Query psy9378
Match_columns 522
No_of_seqs 395 out of 3265
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:34:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0622|consensus 100.0 3.5E-65 7.6E-70 519.2 30.9 311 210-522 55-404 (448)
2 COG0019 LysA Diaminopimelate d 100.0 7.7E-59 1.7E-63 488.7 34.8 318 189-522 8-375 (394)
3 cd06831 PLPDE_III_ODC_like_AZI 100.0 1.7E-58 3.6E-63 488.7 36.9 313 208-522 10-362 (394)
4 cd06830 PLPDE_III_ADC Type III 100.0 2.5E-54 5.3E-59 459.5 33.5 304 207-522 1-390 (409)
5 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 2.2E-53 4.7E-58 446.5 35.4 296 208-522 9-349 (368)
6 TIGR01048 lysA diaminopimelate 100.0 2.6E-53 5.7E-58 452.5 34.7 317 193-522 10-376 (417)
7 PLN02537 diaminopimelate decar 100.0 7.2E-53 1.6E-57 448.5 33.0 312 193-522 2-366 (410)
8 cd06828 PLPDE_III_DapDC Type I 100.0 3.2E-52 7E-57 437.4 36.5 304 209-522 1-354 (373)
9 cd06829 PLPDE_III_CANSDC Type 100.0 1.6E-52 3.5E-57 436.5 31.5 285 211-522 1-326 (346)
10 cd06836 PLPDE_III_ODC_DapDC_li 100.0 9.4E-52 2E-56 435.7 37.0 301 211-522 3-358 (379)
11 PRK11165 diaminopimelate decar 100.0 1E-51 2.2E-56 440.7 34.7 309 193-522 11-378 (420)
12 cd00622 PLPDE_III_ODC Type III 100.0 3.5E-51 7.6E-56 428.4 37.9 307 210-522 1-343 (362)
13 cd06841 PLPDE_III_MccE_like Ty 100.0 1.7E-51 3.6E-56 433.7 34.8 299 207-522 3-357 (379)
14 TIGR03099 dCO2ase_PEP1 pyridox 100.0 1.8E-51 4E-56 435.9 34.9 317 192-522 8-378 (398)
15 cd06810 PLPDE_III_ODC_DapDC_li 100.0 8E-51 1.7E-55 426.1 36.2 303 211-522 1-349 (368)
16 TIGR01047 nspC carboxynorsperm 100.0 2.1E-51 4.6E-56 433.0 30.6 288 210-522 2-340 (380)
17 cd06843 PLPDE_III_PvsE_like Ty 100.0 9.8E-51 2.1E-55 427.6 35.5 301 211-522 2-357 (377)
18 cd06839 PLPDE_III_Btrk_like Ty 100.0 2.9E-50 6.3E-55 424.1 36.8 306 207-522 3-362 (382)
19 PRK08961 bifunctional aspartat 100.0 1.6E-50 3.5E-55 464.6 33.6 363 123-522 426-840 (861)
20 cd06842 PLPDE_III_Y4yA_like Ty 100.0 1.6E-48 3.6E-53 416.5 29.8 298 206-522 5-403 (423)
21 PRK05354 arginine decarboxylas 100.0 3.4E-42 7.3E-47 379.8 32.0 327 182-510 33-511 (634)
22 TIGR01273 speA arginine decarb 100.0 5.1E-42 1.1E-46 378.2 32.2 328 181-510 24-504 (624)
23 PF02784 Orn_Arg_deC_N: Pyrido 100.0 4.7E-40 1E-44 328.0 19.8 214 217-431 1-251 (251)
24 PLN02439 arginine decarboxylas 100.0 2.4E-37 5.2E-42 337.4 30.9 296 214-511 2-439 (559)
25 COG1166 SpeA Arginine decarbox 99.9 1E-24 2.2E-29 229.3 18.6 264 182-446 49-379 (652)
