BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9378
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
Length = 471
Score = 296 bits (757), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/304 (50%), Positives = 197/304 (64%), Gaps = 33/304 (10%)
Query: 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKP--- 266
+DAFYV D+G+I++KH W LPRV P+YAVKCNDS+ +++ LAA GTGFDCASK
Sbjct: 47 KDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQ 106
Query: 267 --------------------ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIR 306
+S I+YAA G+ MTFD+E+EL KV + HP A+LV+RI
Sbjct: 107 LVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIA 166
Query: 307 CDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSA 366
D A C+L +KFG + + LL AK L++DVVGVSFHVGSGC DP F +AI A
Sbjct: 167 TDDSKAVCRLSVKFGA-TLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDA 225
Query: 367 RQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMN--RIAEIINVALDEYFPVEEGVSIIAEP 424
R +FD+G +GFSM +LD+GGG+PG + I +IN ALD+YFP + GV IIAEP
Sbjct: 226 RCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEP 285
Query: 425 GRYYVASAFTLATLIHSKRDILGANS-------SVPTHTMYYINDGVYGSFNCIIYDHAV 477
GRYYVASAFTLA I +K+ +L + S MYY+NDGVYGSFNCI+YDHA
Sbjct: 286 GRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAH 345
Query: 478 CTPI 481
P+
Sbjct: 346 VKPL 349
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%)
Query: 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64
E SS+WGPTCDGLD++ + LPEM VG W+++ +MGAYT+ ASTFNGF P ++
Sbjct: 358 EKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYY 417
Query: 65 VIEEHIWLMLK 75
V+ W +++
Sbjct: 418 VMSGPAWQLMQ 428
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
Length = 461
Score = 295 bits (756), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 155/304 (50%), Positives = 197/304 (64%), Gaps = 33/304 (10%)
Query: 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKP--- 266
+DAFYV D+G+I++KH W LPRV P+YAVKCNDS+ +++ LAA GTGFDCASK
Sbjct: 37 KDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQ 96
Query: 267 --------------------ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIR 306
+S I+YAA G+ MTFD+E+EL KV + HP A+LV+RI
Sbjct: 97 LVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIA 156
Query: 307 CDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSA 366
D A C+L +KFG + + LL AK L++DVVGVSFHVGSGC DP F +AI A
Sbjct: 157 TDDSKAVCRLSVKFGA-TLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDA 215
Query: 367 RQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMN--RIAEIINVALDEYFPVEEGVSIIAEP 424
R +FD+G +GFSM +LD+GGG+PG + I +IN ALD+YFP + GV IIAEP
Sbjct: 216 RCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEP 275
Query: 425 GRYYVASAFTLATLIHSKRDILGANS-------SVPTHTMYYINDGVYGSFNCIIYDHAV 477
GRYYVASAFTLA I +K+ +L + S MYY+NDGVYGSFNCI+YDHA
Sbjct: 276 GRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAH 335
Query: 478 CTPI 481
P+
Sbjct: 336 VKPL 339
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%)
Query: 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64
E SS+WGPTCDGLD++ + LPEM VG W+++ +MGAYT+ ASTFNGF P ++
Sbjct: 348 EKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYY 407
Query: 65 VIEEHIWLMLK 75
V+ W +++
Sbjct: 408 VMSGPAWQLMQ 418
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
Truncated 37 Residues From The C-Terminus, To 1.6
Angstrom Resolution
Length = 424
Score = 294 bits (753), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 152/299 (50%), Positives = 193/299 (64%), Gaps = 33/299 (11%)
Query: 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKP--- 266
+DAFYV D+G+I++KH W LPRV P+YAVKCNDS+ ++ LAA+GTGFDCASK
Sbjct: 37 KDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQ 96
Query: 267 --------------------ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIR 306
+S I+YAA G+ MTFD+EIEL KV + HP A+LV+RI
Sbjct: 97 LVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIA 156
Query: 307 CDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSA 366
D A C+L +KFG + + LL AK L++DV+GVSFHVGSGC DP F +A+ A
Sbjct: 157 TDDSKAVCRLSVKFGA-TLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDA 215
Query: 367 RQIFDLGNSLGFSMRVLDLGGGYPGY--TGYSMNRIAEIINVALDEYFPVEEGVSIIAEP 424
R +FD+ +GFSM +LD+GGG+PG T I +IN ALD+YFP + GV IIAEP
Sbjct: 216 RCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEP 275
Query: 425 GRYYVASAFTLATLIHSKRDILG-------ANSSVPTHTMYYINDGVYGSFNCIIYDHA 476
GRYYVASAFTLA I +K+ + + S MYY+NDGVYGSFNCI+YDHA
Sbjct: 276 GRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHA 334
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64
E SS+WGPTCDGLD++ + LPEM VG W+++ +MGAYT+ ASTFNGF P ++
Sbjct: 348 EKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYY 407
Query: 65 VIEEHIWLMLK 75
V+ +W ++K
Sbjct: 408 VMSRPMWQLMK 418
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/304 (50%), Positives = 196/304 (64%), Gaps = 33/304 (10%)
Query: 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASKP--- 266
+DAFYV D+G+I++KH W LPRV P+YAV CNDS+ +++ LAA GTGFDCASK
Sbjct: 31 KDAFYVADLGDILKKHLRWLKALPRVTPFYAVXCNDSKAIVKTLAATGTGFDCASKTEIQ 90
Query: 267 --------------------ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIR 306
+S I+YAA G+ MTFD+E+EL KV + HP A+LV+RI
Sbjct: 91 LVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIA 150
Query: 307 CDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSA 366
D A C+L +KFG + + LL AK L++DVVGVSFHVGSGC DP F +AI A
Sbjct: 151 TDDSKAVCRLSVKFGA-TLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDA 209
Query: 367 RQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMN--RIAEIINVALDEYFPVEEGVSIIAEP 424
R +FD+G +GFSM +LD+GGG+PG + I +IN ALD+YFP + GV IIAEP
Sbjct: 210 RCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEP 269
Query: 425 GRYYVASAFTLATLIHSKRDILGANS-------SVPTHTMYYINDGVYGSFNCIIYDHAV 477
GRYYVASAFTLA I +K+ +L + S MYY+NDGVYGSFNCI+YDHA
Sbjct: 270 GRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAH 329
Query: 478 CTPI 481
P+
Sbjct: 330 VKPL 333
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%)
Query: 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64
E SS+WGPTCDGLD++ + LPEM VG W+++ +MGAYT+ ASTFNGF P ++
Sbjct: 342 ERYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYY 401
Query: 65 VIEEHIWLMLK 75
V+ W +++
Sbjct: 402 VMSGPAWQLMQ 412
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/304 (50%), Positives = 196/304 (64%), Gaps = 33/304 (10%)
Query: 211 DAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------ 264
D F+V D+G+IVRKHE WK LPRV P+YAVKCND VL LAALGTGFDCAS
Sbjct: 38 DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 265 -----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRC 307
K ISHIRYA + G+D MTFD EL+KV + HP A++V+RI
Sbjct: 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST 157
