy9376 180 ---------VG-RTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIY----PA---------------FQD 229 (320)
Q Consensus 180 ---------~~-~~~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~----~~---------------f~~ 229 (320)
+. .+..... .-..--+..++++.+|+. ....+..+++.|.+.. +. ||.
T Consensus 164 ~~s~~~~a~mL~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~ 241 (336)
T 3lpz_A 164 KESPEVLARMEYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPS 241 (336)
T ss_dssp TTHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTT
T ss_pred CchHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCC
Confidence 00 0000000 001123346788888887 6788888888886532 21 455
Q ss_pred cHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhh-hHHHHHHHHHHhhcCC-C--CCchhh
Q psy9376 230 SREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ-WYTTVLLRIKKQVGRT-S--LDSSLL 289 (320)
Q Consensus 230 s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~-~~~~~l~~i~~~~~~~-~--~~~~l~ 289 (320)
..--.++.-|+.+++.++..-|..-.+.|+..++-|| --...|.+|.+.+=+. . ..|+|.
T Consensus 242 ~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~prq~n~L~ 305 (336)
T 3lpz_A 242 LPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQRPRQSNPLL 305 (336)
T ss_dssp CHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCCCCCCCHHH
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCCCCCCCchH
Confidence 5555677777778988889999999999999999898 5566888888776543 2 255554
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.20 E-value=2.9e-05 Score=75.29 Aligned_cols=172 Identities=6% Similarity=0.016 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhHhhccCCchHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD----------QEKAVEHYEQAATYFKGEESNSSANKCL 157 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~----------~~~Ai~~y~kA~~~~~~~~~~~~a~~~~ 157 (320)
-.++|+.++.+++.+.|++-. +|..-+.++... |+ ++++++++++++...++. ..+|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~t------aW~~R~~~l~~l-~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------y~aW 110 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFAT------LWNCRREVLQHL-ETEKSPEESAALVKAELGFLESCLRVNPKS------YGTW 110 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred CCHHHHHHHHHHHHHCchhHH------HHHHHHHHHHhc-ccccchhhhhhhHHHHHHHHHHHHHhCCCC------HHHH
Confidence 467899999999999887755 799999998885 88 999999999999998875 5688
Q ss_pred HHHHHHHHHcc--CHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhH-HHHHHHHHHHHhCCCccCcHHHH
Q psy9376 158 LKVAHHAALLQ--NYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVI-NAHNAIDRYKTIYPAFQDSREYK 234 (320)
Q Consensus 158 ~~la~~~~~~g--~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~-~~~~A~~~y~~~~~~f~~s~e~~ 234 (320)
..-+.++...| ++++|++.+++++...+.+.. .|..+++. . ...+ ..+++++.+.++....+.....+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~-aW~~R~~~-----l---~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFH-CWDYRRFV-----A---AQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH-----H---HHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhcccccc-HHHHHHHH-----H---HHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 99999999999 779999999999998776543 24333321 1 1223 56788999988888777765554
Q ss_pred HH-HHHHHHHHh---------cCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcC
Q psy9376 235 LL-RILIEHIEE---------QNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGR 281 (320)
Q Consensus 235 ~l-~~l~~a~~~---------~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~ 281 (320)
.- ..++..+.. -+.+.++++++.+++++.++|.....+.-.+-.+..
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 33 334332210 124789999999999999999999888877766653
No 203
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=2e-05 Score=71.44 Aligned_cols=144 Identities=6% Similarity=-0.065 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC---C
Q psy9376 27 GNKIDEAIECYTRA--------------ANMFKMAK-KWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT---D 88 (320)
Q Consensus 27 ~~~~~~A~~~y~~a--------------g~~~~~~g-~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~---~ 88 (320)
.+..++|++++.++ +.++...| ++++++.++.+++...+ ....+|..-+.++... +
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP------Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL------KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC------CCHHHHHHHHHHHHHHCCSC
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHhcCCC
Confidence 34557888888887 55667778 59999999999997743 2334555556666554 7
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHH--------HHHHHHHHHHhHhhccCCchHHHHHHHHH
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQE--------KAVEHYEQAATYFKGEESNSSANKCLLKV 160 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~--------~Ai~~y~kA~~~~~~~~~~~~a~~~~~~l 160 (320)
+++++.++.++++..+++-. +|...+.++... |.++ +++++++++++..+.+ ..++...
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~------AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~~R 207 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYH------TWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGRN------NSAWGWR 207 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHH------HHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 89999999999998887755 788888888875 7777 9999999999987775 4688888
Q ss_pred HHHHHHccC-------HHHHHHHHHHHHHhhhhhhh
Q psy9376 161 AHHAALLQN-------YNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 161 a~~~~~~g~-------y~~Ai~~y~~~~~~~~~~~~ 189 (320)
+.++..+++ +++++++++++....+++..
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 989888886 79999999999988777653
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.18 E-value=1.8e-05 Score=72.04 Aligned_cols=149 Identities=9% Similarity=-0.031 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKM--AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-----DNEAAIDCLSKAI 100 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~--~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-----~~~eA~~~~~kA~ 100 (320)
|.-.+|.++|-++-..+.. ..++.+|+.+|++|+++. |. -+.++..++.+|... .....+.-..++.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-----P~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-----PE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 5556888998887443332 345689999999999994 32 334455555555421 1122223333344
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 101 VIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 101 ~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
............+.++.-+|..+-.. |++++|+..+++|+.+-+. ...+..+|.++...|++++|++.|+++
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~-gd~d~A~~~l~rAl~Ln~s-------~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVK-GKTDESYQAINTGIDLEMS-------WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 32222222344566788888777766 9999999999999999532 346788999999999999999999999
Q ss_pred HHhhhhhhhh
Q psy9376 181 GRTSLDSSLL 190 (320)
Q Consensus 181 ~~~~~~~~~~ 190 (320)
.+..|..+..
T Consensus 337 lrL~P~~~t~ 346 (372)
T 3ly7_A 337 FNLRPGANTL 346 (372)
T ss_dssp HHHSCSHHHH
T ss_pred HhcCCCcChH
Confidence 9988876654
No 205
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.17 E-value=3.9e-05 Score=68.38 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh-----hhhh
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL-----DSSL 189 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~-----~~~~ 189 (320)
.+.-+|.++... |++++|+.++.+.+..-+. ....+++..++.++...|+.+.|.+.++++....+ +..+
T Consensus 102 ~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 102 ELYLLATAQAIL-GDLDKSLETCVEGIDNDEA----EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHhccCCC----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 456899999997 9999999999998765431 23577889999999999999999999999877665 2222
Q ss_pred hhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch-----
Q psy9376 190 LKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL----- 264 (320)
Q Consensus 190 ~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l----- 264 (320)
.. .+.-+.+.+..+.++.++|+..|+++...||+.....++.+.. + ..+++++|-..++.+.++
T Consensus 177 l~------~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~--~---~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 177 IL------NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLH--L---QQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HH------HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHH--H---HHTCHHHHHHHHHHHHSHHHHTT
T ss_pred HH------HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHH--H---HcCCHHHHHHHHHHHHHhccccc
Confidence 11 1111222333444578899999999989998722222332221 2 378999999999988887
Q ss_pred -----hhhHHHHHH
Q psy9376 265 -----DQWYTTVLL 273 (320)
Q Consensus 265 -----d~~~~~~l~ 273 (320)
||.++..|.
T Consensus 246 ~k~~~~p~~~~~La 259 (310)
T 3mv2_B 246 QKENAVLYKPTFLA 259 (310)
T ss_dssp TCHHHHSSHHHHHH
T ss_pred ccccCCCCCHHHHH
Confidence 578888883
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.07 E-value=5.5e-06 Score=59.99 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=63.5
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHH
Q psy9376 80 AANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAK-HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCL 157 (320)
Q Consensus 80 aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~-~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~ 157 (320)
.|.++... ++++|+.++++++++.+.. .. ++..+|.+|... |++++|+.+|++++.+.+.... ++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~------~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPA------LQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTH------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHH------HH
Confidence 34555444 8889999999998876543 23 788999999997 9999999999999998776431 22
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
.. +.+.+|+..|+++....+++
T Consensus 73 ~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 73 AR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred HH--------HHHHHHHHHHHHHhccCccc
Confidence 11 66778888888877665543
No 207
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.04 E-value=0.00047 Score=61.43 Aligned_cols=207 Identities=10% Similarity=-0.039 Sum_probs=137.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT---DNEAAIDCLSKAIVIY 103 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~---~~~eA~~~~~kA~~l~ 103 (320)
+++|.++...+... .......++|+.++.+++.+. |. ...++..-+.++... ++++++.++.+++.+.
T Consensus 29 ~~~y~~~~~~~~a~---~~~~e~s~~aL~~t~~~L~~n-----P~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n 99 (306)
T 3dra_A 29 DEDYKQIMGLLLAL---MKAEEYSERALHITELGINEL-----AS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN 99 (306)
T ss_dssp CHHHHHHHHHHHHH---HHTTCCSHHHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHC-----cH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC
Confidence 45666666665432 333344479999999999994 32 344566666776553 7999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHH----Hhcc---CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH--HHH
Q psy9376 104 TDMGRFTMAAKHHQTIAEIY----ETDC---VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN--KAI 174 (320)
Q Consensus 104 ~~~~~~~~aa~~~~~la~~y----~~~l---~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~--~Ai 174 (320)
|++-. +|..-+.++ .. + ++++++++++.++++..+.. ..++..-+.++..+|.++ +++
T Consensus 100 Pk~y~------aW~~R~~iL~~~~~~-l~~~~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 100 EKNYQ------IWNYRQLIIGQIMEL-NNNDFDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp TTCCH------HHHHHHHHHHHHHHH-TTTCCCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTCHHHH
T ss_pred cccHH------HHHHHHHHHHHHHHh-ccccCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcccChHHHH
Confidence 98876 788888887 44 3 68999999999999988875 568888999999999998 999
Q ss_pred HHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh--hhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHH
Q psy9376 175 QIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI--DVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGF 251 (320)
Q Consensus 175 ~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~ 251 (320)
+++++++...+.+.. .|..++..+ ..+.. +....+++++.+.++....|.......- ..++.... ...
T Consensus 167 ~~~~~~i~~d~~N~s-AW~~R~~ll----~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~----~~~ 237 (306)
T 3dra_A 167 SFVDKVIDTDLKNNS-AWSHRFFLL----FSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD----RSI 237 (306)
T ss_dssp HHHHHHHHHCTTCHH-HHHHHHHHH----HSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT----CCG
T ss_pred HHHHHHHHhCCCCHH-HHHHHHHHH----HhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC----CCh
Confidence 999999987665432 233332211 11100 1123677787777666655655544432 44443221 123
Q ss_pred HHHHHHHhhhcch
Q psy9376 252 TEAVKDYDSISRL 264 (320)
Q Consensus 252 ~~Ai~~ye~~~~l 264 (320)
++.....+++..+
T Consensus 238 ~~~~~~~~~~~~~ 250 (306)
T 3dra_A 238 TQLEEFSLQFVDL 250 (306)
T ss_dssp GGGHHHHHTTEEG
T ss_pred HHHHHHHHHHHhc
Confidence 3344455565553
No 208
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.00 E-value=0.00031 Score=62.54 Aligned_cols=196 Identities=13% Similarity=0.009 Sum_probs=117.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQ 117 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~ 117 (320)
-+|.++...|++++|+..+.+.+... ......+++..++.++... +++.|...+++.....++.-+.+.. .+.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~----~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~--~l~ 178 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDND----EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE--MIL 178 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSS----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH--HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccC----CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH--HHH
Confidence 67899999999999999999875431 1124567788888998888 9999999999987765520011122 234
Q ss_pred HHHHH--HHhc-cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh--h-hhh
Q psy9376 118 TIAEI--YETD-CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS--S-LLK 191 (320)
Q Consensus 118 ~la~~--y~~~-l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~--~-~~~ 191 (320)
.++.. .... -+++.+|...|+++.+.++.. . ....+.+ ++..+|++++|.+.++.+....++- . ...
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~---~-~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTW---K-TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH---H-HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc---c-cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44332 2222 048999999999998877641 1 1223333 8999999999999999877653220 0 000
Q ss_pred cchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy9376 192 YSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYD 259 (320)
Q Consensus 192 ~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye 259 (320)
......+.+++.+.+..+. .+.+-++...+..|.+|-..++.- ....|++++..|.
T Consensus 252 p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~d~~~-----------k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIKHHQE-----------IDAKFDELVRKYD 307 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHHHHHH-----------HHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHHHHHH-----------HHHHHHHHHHHhc
Confidence 0011223244434333322 445555555555555543322221 1356777776663
No 209
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=98.00 E-value=0.0055 Score=54.42 Aligned_cols=225 Identities=12% Similarity=0.091 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA~~~~~kA~~l~~ 104 (320)
.|+|=+|...|.-..+.|...++|++|++.....+...-+.+....+++.-..+..+|.+. .++ .+...+.++++.
