RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9376
(320 letters)
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 249 bits (638), Expect = 3e-82
Identities = 86/273 (31%), Positives = 149/273 (54%), Gaps = 2/273 (0%)
Query: 9 EKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSG 68
EK+ + + + K +EA + +AA ++++ K+ N AG +F++AA+ K+G
Sbjct: 12 EKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG 71
Query: 69 TKHDAACNLLDAANCFKKTDN-EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDC 127
+ +A ++A CFK N A+D L AI I+T G+F A + EI E D
Sbjct: 72 NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL 131
Query: 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187
D KA++ YE A ++ ++S + +NKC +K A AL Y +A IY ++ ++S+ +
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191
Query: 188 SLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQ 246
L ++S K+YF + LC L D + A + ++ P F DSRE L+ LI+ + E
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251
Query: 247 NVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQV 279
+ + +E K++D+ RLD+W T+L +IK+ +
Sbjct: 252 DSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284
Score = 55.4 bits (133), Expect = 6e-09
Identities = 33/236 (13%), Positives = 67/236 (28%), Gaps = 39/236 (16%)
Query: 85 KKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144
E A D +A IY +A A+ + ++++A Y +A F
Sbjct: 29 DSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK-AGNEDEAGNTYVEAYKCF 87
Query: 145 KGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALC 204
K ++ +A L + + E+G + A + + A
Sbjct: 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147
Query: 205 HLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL 264
+ + + + +Y EA Y
Sbjct: 148 YAQDQ--SVALSNKCFIKCADLKALDGQYI------------------EASDIYS----- 182
Query: 265 DQWYTTVLLRIKKQVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAYTQYKANY 320
++ ++S+ + L ++S K+YF + LC L A +
Sbjct: 183 -------------KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 208 bits (531), Expect = 7e-66
Identities = 56/256 (21%), Positives = 100/256 (39%), Gaps = 5/256 (1%)
Query: 26 GGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFK 85
D A Y +AA FK AK+ A A+++ A H + + AA A K
Sbjct: 28 WKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK 87
Query: 86 KTDN-EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144
A+ + KA V+Y + G AA ++ E +D KAV Y+QAA F
Sbjct: 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVF 145
Query: 145 KGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALC 204
+ EE A + + K + Q +++A ++ + K+ + +
Sbjct: 146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205
Query: 205 HLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDYDSISRL 264
D + A + +I P F S + L L++ +EQ+ + + ++ +
Sbjct: 206 LHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR-SPLVTYM 263
Query: 265 DQWYTTVLLRIKKQVG 280
D Y + + +K G
Sbjct: 264 DNDYAKLAISLKVPGG 279
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 46.5 bits (111), Expect = 6e-06
Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 32/178 (17%)
Query: 28 NKIDEAIECYTRAANMFK-------MAKKWNNAGKA------FVEAANLHMKS------- 67
+ A+E Y + + + N G F A H +
Sbjct: 197 EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256
Query: 68 GTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETD 126
G + + N E A + + + + ++G + A+ ++ Y T
Sbjct: 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY-TL 315
Query: 127 CVDQEKAVEHYEQA-----ATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
+ A+E++ + + E+ + + L AH A + + +A++ E+
Sbjct: 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWS---LGNAHSA--IGGHERALKYAEQ 368
Score = 43.4 bits (103), Expect = 6e-05
Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 22/131 (16%)
Query: 31 DEAIECYTRAANMFK-------MAKKWNNAGKAFV------EAANLHMKS-------GTK 70
AIE + + + + +N G + + +AA + ++ G +
Sbjct: 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299
Query: 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD 129
A + N + + AI+ ++ + I ++G A+ ++ +
Sbjct: 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHS-AIGG 358
Query: 130 QEKAVEHYEQA 140
E+A+++ EQ
Sbjct: 359 HERALKYAEQH 369
Score = 36.9 bits (86), Expect = 0.006
Identities = 17/194 (8%), Positives = 45/194 (23%), Gaps = 37/194 (19%)
Query: 22 ITKVGGNKIDEAIECYTRAANMFK-------MAKKWNNAGKAFVEAAN-----------L 63
++ +G + + M + G+ A + +
Sbjct: 16 VSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75
Query: 64 HMKSGTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEI 122
+ + N + D A+ + + M AK +
Sbjct: 76 QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135
Query: 123 YETDCVDQEKAVEHYEQA-----ATYFKGEESNSSAN------------KCLLKVAHHAA 165
+ ++A E+ + E + N
Sbjct: 136 LKVMG-RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194
Query: 166 LLQNYNKAIQIYEE 179
+ + +A++ Y+E
Sbjct: 195 VKEALTRAVEFYQE 208
Score = 35.0 bits (81), Expect = 0.028
Identities = 11/113 (9%), Positives = 27/113 (23%), Gaps = 10/113 (8%)
Query: 76 NLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVE 135
+ + + + + E D V
Sbjct: 11 ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAG-DCRAGVA 69
Query: 136 HYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAI-------QIYEEVG 181
++ A + SA ++ + L +YNKA+ + + +
Sbjct: 70 FFQAAIQAGTEDLRTLSA--IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 44.5 bits (106), Expect = 2e-05
Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 29/201 (14%)
Query: 9 EKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFK-------MAKKWNNAGKA----- 56
+ + N + A++ Y ++ + + N G
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197
Query: 57 -FVEAANLHMKS-------GTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107
F +A H + G K + N + + E A + K +++ +
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257
Query: 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQA-----ATYFKGEESNSSAN--KCLLKV 160
+ A+ ++ Y T D EKA++++ + + E + + +
Sbjct: 258 DRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316
Query: 161 AHHAALLQNYNKAIQIYEEVG 181
+H + K ++I EVG
Sbjct: 317 GNHDQAMHFAEKHLEISREVG 337
Score = 38.0 bits (89), Expect = 0.003
Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 18/160 (11%)
Query: 29 KIDEAIECYTRAANMFK-------MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAA 81
DEAI C R ++ + A+ N G + D D
Sbjct: 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK-SFGCPGPQDTGEFPEDVR 156
Query: 82 NCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAA 141
N + A+D + + + T +G + + + + AV +EQ
Sbjct: 157 NALQA-----AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRL 210
Query: 142 TYFKGEESNSSANKCL--LKVAHHAALLQNYNKAIQIYEE 179
K ++ + L A+ L + A + Y++
Sbjct: 211 LIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEYYKK 248
Score = 35.7 bits (83), Expect = 0.015
Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 40/190 (21%)
Query: 29 KIDEAIECYTRAANMFK-----MAKKWNNAGKA------FVEAANLHMKS-------GTK 70
+ + A + ++ ++ G A + +A H G +
Sbjct: 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79
Query: 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVI--------------------YTDMGRF 109
A + N K + + AI C + + I Y G+
Sbjct: 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139
Query: 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN 169
T + + AV+ YE+ + ++ + + + LL N
Sbjct: 140 FGCPGPQDTGEFPEDVRN-ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198
Query: 170 YNKAIQIYEE 179
+ A+ +E+
Sbjct: 199 FRDAVIAHEQ 208
Score = 32.6 bits (75), Expect = 0.14
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 83 CFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQA-- 140
K D A + A+ + T+ T++A + Q + Y D KA+E++
Sbjct: 15 LCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQ-LGNAYFYLH-DYAKALEYHHHDLT 71
Query: 141 ---ATYFKGEESNSSAN--KCLLKVAHHAALLQNYNKAIQIYEEVG 181
+ E+ +S N L + + + + + I E+
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 5e-05
Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 71/230 (30%)
Query: 71 HDAACNLLDAANCFKK-----TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYET 125
A L + F K T+ AA D + + G+F + ++ + E
Sbjct: 27 FFIASQLQE---QFNKILPEPTEGFAADDEPTTPAELV---GKFL----GY--VSSLVEP 74
Query: 126 DCVDQ-----EKAVEHYEQAATYFKGEESNSSANKCL----LKVAHHAALLQNYNKAIQI 176
V Q + +E Y +G + ++ A K L + L++NY A +
Sbjct: 75 SKVGQFDQVLNLCLTEFEN--CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 177 YEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAF--QDSRE-- 232