Query: 308 DAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSAR 367
D +A+C+L +KFG + + +L AK L++DV GVSFHVGSG D F +AI +R
Sbjct: 158 DDSLARCRLSVKFGA-KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 368 QIFDLGNSLGFSMRVLDLGGGYPGYTG--YSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425
+FD+G LGF+M +LD+GGG+PG IA +IN AL+++FP + ++I+AEPG
Sbjct: 217 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 276
Query: 426 RYYVASAFTLATLIHSKRDILGANSSVPTHT-------MYYINDGVYGSFNCIIYDHAVC 478
RYYVASAFTLA + +K+ G + V H MYY+NDGVYGSFNCI+YDHAV
Sbjct: 277 RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVV 336
Query: 479 TPIP 482
P+P
Sbjct: 337 RPLP 340
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64
E L PSSVWGPTCDGLD++ + LPEM VG WL++ DMGAYT+ S+FNGF P ++
Sbjct: 348 EKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYY 407
Query: 65 VIE---EHIWLMLKDR 77
V+ +H+ LK +
Sbjct: 408 VVSGLPDHVVRELKSQ 423
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/304 (50%), Positives = 196/304 (64%), Gaps = 33/304 (10%)
Query: 211 DAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------ 264
D F+V D+G+IVRKHE WK LPRV P+YAVKCND VL LAALGTGFDCAS
Sbjct: 38 DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 265 -----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRC 307
K ISHIRYA + G+D MTFD EL+KV + HP A++V+RI
Sbjct: 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST 157
Query: 308 DAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSAR 367
D +A+C+L +KFG + + +L AK L++DV GVSFHVGSG D F +AI +R
Sbjct: 158 DDSLARCRLSVKFGA-KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 368 QIFDLGNSLGFSMRVLDLGGGYPGYTG--YSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425
+FD+G LGF+M +LD+GGG+PG IA +IN AL+++FP + ++I+AEPG
Sbjct: 217 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 276
Query: 426 RYYVASAFTLATLIHSKRDILGANSSVPTHT-------MYYINDGVYGSFNCIIYDHAVC 478
RYYVASAFTLA + +K+ G + V H MYY+NDGVYGSFNCI+YDHAV
Sbjct: 277 RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVV 336
Query: 479 TPIP 482
P+P
Sbjct: 337 RPLP 340
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64
E L PSSVWGPTCDGLD++ + LPEM VG WL++ DMGAYT+ S+FNGF P ++
Sbjct: 348 EKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYY 407
Query: 65 VIE---EHIWLMLKDR 77
V+ +H+ LK +
Sbjct: 408 VVSGLPDHVVRELKSQ 423
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 291 bits (746), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 153/304 (50%), Positives = 195/304 (64%), Gaps = 33/304 (10%)
Query: 211 DAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------ 264
D F+V D+G+IVRKHE WK LPRV P+YAVKCND VL LAALGTGFDCAS
Sbjct: 38 DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 265 -----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRC 307
K ISHIRYA + G+D MTFD EL+KV + HP A++V+RI
Sbjct: 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST 157
Query: 308 DAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSAR 367
D +A+C+L +KFG + + +L AK L++DV GVSFHVGSG D F +AI +R
Sbjct: 158 DDSLARCRLSVKFGA-KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 368 QIFDLGNSLGFSMRVLDLGGGYPGYTG--YSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425
+FD+G LGF+M +LD+GGG+PG IA +IN AL+++FP + ++I+AEPG
Sbjct: 217 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 276
Query: 426 RYYVASAFTLATLIHSKRDILGANSSVPTHT-------MYYINDGVYGSFNCIIYDHAVC 478
RYYVASAFTLA + +K G + V H MYY+NDGVYGSFNCI+YDHAV
Sbjct: 277 RYYVASAFTLAVNVIAKAVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVV 336
Query: 479 TPIP 482
P+P
Sbjct: 337 RPLP 340
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64
E L PSSVWGPTCDGLD++ + LPEM VG WL++ DMGAYT+ S+FNGF P ++
Sbjct: 348 EKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYY 407
Query: 65 VIE---EHIWLMLKDR 77
V+ +H+ LK +
Sbjct: 408 VVSGLPDHVVRELKSQ 423
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 291 bits (744), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/304 (50%), Positives = 195/304 (64%), Gaps = 33/304 (10%)
Query: 211 DAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------ 264
D F+V D+G+IVRKHE WK LPRV P+YAV CND VL LAALGTGFDCAS
Sbjct: 38 DPFFVADLGDIVRKHETWKKCLPRVTPFYAVACNDDWRVLGTLAALGTGFDCASNTEIQR 97
Query: 265 -----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRC 307
K ISHIRYA + G+D MTFD EL+KV + HP A++V+RI
Sbjct: 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST 157
Query: 308 DAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSAR 367
D +A+C+L +KFG + + +L AK L++DV GVSFHVGSG D F +AI +R
Sbjct: 158 DDSLARCRLSVKFGA-KVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 216
Query: 368 QIFDLGNSLGFSMRVLDLGGGYPGYTG--YSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425
+FD+G LGF+M +LD+GGG+PG IA +IN AL+++FP + ++I+AEPG
Sbjct: 217 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 276
Query: 426 RYYVASAFTLATLIHSKRDILGANSSVPTHT-------MYYINDGVYGSFNCIIYDHAVC 478
RYYVASAFTLA + +K+ G + V H MYY+NDGVYGSFNCI+YDHAV
Sbjct: 277 RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVV 336
Query: 479 TPIP 482
P+P
Sbjct: 337 RPLP 340
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 5 ETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64
E L PSSVWGPTCDGLD++ + LPEM VG WL++ DMGAYT+ S+FNGF P ++
Sbjct: 348 EKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYY 407
Query: 65 VIE---EHIWLMLKDR 77
V+ +H+ LK +
Sbjct: 408 VVSGLPDHVVRELKSQ 423
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 171/290 (58%), Gaps = 33/290 (11%)
Query: 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----- 264
++AF+V D+G+IV+KH W+ + ++ P+Y VKCN + VLE+LAALGTGF C+S
Sbjct: 37 KNAFFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMA 96
Query: 265 ------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIR 306
K +S I+YAA+ G++ MT DNEIEL+K+ + HP A++++ I
Sbjct: 97 LVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIA 156
Query: 307 CDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSA 366
+ + MKFG + LL AK LD+ ++GV FHV S C + V+ A+ A
Sbjct: 157 TEDNIGGEDGNMKFGT-TLKNCRHLLECAKELDVQIIGVKFHVSSACKEYQVYVHALSDA 215
Query: 367 RQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGR 426
R +FD+ GF+M +LD+GGG+ G T + + +I+ LD YFP G+ II+EPG
Sbjct: 216 RCVFDMAGEFGFTMNMLDIGGGFTG-TEIQLEEVNHVISPLLDIYFPEGSGIQIISEPGS 274
Query: 427 YYVASAFTLATLIHSKRDI--------LGANSSVPTHTMYYINDGVYGSF 468
YYV+SAFTLA I +K+ + + N S +YY+NDGVYGSF
Sbjct: 275 YYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSF 324
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 1 YPYRETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIP 60
Y E L SS+WGP+CD LD++ + LLPE+ VG WLI+ +MGA + S FN F P
Sbjct: 342 YKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRP 401
Query: 61 KVHAVIEEHIWLMLKDRLPLTQDHFIK 87