T Consensus 26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~--~~~~~rl~~l~~ 103 (312)
T 2wpv_A 26 AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD--DISVARLVRLIA 103 (312)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS--HHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Confidence 4677777777777777777777777777777776666666666665555555555666665 111 123333333332
Q ss_pred HcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH----
Q psy9376 105 DMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV---- 180 (320)
Q Consensus 105 ~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~---- 180 (320)
.....+.. ... =..+|+.|-.+.-.. ..| -.+....+|..|.+.|++.+|..+|-..
T Consensus 104 ~~p~~~~~----------r~~---fi~~ai~WS~~~g~~--~~G----dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s 164 (312)
T 2wpv_A 104 ELDPSEPN----------LKD---VITGMNNWSIKFSEY--KFG----DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDS 164 (312)
T ss_dssp TCCTTCTT----------HHH---HHHHHHHHHHHTSSC--TTC----CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHH
T ss_pred HCCCCCch----------HHH---HHHHHHHHHhhcCCC--CCC----CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCcc
Confidence 22110000 000 023333333222110 111 1234455566666666666655554210
Q ss_pred H--------Hhhh----hhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhC------------------CCccC
Q psy9376 181 G--------RTSL----DSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIY------------------PAFQD 229 (320)
Q Consensus 181 ~--------~~~~----~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~------------------~~f~~ 229 (320)
. .+.. +.+. ..--+..++++.+|+. ....+..+++.|.+.. +.||.
T Consensus 165 ~~~~a~~l~~w~~~~~~~~~~---e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~ 241 (312)
T 2wpv_A 165 MIKYVDLLWDWLCQVDDIEDS---TVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFED 241 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCCHH---HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCC
Confidence 0 0100 0000 0112345777888876 6788888888886432 12455
Q ss_pred cHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHh
Q psy9376 230 SREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQ 278 (320)
Q Consensus 230 s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~ 278 (320)
..--.++.-|+.+++.++..-|..-.+.|...++ . -...|.+|.+.
T Consensus 242 ~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~--~-~~~~L~~Ig~~ 287 (312)
T 2wpv_A 242 YSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ--A-YKSELEFLGQE 287 (312)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH--H-THHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--H-HHHHHHHHHHH
Confidence 6667777777778888888889999999998876 2 35566677766
No 210
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.95 E-value=0.011 Score=54.25 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Q psy9376 48 KKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126 (320)
Q Consensus 48 g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~ 126 (320)
+..+.-++....+++-...-+..+--...=..+|..|... ++.+|.+.+.+...-.....+....-.++..-..+|...
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~ 152 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 152 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence 4455556666666655544433332222333667777777 999999999999988877777777778888888899997
Q ss_pred cCCHHHHHHHHHHHHhHhhcc-CCchHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHH
Q psy9376 127 CVDQEKAVEHYEQAATYFKGE-ESNSSANKCLLKVAHHAA-LLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALC 204 (320)
Q Consensus 127 l~~~~~Ai~~y~kA~~~~~~~-~~~~~a~~~~~~la~~~~-~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (320)
+++.++...|.+|....... ..|...+.....-|-++. ..++|.+|...|-++.......... .......-.++|
T Consensus 153 -~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~--~~~~~lkYlvL~ 229 (394)
T 3txn_A 153 -SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSV--KALTSLKYMLLC 229 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccH--HHHHHHHHHHHH
Confidence 99999999999998876554 556667777777788888 8999999999998886543211110 011111224566
Q ss_pred HHhh-hhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHH
Q psy9376 205 HLCI-DVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIK 276 (320)
Q Consensus 205 ~l~~-d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~ 276 (320)
.+.. +..+...-+. ......| .+++...+..++.++..++...|.+.+..|......||....-+..+.
T Consensus 230 aLl~~~r~el~~~l~--~~~~~~~-~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~ 299 (394)
T 3txn_A 230 KIMLGQSDDVNQLVS--GKLAITY-SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLY 299 (394)
T ss_dssp HHHTTCGGGHHHHHH--SHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHhc--ccccccc-CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 6553 2222221111 0111123 456777788899999999999999999999988888998654443333
No 211
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.91 E-value=0.00021 Score=64.76 Aligned_cols=181 Identities=6% Similarity=-0.067 Sum_probs=124.5
Q ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHhHhhccCCchHHHHHHHH
Q psy9376 82 NCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCV-DQEKAVEHYEQAATYFKGEESNSSANKCLLK 159 (320)
Q Consensus 82 ~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~-~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~ 159 (320)
.+.... ..++|+.++.+++.+.|++-. +|..-+.++... | .+++++.++.+++...++. ..++..
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~yt------aWn~R~~iL~~l-~~~l~eEL~~~~~~L~~nPKn------y~aW~h 128 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYT------VWQYRFSLLTSL-NKSLEDELRLMNEFAVQNLKS------YQVWHH 128 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTTCCC------HHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHH------HHHHHHHHHHHh-hhhHHHHHHHHHHHHHhCCCc------HHHHHH
Confidence 333444 567899999999999887755 799999999986 8 5999999999999988875 568888
Q ss_pred HHHHHHHc-c-CHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhh----hhHHHHHHHHHHHHhCCCccCcHHH
Q psy9376 160 VAHHAALL-Q-NYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCI----DVINAHNAIDRYKTIYPAFQDSREY 233 (320)
Q Consensus 160 la~~~~~~-g-~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----d~~~~~~A~~~y~~~~~~f~~s~e~ 233 (320)
-+.++..+ + +++++++++++++...+.+.. .|..+...+ .++.. +.....++++.+.++....+.+...
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~-AW~~R~wvl----~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA 203 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH-TWAYLHWLY----SHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA 203 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH-HHHHHHHHH----HHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHH----HHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence 88888887 7 899999999999987665443 244333321 11111 1222346777776665555554444
Q ss_pred HHH-HHHHHHHHh--cCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhc
Q psy9376 234 KLL-RILIEHIEE--QNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVG 280 (320)
Q Consensus 234 ~~l-~~l~~a~~~--~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~ 280 (320)
..- .-++..+.. .+...++++++.+++.+.++|-+...+.-.+-.+.
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 332 222211110 12345899999999999999988888866555554
No 212
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.62 E-value=0.0028 Score=50.66 Aligned_cols=104 Identities=15% Similarity=0.037 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch--
Q psy9376 77 LLDAANCFKKTDNEAAIDCLSKAIVIYTDMGR---FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS-- 151 (320)
Q Consensus 77 ~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~~~---~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~-- 151 (320)
+.++-..+....|+.|+.....++.+...+.+ +...+.++..+|..+... ++|.+|...|++|+.+.+...+..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~-~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD-KEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33444445555899999999999999866554 788899999999999998 999999999999998877532221
Q ss_pred -----------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 152 -----------------SANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 152 -----------------~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
...++..+++.|+.++|++++|+...+.+-
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 123688999999999999999999988653
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.55 E-value=0.00072 Score=49.75 Aligned_cols=70 Identities=7% Similarity=-0.102 Sum_probs=56.9
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 77 LLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGR-FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 77 ~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~-~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
...+|..+... ++..|+..|++|+...+.... ....+.++..+|.+|... |++++|+.++++++.+-|..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCC
Confidence 34566766665 999999999999998865432 234567899999999997 99999999999999987775
No 214
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.33 E-value=0.042 Score=50.42 Aligned_cols=185 Identities=11% Similarity=0.083 Sum_probs=132.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q psy9376 39 RAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT--DNEAAIDCLSKAIVIYTDMGRFTMAAKHH 116 (320)
Q Consensus 39 ~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~--~~~eA~~~~~kA~~l~~~~~~~~~aa~~~ 116 (320)
+.|.+|...|++++-.++............. ..++..-.++-..+... ..+.-++....+++-........---..-
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISK-AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488999999999988888777666544433 34666666666777665 56667788888888777776644333344
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh--h-hhhhhhcc
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS--L-DSSLLKYS 193 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~--~-~~~~~~~~ 193 (320)
.++|..|... |+|.+|...+.+...-.+..++.....+++..-..+|..+|++.++-.+|.++.... + .+|..+
T Consensus 103 ~kL~~l~~~~-~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-- 179 (394)
T 3txn_A 103 ARLIALYFDT-ALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-- 179 (394)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH--
T ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH--
Confidence 5899999998 999999999999999888877788889999999999999999999999999986542 1 122221
Q ss_pred hhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccC
Q psy9376 194 AKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQD 229 (320)
Q Consensus 194 ~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~ 229 (320)
+ ..-...|+.+++ ...++..|...|-+.+..|.+
T Consensus 180 a-~i~~~~Gi~~l~-~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 180 G-ALDLQSGILHAA-DERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp H-HHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHTT
T ss_pred H-HHHHHhhHHHHH-hccCHHHHHHHHHHHHhcccc
Confidence 1 111223444441 346667777777666666654
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.30 E-value=0.011 Score=58.31 Aligned_cols=207 Identities=8% Similarity=-0.091 Sum_probs=131.6
Q ss_pred HHHHHHcCCHHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--------CC--
Q psy9376 41 ANMFKMAKKWNNAG-KAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM--------GR-- 108 (320)
Q Consensus 41 g~~~~~~g~~~~A~-~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~--------~~-- 108 (320)
+......|+.++|. ..|++|....+ . ....+...+...... ++++|...|++++...+.. ..
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~P-----~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCIP-----N-SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHCT-----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 44455667888887 99999986532 1 233455555666665 8999999999999875311 10
Q ss_pred ------hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHH
Q psy9376 109 ------FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQ-NYNKAIQIYEEVG 181 (320)
Q Consensus 109 ------~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g-~y~~Ai~~y~~~~ 181 (320)
....+.+|...+...... |+.+.|...|.+|+...+... ...+...+.+-...| +++.|..+|+++.
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRI-QGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred hhhhhhccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 113456788888888886 999999999999998632221 245666677666655 5999999999999
Q ss_pred HhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHH-HHHHHHHHHHHhcCHhHHHHHHHHHhh
Q psy9376 182 RTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREY-KLLRILIEHIEEQNVDGFTEAVKDYDS 260 (320)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~-~~l~~l~~a~~~~d~~~~~~Ai~~ye~ 260 (320)
..++..+.. +..-+... ...++.++|-.-|+.+....++.... .+...++. ++. ..|..+.+.+++++
T Consensus 498 k~~p~~~~~-------w~~y~~fe--~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~-fE~-~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 498 KYFATDGEY-------INKYLDFL--IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF-FES-KVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHTTCHHH-------HHHHHHHH--HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH-HHH-HTCCSHHHHHHHHH
T ss_pred HHCCCchHH-------HHHHHHHH--HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHH-HcCCHHHHHHHHHH
Confidence 887765432 21111111 13345556666666666665532222 23344332 432 34667778888888
Q ss_pred hcchhhhHHH
Q psy9376 261 ISRLDQWYTT 270 (320)
Q Consensus 261 ~~~ld~~~~~ 270 (320)
+.+..|-...
T Consensus 567 ~~~~~P~~~~ 576 (679)
T 4e6h_A 567 FFEKFPEVNK 576 (679)
T ss_dssp HHHHSTTCCH
T ss_pred HHHhCCCCcH
Confidence 8876655433
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.29 E-value=0.0046 Score=61.04 Aligned_cols=191 Identities=11% Similarity=0.037 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccC
Q psy9376 51 NNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAI-DCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCV 128 (320)
Q Consensus 51 ~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~-~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~ 128 (320)
......|++|+...+. ....|...+...... +.++|+ ..|++|+...|... ..+...+...+.. |
T Consensus 326 ~Rv~~~Ye~aL~~~p~------~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~------~Lwl~~a~~ee~~-~ 392 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF------APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA------VLAFSLSEQYELN-T 392 (679)
T ss_dssp HHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHcCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHh-C
Confidence 4456788888887532 345677776666554 667897 99999998776432 3678889999987 9
Q ss_pred CHHHHHHHHHHHHhHhhcc--------CC--------chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhc
Q psy9376 129 DQEKAVEHYEQAATYFKGE--------ES--------NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKY 192 (320)
Q Consensus 129 ~~~~Ai~~y~kA~~~~~~~--------~~--------~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~ 192 (320)
++++|...|++++...+.. .. ......++...+.+..+.|+.+.|..+|.++....+....