+ +S+L FRA NA + F Q + +
Sbjct: 133 AKRPFDKKSNSAL---------FRAV---------GEGNA-----QLVAIFGGQGNTDDY 169
Query: 233 ----------YK-LLRILIEHIEEQNVDGFTEAVKDYDSI-SR-LD--QW 267
Y L+ LI+ E + D + + ++ L+ +W
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLNILEW 218
Score = 40.8 bits (95), Expect = 5e-04
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 40/125 (32%)
Query: 6 LVCEKQLAAAL-----LRVVFITKVGGNKIDEAIE-------CYTRAA-NMFKMAKKWN- 51
L LA + + VVF G + A+ Y A N ++A ++
Sbjct: 1770 LAS---LADVMSIESLVEVVFYR---GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 52 --------NAGKA---FVEAANLHMK------SGTKH--DAACNLLDAANCFKKTDNEAA 92
GK VE N +++ +G D N+L+ +K D
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL-QKIDIIEL 1882
Query: 93 IDCLS 97
LS
Sbjct: 1883 QKSLS 1887
Score = 34.3 bits (78), Expect = 0.063
Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 70/223 (31%)
Query: 17 LRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGT-KHDAAC 75
L + F G +I E Y+ A +F+ + + N H S T + +
Sbjct: 1672 LTIHF-GGEKGKRIREN---YS--AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-- 1723
Query: 76 NLLDAANCFKKTDN-EAAIDCLSKAIVIYTDM-----------------GRFT-MAAKHH 116
LL A T + A+ + KA + D+ G + +A+
Sbjct: 1724 GLLSA------TQFTQPALTLMEKAA--FEDLKSKGLIPADATFAGHSLGEYAALAS--- 1772
Query: 117 QTIAEIYET-DCVD--------QEKAVEHYEQAATYFK------GEESNSSANKCLLKVA 161
+A++ V+ + AV E + + G + S + + L V
Sbjct: 1773 --LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 162 HHAA-----LLQ--NYNKAIQIYEEV--GRTS-LD--SSLLKY 192
L++ NYN Q Y V G LD +++L +
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQY--VAAGDLRALDTVTNVLNF 1871
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 6e-05
Identities = 41/363 (11%), Positives = 103/363 (28%), Gaps = 97/363 (26%)
Query: 8 CEKQ-LAAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMK 66
K +A + ++C +F W N L M
Sbjct: 161 SGKTWVALDVCL------------SYKVQC-KMDFKIF-----WLNLKNCNSPETVLEML 202
Query: 67 SGTKHDAACNLLDAANCFK--KTDNEAAIDCLS---------KAIVIYTD------MGRF 109
+ N ++ K + L +++ + F
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 110 TMAAKHHQTIAEIYETDCVD----QEKAVEHYEQAATYFKGEESNSSANKCL-------- 157
++ K T TD + +++H+ +E S K L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLP 319
Query: 158 --------LKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCID 209
+++ A +++ ++ V L + + ++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---------------ESSLN 364
Query: 210 VINAHNAIDRYK--TIYPAFQDSR-EYKLLRILIEHIEEQNVDGFTEAVKDYDSISRLDQ 266
V+ + +++P + LL ++ + + +V + Y S +++
Sbjct: 365 VLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEK 419
Query: 267 W-----YT--TVLLRIKKQV-GRTSLDSSLL-KYSAKEYFFRAALCHLCIDVINAYTQYK 317
+ ++ L +K ++ +L S++ Y+ + F L +D QY
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------QYF 473
Query: 318 ANY 320
++
Sbjct: 474 YSH 476
Score = 36.8 bits (84), Expect = 0.009
Identities = 32/213 (15%), Positives = 66/213 (30%), Gaps = 51/213 (23%)
Query: 82 NCFKKTD-NEAAIDCLSKAIV--IYTDMGRFTMAAKHHQTIAEIY--ETDCVDQEKAVEH 136
NC K T E++++ L A ++ + F +A + + + D V
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 137 YEQAATYFKGEESNSS---------ANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187
+ + K + ++ K + A H +++ +YN +T
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP--------KTFDSD 462
Query: 188 SLLKYSAKEYFFRAALCHLC---------------ID-------VINAHNAIDRYKTIYP 225
L+ +YF+ HL +D + + A + +I
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 226 AFQDSREYKLLRILIEHIEEQNVDGFTEAVKDY 258
Q + YK +I + N + V
Sbjct: 523 TLQQLKFYK------PYICD-NDPKYERLVNAI 548
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 41.4 bits (97), Expect = 3e-04
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 29/169 (17%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
NKI EA ++++ A+ F + + + A A+ AA L + H
Sbjct: 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---HLP 443
Query: 74 ACNLLDAANCFKKTDN-EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEK 132
L + N A + L + ++ + + + D +
Sbjct: 444 YLFL---GMQHMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAF-NKSDMQT 493
Query: 133 AVEHYEQAATYFKGEESNSSAN-KCLLKVAHHAALLQNYNKAIQIYEEV 180
A+ H++ A K +SN + H L+ Y+ AI +
Sbjct: 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542
Score = 32.9 bits (75), Expect = 0.14
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 23/129 (17%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGT-KHD 72
I A E + + A F A L K+ + +
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 73 AACNLLDAANCFKKTDN-EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQE 131
A + + ++K +AAID L++ +++ T+ A H IA +Y
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND------ANVHTAIALVYL-HKKIPG 567
Query: 132 KAVEHYEQA 140
A+ H ++
Sbjct: 568 LAITHLHES 576
Score = 32.5 bits (74), Expect = 0.20
Identities = 17/194 (8%), Positives = 51/194 (26%), Gaps = 55/194 (28%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
+ ++ + K + A + F ++ M +
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS--STMDP--QFGP 408
Query: 74 ACNLLDAANCFKKTDN-EAAIDCLSKAI--------------VIYTDMGRFTMAAKHHQT 118
A A+ F + AI + A + + +G +A ++ Q+
Sbjct: 409 AWIGF--AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466
Query: 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYE 178
+++ D + E F + ++ + ++ A+ + +
Sbjct: 467 SYALFQYD------PLLLNELGVVAFNKSDMQTA--------------INHFQNALLLVK 506
Query: 179 EVGRTSLDSSLLKY 192
+ +
Sbjct: 507 KTQSNEKPWAATWA 520
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 40.0 bits (94), Expect = 7e-04
Identities = 13/136 (9%), Positives = 39/136 (28%), Gaps = 21/136 (15%)
Query: 31 DEAIECYTRAANMFK-------MAKKWNNAGKAFV------EAANLHMKS-------GTK 70
+ A E Y + + + A+ + G + +A + H+K +
Sbjct: 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303
Query: 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD 129
N + +++ A+ K + I ++G + ++++ +
Sbjct: 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363
Query: 130 QEKAVEHYEQAATYFK 145
+
Sbjct: 364 YSTNNSIMSENTEIDS 379
Score = 40.0 bits (94), Expect = 7e-04
Identities = 28/201 (13%), Positives = 65/201 (32%), Gaps = 29/201 (14%)
Query: 9 EKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFK-------MAKKWNNAGKA----- 56
+ V + + + A++ Y ++ + + N G
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201
Query: 57 -FVEAANLHMKS-------GTKHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMG 107
F +A H + G K + N + + E A + K +++ +
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261
Query: 108 RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQA-----ATYFKGEESNSSAN--KCLLKV 160
+ A+ ++ Y T D EKA++++ + + E + + +
Sbjct: 262 DRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320
Query: 161 AHHAALLQNYNKAIQIYEEVG 181
+H + K ++I EVG
Sbjct: 321 GNHDQAMHFAEKHLEISREVG 341
Score = 38.8 bits (91), Expect = 0.001
Identities = 22/158 (13%), Positives = 49/158 (31%), Gaps = 14/158 (8%)
Query: 29 KIDEAIECYTRAANMFK-------MAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAA 81
DEAI C R ++ + A+ N G + D +
Sbjct: 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK-SFGCPGPQDVGEFPEEVR 160
Query: 82 NCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAA 141
+ + A+D + + + T +G + + + + AV +EQ
Sbjct: 161 DALQA-----AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRL 214
Query: 142 TYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
K ++ + + + L + A + Y++
Sbjct: 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252
Score = 32.7 bits (75), Expect = 0.13
Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 24/118 (20%)
Query: 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQ----------------- 130
EA+ L+ G + ++ D
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63
Query: 131 EKAVEHYEQA-----ATYFKGEESNSSAN--KCLLKVAHHAALLQNYNKAIQIYEEVG 181
KA+E++ + E+ +S N L + + + + + I E+
Sbjct: 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121
Score = 32.3 bits (74), Expect = 0.19
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 2/150 (1%)
Query: 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNE 90
+A+E + + + KA N G +A + ++ +++
Sbjct: 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 123
Query: 91 AAI-DCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEES 149
L +Y G+ E + AV+ YE+ +