++ ++ W ++D +T D +K
Sbjct: 402 AIYFMMSFSDWYEMQDA-GITSDAMMK 427
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
Length = 372
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 153/280 (54%), Gaps = 34/280 (12%)
Query: 226 EDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS--------------------- 264
+ W + PRV P+YAVKCN+ +++L+ + FDCAS
Sbjct: 32 DQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAH 91
Query: 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGC 322
K I + +A + G+D TFD+ EL K+ +HP ++++RIRCD A QLG KFG
Sbjct: 92 TMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRCDDPNATVQLGNKFGA 151
Query: 323 DPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRV 382
+ E LL AK LD++V+G+SFHVGSG +P + RAI S+++ F+ S+G +
Sbjct: 152 NE-DEIRHLLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYI 210
Query: 383 LDLGGGYPG--YTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIH 440
LD+GGG G +++ IN A+ ++FP E+ V+I+AEPGR++ LAT +
Sbjct: 211 LDIGGGLHADIDEGELSTYMSDYINDAIKDFFP-EDTVTIVAEPGRFFAEHYSVLATQVI 269
Query: 441 SKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTP 480
KR G Y+ N+ YG F+ +I++ +V TP
Sbjct: 270 GKRVRDGLYE-------YFFNESTYGGFSNVIFEKSVPTP 302
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 2 PYRETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGF 57
P E VPS ++G TCDG+D +N ++ LPE+ +G W+ + GAYT + ++FNGF
Sbjct: 309 PDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGF 364
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
Length = 372
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 153/280 (54%), Gaps = 34/280 (12%)
Query: 226 EDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS--------------------- 264
+ W + PRV P+YAVKCN+ +++L+ + FDCAS
Sbjct: 32 DQWTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAH 91
Query: 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGC 322
K I + +A + G+D TFD+ EL K+ +HP ++++RIRCD A QLG KFG
Sbjct: 92 TMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRCDDPNAAVQLGNKFGA 151
Query: 323 DPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRV 382
+ E LL AK LD++V+G+SFHVGSG +P + RAI S+++ F+ S+G +
Sbjct: 152 NE-DEIRHLLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYI 210
Query: 383 LDLGGGYPG--YTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIH 440
LD+GGG G +++ IN A+ ++FP E+ V+I+AEPGR++ LAT +
Sbjct: 211 LDIGGGLHADIDEGELSTYMSDYINDAIKDFFP-EDTVTIVAEPGRFFAEHYSVLATQVI 269
Query: 441 SKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTP 480
KR G Y+ N+ YG F+ +I++ +V TP
Sbjct: 270 GKRVRDGLYE-------YFFNESTYGGFSNVIFEKSVPTP 302
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 2 PYRETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGF 57
P E VPS ++G TCDG+D +N ++ LPE+ +G W+ + GAYT + ++FNGF
Sbjct: 309 PDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGF 364
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 141/306 (46%), Gaps = 34/306 (11%)
Query: 212 AFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------- 264
F++ D + + E WK +P V P +AVKCN ++++L LG GFDCAS
Sbjct: 27 GFWIFDTEGVEKAVERWKKNMPTVRPCFAVKCNPEPHLVKLLGELGCGFDCASLNEIKEV 86
Query: 265 ----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCD 308
KP + + A+ GI+ D+ E+QK+ ++ P ++IRI +
Sbjct: 87 LDLGFNPEDITYSQTFKPYNQLIEASHLGINHTIVDSIDEVQKIAKYAPKMGIMIRIMEN 146
Query: 309 AEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQ 368
A G KFG E +L+ K L++ GV FHVGS + VF +A+ AR
Sbjct: 147 DTSAGHVFGEKFGLHD-DEVEIVLKEIKDKGLNLDGVHFHVGSDSHNSEVFTKALTKARN 205
Query: 369 IFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEY-FPVEEGVSIIAEPGRY 427
L G ++D+GGG+ + A I + E FP E IAEPGRY
Sbjct: 206 TVTLAEQFGMKPYLIDIGGGFSQVAPFE--EFAATIEKTIKELEFP--ERTRFIAEPGRY 261
Query: 428 YVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIY--DHAVCTPIPFNV 485
++AF L + +H KR + + Y DG++GSF C I+ C I V
Sbjct: 262 MASNAFHLVSSLHGKRVRI---QNGKKQIEYTSGDGLHGSFGCCIWFEKQKSCECITQKV 318
Query: 486 MDDSQV 491
+++++
Sbjct: 319 NENTKM 324
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 10 SSVWGPTCDGLDKVNDDILLPEMPVGS-WLIYRDMGAYTLPVASTFNGF 57
S ++GP+C+G DKV LPEM G WL++ +MGAYT+ +A+ FNGF
Sbjct: 327 SIIYGPSCNGSDKVATQ-ELPEMEPGKDWLLFPNMGAYTISMATNFNGF 374
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLJ|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLK|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
pdb|2PLK|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
Length = 419
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 137/291 (47%), Gaps = 38/291 (13%)
Query: 213 FYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCASK------- 265
+LD I +++ K LP V +YA+K +V+ L A G FD A+
Sbjct: 57 LLLLDCDVIRQQYRALKNALPNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVA 116
Query: 266 -------------PISH---IRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDA 309
PI IR A YG + DN EL+K K + +L++R+
Sbjct: 117 SEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSFRN 176
Query: 310 EVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQI 369
A L KFGC P +A ++ AK ++ + G+SFHVGS +P + AI++ R +
Sbjct: 177 SEAFADLSKKFGCSP-EQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHV 235
Query: 370 FDLGNSLGF-SMRVLDLGGGYP-GYTGYSM--NRIAEIINVALDEYFPVEEGVSIIAEPG 425
+ G ++ LD+GGG+P YT M ++ IN AL P E V ++AEPG
Sbjct: 236 MEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALS-LLP--ETVHVLAEPG 292
Query: 426 RYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHA 476
R+ A A T + + + G YY++DG+YGSF+ +++D A
Sbjct: 293 RFICAPAVTSVASVMGQAEREG-------QIWYYLDDGIYGSFSGLMFDDA 336
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVI 66
L+PS + GPTCD +D + ++ILLP++ G +I R MGAYT A+ FN F + A+
Sbjct: 349 LIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALN 408
Query: 67 E 67
E
Sbjct: 409 E 409
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 96/237 (40%), Gaps = 37/237 (15%)
Query: 239 YAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KPISHIRYAAE 275
YAVK N + VL LA LG+GFD S K + ++ A +
Sbjct: 82 YAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQ 141
Query: 276 YGIDTMTFDNEIELQKVK----QFHPTAQLVIRIRCDAEVAQ---CQLGM---KFGCDPI 325
I ++E ELQ++ + A + +RI D + G+ KFG
Sbjct: 142 LKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGI-TF 200
Query: 326 SEAPRLLRLAKSL-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLD 384
A ++ RLA SL +LDV G+ H+GS F A + D + G +R LD
Sbjct: 201 DRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLD 260
Query: 385 LGGGYP-GYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIH 440
+GGG Y + +E LD + +I EPGR A+A L T +
Sbjct: 261 VGGGLGVVYRDELPPQPSEYAKALLDR-LERHRDLELIFEPGRAIAANAGVLVTKVE 316
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus
pdb|2P3E|B Chain B, Crystal Structure Of Aq1208 From Aquifex Aeolicus
Length = 420