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--- 469 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP--- 469 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT---
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh---
Confidence 9999999999999875311 10 0123457888888888999999999999999765111110
Q ss_pred chhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHH-HHHHHHHHhcCHhHHHHHHHHHhhhcchhh
Q psy9376 193 SAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLL-RILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266 (320)
Q Consensus 193 ~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l-~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~ 266 (320)
..|...+.... .-.++.+.|..-|+.....|+.+....+. .++.. ..++.+.|-.+|++++...|
T Consensus 470 ---~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~-----~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 470 ---DIYLENAYIEY-HISKDTKTACKVLELGLKYFATDGEYINKYLDFLI-----YVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp ---HHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHTCHHHHHHHHHHHTTTSS
T ss_pred ---HHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHhcC
Confidence 11111111111 11122455555555555567877776533 33221 25788999999999998777
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.16 E-value=0.0021 Score=46.45 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhccCC---HHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhh
Q psy9376 113 AKHHQTIAEIYETDCVD---QEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~---~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~ 186 (320)
+..+..+|.++... ++ .++|..++++|+.+-+.. ..++..+|.++...|+|++|+.+|+++....+.
T Consensus 6 ~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34677778776543 34 699999999999998875 578899999999999999999999999987555
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.01 E-value=0.012 Score=53.35 Aligned_cols=91 Identities=9% Similarity=-0.080 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--cC-CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD--CV-DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~--l~-~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
+..+|+.+|++|+++.|+... ++..++.+|... .+ .....+....++.............+.++.-++.++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~------A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~ 287 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTY------ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA 287 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHH
Confidence 468899999999999998755 344444433210 01 111222333333332211111122355777788888
Q ss_pred HHccCHHHHHHHHHHHHHhh
Q psy9376 165 ALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 165 ~~~g~y~~Ai~~y~~~~~~~ 184 (320)
...|++++|+..++++....
T Consensus 288 l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 288 LVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HHHTCHHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHhcC
Confidence 88899999999999998754
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.00 E-value=0.0013 Score=57.75 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD----CVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~----l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
..+|...+++|+++.|... -+.+|.-+|.+|... .|+.++|..+|++|+++.+... ..++.-.|+.+
T Consensus 179 l~~A~a~lerAleLDP~~~----~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~l 249 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQ----EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHH----HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcc----cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHHH
Confidence 5789999999999988632 233899999999982 2999999999999999988532 46778889998
Q ss_pred HH-ccCHHHHHHHHHHHHHhhhh
Q psy9376 165 AL-LQNYNKAIQIYEEVGRTSLD 186 (320)
Q Consensus 165 ~~-~g~y~~Ai~~y~~~~~~~~~ 186 (320)
.. .|++++|..+++++....+.
T Consensus 250 ~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHhcCCHHHHHHHHHHHHcCCCC
Confidence 87 49999999999999976554
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.99 E-value=0.0029 Score=45.64 Aligned_cols=65 Identities=11% Similarity=-0.043 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 75 CNLLDAANCFKKT----DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 75 ~~~~~aa~~y~~~----~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
..+...|.++... ..++|...+++|+.+.|++.. ++..+|.++... |+|++|+.+|+++++..+.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r------A~~~lg~~~~~~-g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA------ALSLIANDHFIS-FRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT-TCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Confidence 4455556665433 379999999999999998766 899999999998 9999999999999998877
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.96 E-value=0.011 Score=46.74 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhccC---CHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 113 AKHHQTIAEIYETDCV---DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 113 a~~~~~la~~y~~~l~---~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
..+.++.|.++... + +.+++|.++++.++.- .+....+++..+|..+.++|+|++|.++++++....|++..
T Consensus 32 ~~~~F~ya~~Lv~S-~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 32 KSTQFEYAWCLVRS-KYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 35788999988886 7 5669999999988854 23345789999999999999999999999999999887654
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.043 Score=43.74 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=83.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh--------
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGT---KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRF-------- 109 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~---~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~-------- 109 (320)
...-..|.|+.|+-....++.+.....+ +...+.++...|.++... +|..|...|++|+.+.....+.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~ 107 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG 107 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 3344579999999999999888765443 667788888888888777 9999999999999887633211
Q ss_pred -----------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHH
Q psy9376 110 -----------TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA 164 (320)
Q Consensus 110 -----------~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~ 164 (320)
.....+.++++.||.+. +++++|+..++..-. +.....+-..||.+|
T Consensus 108 ~~ss~p~s~~~~~e~Elkykia~C~~~l-~~~~~Ai~~Le~Ip~-------k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 108 NSASTPQSQCLPSEIEVKYKLAECYTVL-KQDKDAIAILDGIPS-------RQRTPKINMLLANLY 165 (167)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHT-TCHHHHHHHHHTSCG-------GGCCHHHHHHHHHHC
T ss_pred ccCCCcccccccchHHHHHHHHHHHHHH-CCHHHHHHHHhcCCc-------hhcCHHHHHHHHHHh
Confidence 11236789999999996 999999998753222 222245556666665
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.45 E-value=0.081 Score=50.16 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=98.2
Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHH--------HH-------HHc---------CCHHHHHHHHHHHHHHHHHcCChHH
Q psy9376 17 LRVVFITKVGGNKIDEAIECYTRAAN--------MF-------KMA---------KKWNNAGKAFVEAANLHMKSGTKHD 72 (320)
Q Consensus 17 ~~~~~~~~~~~~~~~~A~~~y~~ag~--------~~-------~~~---------g~~~~A~~~y~kA~~~~~~~~~~~~ 72 (320)
++..+..+-+.|+.++|.++|++.-. .| ... ++.+.|.+.|.+... .|-.+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~----~G~~P- 103 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV----DKVVP- 103 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----TTCCC-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----hCCCC-
Confidence 34444444457899999998877521 11 111 224556666555432 22221
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
....|..+...|.+. ++++|.+.+++... .|-... ..+|..+=..|-+. |+.++|.++|++..+.--. +
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~---P- 173 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRK-GDADKAYEVDAHMVESEVV---P- 173 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCC---C-
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHC-CCHHHHHHHHHHHHhcCCC---C-
Confidence 234566666666666 88999988887542 332111 23566666777787 9999999999988753111 1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
-..+|..+...+.+.|+.++|.++++++-....
T Consensus 174 -d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 174 -EEPELAALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred -CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 145788999999999999999999999876543
No 224
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.29 Score=45.63 Aligned_cols=113 Identities=9% Similarity=-0.041 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH-HHHcCChHHHHH
Q psy9376 37 YTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVI-YTDMGRFTMAAK 114 (320)
Q Consensus 37 y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l-~~~~~~~~~aa~ 114 (320)
-...+.++...|++.+|.+.......-....-+...-.+.+..-..+|... ++..|...+.++... +.....+...+.
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 344578888889999999988876532222334444455555555555555 899998888888653 444455677788
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCc
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESN 150 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~ 150 (320)
++.-.|.++... ++|.+|..+|..+.+.+...+++
T Consensus 220 ~~~~~~~~~~~e-~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 220 YYNLLVKISLHK-REYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHhcccccCCH
Confidence 888888888887 88988888888888776555443
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.20 E-value=0.11 Score=49.29 Aligned_cols=136 Identities=10% Similarity=-0.016 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHH
Q psy9376 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT----------DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 36 ~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~----------~~~eA~~~~~kA~~l~~~ 105 (320)
.+...-..+...|+.++|.+.|.++.+- |-.. ....|..+-.++... +.++|.+.|++.. .
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~----Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~----~ 98 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN----GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI----V 98 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH----TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH----H
Confidence 3455567788899999999999998754 2211 234566665666543 2456666665432 2
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 106 ~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
.|-... ..+|..+-..|-+. |++++|.++|++....--. + ...+|..+...|.+.|+.++|.++|+++...+.
T Consensus 99 ~G~~Pd-~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~g~~---P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 99 DKVVPN-EATFTNGARLAVAK-DDPEMAFDMVKQMKAFGIQ---P--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp TTCCCC-HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCC---C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC---C--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 332211 12577777888887 9999999999987653111 1 145788899999999999999999999987654
Q ss_pred hh
Q psy9376 186 DS 187 (320)
Q Consensus 186 ~~ 187 (320)
..
T Consensus 172 ~P 173 (501)
T 4g26_A 172 VP 173 (501)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.10 E-value=0.034 Score=48.65 Aligned_cols=90 Identities=12% Similarity=0.018 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy9376 49 KWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT------DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEI 122 (320)
Q Consensus 49 ~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~------~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~ 122 (320)
....|....++|+++.+ ....+.+|.-+|..|... ++++|..+|++|+++.|..+- ..+.-.|..
T Consensus 178 ~l~~A~a~lerAleLDP----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i-----d~~v~YA~~ 248 (301)
T 3u64_A 178 TVHAAVMMLERACDLWP----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP-----DHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc-----hHHHHHHHH
Confidence 35788889999999842 234677899999999883 899999999999999985422 267888887
Q ss_pred HHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 123 YETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 123 y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
+-...|++++|..++++|+..-+..
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 7552289999999999999987774
No 227
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.068 Score=49.66 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS 151 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~ 151 (320)
...++..+|..|.+. ++++|.++|.++.......+. ....+..+-.++... +++..+..++.++-.+....+++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~-~d~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFY-NDQLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhcCCCHH
Confidence 344566677777766 899999999998776655444 334566666666665 899999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy9376 152 SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184 (320)
Q Consensus 152 ~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~ 184 (320)
........-|.++...++|.+|...|-++....
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 777777777777888899999999999886543
No 228
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=96.02 E-value=0.74 Score=40.67 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 68 GTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 68 ~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
|+.-++...|..+..=|.+. ++++|++.+......+.+.|....+++.-.-+-.+|.+. +.. -..+...+.++++..
T Consensus 27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~-~~~-~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA-EVK-VDDISVARLVRLIAE 104 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCC-CSHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHH
Confidence 33444444555555555555 788888888777777778888877777766677777774 322 123344555555544
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.85 E-value=0.47 Score=46.82 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKA 99 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA 99 (320)
..|.++|..+.+. +++.|.+||.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4677777777776 778788777765
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.55 Score=43.71 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 112 aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
-++....++.+|+.. |++.+|...+.....=-....+.....+++.....++...+++.+|-..++++..
T Consensus 136 rarl~~~La~i~e~~-g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 136 RARVTKDLVEIKKEE-GKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788999999998 9999999999886533233345566788999999999999999999999999854
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.82 E-value=0.37 Score=47.59 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHh------HhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAAT------YFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~------~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
..|.++|..+... ++++.|+.+|.++-+ ++...++ .+-+..++.+....|+++.|..+|.+.+
T Consensus 682 ~~W~~la~~al~~-~~~~~A~~~y~~~~d~~~l~~l~~~~~~----~~~~~~~~~~a~~~~~~~~A~~~~~~~g 750 (814)
T 3mkq_A 682 MKWRALGDASLQR-FNFKLAIEAFTNAHDLESLFLLHSSFNN----KEGLVTLAKDAETTGKFNLAFNAYWIAG 750 (814)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHc-CCHHHHHHHHHHccChhhhHHHHHHcCC----HHHHHHHHHHHHHcCchHHHHHHHHHcC
Confidence 4799999999998 999999999987633 2333332 2344566667667777777776666554
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.29 E-value=0.31 Score=36.96 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhccCCHHH---HHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 114 KHHQTIAEIYETDCVDQEK---AVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~---Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
.+.++.|.++... .+... +|.+++..+.- +.+....+++..+|-.+.++|+|++|..+.+.++...|++..
T Consensus 36 ~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 36 STQFEYAWCLVRT-RYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 4678888888776 66665 88888776553 234456789999999999999999999999999998887654
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.19 E-value=0.34 Score=38.02 Aligned_cols=70 Identities=13% Similarity=-0.032 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 73 AACNLLDAANCFKKT----DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 73 aa~~~~~aa~~y~~~----~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
..++..+.|.++... +.++++..++..+... .+..-..+++++|..|-+. |+|++|..++++++++-|+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl-~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRL-KEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCC
Confidence 346677778888876 4568999999887754 3345556899999999986 99999999999999998864
No 234
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.26 Score=46.61 Aligned_cols=185 Identities=12% Similarity=0.139 Sum_probs=113.5
Q ss_pred CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc-CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE-ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSL 185 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~-~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~ 185 (320)
.+....+..+.-+=..|-.. +.|++|..+..++. ||.. .+..+....+.-+|.++.-.++|.+|.+++..+.+.++
T Consensus 225 ~D~~~qa~l~nllLRnYL~~-~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNN-GEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHS-SCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHcc-CcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 45667788888888889987 99999999998885 6654 34456678889999999999999999999999998776
Q ss_pred hhhhh-hcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcch
Q psy9376 186 DSSLL-KYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL 264 (320)
Q Consensus 186 ~~~~~-~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~l 264 (320)
..... .+- ....-.+..|.|-.+ +... . ..+..+.-.....--..|..|+..||...|..+++.++..-.-
T Consensus 302 ~~~~a~gfr-~~a~K~lI~V~LLlG--~iP~-r----~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~ 373 (523)
T 4b4t_S 302 HNSKSLGFL-QQSNKLHCCIQLLMG--DIPE-L----SFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLK 373 (523)
T ss_dssp CSSSCSHHH-HHHHHHHHHHHHHHT--CCCC-H----HHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred cchhhhhHH-HHHHHHHHhHHhhcC--CCCC-h----HHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceecc
Confidence 54321 000 000001233333221 0000 0 0001111111111124577788899999999999999987765
Q ss_pred hhhHHHHHHHHHHhhcC---CCCCchhhhchhHHHhHHHHHH
Q psy9376 265 DQWYTTVLLRIKKQVGR---TSLDSSLLKYSAKEYFFRAALC 303 (320)
Q Consensus 265 d~~~~~~l~~i~~~~~~---~~~~~~l~~~~~~~y~~~a~~c 303 (320)
|-.. .++.+++..+-. ....-++.+.|+.|.-.+-++.