Sbjct: 124 VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD-ALQAAVDFYEENLSLVTALGD 182
Query: 150 NSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
++ + + + LL N+ A+ +E+
Sbjct: 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212
Score = 31.5 bits (72), Expect = 0.35
Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 41/181 (22%)
Query: 31 DEAIECYTRAANMFK-------MAKKWNNAGKAFV------EAANLHMKS-------GTK 70
+A+ + + + K + ++N G A++ A+ + K+ +
Sbjct: 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263
Query: 71 HDAACNLLDAANCFKKT-DNEAAIDCLSKAIVI--------------------YTDMGRF 109
A + N + D E AID K + I YT +G
Sbjct: 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323
Query: 110 TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQN 169
A + EI + + S S+ N + + + L
Sbjct: 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383
Query: 170 Y 170
Sbjct: 384 V 384
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 38.8 bits (91), Expect = 8e-04
Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 11/169 (6%)
Query: 22 ITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAA 81
+ + + ++ +++ A +F KSG L
Sbjct: 15 AQALLAHPATAS-GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73
Query: 82 NCFKKT-DNEAAIDCLSKAIVIYTDMG-RFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQ 139
+ + +AA C + + + A+ + +A + D A + YE+
Sbjct: 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL-HFGDLAGARQEYEK 132
Query: 140 AATYFKGEESNSSANKCLLKVAH-HAAL------LQNYNKAIQIYEEVG 181
+ Y + + + + Q++ +A I+ E+
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181
Score = 31.1 bits (71), Expect = 0.36
Identities = 11/115 (9%), Positives = 27/115 (23%), Gaps = 22/115 (19%)
Query: 31 DEAIECYTRAANMFK--------MAKKWNNAGKA------FVEAANLHMKS-------GT 69
D A C+ + + A + KS
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 70 KHDAACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIY 123
+ AC + ++ + A +A I+ ++ + + +
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE 197
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 39.0 bits (91), Expect = 0.002
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 20/152 (13%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
+ ++ +A ++++ ++ + A N
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYS------------------IRTIQSLFVIAGNYDDFK 196
Query: 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147
+ A+ L A+ + D+ A IA Y+ D + AVEH+++AA + +
Sbjct: 197 HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREK 255
Query: 148 ESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
+ K L ++ KA Q EE
Sbjct: 256 VPDLLP-KVLFGLSWTLCKAGQTQKAFQFIEE 286
Score = 35.6 bits (82), Expect = 0.018
Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 26/172 (15%)
Query: 28 NKIDEAIECYTRAANMFK-------MAKKWNNAGKA-------------FVEAANLHMKS 67
D+A+ A + +A N + F +AA + +
Sbjct: 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255
Query: 68 GTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDC 127
+ K + A + + + T K ++ + +
Sbjct: 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS-----HKFYKELFLFLQA-V 309
Query: 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
+ +YF+ + ++ C A ++ +A Y +
Sbjct: 310 YKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361
Score = 27.5 bits (61), Expect = 5.8
Identities = 20/182 (10%), Positives = 47/182 (25%), Gaps = 30/182 (16%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAG----------KAFVEAANLHMKSGTKHDAACNL 77
+ +A + ++ + + ++ G + L
Sbjct: 26 FSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85
Query: 78 LDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQE------ 131
KK L + D + A +++ + D E
Sbjct: 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF 145
Query: 132 -------------KAVEHYEQAATYFKGEESNSSAN-KCLLKVAHHAALLQNYNKAIQIY 177
++ H QA ++ S + L +A + ++Y+KA+
Sbjct: 146 KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHL 205
Query: 178 EE 179
E
Sbjct: 206 EA 207
Score = 27.5 bits (61), Expect = 6.3
Identities = 21/180 (11%), Positives = 53/180 (29%), Gaps = 30/180 (16%)
Query: 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANL--HMKSGTKHDAACNLLDAANCFKK-- 86
E + Y + ++ + K G ++A +++
Sbjct: 69 LEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAE 128
Query: 87 ------TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQ---------- 130
+D+ + K Y M + ++ H +IY+ +
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Query: 131 ----------EKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
+KA+ H E A +++ LL +A+ + A++ +++
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 37.1 bits (87), Expect = 0.002
Identities = 22/159 (13%), Positives = 53/159 (33%), Gaps = 29/159 (18%)
Query: 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT-DN 89
+A+ + + + K + G K + N + +
Sbjct: 26 RDAVIAHEQRLLIAK--------------------EFGDKAAERIAYSNLGNAYIFLGEF 65
Query: 90 EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQA-----ATYF 144
E A + K +++ + + A+ ++ Y T D EKA++++ +
Sbjct: 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELKD 124
Query: 145 KGEESNSSAN--KCLLKVAHHAALLQNYNKAIQIYEEVG 181
+ E + + + +H + K ++I EVG
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163
Score = 35.6 bits (83), Expect = 0.009
Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQA-----AT 142
+ A+ + ++I + G + + Y + E A E+Y++
Sbjct: 24 NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQL 82
Query: 143 YFKGEESNSSAN--KCLLKVAHHAALLQNYNKAIQIYEEVG 181
+ E+ S + + + + + K + I +E+
Sbjct: 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 36.1 bits (84), Expect = 0.009
Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 45/179 (25%)
Query: 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHD 72
G+K + A ++A + F + + + A A+ AA L H
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HL 160
Query: 73 AACNLLDAANCFKKTDN-EAAIDCLSKAIVI-------YTDMGRFTMAAKHHQTIAEIYE 124
+ + T+N + A S+A+ I ++G + A +
Sbjct: 161 PMLYI---GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG---VVAFQNG------- 207
Query: 125 TDCVDQEKAVEHYEQA---ATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
+ + A + + A E + L + H L+ Y +A+ + +
Sbjct: 208 ----EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 35.9 bits (83), Expect = 0.017
Identities = 24/157 (15%), Positives = 42/157 (26%), Gaps = 19/157 (12%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86
D AI+ Y A + K G +A L +S +
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS----------QDPTQLDE 441
Query: 87 TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146
AAI L+KA + + +A++ ++A+E +E +A
Sbjct: 442 EKFNAAIKLLTKACELDPRS------EQAKIGLAQLKL-QMEKIDEAIELFEDSAIL-AR 493
Query: 147 EESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRT 183
+ A L+ E
Sbjct: 494 TMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLAR 530
Score = 31.2 bits (71), Expect = 0.43
Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 43/180 (23%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
E + + +A M+ + + + NA + F +A +L+ ++
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYP 346
Query: 74 ACNLLDAANCFKKTDN-EAAIDCLSKAI--------------VIYTDMGRFTMAAKHHQT 118
L A K + ++ I TD G F A K +
Sbjct: 347 YIQL---ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403
Query: 119 IAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK--CLLKVAHHAALLQNYNKAIQI 176
+ ++ + H K +++ L A ++ KA ++
Sbjct: 404 AKRL------EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457
Score = 30.8 bits (70), Expect = 0.57
Identities = 19/205 (9%), Positives = 45/205 (21%), Gaps = 61/205 (29%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAA------ 81
N + +A + N+ + + A
Sbjct: 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKE--------NSQEFFKFFQKAVDLNPE 308
Query: 82 ---------NCFKKTDN-EAAIDCLSKAI--------------VIYTDMGRFTMAAKHHQ 117
+ + + A + KA + G+FT +
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368
Query: 118 TIAEIYETD----------CVDQ---EKAVEHYEQA---------ATYFKGE-ESNSSAN 154
+ T D+ + A++ Y+ A G ++
Sbjct: 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428
Query: 155 KCLLKVAHHAALLQNYNKAIQIYEE 179
+ +N AI++ +
Sbjct: 429 ARQSSQDPTQLDEEKFNAAIKLLTK 453
Score = 30.8 bits (70), Expect = 0.68
Identities = 36/255 (14%), Positives = 67/255 (26%), Gaps = 33/255 (12%)
Query: 29 KIDEAIECYTRAANM-----FKMAKKWNNAGKAFVEAANLHM---------KSGTKHDAA 74
+ + A + N G F A N + +
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 75 CNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKA 133