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 41/227 (18%)
Query: 202 YPDNVGMKEDA------FYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAA 255
+ + V +KE A YV I + E ++ P YAVK N + ++++L
Sbjct: 19 FIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFPDALICYAVKANFNPHLVKLLGE 78
Query: 256 LGTGFDCASK-----------PISHIRYAAEYGID---TMTFDNEIELQKVK-------- 293
LG G D S P I YA + T D+EI + V+
Sbjct: 79 LGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVL 138
Query: 294 -----QFHPTAQLVIRIRCDAE------VAQCQLGMKFGCDPISEAPRLLRLAKSLD-LD 341
+ A++ IR+ D + +A KFG D I EA + A L+ L+
Sbjct: 139 NEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVD-IREAQKEYEYASKLENLE 197
Query: 342 VVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG 388
+VG+ H+GS D + A+ +++ GF ++ LD+GGG
Sbjct: 198 IVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGG 244
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 113/290 (38%), Gaps = 49/290 (16%)
Query: 189 PRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWK--LKLPRVDPYYAVKCNDS 246
PR M +NY + + FY+ D +I + ++K K + YA+K N +
Sbjct: 16 PRGSHM-----FNYEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSN 70
Query: 247 QMVLEVLAALGTGFDCAS-----------------------KPISHIRYAAEYGIDTMTF 283
+L +LA L +G DC S K I A + I +
Sbjct: 71 LSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNV 130
Query: 284 DNEIELQKVKQFHPT----AQLVIRIR--CDAE----VAQCQLGMKFGCDPISEAPRLLR 333
++ +EL+ ++ + A++ IRI DA+ ++ KFG L
Sbjct: 131 ESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLW 190
Query: 334 LAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG----Y 389
KS L+ V V FH+GS D A +I +LG +R D+GGG Y
Sbjct: 191 AKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSY 250
Query: 390 PGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLI 439
+ A+ I AL ++II EPGR VA + L T +
Sbjct: 251 ENEETIKLYDYAQGILNALQGL-----DLTIICEPGRSIVAESGELITQV 295
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEE 68
P V GP C+ D D LPE+ G + +GAY +AS +N P + +E+
Sbjct: 341 PCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRP-KLLELALED 399
Query: 69 HIWLMLKDRLPL 80
H +++ R L
Sbjct: 400 HKIRVIRKREAL 411
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 112/290 (38%), Gaps = 49/290 (16%)
Query: 189 PRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWK--LKLPRVDPYYAVKCNDS 246
PR M +NY + + FY+ D +I + ++K K + YA+K N +
Sbjct: 16 PRGSHM-----FNYEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSN 70
Query: 247 QMVLEVLAALGTGFDCAS-----------------------KPISHIRYAAEYGIDTMTF 283
+L +LA L +G DC S K I A + I +
Sbjct: 71 LSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNV 130
Query: 284 DNEIELQKVKQFHPT----AQLVIRIRCDAEVAQ---CQLGMK---FGCDPISEAPRLLR 333
++ +EL+ ++ + A++ IRI + + G+K FG L
Sbjct: 131 ESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYLSTGLKENKFGVGEKEALEMFLW 190
Query: 334 LAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG----Y 389
KS L+ V V FH+GS D A +I +LG +R D+GGG Y
Sbjct: 191 AKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSY 250
Query: 390 PGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLI 439
+ A+ I AL ++II EPGR VA + L T +
Sbjct: 251 ENEETIKLYDYAQGILNALQGL-----DLTIICEPGRSIVAESGELITQV 295
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 PSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEE 68
P V GP C+ D D LPE+ G + +GAY +AS +N P + +E+
Sbjct: 341 PCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRP-KLLELALED 399
Query: 69 HIWLMLKDRLPL 80
H +++ R L
Sbjct: 400 HKIRVIRKREAL 411
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|C Chain C, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|D Chain D, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
Length = 434
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 46/249 (18%)
Query: 239 YAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KPISHIRYAAE 275
YA K N + + +LA LG G D S K I E
Sbjct: 66 YAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIE 125
Query: 276 YGIDTMTFDNEIEL----QKVKQFHPTAQLVIRI------RCDAEVAQCQLGMKFGCDPI 325
I D+ EL + K+ TA + RI + +++ KFG D
Sbjct: 126 ANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVE 185
Query: 326 SE-APRLLRLAKSLD-LDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSL---GFSM 380
S A + +++A ++ ++VVGV H+GS D F I R++ D L G +
Sbjct: 186 SGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPF---IEETRKVMDFVVELKEEGIEI 242
Query: 381 RVLDLGGGY--PGYTGYSMNRIAEIINVALDEYFPVEEGV---SIIAEPGRYYVASAFTL 435
++LGGG P Y + ++ + ++ ++ V ++I EPGR VA+A L
Sbjct: 243 EDVNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYL 302
Query: 436 ATLIHSKRD 444
+H ++
Sbjct: 303 LGKVHHIKE 311
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 11 SVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHI 70
S+ G C+ D D L ++ VG L D+GAY + +A+ +N P++ ++ +
Sbjct: 352 SIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGV 411
Query: 71 WLM 73
+L+
Sbjct: 412 FLI 414
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
pdb|3VAB|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
Length = 443
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 111/282 (39%), Gaps = 50/282 (17%)
Query: 202 YPDNVGMKEDA------FYVLDVGEIVRKHEDWKLKLPRVDPY--YAVKCNDSQMVLEVL 253
+ +NV + E A FYV I R + +D YA+ N +Q VL L
Sbjct: 34 HAENVSLPEIAKAVGTPFYVYSRATIERHFRVFHDAFADMDTLVTYALXANSNQAVLTAL 93
Query: 254 AALGTGFDCASK-----------PISHI------------RYAAEYGIDTMTFDNEIELQ 290
A LG G D S+ P + I +A E GI ++E EL+
Sbjct: 94 AKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVESEPELE 153
Query: 291 ----KVKQFHPTAQLVIRIRCD------AEVAQCQLGMKFGCDPISEAPRLLRLAKSL-D 339
+ A + +RI D A+++ + KFG P +A A SL
Sbjct: 154 ILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGI-PRDKARAAYARAASLPG 212
Query: 340 LDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG----YPGYTGY 395
L+VVG+ H+GS D F A ++ + G ++R +D+GGG Y
Sbjct: 213 LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYRTPNTP 272
Query: 396 SMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLAT 437
+A VA P+ G+ + EPGR V +A L T
Sbjct: 273 PPPPVAYAQIVA-KHIKPL--GLKTVFEPGRLIVGNAGLLVT 311
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
pdb|1KO0|A Chain A, Crystal Structure Of A D,L-Lysine Complex Of
Diaminopimelate Decarboxylase
Length = 425
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 8 VPSSVWGPTCDGLDKVN-------DDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFP-I 59
V + V GP C+ D + LPE+ G +L+ D GAY ++S +N P +
Sbjct: 333 VETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLL 392
Query: 60 PKV 62
P+V
Sbjct: 393 PEV 395
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 32/252 (12%)
Query: 245 DSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQ------------KV 292
DS + E+ AL G++ + P I + A+ ID T + ELQ ++
Sbjct: 73 DSVSLGEIERALAAGYNPQTHP-DDIVFTADV-IDQATLERVSELQIPVNAGSVDMLDQL 130