26 cd06808 PLPDE_III Type III Pyr 99.9 1.1E-23 2.4E-28 203.2 20.6 166 221-393 1-195 (211)
27 cd06819 PLPDE_III_LS_D-TA Type 99.9 6.1E-24 1.3E-28 222.4 17.2 241 207-469 3-283 (358)
28 cd00430 PLPDE_III_AR Type III 99.9 7.8E-22 1.7E-26 207.2 27.2 273 212-503 2-308 (367)
29 cd06812 PLPDE_III_DSD_D-TA_lik 99.9 8.2E-22 1.8E-26 207.6 24.6 176 207-390 2-215 (374)
30 cd06818 PLPDE_III_cryptic_DSD 99.9 1.5E-20 3.4E-25 198.7 19.0 241 210-468 2-299 (382)
31 cd06820 PLPDE_III_LS_D-TA_like 99.8 3.6E-19 7.7E-24 186.2 21.3 172 210-390 2-209 (353)
32 cd06821 PLPDE_III_D-TA Type II 99.8 6.8E-19 1.5E-23 184.6 21.8 175 206-388 4-216 (361)
33 KOG0622|consensus 99.8 6.6E-20 1.4E-24 188.2 6.2 76 4-79 362-437 (448)
34 cd06811 PLPDE_III_yhfX_like Ty 99.8 2.3E-17 5E-22 174.5 25.5 217 207-444 24-288 (382)
35 cd06813 PLPDE_III_DSD_D-TA_lik 99.8 3.3E-18 7.1E-23 181.4 18.7 181 206-390 6-240 (388)
36 PRK00053 alr alanine racemase; 99.8 9.1E-17 2E-21 168.9 23.3 241 211-468 3-283 (363)
37 TIGR00492 alr alanine racemase 99.8 3.6E-17 7.8E-22 172.1 19.8 242 212-468 3-287 (367)
38 PRK13340 alanine racemase; Rev 99.7 2.4E-15 5.2E-20 160.5 27.1 234 211-468 40-321 (406)
39 PF00278 Orn_DAP_Arg_deC: Pyri 99.7 9.9E-18 2.1E-22 147.6 4.9 63 3-65 53-116 (116)
40 cd06826 PLPDE_III_AR2 Type III 99.7 3.3E-15 7.1E-20 157.3 23.4 235 213-469 3-282 (365)
41 cd06831 PLPDE_III_ODC_like_AZI 99.6 1.6E-16 3.5E-21 168.7 7.5 71 6-76 322-392 (394)
42 cd07376 PLPDE_III_DSD_D-TA_lik 99.6 8.3E-14 1.8E-18 145.3 24.2 212 220-470 1-267 (345)
43 cd00635 PLPDE_III_YBL036c_like 99.6 1.1E-14 2.4E-19 142.9 16.3 163 216-388 3-200 (222)
44 cd06827 PLPDE_III_AR_proteobac 99.6 3.6E-14 7.9E-19 148.8 18.8 235 213-469 3-275 (354)
45 cd06825 PLPDE_III_VanT Type II 99.5 7.7E-13 1.7E-17 139.5 22.6 235 213-469 3-284 (368)
46 cd06817 PLPDE_III_DSD Type III 99.5 3.5E-12 7.6E-17 135.3 22.1 230 208-466 3-295 (389)
47 PLN02537 diaminopimelate decar 99.5 1.1E-14 2.4E-19 155.5 3.1 72 6-77 326-397 (410)
48 TIGR01047 nspC carboxynorsperm 99.5 2.1E-14 4.5E-19 152.0 4.6 71 6-76 300-370 (380)
49 cd06814 PLPDE_III_DSD_D-TA_lik 99.5 1.8E-12 3.9E-17 137.2 19.1 173 208-390 6-226 (379)
50 cd06815 PLPDE_III_AR_like_1 Ty 99.4 2E-12 4.4E-17 135.6 16.5 165 212-387 2-197 (353)
51 PF01168 Ala_racemase_N: Alani 99.4 1.8E-12 3.9E-17 126.3 13.9 162 216-387 1-191 (218)
52 TIGR01048 lysA diaminopimelate 99.4 6E-14 1.3E-18 150.0 2.6 71 6-77 336-406 (417)