+ + + C+ T D E I+ +KA+ I D +K A E + A
Sbjct: 62 YSNI--SACYISTGDLEKVIEFTTKALEIKPDH------SKALLRRASANE-SLGNFTDA 112
Query: 134 VEHYEQAATY--FKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLK 191
+ + F G + L K A ++ N+ + E G L S+
Sbjct: 113 MFDLSVLSLNGDFDGASIEPMLERNLNKQA-----MKVLNENLSKDEGRGSQVLPSNTSL 167
Query: 192 YSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGF 251
S F N A + + L + + ++ D +
Sbjct: 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL--VANDLLTKSTDMY 225
Query: 252 TEAVKDYDSISRLDQ 266
+ L +
Sbjct: 226 HSLLSANTVDDPLRE 240
Score = 28.1 bits (63), Expect = 4.7
Identities = 23/176 (13%), Positives = 46/176 (26%), Gaps = 36/176 (20%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
A E + +A A + K+ + F E +
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL---PEV 380
Query: 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVI-------YTDMGRFTMAAKHHQTIAEIYET 125
A D + AI A + + +G A + T
Sbjct: 381 PTFF---AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437
Query: 126 DCV--DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
A++ +A + S K L ++ ++AI+++E+
Sbjct: 438 QLDEEKFNAAIKLLTKACEL----DPRSEQAKIGLAQLKLQ--MEKIDEAIELFED 487
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 35.6 bits (82), Expect = 0.018
Identities = 16/125 (12%), Positives = 26/125 (20%), Gaps = 26/125 (20%)
Query: 30 IDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAAC 75
+ A A+ A LH +A
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAVA 61
Query: 76 NLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVE 135
L + + + A L +A + + E D E A
Sbjct: 62 RL--GRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWLGHALE-DAGQAEAAAA 112
Query: 136 HYEQA 140
Y +A
Sbjct: 113 AYTRA 117
Score = 33.3 bits (76), Expect = 0.12
Identities = 18/151 (11%), Positives = 35/151 (23%), Gaps = 32/151 (21%)
Query: 12 LAAALLRVVFITKVGGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAF 57
LA A L + R + ++ A
Sbjct: 29 LADAELGM--------GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 58 VEAANLHMKSGTKHDAACNLLDAANCFKKTDN-EAAIDCLSKAIVIYTDMGRFT---MAA 113
+A++ + A L + + EAA ++A + + T +
Sbjct: 81 QQASDAAPEH---PGIALWL---GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134
Query: 114 KHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144
+ + AV A F
Sbjct: 135 RRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 35.6 bits (82), Expect = 0.020
Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 25/152 (16%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
++ ++AI + RA +F+ + + +A+ +H K G
Sbjct: 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG------------------- 278
Query: 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147
+ A + SK + G + + E ++ E + + + +
Sbjct: 279 KIDKAHEYHSKGMAYSQKAGD-----VIYLSEFEFLKS-LYLSGPDEEAIQGFFDFLESK 332
Query: 148 ESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
+ + VA + +N+ KA + +
Sbjct: 333 MLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Score = 30.2 bits (68), Expect = 0.86
Identities = 15/156 (9%), Positives = 47/156 (30%), Gaps = 16/156 (10%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWN-NAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86
+ +++ +A ++K + +N + A + DA + A + +
Sbjct: 157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216
Query: 87 TDNEAAI-DCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145
+ L + ++ A + + ++ E++ YF
Sbjct: 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-------EESNILPSLPQAYF- 268
Query: 146 GEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVG 181
+ K+ + ++K + ++ G
Sbjct: 269 ------LITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 34.8 bits (81), Expect = 0.023
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 23/161 (14%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAF---------VEAANLHMKSGTKHDAACNLL 78
+ DEAIE Y +A + K NN A + N ++ G + A ++
Sbjct: 19 RQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78
Query: 79 DAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHY 137
+ F + + + L K I Y + H+T A+I T + EK ++
Sbjct: 79 --SKSFARIGNAYHKLGDLKKTIEYYQK------SLTEHRT-ADIL-TKLRNAEKELKKA 128
Query: 138 EQAATYFKGEESNSSANK--CLLKVAHHAALLQNYNKAIQI 176
E A Y E++ + + + ++ Y + I+
Sbjct: 129 EAEA-YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 34.9 bits (81), Expect = 0.026
Identities = 18/170 (10%), Positives = 44/170 (25%), Gaps = 27/170 (15%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
+ AI+ Y A + F + A + +
Sbjct: 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD---PKV 144
Query: 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEK 132
L + + A K + + + + A + Q
Sbjct: 145 FYEL---GQAYYYNKEYVKADSSFVKVLELKPN----IYIGYLWRARANAAQDPDTKQGL 197
Query: 133 AVEHYEQAATYF--KGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
A +YE+ G + + +A++ + ++ KA ++ +
Sbjct: 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
Score = 28.4 bits (64), Expect = 3.2
Identities = 24/198 (12%), Positives = 46/198 (23%), Gaps = 49/198 (24%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFV-----EAANLHMKSGTK--------HDA 73
N EAIE + + +N + + A +++
Sbjct: 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76
Query: 74 ACNLLDAANCFKKT-DNEAAIDCLSKAI--------------VIYTDMGRFTMAAKHHQT 118
K + AI A+ + + G F +A ++ +
Sbjct: 77 FEYY---GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133
Query: 119 IAEIYETDCVDQ-------------EKAVEHYEQAA----TYFKGEESNSSANKCLLKVA 161
TD KA + + + G + AN
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193
Query: 162 HHAALLQNYNKAIQIYEE 179
Y K I++
Sbjct: 194 KQGLAKPYYEKLIEVCAP 211
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 34.8 bits (79), Expect = 0.041
Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 29/192 (15%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
I+EA+ Y +A A++ + K A + EA + +
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82
Query: 74 ACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKA 133
N L D + A+ C ++AI I A H +A I++ D + +A
Sbjct: 83 MGNTLKEMQ-----DVQGALQCYTRAIQINPAF------ADAHSNLASIHK-DSGNIPEA 130
Query: 134 VEHYEQAATYFKGEESNSSANK--CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLK 191
+ Y A K + ++ N CL V + K + I + + S+
Sbjct: 131 IASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHP 189
Query: 192 YSAKEYFFRAAL 203
+ + Y
Sbjct: 190 HHSMLYPLSHGF 201
Score = 30.9 bits (69), Expect = 0.66
Identities = 33/239 (13%), Positives = 63/239 (26%), Gaps = 28/239 (11%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEA-------ANLHMK 66
K+ EA+ Y A N K + A + + A A+ H
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 67 SGTKHDAACNLLDAANCFKK--TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYE 124
+ H + N+ +A ++ D + +T + + + I
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
Query: 125 TDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184
DQ + + + K + + + L + YE
Sbjct: 177 ----DQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLK 232
Query: 185 LDSSLLKYSAKEYFFRA-ALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEH 242
L L+ F HL + HN Y D ++++ E
Sbjct: 233 LSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA 291
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.044
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 21/41 (51%)
Query: 275 IKKQVGRTSLDSSLLKY---SAKEYFFRAALCHLCIDVINA 312
+KK L +SL Y SA AL I A
Sbjct: 22 LKK------LQASLKLYADDSA------PAL------AIKA 44
Score = 28.8 bits (63), Expect = 1.8
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 17/39 (43%)
Query: 178 EEVGRTSLDSSLLKY---SAKEYFFRAALCHLCIDVINA 213
+ + + L +SL Y SA AL I A
Sbjct: 20 QALKK--LQASLKLYADDSA------PAL------AIKA 44
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 33.9 bits (78), Expect = 0.057
Identities = 33/266 (12%), Positives = 75/266 (28%), Gaps = 46/266 (17%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
++ +A+ + A A +F K A + L K D
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL------KMDF 93
Query: 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVIYTD--MGRFTMAAKHHQTIAEIYETDCV-- 128
L + K + A D K + + + + + +
Sbjct: 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153
Query: 129 ----DQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTS 184
D A+ ++ E + A KAI + +
Sbjct: 154 FGSGDYTAAIAFLDKIL------EVCVWDAELRELRAECFIKEGEPRKAISDLKAA--SK 205