Query: 293 KQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDP-----ISEAPRLLRLAKSLDLDVVGVSF 347
Q P ++ +R+ Q G + ++ P L + + L +VG+
Sbjct: 131 GQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHM 190
Query: 348 HVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP-----GYTGYSMNRIAE 402
H+GSG + RQ+ + G L + + GGG G
Sbjct: 191 HIGSGVDYAHLEQVCGAMVRQVIEFGQDL----QAISAGGGLSVPYQQGEEAVDTEHYYG 246
Query: 403 IINVALDEYFP-VEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMY--Y 459
+ N A ++ + V + EPGR+ VA + L T + S + +G+ V +
Sbjct: 247 LWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQ-MGSRHFVLVDAGFNDL 305
Query: 460 INDGVYGSFNCI 471
+ +YGS++ I
Sbjct: 306 MRPAMYGSYHHI 317
>pdb|3LHT|A Chain A, Crystal Structure Of The Mutant V201f Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LHT|B Chain B, Crystal Structure Of The Mutant V201f Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
Length = 228
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP +FGR+IY A
Sbjct: 187 GDPGETLRFADAIIFGRSIYLA 208
>pdb|1TUF|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
pdb|1TUF|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
Length = 434
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 11 SVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHI 70
S+ G C+ D D L ++ VG L D+GAY + +A+ +N P++ ++ +
Sbjct: 352 SIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTSKKGV 411
Query: 71 WLM 73
+L+
Sbjct: 412 FLI 414
>pdb|3RLV|A Chain A, Crystal Structure Of The Mutant Y206f Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3RLV|B Chain B, Crystal Structure Of The Mutant Y206f Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
Length = 228
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---VFGRAIYSARQIF 370
GDP F AI R IF
Sbjct: 187 GDPGETLRFADAIIVGRSIF 206
>pdb|3NQ6|A Chain A, Crystal Structure Of The Mutant P180a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor 6-Azaump
pdb|3NQ6|B Chain B, Crystal Structure Of The Mutant P180a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor 6-Azaump
Length = 228
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISAGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3P5Z|A Chain A, Crystal Structure Of The Mutant T159s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3P5Z|B Chain B, Crystal Structure Of The Mutant T159s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P S RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSSRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LHZ|A Chain A, Crystal Structure Of The Mutant V201a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LHZ|B Chain B, Crystal Structure Of The Mutant V201a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3M44|A Chain A, Crystal Structure Of The Mutant V201a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum
pdb|3M44|B Chain B, Crystal Structure Of The Mutant V201a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum
Length = 228
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---VFGRAIYSARQIF 370
GDP F AI + R I+
Sbjct: 187 GDPGETLRFADAIIAGRSIY 206
>pdb|3V1P|A Chain A, Crystal Structure Of The Mutant Q185a Of Orotidine
5'-monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3V1P|B Chain B, Crystal Structure Of The Mutant Q185a Of Orotidine
5'-monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
Length = 228
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAAG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3SJ3|A Chain A, Crystal Structure Of The Mutant R160a.Y206f Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3SJ3|B Chain B, Crystal Structure Of The Mutant R160a.Y206f Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
Length = 228
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTAPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---VFGRAIYSARQIF 370
GDP F AI R IF
Sbjct: 187 GDPGETLRFADAIIVGRSIF 206
>pdb|1KM2|A Chain A, Crystal Structure Of Orotidine Monophosphate Mutant Q185a
With 6- Azaump
Length = 247
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAAG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1LOQ|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With Product Ump
Length = 228
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LV5|A Chain A, Crystal Structure Of The Mutant I199e Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LV5|B Chain B, Crystal Structure Of The Mutant I199e Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
Length = 228
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDP---------PVFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAEIVGRSIYLA 208
>pdb|3LHY|A Chain A, Crystal Structure Of The Mutant I199a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LHY|B Chain B, Crystal Structure Of The Mutant I199a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3M43|A Chain A, Crystal Structure Of The Mutant I199a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum
pdb|3M43|B Chain B, Crystal Structure Of The Mutant I199a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum
Length = 228
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDP---------PVFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAAIVGRSIYLA 208
>pdb|3SGU|A Chain A, Crystal Structure Of Methanothermobacter
Thermautotrophicus Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 5-Fluoro-6-
Iodo-Ump
Length = 247
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|2ZZ4|A Chain A, Covalent Complex Of Orotidine Monophosphate Decarboxylase
D75n Mutant From M. Thermoautotrophicum With 6-Cyano-Ump
pdb|2ZZ4|B Chain B, Covalent Complex Of Orotidine Monophosphate Decarboxylase
D75n Mutant From M. Thermoautotrophicum With 6-Cyano-Ump
Length = 252
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 131 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 189
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 190 GDPGETLRFADAIIVGRSIYLA 211
>pdb|3LLF|A Chain A, Crystal Structure Of The Mutant S127p Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With 6-Azauridine
5'-Monophosphate
pdb|3LLF|B Chain B, Crystal Structure Of The Mutant S127p Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1X1Z|A Chain A, Orotidine 5'-Monophosphate Decarboxylase (Odcase)
Complexed With Bmp (Produced From 6-Cyanoump)
pdb|1X1Z|B Chain B, Orotidine 5'-Monophosphate Decarboxylase (Odcase)
Complexed With Bmp (Produced From 6-Cyanoump)
pdb|2E6Y|A Chain A, Covalent Complex Of Orotidine 5'-Monophosphate
Decarboxylase (Odcase) With 6-Iodo-Ump
pdb|2E6Y|B Chain B, Covalent Complex Of Orotidine 5'-Monophosphate
Decarboxylase (Odcase) With 6-Iodo-Ump
pdb|2ZZ1|A Chain A, Snapshot Of The Reaction From 6-cn-ump To Bmp Catalyzed By
Orotidine Monophosphate Deacarboxylase From M.