53 cd06836 PLPDE_III_ODC_DapDC_li 99.4 1.3E-13 2.9E-18 145.8 5.1 59 7-65 319-377 (379)
54 cd06829 PLPDE_III_CANSDC Type 99.4 2.2E-13 4.9E-18 142.4 6.1 60 6-65 286-345 (346)
55 COG0787 Alr Alanine racemase [ 99.4 4.4E-11 9.5E-16 124.7 21.8 209 213-447 6-250 (360)
56 cd06840 PLPDE_III_Bif_AspK_Dap 99.4 3.6E-13 7.9E-18 142.0 5.2 58 7-64 310-367 (368)
57 cd06843 PLPDE_III_PvsE_like Ty 99.4 3.7E-13 8E-18 142.2 5.2 59 6-64 317-376 (377)
58 cd06839 PLPDE_III_Btrk_like Ty 99.4 5.1E-13 1.1E-17 141.1 5.2 59 6-64 322-381 (382)
59 PRK11165 diaminopimelate decar 99.3 2.5E-13 5.4E-18 145.6 2.5 70 7-77 332-408 (420)
60 cd00622 PLPDE_III_ODC Type III 99.3 8.6E-13 1.9E-17 138.5 6.3 61 5-65 301-362 (362)
61 COG0019 LysA Diaminopimelate d 99.3 6.5E-13 1.4E-17 140.8 5.2 60 5-64 333-393 (394)
62 TIGR03099 dCO2ase_PEP1 pyridox 99.3 7.5E-13 1.6E-17 140.8 5.3 59 6-64 338-397 (398)
63 cd06810 PLPDE_III_ODC_DapDC_li 99.3 1.1E-12 2.5E-17 137.7 5.9 60 6-65 309-368 (368)
64 cd06828 PLPDE_III_DapDC Type I 99.3 6.8E-13 1.5E-17 139.6 4.1 59 6-64 314-372 (373)
65 cd06830 PLPDE_III_ADC Type III 99.3 7.8E-13 1.7E-17 141.4 4.6 59 6-64 339-408 (409)
66 cd06841 PLPDE_III_MccE_like Ty 99.2 7.7E-12 1.7E-16 132.3 6.5 61 6-67 317-377 (379)
67 cd06824 PLPDE_III_Yggs_like Py 99.2 5.9E-10 1.3E-14 109.8 16.9 159 219-387 7-200 (224)
68 PRK08961 bifunctional aspartat 99.2 1.1E-11 2.5E-16 143.7 5.2 60 6-65 800-859 (861)
69 PRK03646 dadX alanine racemase 99.2 8.9E-10 1.9E-14 115.8 18.9 228 212-468 4-275 (355)
70 PF00278 Orn_DAP_Arg_deC: Pyri 99.2 6.7E-11 1.5E-15 104.0 8.4 87 434-522 1-97 (116)
71 PRK11930 putative bifunctional 99.2 5.4E-10 1.2E-14 129.5 17.3 252 196-468 443-740 (822)
72 cd06842 PLPDE_III_Y4yA_like Ty 99.2 1.1E-11 2.4E-16 133.1 3.1 58 7-64 362-422 (423)
73 TIGR00044 pyridoxal phosphate 99.0 1.9E-08 4.1E-13 99.5 18.6 159 219-387 9-204 (229)
74 COG3616 Predicted amino acid a 98.9 1.5E-08 3.2E-13 106.0 12.3 176 206-387 13-217 (368)
75 COG3457 Predicted amino acid r 98.8 2E-07 4.4E-12 94.1 15.6 209 211-447 3-259 (353)
76 cd06822 PLPDE_III_YBL036c_euk 97.8 0.00018 3.9E-09 71.2 12.1 160 218-387 5-204 (227)
77 COG0325 Predicted enzyme with 97.1 0.022 4.8E-07 56.0 16.2 159 218-386 7-200 (228)
78 PF07745 Glyco_hydro_53: Glyco 92.1 2.4 5.1E-05 44.5 12.8 97 327-425 59-179 (332)
79 PF01261 AP_endonuc_2: Xylose 90.9 0.75 1.6E-05 43.4 7.2 101 327-432 28-140 (213)
80 KOG3157|consensus 90.2 1.9 4.1E-05 42.0 9.0 98 282-391 103-214 (244)