Query: 185 LDSSLLKYSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSRE-YKLLRILIEHI 243
L + + + ++ + L + D + + + + + YK ++ L + I
Sbjct: 206 LKND----NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261
Query: 244 EEQNVDG----FTEAVKDYDSISRLD 265
E +T+A Y+S+ + +
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTE 287
Score = 30.8 bits (70), Expect = 0.62
Identities = 31/207 (14%), Positives = 58/207 (28%), Gaps = 45/207 (21%)
Query: 29 KIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTD 88
K+DEA + + + + E + + A N F D
Sbjct: 109 KLDEAEDDFKKVLKS----------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158
Query: 89 NEAAIDCLSKAIVI--------------YTDMGRFTMAAKHHQTIAEIYETDCV------ 128
AAI L K + + + G A + +++ +
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 129 -------DQEKAVEHYEQAATY---FKGEESNSSANKCLLKVAHHAALL---QNYNKAIQ 175
D E ++ + K ++ K L K+ A L Y A
Sbjct: 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278
Query: 176 IYEEVGRTSLDSSLLKYSAKEYFFRAA 202
YE V + + S+ +Y+ +
Sbjct: 279 KYESVMK--TEPSIAEYTVRSKERICH 303
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 33.0 bits (76), Expect = 0.11
Identities = 30/208 (14%), Positives = 58/208 (27%), Gaps = 45/208 (21%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
K+DEA + + + + E + + A + F
Sbjct: 85 GKLDEAEDDFKKVLKS----------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134
Query: 88 DNEAAIDCLSKAIVI--------------YTDMGRFTMAAKHHQTIAEIYETDCV----- 128
D AAI L K + + + G A + +++ +
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194
Query: 129 --------DQEKAVEHYEQAATY---FKGEESNSSANKCLLKVAHHAALLQN---YNKAI 174
D E ++ + K ++ K L K+ A L Y A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 175 QIYEEVGRTSLDSSLLKYSAKEYFFRAA 202
YE V + + S+ +Y+ +
Sbjct: 255 SKYESVMK--TEPSVAEYTVRSKERICH 280
Score = 30.3 bits (69), Expect = 0.74
Identities = 20/178 (11%), Positives = 43/178 (24%), Gaps = 39/178 (21%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
++ +A+ + A A +F K A + L K D
Sbjct: 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL------KMDF 70
Query: 74 ACNLLDAANCFKKT-DNEAAIDCLSKAIVI----------YTDMGRFTMAAKHHQTIAEI 122
L + K + A D K + + + + + +
Sbjct: 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130
Query: 123 YETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
++ D A+ ++ + + L KAI +
Sbjct: 131 FDGA--DYTAAITFLDKILEV----CVWDAELRELRAECFIK--EGEPRKAISDLKAA 180
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 32.3 bits (73), Expect = 0.19
Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 20/153 (13%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
+ A C++ A K N + +++ + + + +++D+ K
Sbjct: 151 GDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQ-----LQTDSGDEHSRHVMDSVRQAKL- 204
Query: 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147
A+ + +G ++ + + ++A+ Y QA +
Sbjct: 205 ----AVQMDVLDGRSWYILGNAYLSLYFNT------GQNPKISQQALSAYAQAEKVDRKA 254
Query: 148 ESNSSA--NK--CLLKVAHHAALLQNYNKAIQI 176
SN N+ + L+ +++A +
Sbjct: 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287
Score = 28.4 bits (63), Expect = 3.1
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 106 MGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAA 165
MGR +M A + + + Q Y +YF+ + K
Sbjct: 30 MGRGSMMADEEEEAKHVLQKL---QGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEK 86
Query: 166 LLQNYNKAIQIYEE 179
LQ + + +
Sbjct: 87 TLQQMEEVLGSAQV 100
Score = 27.3 bits (60), Expect = 7.5
Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 35/155 (22%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86
++++ ++ A+ GKA +
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDY----------------------- 118
Query: 87 TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKG 146
+ A LSKA+ + ++ + + E+Y D A + A T+ K
Sbjct: 119 --SPEAEVLLSKAVKLEPEL------VEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN 169
Query: 147 EES--NSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
+ S N S L+ ++ +++ +
Sbjct: 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 31.6 bits (72), Expect = 0.24
Identities = 17/182 (9%), Positives = 46/182 (25%), Gaps = 52/182 (28%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
A++ ++ + ++ N G +
Sbjct: 20 KDWKGALDAFSAVQDPH--SRICFNIGCMY--------------------------TILK 51
Query: 88 DNEAAIDCLSKAI--------------VIYTDMGRFTMAAKH-HQTIAEIYETDCVDQEK 132
+ A +++I ++Y ++ +A K + + ++ +D
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID--- 108
Query: 133 AVEHYEQAATYFKGEESNSSANK--CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLL 190
Y+ FK N K + A + E + +D ++
Sbjct: 109 ----YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164
Query: 191 KY 192
Sbjct: 165 CV 166
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 31.3 bits (71), Expect = 0.32
Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 37/177 (20%)
Query: 29 KIDEAIECYTRAANM---FKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFK 85
+ +A+ + + + W N K ++ L + + N A +K
Sbjct: 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78
Query: 86 KT----------------------DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIY 123
+ + A+ K + + D + + Y
Sbjct: 79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD------NLAANIFLGNYY 132
Query: 124 ETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
++K +E + S + + Y KA ++V
Sbjct: 133 YLTAEQEKKKLETDYKKL------SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
Score = 28.6 bits (64), Expect = 2.1
Identities = 16/127 (12%), Positives = 29/127 (22%), Gaps = 25/127 (19%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
D+A Y A M + +A + + + L + A
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLA 123
Query: 74 ACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKA 133
A L + ++ K + T M EKA
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM------QYARYRDGLSKL-FTTRYEKA 176
Query: 134 VEHYEQA 140
++
Sbjct: 177 RNSLQKV 183
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 31.4 bits (71), Expect = 0.39
Identities = 24/198 (12%), Positives = 40/198 (20%), Gaps = 49/198 (24%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLHMKSGTKHDAACN-----LLDAA 81
++ D+AIE +A A G + M + A
Sbjct: 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320
Query: 82 NCFKKT----------------------DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTI 119
KK E A K H
Sbjct: 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT---PVAKQLLHLRY 377
Query: 120 AEIYETDCVDQEKAVEHYEQA--------ATYFKGEESNSSANKCLLKVAHHAALLQN-- 169
++KA+ H+ + ++ A L K + L
Sbjct: 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437
Query: 170 --------YNKAIQIYEE 179
+A + E
Sbjct: 438 FLQELNEKMQQADEDSER 455
Score = 30.3 bits (68), Expect = 1.0
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 27 GNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86
D+AI + + + +++ + A + + A ++L A +
Sbjct: 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVL--AFLQEL 442
Query: 87 T-DNEAAIDCLSKAI 100
+ A + + +
Sbjct: 443 NEKMQQADEDSERGL 457
Score = 29.5 bits (66), Expect = 1.6
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 33/158 (20%)
Query: 24 KVGGNKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAAN 82
K GGN+ + A C+ +A K + + A N
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP----------------- 190
Query: 83 CFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAAT 142
++ AID L +AI + D + ++ + + E+A
Sbjct: 191 ------SQNAIDPLRQAIRLNPD---NQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL- 240
Query: 143 YFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
E L A +KAI++ ++
Sbjct: 241 -----EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273
Score = 29.1 bits (65), Expect = 1.8
Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 33/179 (18%)
Query: 28 NKIDEAIECYTRA------------------ANMFKMAKKWNNAGKAFVEAANLHMKSGT 69
AI+ +A M + ++ K EA
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV-- 246
Query: 70 KHDAACNLLDAANCFKKTDNEAAIDCLSKAIVI-------YTDMGRFTMAAKHHQTIAEI 122
D + A +K + + AI+ L KA+ + +G A + +
Sbjct: 247 -TDVLRSA--AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQ--VMNL 301
Query: 123 YETDCVDQEKAVEHYEQAATYF-KGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
E + K +E A + K +E+N + + +A AL Y +A +++
Sbjct: 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360
Score = 28.0 bits (62), Expect = 4.3
Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 22/155 (14%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANL---HMKSGTKHDAACNLLDAANCF 84