T Consensus 374 Dgty-~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~ 414 (523)
T 4b4t_S 374 DDTY-QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLD 414 (523)
T ss_dssp TTCT-HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHH
T ss_pred CChh-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCC
Confidence 5332 233332222211 2344466788888876665543
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.03 E-value=0.83 Score=40.69 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=92.8
Q ss_pred HhhhhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC--HHHH
Q psy9376 15 ALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTD--NEAA 92 (320)
Q Consensus 15 k~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~--~~eA 92 (320)
-+.||..+...++++|++|+++....+..+...|++..|.+.-.-.++++.+.+-+... .....+..++.... ..+=
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~L~~~~~~~~p~r 114 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLGCLRLFQPGEPVR 114 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTSCTTCHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCCCcHH
Confidence 45677777777789999999999999999999999999999999999999877644322 46667777777762 2234
Q ss_pred HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy9376 93 IDCLSKAIVIYTDMGR-FTMAAKHHQTIAEIYETDCVDQEKAVEHY 137 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~-~~~aa~~~~~la~~y~~~l~~~~~Ai~~y 137 (320)
..+..+|+.-..+.|. +.+-...+.-+|..|-+. +++.+|..+|
T Consensus 115 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e-~~~~~Ae~H~ 159 (336)
T 3lpz_A 115 KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE-GEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHH
Confidence 5677777777766542 344456788999999998 9998888877
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.49 Score=43.78 Aligned_cols=104 Identities=12% Similarity=0.036 Sum_probs=81.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy9376 41 ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK-TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119 (320)
Q Consensus 41 g~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~-~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~l 119 (320)
|..|...||+++|.++|.++..-....+. -...+.....++.. .++..+..+..++..+....+++...++...-.
T Consensus 138 a~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 138 GEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 78888899999999999998775443333 23344444444444 499999999999999998889988888888888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhHhhccC
Q psy9376 120 AEIYETDCVDQEKAVEHYEQAATYFKGEE 148 (320)
Q Consensus 120 a~~y~~~l~~~~~Ai~~y~kA~~~~~~~~ 148 (320)
|.++... ++|.+|..+|..+..-+...+
T Consensus 215 gl~~l~~-r~f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 215 GIHCLAV-RNFKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp HHGGGGT-SCHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHh-ChHHHHHHHHHHHhccCCccc
Confidence 8888886 999999999999887765543
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.67 E-value=2.4 Score=33.15 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHc
Q psy9376 90 EAAIDCLSKAIVIYTD--MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALL 167 (320)
Q Consensus 90 ~eA~~~~~kA~~l~~~--~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~ 167 (320)
++-++.|++|+.-.|- ......=+..|.+-|.. ... ++.++|.+.|+.++.+ .... +.++...|..-.++
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei-~D~d~aR~vy~~a~~~---hKkF---AKiwi~~AqFEiRq 107 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI-QEPDDARDYFQMARAN---CKKF---AFVHISFAQFELSQ 107 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH-HCGGGCHHHHHHHHHH---CTTB---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh-cCHHHHHHHHHHHHHH---hHHH---HHHHHHHHHHHHHc
Confidence 6677888888887653 34445666778888865 553 8999999999999997 2222 88999999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhh
Q psy9376 168 QNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 168 g~y~~Ai~~y~~~~~~~~~~ 187 (320)
|+.++|.+++.++...++..
T Consensus 108 gnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 108 GNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TCHHHHHHHHHHHHHTTCBC
T ss_pred ccHHHHHHHHHHHhccCCCc
Confidence 99999999999998766543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.35 E-value=3.6 Score=40.83 Aligned_cols=121 Identities=9% Similarity=0.001 Sum_probs=76.9
Q ss_pred cCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHHhcC--CHHHHHHHHHHHHHHHH----HcC--Ch------H
Q psy9376 47 AKK-WNNAGKAFVEAANLHMKSGTKHDAACNLLDA-ANCFKKT--DNEAAIDCLSKAIVIYT----DMG--RF------T 110 (320)
Q Consensus 47 ~g~-~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~a-a~~y~~~--~~~eA~~~~~kA~~l~~----~~~--~~------~ 110 (320)
.++ ++.|++.+++...- ++... ..+..+ ..+.... +--+|+....++++-.. +.. +. .
T Consensus 261 t~~~~~~a~~~le~L~~~-----~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK-----DPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH-----CGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhh-----CCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 444 57788777775543 23211 112111 1222222 34568888877775321 111 10 1
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
..+..+..-+..+... |+++-|+++-++|+.+.|.+ -.+|..|+.+|..+|+|+.|+-.++..
T Consensus 335 ~~~~LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~aPse------F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNR-GDYELALGVSNTSTELALDS------FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcCchh------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1223455556666676 99999999999999999885 679999999999999999998766644
No 239
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.35 E-value=1.6 Score=41.09 Aligned_cols=152 Identities=9% Similarity=-0.055 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCch------------------
Q psy9376 90 EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNS------------------ 151 (320)
Q Consensus 90 ~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~------------------ 151 (320)
+.....|++|+...|.. ...|...+..+... |+.++|...|++|+.. |....-.
T Consensus 196 ~Rv~~~ye~al~~~p~~------~~lW~~ya~~~~~~-~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYA------EEVYFFYSEYLIGI-GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHH
Confidence 34667899988877644 45899999998887 9999999999999988 6542100
Q ss_pred ----------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHH
Q psy9376 152 ----------------SANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHN 215 (320)
Q Consensus 152 ----------------~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~ 215 (320)
.....+...+....+.|+.+.|..+|+++ . .+.... . .+...+..-... .++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~-----~-v~i~~A~lE~~~-~~d~~~ 338 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGP-----H-VFIYCAFIEYYA-TGSRAT 338 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCH-----H-HHHHHHHHHHHH-HCCSHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCCh-----H-HHHHHHHHHHHH-CCChHH
Confidence 01123344444455677888899999988 3 221111 1 111111111111 112444
Q ss_pred HHHHHHHhCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhc
Q psy9376 216 AIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSIS 262 (320)
Q Consensus 216 A~~~y~~~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~ 262 (320)
|..-|+.....|+++.+..+. .++ +. ...++.+.|-.+|+.+.
T Consensus 339 ar~ife~al~~~~~~~~~~~~--yid-~e-~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 339 PYNIFSSGLLKHPDSTLLKEE--FFL-FL-LRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH--HHH-HH-HHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCCHHHHHH--HHH-HH-HHcCCHHHHHHHHHHHH
Confidence 555555554556666654332 121 11 12456677777777764
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.19 E-value=1.4 Score=33.66 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhccCC---HHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhh
Q psy9376 113 AKHHQTIAEIYETDCVD---QEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~---~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~ 189 (320)
..+.++.|.++... .+ ..++|.+++..+.-- +....+++.-+|.-+.++|+|++|.++-+.+....|++..
T Consensus 40 ~qt~F~yAw~Lv~S-~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 40 IQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 35677777666654 44 457888887766532 3346789999999999999999999999999998887664
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.81 E-value=2 Score=33.20 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQ---EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~---~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~ 187 (320)
-..++.++.|.++... .+. .++|.+++..+.--+ ....+++..+|.-+.++|+|++|..+.+.++...|++
T Consensus 37 vs~~t~F~YAw~Lv~S-~~~~di~~GI~LLe~l~~~~~-----~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAE-----SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCC-----STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCc-----cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3455677887777665 444 578888887766322 2357899999999999999999999999999988876
Q ss_pred hh
Q psy9376 188 SL 189 (320)
Q Consensus 188 ~~ 189 (320)
..
T Consensus 111 ~Q 112 (144)
T 1y8m_A 111 KQ 112 (144)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 242
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.70 E-value=4.2 Score=38.08 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=17.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANL 63 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~ 63 (320)
......|+.+.|...|++|+..
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC
Confidence 4445678999999999999887
No 243
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.50 E-value=0.82 Score=43.16 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
-+++..+|.+.+.. ..++.|..+|.+|..+.|..| ..+..+|.+....|+.-+|+-+|.++..
T Consensus 152 hr~l~~LGDL~RY~-~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYR-NQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHH-HHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 35788999998887 899999999999999999986 5888999999999999999999998863
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.86 E-value=3.9 Score=32.01 Aligned_cols=108 Identities=15% Similarity=0.074 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKW------NNAGKAFVEAANLHMKS--GTKHDAACNLLDAANCFKKT-DNEAAIDCLS 97 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~------~~A~~~y~kA~~~~~~~--~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~ 97 (320)
..+||.=..+.... ...|+. ++-.+.|++|..-.+-. +....=+..+..-+. +... |+++|.+.|+
T Consensus 10 p~~yd~W~~yl~ll----E~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 10 ANNPEDWLSLLLKL----EKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQ 84 (161)
T ss_dssp CCSHHHHHHHHHHH----HHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHH
T ss_pred CCCHHHHHHHHHHH----HHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHH
Confidence 45666555544332 223777 77788888887765321 111222333333332 2333 8999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 98 KAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 98 kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
.|+.+ ...+ |.+|..-|..-.++ |+..+|...+.+|+.+.+.
T Consensus 85 ~a~~~---hKkF---AKiwi~~AqFEiRq-gnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 85 MARAN---CKKF---AFVHISFAQFELSQ-GNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHH---CTTB---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCB
T ss_pred HHHHH---hHHH---HHHHHHHHHHHHHc-ccHHHHHHHHHHHhccCCC
Confidence 99997 5556 88999999988888 9999999999999998766
No 245
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=88.69 E-value=6.3 Score=36.40 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy9376 33 AIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLL 78 (320)
Q Consensus 33 A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~ 78 (320)
-..+.-+..+.|+..+..+-=+....+..+++.+.++..+||.++.
T Consensus 14 r~~~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~ 59 (436)
T 2yin_A 14 RMSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLL 59 (436)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 3333444445555555555555555555555555555555554443
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.38 E-value=1.1 Score=42.42 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
..++..+|.+.+-. .+..|..+|.+|..+.|.+|. .+..+|.+.... |+.-+|+-+|.+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~------~~nqLavla~~~-~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSK-GDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------HHHHHHHHHHHT-TCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHhcc-cccHHHHHHHHHHHhc
Confidence 34667778887766 789999999999999999998 799999999997 9999999999999854
No 247
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=87.44 E-value=16 Score=33.71 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~~~ 106 (320)
.++.+-=+.++.+........++|.+|+-|+...++++.-..++. ......-+. ++..
T Consensus 28 ~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~--~~~~~~~~~--------------------~~~q 85 (436)
T 2yin_A 28 NNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQC--ASQVMQTGQ--------------------QHPQ 85 (436)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC------------------------------------
T ss_pred CCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCcccc--CcccccCCC--------------------Cccc
Confidence 468889999999999999999999999999876665532111110 000000000 0000
Q ss_pred CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc-CCchHHHHHHHHHHHHHH
Q psy9376 107 GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE-ESNSSANKCLLKVAHHAA 165 (320)
Q Consensus 107 ~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~-~~~~~a~~~~~~la~~~~ 165 (320)
.....-...+..+...+.+- +.++.|+.+|+..+..|+.. .+....+.++..++.+|.
T Consensus 86 t~~~~ke~L~~~~i~~f~kg-~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~ 144 (436)
T 2yin_A 86 THRQLKETLYETIIGYFDKG-KMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYE 144 (436)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011112344455555554 66777777777777777664 555666666666666664
No 248
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=87.13 E-value=6.2 Score=36.35 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHH--------------HHHHHHhcC--
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMK----SGTKHDAACNLL--------------DAANCFKKT-- 87 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~----~~~~~~aa~~~~--------------~aa~~y~~~-- 87 (320)
+..+-=+.++.+.+......|+|.+|+-|+..++.+.-. .+...+....+. ..| +...
