RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9376
(320 letters)
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 168 bits (425), Expect = 8e-51
Identities = 86/273 (31%), Positives = 149/273 (54%), Gaps = 2/273 (0%)
Query: 9 EKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSG 68
EK+ + + + K +EA + +AA ++++ K+ N AG +F++AA+ K+G
Sbjct: 12 EKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG 71
Query: 69 TKHDAACNLLDAANCFKKTDN-EAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDC 127
+ +A ++A CFK N A+D L AI I+T G+F A + EI E D
Sbjct: 72 NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL 131
Query: 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKAIQIYEEVGRTSLDS 187
D KA++ YE A ++ ++S + +NKC +K A AL Y +A IY ++ ++S+ +
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191
Query: 188 SLLKYSAKEYFFRAALCHLCI-DVINAHNAIDRYKTIYPAFQDSREYKLLRILIEHIEEQ 246
L ++S K+YF + LC L D + A + ++ P F DSRE L+ LI+ + E
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251
Query: 247 NVDGFTEAVKDYDSISRLDQWYTTVLLRIKKQV 279
+ + +E K++D+ RLD+W T+L +IK+ +
Sbjct: 252 DSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 31.0 bits (69), Expect = 0.12
Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 19/177 (10%)
Query: 32 EAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEA 91
EAI + K W A AF + H + N+ +
Sbjct: 4 EAISLWNEGVLAADK-KDWKGALDAFSAVQDPHSR------ICFNI--GCMYTILKNMTE 54
Query: 92 AIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEH--------YEQAATY 143
A +++I + E Y+ D ++A+ Y+
Sbjct: 55 AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 114
Query: 144 FKGEESNSSANK--CLLKVAHHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYF 198
FK N K + A + E + +D ++ ++ +
Sbjct: 115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 171
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB)
{Helicobacter pylori [TaxId: 210]}
Length = 133
Score = 30.1 bits (66), Expect = 0.15
Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 4/115 (3%)
Query: 30 IDEAIECYTRAA---NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKK 86
+ +AI+ Y +A MF +N+ + K+ +
Sbjct: 9 LKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENG 68
Query: 87 TDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAA 141
+ + ++ + + ++++AV+ +E+A
Sbjct: 69 KYVKKDLRKAAQYYSKACGLNDQ-DGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the
amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 373
Score = 30.4 bits (67), Expect = 0.31
Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 1/82 (1%)
Query: 42 NMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIV 101
+ F E A + + + L AA E L I
Sbjct: 255 DTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHL-YDID 313
Query: 102 IYTDMGRFTMAAKHHQTIAEIY 123
I G + +++ +
Sbjct: 314 IDAPQGPVRVERQNNHSRLSSR 335
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 30.3 bits (66), Expect = 0.31
Identities = 18/144 (12%), Positives = 33/144 (22%), Gaps = 1/144 (0%)
Query: 36 CYTRAANMFKMAKKWNNAGKAFVEAANLHMKSGTKHDAACNLLDAANCFKKTDNEAAIDC 95
C +NA NL D N + + + A
Sbjct: 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 233
Query: 96 LSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEESNSSANK 155
+ + IA + E A E+ + S N+
Sbjct: 234 NWLRHTAKPEFANNHFLQGQWRNIARAQILLG-EFEPAEIVLEELNENARSLRLMSDLNR 292
Query: 156 CLLKVAHHAALLQNYNKAIQIYEE 179
LL + + A ++ +
Sbjct: 293 NLLLLNQLYWQAGRKSDAQRVLLD 316
Score = 29.5 bits (64), Expect = 0.60
Identities = 18/166 (10%), Positives = 36/166 (21%), Gaps = 2/166 (1%)
Query: 8 CEKQLAAALLRVVFITKVGGNKIDEAIECYTRAANMFKMAKKWNNAGKAFVEAANLHMKS 67
+ L R+ + G D ++M A A +
Sbjct: 187 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246
Query: 68 GTKHDAACNLLDAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDC 127
+ A + E A L + + + ++ + ++Y
Sbjct: 247 NHFLQGQWRNI-ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305
Query: 128 VDQEKAVEHYEQAATYFKGEESNSSANKCLLKVAHHAALLQNYNKA 173
+ A A S +A L N
Sbjct: 306 -RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL 350
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 29.6 bits (65), Expect = 0.47
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 28 NKIDEAIECYTRAANMF-KMAKKWNNAGKAFVEAANLH--------MKSGTKHDAACNLL 78
ID AI+ Y RA + + N A E ++ A
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310
Query: 79 DAANCFKKTDNEAAIDCLSKAIVIYTDMGRFTMAAKHHQTIAEIYETDCVDQEKAVEHYE 138
A ++ + E A+ KA+ ++ + A H +A + + ++A+ HY+
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQ-QQGKLQEALMHYK 363
Query: 139 QA 140
+A
Sbjct: 364 EA 365
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
[TaxId: 2336]}
Length = 404
Score = 26.6 bits (58), Expect = 4.7
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 235 LLRILIEHIEEQNVDGFT----EAVKDYDSISRLDQWYTTVLLRIKKQVGRTSLDSSLLK 290
LL + E + + T E + D + ++ ++ K+V RT + L
Sbjct: 41 LLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEKLIELANKEVERTKKEHPLKH 100
Query: 291 YSAKEYF-----FRAALCHLCIDVINAYTQYKAN 319
AK Y +++ + +Y+
Sbjct: 101 KMAKFYREHFEKILNVFRSYDGNILEGFKKYQET 134
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 25.3 bits (55), Expect = 7.2
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 90 EAAIDCLSKAIVIYTDMGRF-TMAAKHHQTIAEIYETDCVDQ 130
EAA C + AI++ T GR + +++ A I T
Sbjct: 22 EAAFKCCAAAIIVLTTTGRSAQLLSRYRPRAAVIAVTRSAQA 63
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 25.3 bits (55), Expect = 7.3
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 90 EAAIDCLSKAIVIYTDMGRF-TMAAKHHQTIAEIYETDCVDQEKAVEHYEQAATYFKGEE 148
A + +KAI++ + G + +K+ I T C + Y + +E
Sbjct: 22 AAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHLYRGVFPFVFEKE 81
Query: 149 SNSSANKCLLKVAHHA 164
S + +
Sbjct: 82 PVSDWTDDVEARINFG 97
>d1jr9a1 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 90
Score = 24.6 bits (53), Expect = 7.5
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSAKEYFFRAAL 203
HH + N A++ +E++ SL+ + A R A+
Sbjct: 30 HHNTYVTKLNGALEGHEDLKNKSLNDLISNLDAVPENIRTAV 71
>d1r6fa_ e.46.1.1 (A:) Low calcium response locus protein V, LcrV
{Yersinia pestis [TaxId: 632]}
Length = 295
Score = 25.6 bits (56), Expect = 8.5
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 225 PAFQDSREYKLLR-ILIEHIEEQNVDGFTEAVKDY 258
F+ S EYK+L + I+ + ++KD+
Sbjct: 178 EIFKASAEYKILEKMPQTTIQVDGSEKKIVSIKDF 212
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex
pyrophilus [TaxId: 2714]}
Length = 89
Score = 24.2 bits (52), Expect = 9.8
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 162 HHAALLQNYNKAIQIYEEVGRTSLDSSLLKYSA 194
H+ + YN+ + + + YS
Sbjct: 30 HYKGYVAKYNEIQEKLADQNFADRSKANQNYSE 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.132 0.384
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,153,922
Number of extensions: 52672
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 53
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)