Thermoautotrophicum
pdb|2ZZ1|B Chain B, Snapshot Of The Reaction From 6-cn-ump To Bmp Catalyzed By
Orotidine Monophosphate Deacarboxylase From M.
Thermoautotrophicum
pdb|2ZZ6|A Chain A, Covalent Complex Of Orotidine Monophosphate Decarboxylase
From M. Thermoautotrophicum With 6-Azido-Ump
pdb|2ZZ6|B Chain B, Covalent Complex Of Orotidine Monophosphate Decarboxylase
From M. Thermoautotrophicum With 6-Azido-Ump
pdb|3W07|A Chain A, Atomic Resolution Structure Of Orotidine 5'-monophosphate
Decarboxylase From Methanothermobacter
Thermoautotrophicus Bound With Ump
Length = 252
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 131 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 189
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 190 GDPGETLRFADAIIVGRSIYLA 211
>pdb|3NQE|A Chain A, Crystal Structure Of The Mutant L123n Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQE|B Chain B, Crystal Structure Of The Mutant L123n Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3PBW|A Chain A, Crystal Structure Of The Mutant L123n Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
pdb|3PBW|B Chain B, Crystal Structure Of The Mutant L123n Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LI1|A Chain A, Crystal Structure Of The Mutant I218a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LI1|B Chain B, Crystal Structure Of The Mutant I218a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3M47|A Chain A, Crystal Structure Of The Mutant I218a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum
pdb|3M47|B Chain B, Crystal Structure Of The Mutant I218a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum
Length = 228
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LV6|A Chain A, Crystal Structure Of The Mutant I218f Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LV6|B Chain B, Crystal Structure Of The Mutant I218f Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
Length = 228
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LHU|A Chain A, Crystal Structure Of The Mutant I199f Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LHU|B Chain B, Crystal Structure Of The Mutant I199f Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
Length = 228
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAFIVGRSIYLA 208
>pdb|3NQD|A Chain A, Crystal Structure Of The Mutant I96t Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQD|B Chain B, Crystal Structure Of The Mutant I96t Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3PBV|A Chain A, Crystal Structure Of The Mutant I96t Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
pdb|3PBV|B Chain B, Crystal Structure Of The Mutant I96t Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3NQM|A Chain A, Crystal Structure Of The Mutant V155s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQM|B Chain B, Crystal Structure Of The Mutant V155s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3PC0|A Chain A, Crystal Structure Of The Mutant V155s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
pdb|3PC0|B Chain B, Crystal Structure Of The Mutant V155s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYSGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3G1Y|A Chain A, Crystal Structure Of The Mutant D70n Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Sulfate
pdb|3G1Y|B Chain B, Crystal Structure Of The Mutant D70n Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Sulfate
pdb|3G22|A Chain A, Crystal Structure Of The Mutant D70n Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Uridine
5'-Monophosphate
pdb|3G22|B Chain B, Crystal Structure Of The Mutant D70n Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Uridine
5'-Monophosphate
pdb|3G24|A Chain A, Crystal Structure Of The Mutant D70n Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine 5'-
Monophosphate
pdb|3G24|B Chain B, Crystal Structure Of The Mutant D70n Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine 5'-
Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LLD|A Chain A, Crystal Structure Of The Mutant S127g Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With 6-Azauridine
5'-Monophosphate
pdb|3LLD|B Chain B, Crystal Structure Of The Mutant S127g Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|2ZZ2|A Chain A, Orotidine Monophosphate Decarboxylase K72a Mutant From M.
Thermoautotrophicum Complexed With 6-Cyano-Ump
pdb|2ZZ2|B Chain B, Orotidine Monophosphate Decarboxylase K72a Mutant From M.
Thermoautotrophicum Complexed With 6-Cyano-Ump
pdb|2ZZ7|A Chain A, Orotidine Monophosphate Decarboxylase K72a Mutant
Complexed With Bmp (Produced From 6-Iodo-Ump)
Length = 252
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 131 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 189
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 190 GDPGETLRFADAIIVGRSIYLA 211
>pdb|3G18|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
pdb|3G18|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
pdb|3G1A|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 6-Azauridine 5'-Monophosphate
pdb|3G1A|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 6-Azauridine 5'-Monophosphate
pdb|3G1D|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With Uridine 5'-Monophosphate
pdb|3G1D|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With Uridine 5'-Monophosphate
pdb|3G1F|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|C Chain C, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|D Chain D, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|E Chain E, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|F Chain F, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|G Chain G, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|H Chain H, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|I Chain I, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|J Chain J, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|K Chain K, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|L Chain L, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1F|M Chain M, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydroorotidine 5'-Monophosphate
pdb|3G1H|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|C Chain C, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|D Chain D, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|E Chain E, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|F Chain F, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|G Chain G, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|H Chain H, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|I Chain I, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|J Chain J, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|K Chain K, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|L Chain L, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3G1H|M Chain M, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Methanobacterium Thermoautotrophicum
Complexed With 5,6-Dihydrouridine 5'-Monophosphate
pdb|3LTP|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylas Methanobacterium Thermoautotrophicum
Complexed With Inhibit
pdb|3LTP|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylas Methanobacterium Thermoautotrophicum
Complexed With Inhibit
Length = 228
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3NQF|A Chain A, Crystal Structure Of The Mutant L123s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQF|B Chain B, Crystal Structure Of The Mutant L123s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3PBY|A Chain A, Crystal Structure Of The Mutant L123s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
pdb|3PBY|B Chain B, Crystal Structure Of The Mutant L123s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3NQC|A Chain A, Crystal Structure Of The Mutant I96s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQC|B Chain B, Crystal Structure Of The Mutant I96s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3PBU|A Chain A, Crystal Structure Of The Mutant I96s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
pdb|3PBU|B Chain B, Crystal Structure Of The Mutant I96s Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 6-Azauridine