81 PRK05354 arginine decarboxylas 89.0 0.59 1.3E-05 53.1 5.5 63 4-66 490-563 (634)
82 PRK01060 endonuclease IV; Prov 88.9 1.7 3.6E-05 43.8 8.2 94 327-424 48-146 (281)
83 COG3867 Arabinogalactan endo-1 87.9 20 0.00043 37.1 14.8 145 270-421 48-219 (403)
84 PRK02308 uvsE putative UV dama 85.2 3.3 7.3E-05 42.8 8.1 139 283-431 44-196 (303)
85 cd07948 DRE_TIM_HCS Saccharomy 84.2 10 0.00022 38.5 10.9 69 214-283 17-90 (262)
86 PRK13210 putative L-xylulose 5 82.6 7.7 0.00017 38.9 9.4 99 322-425 49-154 (284)
87 PRK13209 L-xylulose 5-phosphat 81.7 7.7 0.00017 39.0 9.0 101 320-425 52-159 (283)
88 PRK12677 xylose isomerase; Pro 81.0 10 0.00022 40.7 9.9 96 328-425 69-180 (384)
89 PRK09856 fructoselysine 3-epim 81.0 8.8 0.00019 38.4 9.1 95 327-425 48-150 (275)
90 TIGR03234 OH-pyruv-isom hydrox 80.4 13 0.00029 36.7 10.1 94 327-425 40-144 (254)
91 TIGR00542 hxl6Piso_put hexulos 80.0 11 0.00023 38.0 9.3 99 321-424 48-153 (279)
92 cd02072 Glm_B12_BD B12 binding 79.6 19 0.0004 32.6 9.7 85 320-426 33-117 (128)
93 TIGR01501 MthylAspMutase methy 76.7 24 0.00053 32.1 9.6 60 320-391 35-94 (134)
94 PF03851 UvdE: UV-endonuclease 76.7 5.9 0.00013 40.5 6.2 68 333-404 94-170 (275)
95 PLN02439 arginine decarboxylas 75.7 3.9 8.5E-05 45.9 5.1 63 4-66 417-489 (559)
96 TIGR02631 xylA_Arthro xylose i 75.1 32 0.0007 36.8 11.7 94 329-425 71-181 (382)
97 TIGR02635 RhaI_grampos L-rhamn 74.0 32 0.00069 36.9 11.2 93 327-424 70-177 (378)
98 PTZ00372 endonuclease 4-like p 72.5 18 0.00038 39.2 8.8 93 327-423 177-274 (413)
99 TIGR01273 speA arginine decarb 72.3 6.5 0.00014 44.8 5.8 63 4-66 483-556 (624)
100 smart00518 AP2Ec AP endonuclea 71.7 19 0.00041 36.0 8.6 90 327-424 46-140 (273)
101 COG1082 IolE Sugar phosphate i 69.7 47 0.001 32.8 10.9 96 327-424 46-146 (274)
102 TIGR00587 nfo apurinic endonuc 68.2 19 0.00042 36.3 7.8 92 328-425 48-147 (274)
103 TIGR03471 HpnJ hopanoid biosyn 68.0 1.5E+02 0.0032 32.5 15.1 67 212-279 223-299 (472)
104 PRK02261 methylaspartate mutas 68.0 53 0.0011 29.9 9.8 60 320-391 37-96 (137)
105 cd03174 DRE_TIM_metallolyase D 67.1 77 0.0017 31.3 11.8 29 322-351 172-201 (265)
106 PRK09997 hydroxypyruvate isome 65.8 1.4E+02 0.0031 29.4 13.8 30 377-406 197-230 (258)
107 PF11823 DUF3343: Protein of u 65.2 17 0.00038 29.1 5.5 64 280-346 5-70 (73)
108 cd00019 AP2Ec AP endonuclease 64.4 33 0.00072 34.4 8.6 25 355-379 76-100 (279)
109 COG1830 FbaB DhnA-type fructos 63.1 1.7E+02 0.0037 29.8 13.1 112 265-390 44-156 (265)