T Consensus 5 ~~pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g--~~~~~f 82 (428)
T 2wm9_A 5 STPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVG--MQDVHF 82 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC-----------CCSS
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccC--CCcccc
Confidence 344555677888888899999999999999866654321 100000000000 000 0000
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHh
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~ 144 (320)
.-+.-++.+++|++.+.+.+.+..+..++..+...|+.. .+|.+-.+++.+...+|
T Consensus 83 te~~l~~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~-~dy~~Ls~~~~~~a~~y 138 (428)
T 2wm9_A 83 NEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKR-RDFERLAHLYDTLHRAY 138 (428)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHH
Confidence 112233455666666666666666666666666666665 56655555554444443
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.85 E-value=13 Score=29.61 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy9376 47 AKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET 125 (320)
Q Consensus 47 ~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~ 125 (320)
.|+++.|.+.-. .+++ ...|.++|...... +.+-|.+||.++ ++ +..+.-+|..
T Consensus 18 lg~l~~A~e~a~-------~l~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-------~D-------~~~L~~Ly~~ 72 (177)
T 3mkq_B 18 YGNLDAALDEAK-------KLND----SITWERLIQEALAQGNASLAEMIYQTQ-------HS-------FDKLSFLYLV 72 (177)
T ss_dssp TTCHHHHHHHHH-------HHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHT-------TC-------HHHHHHHHHH
T ss_pred cCCHHHHHHHHH-------HhCC----HHHHHHHHHHHHHcCChHHHHHHHHHh-------CC-------HHHHHHHHHH
Confidence 566666665422 2222 34677777776665 777777777665 34 3334444444
Q ss_pred ccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 126 DCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 126 ~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
. |+.++- .+..++....++. .....++..+|++++++++|.+.++
T Consensus 73 t-g~~e~L----~kla~iA~~~g~~-------n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 73 T-GDVNKL----SKMQNIAQTREDF-------GSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp H-TCHHHH----HHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred h-CCHHHH----HHHHHHHHHCccH-------HHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4 554332 2333333333322 2223445567778888887776654
No 250
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=84.32 E-value=20 Score=31.17 Aligned_cols=121 Identities=8% Similarity=0.001 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKK---WNNAGKAFVEAANLHMK-SGTKHDAACNLLDAANCFKKT---DNEAAIDCLSKA 99 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~---~~~A~~~y~kA~~~~~~-~~~~~~aa~~~~~aa~~y~~~---~~~eA~~~~~kA 99 (320)
.+..+.|+.+|-+++..--..|- -+-|-+.|.+|..+|+. ..+......+...+...+.+. ..+.--..-.++
T Consensus 92 ~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~ 171 (298)
T 2r17_C 92 AELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQC 171 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHH
Confidence 45568888888888887777766 67888899999999986 666666667777766666665 233233333444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHh-------c--cCCHHHHHHHHHHHHhHhhcc
Q psy9376 100 IVIYTDMGRFTMAAKHHQTIAEIYET-------D--CVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 100 ~~l~~~~~~~~~aa~~~~~la~~y~~-------~--l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
.....+.=...+..++....++++=. . ..+.++.++|++||+.+...-
T Consensus 172 t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~ 228 (298)
T 2r17_C 172 ALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQC 228 (298)
T ss_dssp HHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHH
Confidence 44444444555666666666666521 0 136667777777777765543
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.60 E-value=9.8 Score=28.59 Aligned_cols=69 Identities=14% Similarity=-0.018 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcC-C---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 74 ACNLLDAANCFKKT-D---NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 74 a~~~~~aa~~y~~~-~---~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
..+-.+.|-++... + ..++|..++..+.- +.+...-.+++.+|..+-+. |+|++|..+.+..+++-|.+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~ykl-g~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRL-KEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCCCC
Confidence 45566677777777 3 34577777765432 33556667899999999996 99999999999999998765
No 252
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=83.26 E-value=2.5 Score=29.80 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+-..|..+...++.+... |+|++||++.++|+.+..+
T Consensus 11 pLn~AH~~~RrAe~ll~~-gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAA-GKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 445677888889988888 9999999999999987655
No 253
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.90 E-value=23 Score=31.97 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=95.8
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCC-
Q psy9376 83 CFKKT-DNEAAIDCLSKAIVIYTDM-----------GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES- 149 (320)
Q Consensus 83 ~y~~~-~~~eA~~~~~kA~~l~~~~-----------~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~- 149 (320)
+.... ++++|++.+++........ ........+...++..|... ++.++|....+++-......+.
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~-~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLK-NDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhccCCc
Confidence 33444 7888888887664332211 01123345677888888886 9999999999999887766543
Q ss_pred -chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-hhhhhhhhcchhHhHHHHHHHHHhh-hhHHHHHHHHHHHHhCCC
Q psy9376 150 -NSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT-SLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPA 226 (320)
Q Consensus 150 -~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~-~~~~~~~~~~~~~~~~~a~~~~l~~-d~~~~~~A~~~y~~~~~~ 226 (320)
+...+..+.-.+..+...+++..+....-..... .+.............+.++.+-+.. +.-...+-+.. -....
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~--p~i~~ 241 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHH--PIMET 241 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHS--CCTTS
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCC--hHHHH
Confidence 3345677777788888889998876665555432 1111111000011122233333321 10000000100 01111
Q ss_pred ccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy9376 227 FQDSREYKLLRILIEHIEEQNVDGFTEAVKDY 258 (320)
Q Consensus 227 f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~y 258 (320)
...+.+...+.+++.++..++..+|.+.++.+
T Consensus 242 L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~ 273 (393)
T 4b4t_O 242 IVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQ 273 (393)
T ss_dssp SCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHH
T ss_pred hhcCCchHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 22334445566777888889999998766544
No 254
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.23 E-value=17 Score=28.94 Aligned_cols=89 Identities=12% Similarity=0.036 Sum_probs=47.2
Q ss_pred CCCHHHHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy9376 27 GNKIDEAIECY---------TRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLS 97 (320)
Q Consensus 27 ~~~~~~A~~~y---------~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~~~~eA~~~~~ 97 (320)
-|+++.|.+.- .+.|......|+++-|..||.++.+.. ...-.|.-.| +. +-+.
T Consensus 18 lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------~L~~Ly~~tg------~~----e~L~ 80 (177)
T 3mkq_B 18 YGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFD-------KLSFLYLVTG------DV----NKLS 80 (177)
T ss_dssp TTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHHHT------CH----HHHH
T ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------HHHHHHHHhC------CH----HHHH
Confidence 57888887764 344666666777777777666654331 1111111111 11 3333
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q psy9376 98 KAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQA 140 (320)
Q Consensus 98 kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA 140 (320)
+..++....|++ .....++-.. |+++++++.|.+.
T Consensus 81 kla~iA~~~g~~-------n~af~~~l~l-Gdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTREDF-------GSMLLNTFYN-NSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTTCH-------HHHHHHHHHH-TCHHHHHHHHHHT
T ss_pred HHHHHHHHCccH-------HHHHHHHHHc-CCHHHHHHHHHHC
Confidence 444555556662 2333344443 7788877777443
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.12 E-value=25 Score=31.61 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
+...++..+... |++.+++....+++...|-. -..+..+-.++...|+..+|++.|++..+
T Consensus 173 a~~~~~~~~l~~-g~~~~a~~~l~~~~~~~P~~------E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIAC-GRASAVIAELEALTFEHPYR------EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777776 99999999999999887764 34778888889999999999999998754
No 256
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=81.62 E-value=3.3 Score=28.74 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=17.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 121 EIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 121 ~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
.-..+. |++++|+.+|.+|++.+..
T Consensus 27 ve~D~~-g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 27 VKADKE-GNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 334555 8888888888888877643
No 257
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=80.86 E-value=3.4 Score=28.88 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 113 AKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 113 a~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
|..+..-|.-.... |++++|+.+|.+|++++-.
T Consensus 16 A~~lv~~Ave~D~~-g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 16 AATVLKRAVELDSE-SRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 33344444444565 8899999999888887643
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.75 E-value=8 Score=34.94 Aligned_cols=95 Identities=13% Similarity=0.009 Sum_probs=63.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHH-----cCChHHH-----------HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy9376 45 KMAKKWNNAGKAFVEAANLHMK-----SGTKHDA-----------ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107 (320)
Q Consensus 45 ~~~g~~~~A~~~y~kA~~~~~~-----~~~~~~a-----------a~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~ 107 (320)
...|+.+.|...+.+|+.+++- .....+. ..+....+..+... ++.+++..+.+++..+|-..
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 3468999999999999888741 1111111 11222233444444 78899988888888776544
Q ss_pred ChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 108 ~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
. .+..+-.++... |+..+|+..|++....+.+
T Consensus 206 ~------~~~~lm~al~~~-Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 206 P------LWTQLITAYYLS-DRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp H------HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 3 566677777776 9999999999988876644
No 259
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=79.54 E-value=22 Score=28.45 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=60.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH--HHHH----------cCC
Q psy9376 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIV--IYTD----------MGR 108 (320)
Q Consensus 42 ~~~~~~g~~~~A~~~y~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~--l~~~----------~~~ 108 (320)
..+...|.|..++- +..+++. ....|... .||.+. ++..|+.+.++.++ +.++ .=+
T Consensus 41 I~LyyngEY~R~Lf-------~L~~lNT---~Ts~YYk~-LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 41 IVLYLNGEYTRALF-------HLHKLNT---CTSKYYES-LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp HHHHHTTCHHHHHH-------HHHTCCB---HHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred hhhhhcchHhHHHH-------HHHhcch---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 33444566665443 4433332 33445554 788888 99999999999882 2111 112
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+.+.--.+..+|.+.... |+.++||.+|..+....+-
T Consensus 110 ~~DkEfFy~l~a~lltq~-g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLS-GYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp TTCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHh-cCHHHhhhHhhhhcCCccc
Confidence 233334678889999996 9999999999988776543
No 260
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.51 E-value=4.2 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=17.0
Q ss_pred HHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 122 IYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 122 ~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
-..+. |++++|+.+|.+|++.+..
T Consensus 20 e~D~~-g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 20 KADKE-GKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 33555 8888888888888876643
No 261
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=79.27 E-value=4.7 Score=27.89 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+...|.-.... |++++|+.+|.+|++++-.
T Consensus 16 l~~~Av~~D~~-g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 16 LVQKAIDLDTA-TQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 33334344555 8888888888888887644
No 262
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=79.22 E-value=43 Score=34.56 Aligned_cols=135 Identities=10% Similarity=-0.045 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSA 153 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a 153 (320)
..|.-+-..|.+. +.++|.+.+.+...+-...-.++ ..+|.-+-..|-+. |+.++|.++|.+..+.--. . -
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~-G~~~eA~~Lf~eM~~~G~~----P-D 199 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQ-GAFKELVYVLFMVKDAGLT----P-D 199 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCC----C-C
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCC----C-c
Confidence 4466666666665 88888888866544322211111 12566666777776 9999999999887653111 1 1
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHHhCCCccC
Q psy9376 154 NKCLLKVAHHAALLQN-YNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQD 229 (320)
Q Consensus 154 ~~~~~~la~~~~~~g~-y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~ 229 (320)
.-+|..+...+.+.|+ .++|.++++++...+...+...++ |. ....+-+..++..+...+.|..
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~----------~l--l~~~eR~~vL~~Vrkv~P~f~p 264 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA----------VL--LSEEDRATVLKAVHKVKPTFSL 264 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH----------SC--CCHHHHHHHHHHHGGGCCCCCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc----------cc--cChhhHHHHHHHHHHhCcccCC
Confidence 4577778888888887 478889999998775443332111 00 1223344556666667777754
No 263
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=78.09 E-value=5 Score=39.81 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=40.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q psy9376 85 KKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYE 138 (320)
Q Consensus 85 ~~~~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~ 138 (320)
.+.+++-|+.+.++|+.+.|..-. +|..|+.+|... |+++.|+-.+.
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~------tW~~La~vYi~l-~d~e~ALLtLN 395 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFE------SWYNLARCHIKK-EEYEKALFAIN 395 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHH------HHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhcCchhhH------HHHHHHHHHHHh-ccHHHHHHHHh
Confidence 334899999999999999886544 899999999997 99999987654
No 264
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.46 E-value=16 Score=25.69 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+...|.-.... |+|++|+.+|.+|++++..