5'-Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|2ZZ3|A Chain A, Covalent Complex Of Orotidine Monophosphate Decarboxylase
D70a Mutant From M. Thermoautotrophicus With 6-Cyano-Ump
pdb|2ZZ3|B Chain B, Covalent Complex Of Orotidine Monophosphate Decarboxylase
D70a Mutant From M. Thermoautotrophicus With 6-Cyano-Ump
Length = 252
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 131 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 189
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 190 GDPGETLRFADAIIVGRSIYLA 211
>pdb|1DV7|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Length = 227
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 127 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 185
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 186 GDPGETLRFADAIIVGRSIYLA 207
>pdb|1KM5|A Chain A, Crystal Structure Of Odcase Mutant D75n Complexed With
6-Azaump
Length = 247
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1KM0|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70n Complexed With 6-Azaump
pdb|1KM0|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70n Complexed With 6-Azaump
pdb|1KM0|C Chain C, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70n Complexed With 6-Azaump
pdb|1KM0|D Chain D, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70n Complexed With 6-Azaump
Length = 247
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|2ZZ5|A Chain A, Orotidine Monophosphate Deacarboxylase D70aK72A DOUBLE
MUTANT FROM M. Thermoautotrophicum Complexed With 6-
Cyano-Ump
pdb|2ZZ5|B Chain B, Orotidine Monophosphate Deacarboxylase D70aK72A DOUBLE
MUTANT FROM M. Thermoautotrophicum Complexed With 6-
Cyano-Ump
Length = 252
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 131 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 189
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 190 GDPGETLRFADAIIVGRSIYLA 211
>pdb|1LOR|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate Complexed
With Bmp
Length = 228
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1KLY|A Chain A, Orotidine Monophosphate Decarboxylase D70g Mutant
Complexed With 6- Azaump
Length = 247
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1KLZ|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant D70a Complexed With Ump
Length = 247
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3RLU|A Chain A, Crystal Structure Of The Mutant K82a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3RLU|B Chain B, Crystal Structure Of The Mutant K82a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
Length = 228
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3SEC|A Chain A, Crystal Structure Of Methanothermobacter
Thermautotrophicus Orotidine 5'-Monophosphate
Decarboxylase Complexed With Pyrazofurin Monophosphate
pdb|3SSJ|A Chain A, Crystal Structure Of Methanothermobacter
Thermautotrophicus Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Fluoro-6-Amino-Ump
pdb|3SW6|A Chain A, Crystal Structure Of Methanothermobacter
Thermautotrophicus Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 5-Fluoro-6-
Azido-Ump
pdb|3THQ|A Chain A, Crystal Structure Of Methanothermobacter
Thermautotrophicus Orotidine 5'-Monophosphate
Decarboxylase Complexed With 6-Amino-Ump
pdb|3THQ|B Chain B, Crystal Structure Of Methanothermobacter
Thermautotrophicus Orotidine 5'-Monophosphate
Decarboxylase Complexed With 6-Amino-Ump
Length = 247
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3SIZ|A Chain A, Crystal Structure Of The Mutant S127a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3SIZ|B Chain B, Crystal Structure Of The Mutant S127a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3SY5|A Chain A, Crystal Structure Of The Mutant S127a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor 6azaump
pdb|3SY5|B Chain B, Crystal Structure Of The Mutant S127a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor 6azaump
Length = 228
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1KM1|A Chain A, Orotidine Monophosphate Decarboxylase Mutant S127a Crystal
Structure
pdb|1KM1|B Chain B, Orotidine Monophosphate Decarboxylase Mutant S127a Crystal
Structure
Length = 247
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1DVJ|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
pdb|1DVJ|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
pdb|1DVJ|C Chain C, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
pdb|1DVJ|D Chain D, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With 6-Azaump
Length = 246
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 127 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 185
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 186 GDPGETLRFADAIIVGRSIYLA 207
>pdb|3G1S|A Chain A, Crystal Structure Of The Mutant D70g Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum
pdb|3G1S|B Chain B, Crystal Structure Of The Mutant D70g Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum
pdb|3G1V|A Chain A, Crystal Structure Of The Mutant D70g Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 5-Fluorouridine 5'-
Monophosphate
pdb|3G1V|B Chain B, Crystal Structure Of The Mutant D70g Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With 5-Fluorouridine 5'-
Monophosphate
pdb|3G1X|A Chain A, Crystal Structure Of The Mutant D70g Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Uridine
5'-Monophosphate
pdb|3G1X|B Chain B, Crystal Structure Of The Mutant D70g Of Orotidine 5'-
Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Uridine
5'-Monophosphate
Length = 228
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1KM4|A Chain A, Crystal Structure Of Odcase Mutant K72a Complexed With Ump
Length = 247
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1KM3|A Chain A, Crystal Structure Of Odcase Mutant K42a Complexed With
6-azaump
Length = 247
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3NQA|A Chain A, Crystal Structure Of The Mutant F100a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQA|B Chain B, Crystal Structure Of The Mutant F100a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3NQ7|A Chain A, Crystal Structure Of The Mutant F71a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQ7|B Chain B, Crystal Structure Of The Mutant F71a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1LOL|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complex With Xmp
pdb|1LOL|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complex With Xmp
pdb|1LP6|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With Cmp
pdb|1LP6|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Complexed With Cmp
Length = 229
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|1KM6|A Chain A, Crystal Structure Of Odcase Mutant D70ak72a Complexed With
Omp
Length = 247
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3P5Y|A Chain A, Crystal Structure Of The Mutant T159a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3P5Y|B Chain B, Crystal Structure Of The Mutant T159a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSARPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3QF0|A Chain A, Crystal Structure Of The Mutant T159v,Y206f Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3QF0|B Chain B, Crystal Structure Of The Mutant T159v,Y206f Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
Length = 228
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSVRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---VFGRAIYSARQIF 370
GDP F AI R IF
Sbjct: 187 GDPGETLRFADAIIVGRSIF 206
>pdb|3P61|A Chain A, Crystal Structure Of The Mutant R160a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3P61|B Chain B, Crystal Structure Of The Mutant R160a Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTAPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3QMT|A Chain A, Crystal Structure Of The Mutant V182a,Y206f Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3QMT|B Chain B, Crystal Structure Of The Mutant V182a,Y206f Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
Length = 228
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S G+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGAGAQG 186
Query: 354 GDPP---VFGRAIYSARQIF 370
GDP F AI R IF