+ + A+EC +A + + ++ V N + G D + +
Sbjct: 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124
Query: 85 KKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144
+K + I+ + + G + +Q E+A +E+A
Sbjct: 125 EKFSSPYRIESPE----LDCEEGWTRLKCGGNQ------------NERAKVCFEKAL--- 165
Query: 145 KGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
+ + N L ++ AI +
Sbjct: 166 EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 31.3 bits (70), Expect = 0.39
Identities = 16/170 (9%), Positives = 39/170 (22%), Gaps = 15/170 (8%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK- 86
+ I + N AN++ ++G +
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188
Query: 87 -TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFK 145
+ E + R+ + EI +Y++ K
Sbjct: 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248
Query: 146 GEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAK 195
E + Y KA ++ + + +L+ ++
Sbjct: 249 LEYEEAEIEDA-------------YKKASFFFDILEMHAYKEALVNKISR 285
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 31.4 bits (72), Expect = 0.43
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 28/128 (21%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
ID AI+ Y RA AN K A + A L D+
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH---ADS 307
Query: 74 ACNLLDAANCFKKTDN-EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEK 132
NL AN ++ N E A+ KA+ ++ + A H +A + + ++
Sbjct: 308 LNNL---ANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQ-QQGKLQE 357
Query: 133 AVEHYEQA 140
A+ HY++A
Sbjct: 358 ALMHYKEA 365
Score = 29.8 bits (68), Expect = 1.3
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 53/194 (27%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLH--MKSGTK--------HDAACN 76
+++EA CY +A A W+N G F + + K DA N
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208
Query: 77 LLDAANCFKKTDN-EAAIDCLSKAI--------------VIYTDMGRFTMA--------- 112
L N K+ + A+ +A+ +Y + G +A
Sbjct: 209 L---GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 113 -----AKHHQTIAEIYETDCVDQ---EKAVEHYEQAATYFKGEESNSSANK--CLLKVAH 162
+ +A + ++ +A + Y A ++S N + +
Sbjct: 266 LQPHFPDAYCNLANALK----EKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGN 320
Query: 163 HAALLQNYNKAIQI 176
++ Y KA+++
Sbjct: 321 IEEAVRLYRKALEV 334
Score = 29.4 bits (67), Expect = 1.6
Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 48/155 (30%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
++D + T A N++K + A + + A L D
Sbjct: 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF---IDG 103
Query: 74 ACNLLDAANCFKKT-DNEAAIDCLSKAI--------------VIYTDMGRFTMAAKHHQT 118
NL A D E A+ A+ + +GR A +
Sbjct: 104 YINL---AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 119 IAEIYETDCV-------------DQEKAVEHYEQA 140
E V + A+ H+E+A
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 30.3 bits (69), Expect = 0.69
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 39/153 (25%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
+ A E Y +A K++ A + +EA+ + +
Sbjct: 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP-ERSRV 143
Query: 74 ACNLLDAANCFKKT-DNEAAIDCLSKAI--------------VIYTDMGRFTMAAKHHQT 118
NL + A + K++ + + A +++
Sbjct: 144 FENL---GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 119 IAEIYETD------CVDQEKAVEHYEQAATYFK 145
A+ + + K E + AA+Y
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL 233
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 29.3 bits (66), Expect = 0.81
Identities = 9/90 (10%), Positives = 24/90 (26%), Gaps = 21/90 (23%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
K D+A + + + + A +++ A + +
Sbjct: 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRF 88
Query: 74 ACNLLDAANCFKKTDN-EAAIDCLSKAIVI 102
+ A C + + + A A +
Sbjct: 89 PFHA---AECHLQLGDLDGAESGFYSARAL 115
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 30.1 bits (68), Expect = 0.91
Identities = 21/176 (11%), Positives = 47/176 (26%), Gaps = 30/176 (17%)
Query: 28 NKIDEAIECYTRA-------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAA 74
K D+AI+ Y A + + + +A L K D +
Sbjct: 20 KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL------KPDYS 73
Query: 75 CNLLDAANCFKKTDN-EAAIDCLSKAIVI----------YTDMGRFTMAAKHHQTIAEIY 123
LL A+ + A+ LS + + A +
Sbjct: 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133
Query: 124 ETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
+T + + + + ++ + NY+++ + +E
Sbjct: 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Score = 30.1 bits (68), Expect = 1.0
Identities = 13/153 (8%), Positives = 38/153 (24%), Gaps = 39/153 (25%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
N A E +A +F + +
Sbjct: 251 NDPLGAHEDIKKAIELFPRVNSYIYMALIM--------------------------ADRN 284
Query: 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE 147
D+ + KA+ + ++ + + ++ + ++A + +++A E
Sbjct: 285 DSTEYYNYFDKALKLDSNN------SSVYYHRGQMNF-ILQNYDQAGKDFDKAKEL-DPE 336
Query: 148 ESNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
L ++ ++ E
Sbjct: 337 NIFPYIQLACLA-----YRENKFDDCETLFSEA 364
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein
biogenesis, GET PAT GET5 binding, protein transport;
1.98A {Chaetomium thermophilum}
Length = 336
Score = 30.0 bits (67), Expect = 1.1
Identities = 31/271 (11%), Positives = 76/271 (28%), Gaps = 26/271 (9%)
Query: 16 LLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAAC 75
R+V A++ + + + + G + A L + + +
Sbjct: 37 ETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG----DLAVLLVDTFRQAGQRV 92
Query: 76 NLLDAAN---CFKKTDNEAA--IDCLSKAIVIYTDMGRFTMAAKH-HQTIAEIYETDCVD 129
+ C + + + I G + H + +Y +
Sbjct: 93 DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE--- 149
Query: 130 QEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSL 189
+E A + S +L + Q+ + +Y R L L
Sbjct: 150 -----GEFEAAEKHLVLGTKESP---EVLARMEYEWYKQDESHTAPLY--CARAVLPYLL 199
Query: 190 LK--YSAKEYFFRAALCHLCIDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQN 247
+ +A + + + I F + +L+ +++ +
Sbjct: 200 VANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGS 259
Query: 248 VDGFTEAVKDY-DSISRLDQWYTTVLLRIKK 277
D F + Y +++ L+ + T L I +
Sbjct: 260 PDLFRQLKSKYEANLNELNGIWDTALELIAE 290
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Methanococcus maripaludis}
Length = 112
Score = 28.2 bits (64), Expect = 1.5
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 28 NKIDEAIECYTRAANM---FKMAKKWNNAGKAFVE 59
+ +EA++CY N+ W A
Sbjct: 54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein;
YP_296737.1, carboxymuconolactone decarboxylase family;
HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Length = 197
Score = 28.7 bits (64), Expect = 1.7
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDV 210
S+AN+CL V H A+L+ Y K + ++V L + + ++ A+ + V
Sbjct: 82 SAANQCLYCVVAHGAILRIYEKKPLVADQVAVNYLKADI---PPRQ----RAMLDFALKV 134
Query: 211 INAHNAID 218
A + ++
Sbjct: 135 CKASHEVN 142
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A
{Acidilobus saccharovorans}
Length = 223
Score = 28.7 bits (65), Expect = 2.0
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199
HH + N A+ E+ L ++ ++++ F
Sbjct: 47 HHLGYVNGANAALDKLEKYLNGQLTDIDVRAVSRDFEF 84
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation,
viral protein; 1.60A {Rift valley fever virus} PDB:
3ouo_A 3lyf_A
Length = 245
Score = 28.6 bits (63), Expect = 2.2
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 33 AIECYTRAANMFKMAKKWNNAGKAFVEA--ANLHMKSGTKHDAACNLLDAANCFKKTDNE 90
+ TR +M K + GKA VEA +K G L A +
Sbjct: 58 IVLALTRGNKPRRMMMKMSKEGKATVEALINKYKLKEGNPSRDELTLSRVAAALAGWTCQ 117
Query: 91 AAIDCLSKAIVIYTDM 106
A + V T M
Sbjct: 118 ALVVLSEWLPVTGTTM 133
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 28.8 bits (64), Expect = 2.2
Identities = 22/152 (14%), Positives = 39/152 (25%), Gaps = 5/152 (3%)
Query: 31 DEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHD--AACNLLDAANCFKKTD 88
+ ++C +NA NL D + N + D
Sbjct: 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230
Query: 89 NEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148
AA + L F + IA + E A E+ +
Sbjct: 231 KAAAANWLRHTAKPEFANNHFLQGQ--WRNIARAQ-ILLGEFEPAEIVLEELNENARSLR 287
Query: 149 SNSSANKCLLKVAHHAALLQNYNKAIQIYEEV 180
S N+ LL + + A ++ +
Sbjct: 288 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 28.3 bits (64), Expect = 2.5
Identities = 16/128 (12%), Positives = 29/128 (22%), Gaps = 51/128 (39%)