T Consensus 18 lv~~Ave~D~~-g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 18 VLKRAVELDAE-SRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 33344444555 8899999999999887654
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.11 E-value=19 Score=27.24 Aligned_cols=68 Identities=7% Similarity=-0.124 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 74 ACNLLDAANCFKKT----DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 74 a~~~~~aa~~y~~~----~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
..+-.+.|-++... +..++|..++..+.-. +...-.+++-+|..+-+. |+|++|..+-+..+++-|.+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~ykl-gdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTCTTC
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCC
Confidence 34555556666655 4567888887655422 445566899999988896 99999999999999987775
No 266
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=75.75 E-value=4.1 Score=30.24 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 122 IYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 122 ~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
-.... |+|++|+.+|.+|+++|-.
T Consensus 27 e~D~a-g~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 27 QEDKA-GNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHc-cCHHHHHHHHHHHHHHHHH
Confidence 33444 7888888888888887644
No 267
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.47 E-value=7.9 Score=26.73 Aligned_cols=35 Identities=11% Similarity=-0.057 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
.+.|+++..+| ...-..|++++|+.+|.++++.+.
T Consensus 16 ~~~Ai~lv~~A-ve~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 16 EEMARKYAINA-VKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHH
Confidence 46777777775 555778999999999988888753
No 268
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=74.92 E-value=41 Score=30.77 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=33.8
Q ss_pred HHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy9376 134 VEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181 (320)
Q Consensus 134 i~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~ 181 (320)
++.++++++.|...+.+..+..++..+...|....+|.+-.+++.+..
T Consensus 88 ~~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a 135 (428)
T 2wm9_A 88 MELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLH 135 (428)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 446777777777777777777777777777777777776665555544
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.09 E-value=14 Score=38.59 Aligned_cols=124 Identities=10% Similarity=0.037 Sum_probs=69.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----------------ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy9376 40 AANMFKMAKKWNNAGKAFVEAANLHMKSG-----------------TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIV 101 (320)
Q Consensus 40 ag~~~~~~g~~~~A~~~y~kA~~~~~~~~-----------------~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~ 101 (320)
.|.++-..|++++|.++|++|..-..... ........|..+...+.+. .++.++++.+.|++
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 37888899999999999999854221100 0001124556666666655 56677777777765
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 102 IYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 102 l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
... .++.......|.++=+.+-.. |+|++|-..... .++... ..+|+..+...+.+.|+.++
T Consensus 928 ~~~-~~~~~~~~~l~~~iFk~~L~l-~~ye~Ay~aL~~----~pd~~~---r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 928 SKE-TDDEDLSIAITHETLKTACAA-GKFDAAHVALMV----LSTTPL---KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HCC-SCCHHHHHHHHHHHHHHHHHH-CCSGGGGHHHHH----HHHSSS---CHHHHHHHHHHHHHHCCHHH
T ss_pred hcc-CCChhhHHHHHHHHHHHHHhh-CCHHHHHHHHHh----CCCHHH---HHHHHHHHHHHHHhCCChhh
Confidence 422 233333344566665555554 777777554422 222211 23566666666665555433
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.76 E-value=21 Score=27.46 Aligned_cols=68 Identities=7% Similarity=-0.116 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhcc
Q psy9376 74 ACNLLDAANCFKKT----DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147 (320)
Q Consensus 74 a~~~~~aa~~y~~~----~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~ 147 (320)
..+-.+.+-++... +..++|..++....- .+...-.+++-+|..+-+. |+|++|..+-+..+++-|.+
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl-~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKL-GEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCc
Confidence 44555556666665 456788888776552 2224455899999988996 99999999999999987765
No 271
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=73.58 E-value=9.3 Score=26.32 Aligned_cols=33 Identities=18% Similarity=-0.003 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy9376 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLH 64 (320)
Q Consensus 31 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~ 64 (320)
+.|+++..+| .-.-..|+|++|+.+|.++++.+
T Consensus 9 ~~Ai~lv~~A-ve~D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 9 DMARKYAILA-VKADKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp HHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHH
Confidence 5677777665 45566788888888888887765
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.23 E-value=43 Score=28.61 Aligned_cols=55 Identities=7% Similarity=-0.062 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
|+.++|++..+..++-.|.+ ++.-..+-++++-.|++++|.+-++-+....++..
T Consensus 11 g~L~~al~~~~~~VR~~P~d------a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKD------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 89999999999999887775 55667788999999999999999999988766543
No 273
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.93 E-value=25 Score=28.58 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhH-HHHHHHHHhhhhHHHHHHHHHHHHhCCCccC
Q psy9376 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYF-FRAALCHLCIDVINAHNAIDRYKTIYPAFQD 229 (320)
Q Consensus 151 ~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~-~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~ 229 (320)
.+......-+|.++...++|.+|-+.+.++.+.++..... .+... .-...+.+..+..-....+..| +.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~---~k~~IL~yLIp~~Ll~G~iP~~~ll~~~-------~~ 80 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK---NKRMILIYLLPVKMLLGHMPTVELLKKY-------HL 80 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH---HHHHHHHHHHHHHHHTTCEECHHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH---HHHHHHHHHHHHHHHcCCCCCHHHhhhC-------ch
Confidence 4567788889999999999999999999999887653311 11111 0112222222111111122222 11
Q ss_pred cHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhc
Q psy9376 230 SREYKLLRILIEHIEEQNVDGFTEAVKDYDSIS 262 (320)
Q Consensus 230 s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~ 262 (320)
. -...+..|+..||...|+++++.++...
T Consensus 81 ~----~y~~L~~Avr~Gdl~~f~~~l~~~~~~f 109 (203)
T 3t5x_A 81 M----QFAEVTRAVSEGNLLLLHEALAKHEAFF 109 (203)
T ss_dssp G----GGHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred h----HHHHHHHHHHhCCHHHHHHHHHHhHHHH
Confidence 1 1346778899999999999999987543
No 274
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=70.79 E-value=35 Score=35.22 Aligned_cols=74 Identities=9% Similarity=-0.090 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhh
Q psy9376 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190 (320)
Q Consensus 114 ~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~ 190 (320)
.++..+=..|-+. |+.++|..+|.+..+.-...-.+ -..+|..+..-|.+.|+.++|.++|+++...+....+.
T Consensus 128 ~TynaLIdglcK~-G~leeA~~Lf~eM~~m~~kG~~P--dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 128 QRLLAFFKCCLLT-DQLPLAHHLLVVHHGQRQKRKLL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHSHHHHTTC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhcCCCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 3577777778887 99999999997765432111011 14688999999999999999999999998876555443
No 275
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=70.25 E-value=9.3 Score=26.92 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy9376 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD 105 (320)
Q Consensus 73 aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~ 105 (320)
.|..+..-+..+... +|++||+|.++|+....+
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 344444444444444 677777777776655543
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.16 E-value=16 Score=34.44 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 69 TKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDM-GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 69 ~~~~aa~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~~~~-~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
+....+..++.+-..|... .++.|..+..++. +|.. .+..+.+++++-+|.++--+ ++|.+|.+++..|+...+.
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q-~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQ-LDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTSSCSC
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCc
Confidence 3445666777777777777 7888888888885 6654 45667789999999999998 9999999999999987765
Q ss_pred cCC-chHHHHHHHHHHHHHHHccC
Q psy9376 147 EES-NSSANKCLLKVAHHAALLQN 169 (320)
Q Consensus 147 ~~~-~~~a~~~~~~la~~~~~~g~ 169 (320)
... ......++..+.-+-.-+|+
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LLlG~ 326 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLLMGD 326 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhhHHHHHHHHHHhHHhhcCC
Confidence 432 22333444444444333455
No 277
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=67.44 E-value=11 Score=26.23 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
|....|+++..+| .-.-..|+|++|+.+|..+++.+.
T Consensus 11 ~~~~~A~~lv~~A-ve~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 11 PQSTAAATVLKRA-VELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5556777777775 455678999999999999988764
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=67.28 E-value=47 Score=26.60 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=45.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh--Hhhc----------cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 119 IAEIYETDCVDQEKAVEHYEQAAT--YFKG----------EESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 119 la~~y~~~l~~~~~Ai~~y~kA~~--~~~~----------~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
-+.+|... .+|.+|+.+.+..+. +-++ -=++....-.+..+|.++...|+-++||.+|...-.
T Consensus 68 k~LCy~kl-KdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 68 ESLCYKKK-KDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 34567775 899999999999882 2211 012233445678899999999999999999998754
No 279
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=64.70 E-value=15 Score=27.12 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
-.+.|+.+..+| .-.-..|+|++|+.+|..+++++.
T Consensus 14 ~l~kAi~lv~~A-ve~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 14 NLQKAIDLASKA-AQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHHH
Confidence 367888888776 455667999999999999988764
No 280
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.43 E-value=26 Score=36.46 Aligned_cols=101 Identities=9% Similarity=0.036 Sum_probs=73.3
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHH-----------------HHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy9376 78 LDAANCFKKT-DNEAAIDCLSKAIVIY-----------------TDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQ 139 (320)
Q Consensus 78 ~~aa~~y~~~-~~~eA~~~~~kA~~l~-----------------~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~k 139 (320)
.-.|.++... ++++|.++|++|..-. .........+.+|.++..+++.. +.++.+++.-..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~-~~~~~vi~fa~l 924 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE-SAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 3446888877 9999999999885321 11111222346899999999998 999999999999
Q ss_pred HHhHhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy9376 140 AATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180 (320)
Q Consensus 140 A~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~ 180 (320)
|++.... +........+.++=.....+|+|++|..+....
T Consensus 925 Ai~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 925 ADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9986433 333334456778888889999999998777544
No 281
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=62.26 E-value=28 Score=24.43 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
+-.+.|+++..+| .-.-..|+|++|+.+|..+++.+.
T Consensus 10 ~~l~~Ai~lv~~A-ve~D~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 10 SDSTAAVAVLKRA-VELDAESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4456777777776 555678999999999999998864
No 282
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=56.76 E-value=43 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 28 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
.-.+.|+.+..+| .-.-..|+|++|+.+|..+++.+.
T Consensus 8 ~~l~~A~~l~~~A-v~~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 8 DFLTKGIELVQKA-IDLDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3467888887776 455667999999999999988764
No 283
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=53.58 E-value=69 Score=28.71 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQ--EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL 166 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~--~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~ 166 (320)
.-|-...-++.+=+.-+.|....=..++.+||.+-+.. .-+ ..++.+|.+|+...+..-+.+ -.-.|.-+|..+.+
T Consensus 231 s~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~-pt~gr~~~l~L~~~AI~sa~~yY~n~-HvYPYtylgGy~yR 308 (472)
T 3re2_A 231 SIQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEIS-PTPGRPPAEELFKEAITVAKREYSDH-HIYPYTYLGGYYYR 308 (472)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHS-CCTTSCCHHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcC-CCCCCCCHHHHHHHHHHHHHHHhccC-Cccchhhhhhhhhh
Confidence 34555666777778888887766667788888875542 222 348999999987655432111 13467778889999
Q ss_pred ccCHHHHHHHHHHHHH
Q psy9376 167 LQNYNKAIQIYEEVGR 182 (320)
Q Consensus 167 ~g~y~~Ai~~y~~~~~ 182 (320)
.+++.+|+..+-++..
T Consensus 309 ~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 309 KKKYYEAIASWVDAGY 324 (472)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 9999999999998875
No 284
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=52.33 E-value=71 Score=29.18 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHH
Q psy9376 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQ--EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA 165 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~--~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~ 165 (320)
+-.+-+..-++.+-+.-+.|....=.-++.+||.+-+-. ..+ +.++++|++|+...+..-+-.. .-.|.-+|..+.
T Consensus 237 Ds~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~-pt~grp~~~~Lf~~AI~~ar~~Y~~~h-vYPYtYlgG~~~ 314 (489)
T 4gq4_A 237 DSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELE-PTPGRPDPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHC 314 (489)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHS-CCTTSCCHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcC-CCCCCCCHHHHHHHHHHHHHHhcccCc-ccceeecchHHH
Confidence 446666777778888888888777777888999875543 333 3488999999986655322111 356777899999
Q ss_pred HccCHHHHHHHHHHHHH
Q psy9376 166 LLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 166 ~~g~y~~Ai~~y~~~~~ 182 (320)
+.++|.+|+..+-++..