Sbjct: 187 GDPGETLRFADAIIVGRSIF 206
>pdb|3M1Z|A Chain A, Crystal Structure Of The Mutant V182a.V201a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut Complexed With Inhibitor Bmp
pdb|3M1Z|B Chain B, Crystal Structure Of The Mutant V182a.V201a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut Complexed With Inhibitor Bmp
pdb|3M5Y|A Chain A, Crystal Structure Of The Mutant V182a,V201a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut
pdb|3M5Y|B Chain B, Crystal Structure Of The Mutant V182a,V201a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut
Length = 228
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S G+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGAGAQG 186
Query: 354 GDPP---VFGRAIYSARQIF 370
GDP F AI + R I+
Sbjct: 187 GDPGETLRFADAIIAGRSIY 206
>pdb|2YXX|A Chain A, Crystal Structure Analysis Of Diaminopimelate
Decarboxylate (Lysa)
Length = 386
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 10 SSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEH 69
+ V GP C+ D + D LPE+ G + + GAY ++ +N P ++ E+
Sbjct: 307 ADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTXSNNYNSTTRP-AEVLVREN 365
Query: 70 IWLMLKDRLPLTQDHF 85
+ L R D F
Sbjct: 366 GRISLIRRRETEXDIF 381
>pdb|3NQG|A Chain A, Crystal Structure Of The Mutant V155d Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3NQG|B Chain B, Crystal Structure Of The Mutant V155d Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYDGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LTS|A Chain A, Crystal Structure Of The Mutant V182a,I199a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut Complexed With Inhibitor Bmp
pdb|3LTS|B Chain B, Crystal Structure Of The Mutant V182a,I199a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut Complexed With Inhibitor Bmp
pdb|3M5X|A Chain A, Crystal Structure Of The Mutant V182a,I199a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut
pdb|3M5X|B Chain B, Crystal Structure Of The Mutant V182a,I199a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut
Length = 228
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S G+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGAGAQG 186
Query: 354 GDP---------PVFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAAIVGRSIYLA 208
>pdb|3N29|A Chain A, Crystal Structure Of Carboxynorspermidine Decarboxylase
Complexed With Norspermidine From Campylobacter Jejuni
pdb|3N29|B Chain B, Crystal Structure Of Carboxynorspermidine Decarboxylase
Complexed With Norspermidine From Campylobacter Jejuni
Length = 418
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 14 GPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKV 62
G TC D + + ++ +G +++ D YT+ +TFNG +P +
Sbjct: 346 GNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNL 394
>pdb|3P60|A Chain A, Crystal Structure Of The Mutant T159v Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
pdb|3P60|B Chain B, Crystal Structure Of The Mutant T159v Of Orotidine
5'-Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With Inhibitor Bmp
Length = 228
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSVRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LTY|A Chain A, Crystal Structure Of The Mutant V182a,I218a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut Complexed With Inhibitor Bmp
pdb|3LTY|B Chain B, Crystal Structure Of The Mutant V182a,I218a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut Complexed With Inhibitor Bmp
pdb|3M5Z|A Chain A, Crystal Structure Of The Mutant V182a,I218a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut
pdb|3M5Z|B Chain B, Crystal Structure Of The Mutant V182a,I218a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoaut
Length = 228
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S G+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGAGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LHW|A Chain A, Crystal Structure Of The Mutant V182a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LHW|B Chain B, Crystal Structure Of The Mutant V182a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3M41|A Chain A, Crystal Structure Of The Mutant V182a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum
pdb|3M41|B Chain B, Crystal Structure Of The Mutant V182a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum
Length = 228
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S G+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGAGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|3LHV|A Chain A, Crystal Structure Of The Mutant V182a.I199a.V201a Of
Orotidi Monophosphate Decarboxylase From
Methanobacterium Thermoaut Complexed With Inhibitor Bmp
pdb|3LHV|B Chain B, Crystal Structure Of The Mutant V182a.I199a.V201a Of
Orotidi Monophosphate Decarboxylase From
Methanobacterium Thermoaut Complexed With Inhibitor Bmp
pdb|3LHV|C Chain C, Crystal Structure Of The Mutant V182a.I199a.V201a Of
Orotidi Monophosphate Decarboxylase From
Methanobacterium Thermoaut Complexed With Inhibitor Bmp
pdb|3LHV|D Chain D, Crystal Structure Of The Mutant V182a.I199a.V201a Of
Orotidi Monophosphate Decarboxylase From
Methanobacterium Thermoaut Complexed With Inhibitor Bmp
Length = 228
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S G+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGAGAQG 186
Query: 354 GDP---------PVFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAAIAGRSIYLA 208
>pdb|3QMS|A Chain A, Crystal Structure Of The Mutant T159v,V182a,Y206f Of
Orotidine 5'- Monophosphate Decarboxylase From
Methanobacterium Thermoautotrophicum Complexed With The
Inhibitor Bmp
pdb|3QMS|B Chain B, Crystal Structure Of The Mutant T159v,V182a,Y206f Of
Orotidine 5'- Monophosphate Decarboxylase From
Methanobacterium Thermoautotrophicum Complexed With The
Inhibitor Bmp
Length = 228
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P RL RL + + D +S G+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSVRPERLSRLREIIGQDSFLISPGAGAQG 186
Query: 354 GDPP---VFGRAIYSARQIF 370
GDP F AI R IF
Sbjct: 187 GDPGETLRFADAIIVGRSIF 206
>pdb|3QMR|A Chain A, Crystal Structure Of The Mutant R160a,V182a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
pdb|3QMR|B Chain B, Crystal Structure Of The Mutant R160a,V182a Of Orotidine
5'- Monophosphate Decarboxylase From Methanobacterium
Thermoautotrophicum Complexed With The Inhibitor Bmp
Length = 228
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S G+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTAPERLSRLREIIGQDSFLISPGAGAQG 186
Query: 354 GDPP---------VFGRAIYSA 366
GDP + GR+IY A
Sbjct: 187 GDPGETLRFADAIIVGRSIYLA 208
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 17/217 (7%)
Query: 1 YPYRETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIP 60
+P ETLV S +G D N E+ + R G +PV +
Sbjct: 368 FPRIETLVMESTYGGHEDVQPSRNR--AEKELVKTIYSTLRRGGKILIPVFAVGRA---Q 422
Query: 61 KVHAVIEEHIWLMLKDRLPLTQDHFIKENQPVRNDSWDELPHMDDYEDIIPFSYFAYLNC 120
++ V+EE+I + D +P+ D I E + + + E D + I + +++
Sbjct: 423 ELMIVLEEYIRTGIIDEVPVYIDGMIWEANAI-HTARPEYLSKDLRDQIFHMGHNPFIS- 480
Query: 121 YPNVNMKLQNPEDQIYVLDRGNDAVHVMKSIILSGVPVYNY-------PDNIRVLPEFQP 173
++ K+ +++ +++ G ++ + S +L+G Y PDN V +Q
Sbjct: 481 --DIFHKVNGMDERREIVE-GEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQA 537
Query: 174 TISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKE 210
S+ +RI K P D+ ++ VYN N+ E
Sbjct: 538 EGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIE 574
>pdb|3LI0|A Chain A, Crystal Structure Of The Mutant R203a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LI0|B Chain B, Crystal Structure Of The Mutant R203a Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
Length = 228
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 296 HPTAQLVIRIRCDAEVAQ--CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGC 353
HP A++ I+ D E+A+ LG+K P + RL RL + + D +S VG+
Sbjct: 128 HPGAEMFIQGAAD-EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQG 186
Query: 354 GDP 356
GDP
Sbjct: 187 GDP 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,701,274
Number of Sequences: 62578
Number of extensions: 760156
Number of successful extensions: 1553
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 110
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)