Query: 28 NKIDEAIECYTRA-ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86
++ A+E A + + +A+V K
Sbjct: 53 GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ---------------AEDRERGK 97
Query: 87 TDNEAAIDCLSKAI--------------VIYTDMGRFTMAAKHHQTIAEIYETDCVDQEK 132
E A+ L A ++Y +G +K
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER---------------------DK 136
Query: 133 AVEHYEQA 140
A +QA
Sbjct: 137 AEASLKQA 144
Score = 28.3 bits (64), Expect = 2.5
Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 37/121 (30%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86
+ D A+ + RA + + + ++ +
Sbjct: 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV----------------------- 55
Query: 87 TDNEAAIDCLSKAIVI-------YTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQ 139
A++ + Y + A AE E E+A+ +
Sbjct: 56 ---NPALENGKTLVARTPRYLGGYMVLS---EAYVALYRQAEDRERGKGYLEQALSVLKD 109
Query: 140 A 140
A
Sbjct: 110 A 110
Score = 27.1 bits (61), Expect = 6.1
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 36/130 (27%)
Query: 14 AALLRVVFITKVGGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVE 59
AL R + G +++A+ A ++ + + + A + +
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 60 AANLHMKSGTKHDAACNLLDAANCFKKTDN-EAAIDCLSKAI--------------VIYT 104
A L + L A + + A+ +KA+
Sbjct: 144 ALALE----DTPEIRSAL---AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196
Query: 105 DMGRFTMAAK 114
G+ AA+
Sbjct: 197 LKGKAEEAAR 206
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A
{Thermococcus SP}
Length = 526
Score = 28.7 bits (63), Expect = 3.0
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 14/111 (12%)
Query: 70 KHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVD 129
K D A LL A K +NE AI+ AI Y A
Sbjct: 425 KIDEAEQLLAKA---KGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNY---- 477
Query: 130 QEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHA-ALLQNYNKAIQIYEE 179
A + +E A Y+ ++A K L A + + + +E
Sbjct: 478 -LNAAKKHEMAGDYYV-----NAARKALNGDLEQAKIDAEKAKEYSNLAKE 522
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 28.5 bits (64), Expect = 3.1
Identities = 29/166 (17%), Positives = 47/166 (28%), Gaps = 22/166 (13%)
Query: 29 KIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLH--MKSGTK--------HDAACNL 77
+ I A A+ W G E N + + + A L
Sbjct: 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139
Query: 78 LDAANCFKKT-DNEAAIDCLSKAIVI---YTDMGRFTMAAKHHQTIAEIYETDCVDQEKA 133
A + T + A + L I Y + + + D E
Sbjct: 140 ---AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
Query: 134 VEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
E Y +AA + G+ + L V H L +N+AI +
Sbjct: 197 KELYLEAA-HQNGDMIDPDLQ-TGLGVLFH--LSGEFNRAIDAFNA 238
Score = 27.3 bits (61), Expect = 7.1
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 30/110 (27%)
Query: 22 ITKVGGNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKS 67
T G++ +EA+E YTRA + A F+ A +L KS
Sbjct: 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314
Query: 68 GTKHD---------------AACNLLDAANCFKKTDNEAAIDCLSKAIVI 102
+ A +L+D F+ + +D L +A +
Sbjct: 315 RNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG-DLDVLLRAFNL 363
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide
acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1
d.44.1.1 PDB: 3mds_A
Length = 203
Score = 27.9 bits (63), Expect = 3.1
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAAL 203
HH A + N N A++ Y + ++ L +A + A+
Sbjct: 32 HHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAV 73
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide
inactivation, oxidoreductase; 2.60A
{Methanothermobacterthermautotrophicus} SCOP: a.2.11.1
d.44.1.1
Length = 205
Score = 27.9 bits (63), Expect = 3.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFF 199
HH A + N ++ +E R S +K + KE F
Sbjct: 37 HHQAYVDGANALLRKLDEA-RESDTDVDIKAALKELSF 73
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 28.5 bits (64), Expect = 3.2
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 20/96 (20%)
Query: 27 GNKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHD 72
GN+ +EA+ Y RA A + F+EA N+ KS
Sbjct: 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323
Query: 73 AACNLLDAA-----NCFKKTD-NEAAIDCLSKAIVI 102
+ + ++A ++ +
Sbjct: 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359
Score = 28.5 bits (64), Expect = 3.4
Identities = 11/137 (8%), Positives = 29/137 (21%), Gaps = 29/137 (21%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKA----------FVEAANL 63
+ AI R A F A + +
Sbjct: 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171
Query: 64 HMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIY 123
+ + + + + A+ + + + ++
Sbjct: 172 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS----IDPDVQCGLGVLF 227
Query: 124 ETDCVDQEKAVEHYEQA 140
+ +KAV+ + A
Sbjct: 228 -NLSGEYDKAVDCFTAA 243
Score = 28.1 bits (63), Expect = 4.2
Identities = 14/127 (11%), Positives = 27/127 (21%), Gaps = 53/127 (41%)
Query: 28 NKIDEAIECYTRAANM---FKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCF 84
+ E E + A + G F + A +CF
Sbjct: 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD--------------KAVDCF 240
Query: 85 KKT----------------------DNEAAIDCLSKAI--------------VIYTDMGR 108
+E A+ +A+ + ++G
Sbjct: 241 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300
Query: 109 FTMAAKH 115
A +H
Sbjct: 301 HREAVEH 307
Score = 27.7 bits (62), Expect = 6.2
Identities = 15/134 (11%), Positives = 28/134 (20%), Gaps = 23/134 (17%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLH--MKSGTK--------HDAACN 76
+ A+ + A K + W G E + + + A
Sbjct: 78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 137
Query: 77 LLDAANCFKKT-DNEAAIDCLSKAIVI---YTDMGRFTMAAKHHQTIAEIYET-----DC 127
L A F A + L + Y + +
Sbjct: 138 L---AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194
Query: 128 VDQEKAVEHYEQAA 141
+ E + A
Sbjct: 195 SLFLEVKELFLAAV 208
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F
mutant, hydrogen bond, reactivity, ultra-high
resolution, oxidoreductase; 0.90A {Escherichia coli}
SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A
1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A
Length = 205
Score = 27.9 bits (63), Expect = 3.4
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAAL 203
HH + N N A++ E ++ + K + L
Sbjct: 30 HHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVL 71
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 28.1 bits (62), Expect = 3.9
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 6/96 (6%)
Query: 123 YETDCVDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGR 182
Y CV+QE+ + K + A + ++ Y A +E+
Sbjct: 145 YNAKCVEQERLKKEGATQREIEKAAVKSKKATD------TYKLYVEKYALAKADFEQKMT 198
Query: 183 TSLDSSLLKYSAKEYFFRAALCHLCIDVINAHNAID 218
+ + + L + H I
Sbjct: 199 ETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIG 234
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 28.2 bits (63), Expect = 4.1
Identities = 15/165 (9%), Positives = 41/165 (24%), Gaps = 29/165 (17%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
+ + +A + + +A L + + A
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL---TPQQVVA 346
Query: 74 ACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKA 133
+ + + L +A + + +A + + E ++
Sbjct: 347 IASHDGGKQ--ALETVQRLLPVLCQAHGLTPE---QVVAIASNGGGKQALE----TVQRL 397
Query: 134 VEHYEQAATYFKGEESNSSANK--CLLKVAHHAALLQNYNKAIQI 176
+ QA E+ + A+ + LL +A +
Sbjct: 398 LPVLCQAHG-LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 441
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 26.6 bits (59), Expect = 4.2
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 28/112 (25%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
I+ A++ + + +A+ N + K G
Sbjct: 14 GDIENALQALEEF-----LQTEPVGKDEAYYLMGNAYRKLG------------------- 49
Query: 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQ 139
D + A++ AI + D A + + + +I D +EH+
Sbjct: 50 DWQKALNNYQSAIELNPDSP----ALQARKMVMDILNFYNKDMYNQLEHHHH 97
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG,
midwest center for structural genomics, transporter;
HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB:
4ey3_A* 3t0n_A* 4eyk_A*
Length = 368
Score = 27.7 bits (62), Expect = 5.2
Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 19/130 (14%)
Query: 10 KQLAAALLRVVFITKVGGNKIDEA--IECYTRAANMFKMAKKW-----NNAGKAFVEA-- 60
KQ A L I +G + + + AA A + + K FV A