T Consensus 315 R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 315 RNRNVREALQAWADTAT 331 (489)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhh
Confidence 99999999999998875
No 285
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=46.31 E-value=1.3e+02 Score=26.99 Aligned_cols=104 Identities=9% Similarity=-0.045 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHH
Q psy9376 58 VEAANLHMKSGTKHDAACNLLDAANCFKKT---DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAV 134 (320)
Q Consensus 58 ~kA~~~~~~~~~~~~aa~~~~~aa~~y~~~---~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai 134 (320)
++.+-+.-..|....-.-++-++|.+-... ....++..|.+|+...+..-.....-=+.+..|..|+. +++.+|+
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~--~~~reAl 316 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRK--KKYYEAI 316 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhc--chHHHHH
Confidence 334444433333222223445555543322 33448888888888766432211111133444444444 8999999
Q ss_pred HHHHHHHhHhhccCCchHHHHHHHHHHHH
Q psy9376 135 EHYEQAATYFKGEESNSSANKCLLKVAHH 163 (320)
Q Consensus 135 ~~y~kA~~~~~~~~~~~~a~~~~~~la~~ 163 (320)
.++-.|....+.-+-.+.-.+.|..+-++
T Consensus 317 ~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 345 (472)
T 3re2_A 317 ASWVDAGYVAGKYNYSKDDEEMYKEFHEI 345 (472)
T ss_dssp HHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 99999988776654333333555554444
No 286
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=45.57 E-value=24 Score=23.65 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
-..+|+.+... |++++|+.+|-+|+..++.
T Consensus 20 eV~~GE~L~~~-g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQ-GDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHcCC
Confidence 45678888887 9999999999999998876
No 287
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=41.55 E-value=1.3e+02 Score=27.56 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHH
Q psy9376 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQ--EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAAL 166 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~--~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~ 166 (320)
--|-...-++.+=+.-+.|....=..++.+||.+-+.. .-+ ..++.+|.+|+...+..-+.. -...|.-+|..+.+
T Consensus 253 s~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~-pt~gr~~~~~L~~~AI~sa~~~Y~n~-HvYPYtYlgGy~yR 330 (550)
T 3u84_A 253 SLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELE-PTPGRPDPLTLYHKGIASAKTYYRDE-HIYPYMYLAGYHCR 330 (550)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHS-CCTTCCCHHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcC-CCCCCCCHHHHHHHHHHHHHHHhccC-Cccceeecchhhhh
Confidence 34555666777777778887766666788888875442 222 258899999987654432111 13467778889999
Q ss_pred ccCHHHHHHHHHHHHH
Q psy9376 167 LQNYNKAIQIYEEVGR 182 (320)
Q Consensus 167 ~g~y~~Ai~~y~~~~~ 182 (320)
.+++.+|+..+-++..
T Consensus 331 ~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 331 NRNVREALQAWADTAT 346 (550)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 9999999999998875
No 288
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=40.92 E-value=35 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHc
Q psy9376 89 NEAAIDCLSKAIVIYTDM 106 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~~ 106 (320)
+..|-.+..+|+.+...+
T Consensus 13 h~~AF~~Is~aL~~DE~~ 30 (89)
T 3eab_A 13 HKQAFEYISIALRIDEDE 30 (89)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 556667777777666654
No 289
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=40.30 E-value=1.2e+02 Score=27.06 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHHHH
Q psy9376 29 KIDEAIECYTRAANMFKM-----------AKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 29 ~~~~A~~~y~~ag~~~~~-----------~g~~~~A~~~y~kA~~~~~ 65 (320)
.||.+.-+|+-++..... ......|..+|++|+-++.
T Consensus 110 ~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 110 VFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 578888888766432221 1136888999999988875
No 290
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=39.99 E-value=1.8e+02 Score=27.13 Aligned_cols=27 Identities=26% Similarity=0.075 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 115 HHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 115 ~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
.|.+.|.-+.. |..++|-..-++|-++
T Consensus 490 yy~~AA~k~~y--G~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 490 YYVNAARKALN--GDLEQAKIDAEKAKEY 516 (526)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccHHHHHHHHHHHHH
Confidence 45555554443 5556555554444443
No 291
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.55 E-value=40 Score=22.53 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..+|+.+...|++++|+.+|-++...+++..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 5689999999999999999999998876654
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.26 E-value=1e+02 Score=31.28 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhc-----------------cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKG-----------------EESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~-----------------~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~ 179 (320)
+-+|.+|-.. |++++|.++|++|..-... .........+|.++..++...+-++-+++.-+.
T Consensus 844 yv~gr~~L~~-ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 844 YLKALIYLKS-KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6689999997 9999999999998732211 111122335788888999999999999888888
Q ss_pred HHHh
Q psy9376 180 VGRT 183 (320)
Q Consensus 180 ~~~~ 183 (320)
++..
T Consensus 923 AI~~ 926 (950)
T 4gq2_M 923 ADAS 926 (950)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8764
No 293
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=37.20 E-value=2e+02 Score=26.29 Aligned_cols=102 Identities=10% Similarity=-0.030 Sum_probs=53.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHH
Q psy9376 59 EAANLHMKSGTKHDAACNLLDAANCFKKT---DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVE 135 (320)
Q Consensus 59 kA~~~~~~~~~~~~aa~~~~~aa~~y~~~---~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~ 135 (320)
+.+=+....|....-.-++-++|.+-... .-..++..|.+|+...+..-+....-=+.+..|..|+. +++.+|+.
T Consensus 262 ~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~--~~~reAl~ 339 (550)
T 3u84_A 262 KLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRN--RNVREALQ 339 (550)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhc--chHHHHHH
Confidence 33434433333222223445555443322 23347888888888765432221111133444444444 89999999
Q ss_pred HHHHHHhHhhccCCchHHHHHHHHHHH
Q psy9376 136 HYEQAATYFKGEESNSSANKCLLKVAH 162 (320)
Q Consensus 136 ~y~kA~~~~~~~~~~~~a~~~~~~la~ 162 (320)
++-.|....+.-+-.+.-.+.|..+-+
T Consensus 340 ~WA~Aa~Vi~~YNY~reDeEIYKEf~e 366 (550)
T 3u84_A 340 AWADTATVIQDYNYCREDEEIYKEFFE 366 (550)
T ss_dssp HHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 999998877665433333444444333
No 294
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=35.72 E-value=45 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=24.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
-..+|+.+... |+++.|+.+|-+|+..++.
T Consensus 23 eV~lGE~L~~~-g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQ-GDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHcCC
Confidence 45678877777 9999999999889888765
No 295
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.65 E-value=67 Score=23.58 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHhHh
Q psy9376 128 VDQEKAVEHYEQAATYF 144 (320)
Q Consensus 128 ~~~~~Ai~~y~kA~~~~ 144 (320)
|+.++|+++|.+.+..+
T Consensus 36 g~k~~Al~lYk~GI~eL 52 (116)
T 2dl1_A 36 GQKEEAKNYYKQGIGHL 52 (116)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 56666666666655543
No 296
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=34.76 E-value=2.5e+02 Score=26.14 Aligned_cols=49 Identities=24% Similarity=0.095 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy9376 51 NNAGKAFVEAANLHMKSGT--KHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYT 104 (320)
Q Consensus 51 ~~A~~~y~kA~~~~~~~~~--~~~aa~~~~~aa~~y~~~~~~eA~~~~~kA~~l~~ 104 (320)
++|+++|++|++...++.. ..+....|.+++.. ++-|..+|.+|.+...
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~-----yE~aGDyy~~AA~k~~ 499 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKK-----HEMAGDYYVNAARKAL 499 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhh-----hhhccHHHHHHHHHHh
Confidence 5667777777777665542 22334444444443 6667777777776653
No 297
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=32.77 E-value=2e+02 Score=26.28 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchH
Q psy9376 76 NLLDAANCFKKT---DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSS 152 (320)
Q Consensus 76 ~~~~aa~~y~~~---~~~eA~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~ 152 (320)
++.++|.+-.-. ..+.++..|++|+...+..-..... --|.-+|..+-+. +++.+|+.++-.|......-+-.+.
T Consensus 264 ALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hv-YPYtYlgG~~~R~-~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 264 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI-YPYMYLAGYHCRN-RNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS-HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred hhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcc-cceeecchHHHHh-hhHHHHHHHhhhhhhhhhhcccccc
Confidence 444555443322 2344678888888876543221111 1244445444444 8999999999999887665432222
Q ss_pred HHHHHHHHHHH
Q psy9376 153 ANKCLLKVAHH 163 (320)
Q Consensus 153 a~~~~~~la~~ 163 (320)
-.+.|..+-++
T Consensus 342 DeEiYke~~eI 352 (489)
T 4gq4_A 342 DEEIYKEFFEV 352 (489)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 23444444433
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.09 E-value=1.6e+02 Score=22.69 Aligned_cols=84 Identities=8% Similarity=0.053 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 92 A~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
-...+++++..+.+...+..-.+ +.++=..|.... +.+.+.|.-...- +-....+..|..-|.++...|++.
T Consensus 47 l~~lLErc~~~f~~~~~YknD~R-yLklWl~ya~~~---~dp~~if~~L~~~----~IG~~~AlfYe~wA~~lE~~g~~~ 118 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPR-FISYCLKFAEYN---SDLHQFFEFLYNH----GIGTLSSPLYIAWAGHLEAQGELQ 118 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHH-HHHHHHHHHTTB---SCHHHHHHHHHTT----TTTTTBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcccccccCCHH-HHHHHHHHHHhc---CCHHHHHHHHHHC----CCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45677888887765544332222 344444444432 2366666554432 222334678899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy9376 172 KAIQIYEEVGRT 183 (320)
Q Consensus 172 ~Ai~~y~~~~~~ 183 (320)
+|.++|+.....
T Consensus 119 ~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 119 HASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.02 E-value=3.6e+02 Score=27.25 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-----------------HHcCChHHHHHHHHHHHHHHHhccCCHHHHHHH
Q psy9376 75 CNLLDAANCFKKT-DNEAAIDCLSKAIVIY-----------------TDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEH 136 (320)
Q Consensus 75 ~~~~~aa~~y~~~-~~~eA~~~~~kA~~l~-----------------~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~ 136 (320)
..|. .|.+|... ++++|..+|++|..-. ...........+|.++..+++.. +-++-+++.
T Consensus 842 ~~yv-~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~-~a~~~vi~f 919 (950)
T 4gq2_M 842 AVYL-KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE-SAYIDALEF 919 (950)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 3454 46777777 8899999998876321 11111112234777888888887 888888888
Q ss_pred HHHHHhHhhccCCchHHHHHHHHHH
Q psy9376 137 YEQAATYFKGEESNSSANKCLLKVA 161 (320)
Q Consensus 137 y~kA~~~~~~~~~~~~a~~~~~~la 161 (320)
-+.|++.... +++....+.+.++=
T Consensus 920 A~lAI~~~~~-dd~~l~~~l~~r~f 943 (950)
T 4gq2_M 920 SLLADASKET-DDEDLSIAITHETL 943 (950)
T ss_dssp HHHHHHTCCS-CCHHHHHHHHHHHH
T ss_pred HHHHHhhccc-CCccchHHHHHHHH
Confidence 8888875543 33333334444433
No 300
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=31.97 E-value=9.7 Score=32.37 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 27 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
.|....|+++..+| .-.-..|+|++|+.+|..++++..
T Consensus 17 dp~~~~Ai~lv~~A-Ve~D~~g~y~eAl~lY~eaIe~Ll 54 (257)
T 2ymb_A 17 DPQSTAAATVLKRA-VELDSESRYPQALVCYQEGIDLLL 54 (257)
T ss_dssp ---------------------------------------
T ss_pred ChhHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 57777888888776 455668999999999988888763
No 301
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.08 E-value=2e+02 Score=22.97 Aligned_cols=61 Identities=13% Similarity=0.000 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHH
Q psy9376 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYN 171 (320)
Q Consensus 109 ~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~ 171 (320)
..+.....+-+|.++..+ +++.+|-+.+.+|...++..+ ......++.-+.-+-.-+|+..
T Consensus 10 ~~q~v~Y~YYlGr~~~~~-~~y~~A~~~L~~A~~~~~~~~-~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFD-SDFKQAEEYLSFAFEHCHRSS-QKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHCCHhH-HHHHHHHHHHHHHHHHHcCCCC
Confidence 456677899999999998 999999999999999887653 3334455555555555567643
No 302
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.21 E-value=44 Score=22.64 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=21.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q psy9376 157 LLKVAHHAALLQNYNKAIQIYEEVGR 182 (320)
Q Consensus 157 ~~~la~~~~~~g~y~~Ai~~y~~~~~ 182 (320)
..++|.=|..+|+|+.|+.+|+.+..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45677888899999999999998763
No 303
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=30.05 E-value=18 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=19.6
Q ss_pred CchHHHHhHHHHHHHhhhhhhccccC
Q psy9376 1 MTDEKLVCEKQLAAALLRVVFITKVG 26 (320)
Q Consensus 1 ~~~~~l~~~~~~~~k~~~~~~~~~~~ 26 (320)
+|+|+++..+..+..-||+.|.+++.
T Consensus 18 lsdeevme~hk~adermK~~w~~Ii~ 43 (63)
T 2yfv_C 18 LSDEEVMERHKKADENMKRVWSQIIQ 43 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888877787778877766653
No 304
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.49 E-value=71 Score=22.53 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=25.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhhhhh
Q psy9376 158 LKVAHHAALLQNYNKAIQIYEEVGRTSLDSS 188 (320)
Q Consensus 158 ~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~ 188 (320)
..+|+.+...|+++.|+.+|-++...+++..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 5679999999999999999988888766543
No 305
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.64 E-value=5e+02 Score=26.40 Aligned_cols=256 Identities=11% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------------ChHH
Q psy9376 9 EKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSG----------------TKHD 72 (320)
Q Consensus 9 ~~~~~~k~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~~~~----------------~~~~ 72 (320)
+||+|.=+....+..+ |+|++|+.+--.||..|....+.+---..-.++++-|.+.+ ++.-
T Consensus 68 ~r~laalvaSkvyy~L---g~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL 144 (963)
T 4ady_A 68 DREMAALIASKVYYNL---GEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKL 144 (963)
T ss_dssp THHHHHHHHHHHHHHH---TCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHH
T ss_pred hHHHHHHHHHHHheec---cchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHH
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH--HHHHHHcCCh-------HHHHHHHHHHHHHHHhccCCHHH-HHHHHHHHHh
Q psy9376 73 AACNLLDAANCFKKTDNEAAIDCLSKA--IVIYTDMGRF-------TMAAKHHQTIAEIYETDCVDQEK-AVEHYEQAAT 142 (320)
Q Consensus 73 aa~~~~~aa~~y~~~~~~eA~~~~~kA--~~l~~~~~~~-------~~aa~~~~~la~~y~~~l~~~~~-Ai~~y~kA~~ 142 (320)
...+-.-.-.|+....+.+|+....++ +++.++.=+. ....++..-+-.+-... -..+. -.+.++-+++
T Consensus 145 ~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~l-v~p~~fr~~vLr~l~~ 223 (963)
T 4ady_A 145 TSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITT-VTNSKFRSSILRKSFD 223 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHH
Q ss_pred HhhccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhhhhhhhcchhHhHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy9376 143 YFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKT 222 (320)
Q Consensus 143 ~~~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~d~~~~~~A~~~y~~ 222 (320)
+|...+.+ -|..+..+...+++.+.+.++|.+... .++.++.++-.-.+.+.....+..+..+.-..-+.+.+
T Consensus 224 Iy~k~~~~-----dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~k 296 (963)
T 4ady_A 224 FLMNMPNC-----DYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPA 296 (963)
T ss_dssp HHHHSSSC-----CHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHhCCch-----hHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHH
Q ss_pred hCCCccCcHHHHHHHHHHHHHHhcCHhHHHHHHHHHhhhcchhhhHHHHHHHHHHhhcCCCCCchhhhchhHHHhHHHHH
Q psy9376 223 IYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYFFRAAL 302 (320)
Q Consensus 223 ~~~~f~~s~e~~~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ld~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~y~~~a~~ 302 (320)
+.+...+..-..+-...+ .+++.--..++.+||..+.... ..
T Consensus 297 L~~ILsg~~~~~Lyl~FL---------------------~~~n~~d~~~l~~~K~~ld~r~-----------------s~ 338 (963)
T 4ady_A 297 LLNILSGLPTCDYYNTFL---------------------LNNKNIDIGLLNKSKSSLDGKF-----------------SL 338 (963)
T ss_dssp HHHHTTSHHHHHHHHHHH---------------------HHHCCCCHHHHHHHHHHSCTTS-----------------HH
T ss_pred HHHHhCCCChHHHHHHHH---------------------HhccccchhhHHHHHhhhcchh-----------------hH
Q ss_pred HHHhHHHHHHH
Q psy9376 303 CHLCIDVINAY 313 (320)
Q Consensus 303 c~~~~~~~~~~ 313 (320)
||+++-.+||+
T Consensus 339 ~~~A~~f~Naf 349 (963)
T 4ady_A 339 FHTAVSVANGF 349 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 306
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=25.43 E-value=1.8e+02 Score=24.08 Aligned_cols=55 Identities=5% Similarity=-0.068 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 88 DNEAAIDCLSKAIVIYTDM---GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 88 ~~~eA~~~~~kA~~l~~~~---~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
+.+.|..+|+.|.++.... -+|-..+-++.-.--.|+-. +++++|+..-++|.++
T Consensus 140 ~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIl-n~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 140 SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKY-GEKKQVFNMLNSLGKI 197 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHH
Confidence 4688999999999987642 23445555555555566664 9999999999999775
No 307
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.19 E-value=2.7e+02 Score=22.47 Aligned_cols=84 Identities=8% Similarity=0.066 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCH
Q psy9376 94 DCLSKAIVIYTDMGRF---TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNY 170 (320)
Q Consensus 94 ~~~~kA~~l~~~~~~~---~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y 170 (320)
..+++++..+.+...+ ..=-++|...+..+.. ++..++.+.|.-...- ..| ...+..|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~--~~~~~p~~if~~L~~~--~IG--~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLS--NNFHESENTFKYMFNK--GIG--TKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHH--TSS--TTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcc--cccCCHHHHHHHHHHC--CCc--HHHHHHHHHHHHHHHHcCCH
Confidence 5778888877665443 2334456666665422 4577888888766543 222 22467889999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy9376 171 NKAIQIYEEVGRT 183 (320)
Q Consensus 171 ~~Ai~~y~~~~~~ 183 (320)
.+|.++|+.....
T Consensus 132 ~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 132 LEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988765
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.09 E-value=2e+02 Score=23.60 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhhccCCchHHHHHHHHHHHHHHHccCHHH
Q psy9376 93 IDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNK 172 (320)
Q Consensus 93 ~~~~~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~~~~~~~a~~~~~~la~~~~~~g~y~~ 172 (320)
...+++++..+.+...+..-.+ |.++=.-|... .+.+.+.|.-...---..+- +..|...|.++...|++.+
T Consensus 97 ~~lLErc~~~F~~~~rYknD~R-yLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~----AlfYe~wA~~lE~~g~~~~ 168 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVR-YLRIWMQYVNY---IDEPVELFSFLAHHHIGQES----SIFYEEYANYFESRGLFQK 168 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHH-HHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTB----HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcccccccCCHH-HHHHHHHHHHc---cCCHHHHHHHHHHCCcchhH----HHHHHHHHHHHHHcCCHHH
Q ss_pred HHHHHHHHHHhh
Q psy9376 173 AIQIYEEVGRTS 184 (320)
Q Consensus 173 Ai~~y~~~~~~~ 184 (320)
|.++|+......
T Consensus 169 A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 169 ADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
No 309
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=23.82 E-value=2.2e+02 Score=21.05 Aligned_cols=35 Identities=3% Similarity=-0.039 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9376 30 IDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHM 65 (320)
Q Consensus 30 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~kA~~~~~ 65 (320)
|+.|++...+|- ..-..|++++......||..|..
T Consensus 33 ydgal~~l~~A~-~ai~~~d~~~k~~~i~KA~~Ii~ 67 (131)
T 3iqc_A 33 YEGILRFSSQAK-RCIENEDIEKKIYYINRVTDIFT 67 (131)
T ss_dssp HHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHH
Confidence 344555555443 33446888888888888888764
No 310
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.44 E-value=1.3e+02 Score=22.80 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHhh
Q psy9376 111 MAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145 (320)
Q Consensus 111 ~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~~~ 145 (320)
..|..+...|.+|... |+.+.|--.|-+.+.++-
T Consensus 38 rta~~llr~A~~y~~e-gd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 38 RSGVEIIRMASIYSEE-GNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH
Confidence 3444677788899998 999999999999887763
No 311
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.12 E-value=2.3e+02 Score=20.64 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHH
Q psy9376 49 KWNNAGKAFVEAANLHMKSGTKHDAA 74 (320)
Q Consensus 49 ~~~~A~~~y~kA~~~~~~~~~~~~aa 74 (320)
.|++|..+..+|+.+-+. |++..+.
T Consensus 18 ~h~~AF~~Is~AL~~DE~-g~k~~Al 42 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL-GQKEEAK 42 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHH
T ss_pred HHHHHHHHHHHHhhhhhc-CCHHHHH
Confidence 356666666777766542 4444333
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.50 E-value=1.5e+02 Score=22.71 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=33.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 104 TDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 104 ~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
..+|--...|..|..-|..++.. |++.+|.+.|+..++.
T Consensus 92 ~~~~IG~~~AlfYe~wA~~lE~~-g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 92 YNHGIGTLSSPLYIAWAGHLEAQ-GELQHASAVLQRGIQN 130 (152)
T ss_dssp HTTTTTTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT
T ss_pred HHCCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Confidence 34555567778899999999998 9999999999999875
No 313
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=21.25 E-value=20 Score=30.42 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhHhhc
Q psy9376 117 QTIAEIYETDCVDQEKAVEHYEQAATYFKG 146 (320)
Q Consensus 117 ~~la~~y~~~l~~~~~Ai~~y~kA~~~~~~ 146 (320)
..-|.-+.+. |+|++|+.+|++|++++-.
T Consensus 27 v~~AVe~D~~-g~y~eAl~lY~eaIe~Ll~ 55 (257)
T 2ymb_A 27 LKRAVELDSE-SRYPQALVCYQEGIDLLLQ 55 (257)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 3333334555 8888888888888887654
No 314
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.53 E-value=4.9e+02 Score=23.77 Aligned_cols=138 Identities=9% Similarity=-0.040 Sum_probs=79.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhHh-----hccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-hhhhhh
Q psy9376 116 HQTIAEIYETDCVDQEKAVEHYEQAATYF-----KGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT-SLDSSL 189 (320)
Q Consensus 116 ~~~la~~y~~~l~~~~~Ai~~y~kA~~~~-----~~~~~~~~a~~~~~~la~~~~~~g~y~~Ai~~y~~~~~~-~~~~~~ 189 (320)
..++-.+|.+. ++..-+-..+. +++-- .+.-...+....+.-+|.++...++|.+|-+.+..+.+. ++....
T Consensus 179 ~n~L~kiYFkl-~~~~lckni~k-~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~ 256 (455)
T 3t5v_B 179 VNKLNNIYFRI-ESPQLCSNIFK-NFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLT 256 (455)
T ss_dssp HHHHHHHHHHS-SCCTTHHHHHH-THHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHc-CCHHHHHHHHH-HhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcccc
Confidence 34555788885 88887777663 33221 111234467788899999999999999999999999988 775420
Q ss_pred h--hcchhHh-HHHHHHHHHhhhhHHHHHHHHHHHHhCCCccCcHHHH-HHHHHHHHHHhcCHhHHHHHHHHHhhhcc
Q psy9376 190 L--KYSAKEY-FFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYK-LLRILIEHIEEQNVDGFTEAVKDYDSISR 263 (320)
Q Consensus 190 ~--~~~~~~~-~~~a~~~~l~~d~~~~~~A~~~y~~~~~~f~~s~e~~-~l~~l~~a~~~~d~~~~~~Ai~~ye~~~~ 263 (320)
. ....+.. +.-...+.+..+. -+...+ +++ +. ...-. ....++.|+..||...|+++++.++....
T Consensus 257 ~~~~~~n~~~ILkyLIpv~LLlG~-~P~~~l--l~k--~~---~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~ 326 (455)
T 3t5v_B 257 NQAITRNGTRILNYMIPTGLILGK-MVKWGP--LRP--FL---SQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLC 326 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC-CBCHHH--HGG--GS---CHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHcCC-CCCHHH--Hcc--cc---hHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHH
Confidence 0 0000100 0001122222110 000000 000 00 01122 13568889999999999999999987554
No 315
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.46 E-value=1.7e+02 Score=22.72 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q psy9376 97 SKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAAT 142 (320)
Q Consensus 97 ~kA~~l~~~~~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~ 142 (320)
.........+|--...|..|..-|..++.. |++.+|.+.|+.+++
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~-~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEAR-ENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
No 316
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=20.35 E-value=3.6e+02 Score=22.82 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHH-c----CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhH
Q psy9376 89 NEAAIDCLSKAIVIYTD-M----GRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATY 143 (320)
Q Consensus 89 ~~eA~~~~~kA~~l~~~-~----~~~~~aa~~~~~la~~y~~~l~~~~~Ai~~y~kA~~~ 143 (320)
.+.|..+|++|.++... . -+|-..+-++.-.--.|+-. +++++|+..-++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIl-n~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLL-GNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 36788999999998753 3 34555555555444456664 9999999998888764
Done!