Sbjct: 212 KQFAERGLDKSGIKVIGPGDVMDDDLLNSMGDAALGVVTAHMYSAAHPSAMNKEFVAAYK 271
Query: 61 ------ANLHMKSGTKHDAACNLLDAANCFK-KTDNEAAIDCLSKAIVIYTDMGRFTMAA 113
G +D + +A K D ++ I + K + + G ++
Sbjct: 272 KEFGQRPGFMAVGG--YDGIHLVFEALKKTGGKADGDSLIAAM-KGMKWESPRGPISIDP 328
Query: 114 KHHQTIAEIY 123
+ + IY
Sbjct: 329 ETRDIVQNIY 338
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A
{Bacillus anthracis}
Length = 217
Score = 27.5 bits (62), Expect = 5.3
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAAL 203
HHA + N N A++ Y E+ SL+ L A+
Sbjct: 41 HHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAV 82
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 27.8 bits (63), Expect = 5.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 24 KVGGNKIDEAIECYTR 39
++ G+++DEAI Y R
Sbjct: 176 RIAGDEMDEAIVQYVR 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 27.7 bits (61), Expect = 5.3
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 19/129 (14%)
Query: 129 DQEKAVEHYEQAATYF---------KGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEE 179
+AV Y + ++ + + S S L +A L+ Y KA++ ++
Sbjct: 283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342
Query: 180 VGRTSLDSSLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSREYKLLRI 238
LDS+ K +R L + + +A ++ + P + +R + +
Sbjct: 343 A--LGLDSANEK--G---LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR--LQISM 393
Query: 239 LIEHIEEQN 247
+ +E N
Sbjct: 394 CQKKAKEHN 402
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 26.8 bits (59), Expect = 5.6
Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 13/126 (10%)
Query: 52 NAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTM 111
+ G + + A N ++ E A V+
Sbjct: 5 SGGGTIAMLNEI-----SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----- 54
Query: 112 AAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGE-ESNSSANKCLLKVAHHAALLQNY 170
++ + + + A+ Y A E A +CLL+ A
Sbjct: 55 -SRFFLGLGACRQAMG-QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112
Query: 171 NKAIQI 176
A ++
Sbjct: 113 FLAQEL 118
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus
acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A*
1wb7_A
Length = 210
Score = 27.1 bits (61), Expect = 5.7
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSL--LKYSAKEYFF 199
HH + N + E++ + L L+ + F
Sbjct: 37 HHKGYVNGANSLLDRLEKLIKGDLPQGQYDLQGILRGLTF 76
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics,
hypothetical cytosolic protein, PSI, protein structure
initiative; 1.83A {Bacillus subtilis subsp}
Length = 144
Score = 26.9 bits (59), Expect = 5.7
Identities = 11/81 (13%), Positives = 25/81 (30%)
Query: 28 NKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
+KI++ + + +F W + H+ D +++D
Sbjct: 7 SKIEKTLGFFEHQLALFDSQTDWQSEIGELALQRIGHLLIECILDTGNDMIDGFIMRDPG 66
Query: 88 DNEAAIDCLSKAIVIYTDMGR 108
+ +D L V+ G
Sbjct: 67 SYDDIMDILVDEKVVTEKEGD 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 27.0 bits (61), Expect = 7.0
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 56/142 (39%)
Query: 28 NKIDEAIECYTRA--------------ANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDA 73
+D E R+ + +K++ A ++ A + + +
Sbjct: 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN---FNV 112
Query: 74 ACNLLDAANCFKKTDN-EAAIDCLSKAI--------------VIYTDMGRFTMAAKHHQT 118
L + AID A+ Y MGR
Sbjct: 113 RFRL---GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH--------- 160
Query: 119 IAEIYETDCVDQEKAVEHYEQA 140
E+A+ H+++A
Sbjct: 161 ------------EEALPHFKKA 170
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 7.0
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 9/51 (17%)
Query: 208 IDVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQNVDGFTEAVKDY 258
++ + P+ +D E+ L R I + A + +
Sbjct: 1268 LEALKLE------AEEIPS-EDQNEFLLER--TREIHNEAESQLRAAQQQW 1309
>3ak2_A Superoxide dismutase [MN/FE]; cambialistic, oxidoreductase; 1.35A
{Aeropyrum pernix} PDB: 3ak1_A 3ak3_A 1p7g_A 3evk_A
Length = 214
Score = 27.2 bits (61), Expect = 7.4
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194
HH ++ N A++ E+ + + +
Sbjct: 35 HHNTYVKGANAALEKIEKHLKGEIQIDVRAVMR 67
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 26.3 bits (58), Expect = 7.5
Identities = 13/113 (11%), Positives = 26/113 (23%), Gaps = 34/113 (30%)
Query: 29 KIDEAIECYTRAANM-FKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKT 87
+ EA + + + W + G E
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD------------------------ 67
Query: 88 DNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQA 140
AI L+ A ++ H +A + T+ + A+
Sbjct: 68 --GLAIIALNHARMLDPKD------IAVHAALAVSH-TNEHNANAALASLRAW 111
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 26.8 bits (60), Expect = 7.8
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 20/91 (21%)
Query: 28 NKIDEAIECYTRAANM---------------FKMAKKWNNAGKAFVEAANLHMKSGTKHD 72
D+A E + +A ++ + + F +A T +
Sbjct: 56 KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP-TPYI 114
Query: 73 AACNLLDAANCFKKT-DNEAAIDCLSKAIVI 102
A N C K A L +++
Sbjct: 115 ANLNK---GICSAKQGQFGLAEAYLKRSLAA 142
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 26.7 bits (60), Expect = 8.5
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 15/87 (17%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLH--MKSGTK--------HDAACN 76
++A E +T+A + A + N L + K A
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 77 LLDAANCFKKT-DNEAAIDCLSKAIVI 102
N + + A D KA+
Sbjct: 97 A---GNVYVVKEMYKEAKDMFEKALRA 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 27.2 bits (60), Expect = 8.5
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 2 TDEKLVCEKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAA 61
+ E EK + +++ K +A+ Y + + + ++N +A
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 62 NLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAI 100
L A +L A K AAI+ +KA+
Sbjct: 195 RL----------ASHLNLAMCHLKLQAFSAAIESCNKAL 223
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena
SP} SCOP: a.2.11.1 d.44.1.1
Length = 248
Score = 26.9 bits (60), Expect = 8.8
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAAL 203
HHAA + N N A++ + E+ +S+++ L ++ R +
Sbjct: 66 HHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTV 107
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.2.11.1 d.44.1.1
PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A
Length = 201
Score = 26.7 bits (60), Expect = 9.1
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194
HH A + N A+ E + ++ K
Sbjct: 31 HHKAYVDGANTALDKLAEARDKADFGAINKLEK 63
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 26.9 bits (59), Expect = 9.3
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 109 FTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYF 144
+ A ++ AE A E AA
Sbjct: 59 WMSLANEYEQEAERKVALG-HDLSAGELLMSAALCA 93
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus
marinus}
Length = 226
Score = 26.9 bits (60), Expect = 9.5
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAA 202
HH + N + +L+ ++K + F +AA
Sbjct: 61 HHQTYVDTLNSIAAENSTIASKTLE-QIIKTETGKPFNQAA 100
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE PG4; 1.70A
{Silicibacter SP} SCOP: a.152.1.3
Length = 191
Score = 26.3 bits (58), Expect = 9.8
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 151 SSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAALCHLCIDV 210
SS NKC + H A ++ + Q+ E + + L A++ + +
Sbjct: 81 SSINKCFYCLVAHGAAVRQLSGDPQLGEMLVMNYRVAPL---DARQ----RVMLDFAAKM 133
Query: 211 INAHNAID 218
A I+
Sbjct: 134 TRASAEIE 141
>3rn4_A Superoxide dismutase [MN], mitochondrial; mitochondrial manganese
superoxide dismutase, iron-binding, mitochondrion,
oxidoreductase; 1.79A {Saccharomyces cerevisiae} PDB:
3bfr_A 3lsu_A*
Length = 215
Score = 26.4 bits (59), Expect = 10.0
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAAL 203
HH + +N A+ ++E+ + K + +
Sbjct: 38 HHQTYVNGFNTAVDQFQELSDLLAKEPSPANARKMIAIQQNI 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.132 0.384
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,887,074
Number of extensions: 293217
Number of successful extensions: 1715
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 281
Length of query: 320
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 226
Effective length of database: 4,077,219
Effective search space: 921451494
Effective search space used: 921451494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)