110 PRK09057 coproporphyrinogen II 59.7 1.2E+02 0.0027 32.2 12.3 62 209-271 63-131 (380)
111 PRK06852 aldolase; Validated 59.6 2.2E+02 0.0049 29.6 14.6 106 266-380 61-170 (304)
112 PRK09250 fructose-bisphosphate 59.5 51 0.0011 34.8 9.0 110 267-389 94-206 (348)
113 TIGR00629 uvde UV damage endon 58.9 52 0.0011 34.3 8.9 117 283-406 48-181 (312)
114 cd07939 DRE_TIM_NifV Streptomy 58.9 1.5E+02 0.0033 29.6 12.2 28 323-352 166-194 (259)
115 PF01436 NHL: NHL repeat; Int 58.3 9.1 0.0002 24.9 2.1 17 131-147 11-27 (28)
116 COG0635 HemN Coproporphyrinoge 57.3 27 0.00058 37.9 6.8 69 356-427 64-135 (416)
117 PRK14040 oxaloacetate decarbox 56.9 82 0.0018 35.8 10.8 121 222-353 64-211 (593)
118 PRK09240 thiH thiamine biosynt 56.4 64 0.0014 34.3 9.4 89 215-307 134-259 (371)
119 PRK09989 hypothetical protein; 56.1 89 0.0019 31.0 9.9 92 328-424 42-144 (258)
120 PRK09997 hydroxypyruvate isome 55.1 60 0.0013 32.2 8.5 94 327-424 41-144 (258)
121 TIGR02026 BchE magnesium-proto 53.9 2.7E+02 0.006 30.7 14.2 15 216-230 222-236 (497)
122 cd07943 DRE_TIM_HOA 4-hydroxy- 52.3 2.6E+02 0.0056 28.0 14.7 29 322-351 167-196 (263)
123 PRK08207 coproporphyrinogen II 49.9 4E+02 0.0087 29.6 17.4 61 210-271 227-296 (488)
124 cd00019 AP2Ec AP endonuclease 49.9 1.3E+02 0.0027 30.2 10.0 96 327-430 86-183 (279)
125 PRK09058 coproporphyrinogen II 49.5 2.6E+02 0.0056 30.5 12.9 64 209-273 122-192 (449)
126 PRK00366 ispG 4-hydroxy-3-meth 48.5 1.3E+02 0.0029 31.9 9.9 66 302-379 104-175 (360)
127 cd00430 PLPDE_III_AR Type III 47.6 13 0.00028 39.2 2.4 34 8-43 298-332 (367)
128 PRK08227 autoinducer 2 aldolas 47.6 1.3E+02 0.0027 30.7 9.4 98 268-380 46-143 (264)
129 TIGR02629 L_rham_iso_rhiz L-rh 47.2 1.7E+02 0.0037 31.7 10.7 95 328-425 100-217 (412)
130 PRK08445 hypothetical protein; 46.4 3.2E+02 0.0069 28.8 12.7 145 212-369 69-223 (348)
131 PRK14042 pyruvate carboxylase 45.1 2.9E+02 0.0063 31.5 12.7 120 222-353 63-210 (596)
132 PRK09249 coproporphyrinogen II 44.7 2.4E+02 0.0053 30.7 11.8 48 210-258 111-162 (453)
133 PRK05904 coproporphyrinogen II 44.4 3.3E+02 0.0072 28.7 12.5 61 210-273 65-132 (353)
134 PRK05628 coproporphyrinogen II 44.4 4E+02 0.0086 28.1 13.1 61 210-271 68-135 (375)
135 PRK07379 coproporphyrinogen II 43.9 4.1E+02 0.0089 28.5 13.2 61 210-271 75-142 (400)
136 PF00977 His_biosynth: Histidi 43.2 2.1E+02 0.0044 28.2 10.1 101 246-351 61-171 (229)
137 TIGR03822 AblA_like_2 lysine-2 42.3 2.2E+02 0.0048 29.6 10.6 48 210-259 145-199 (321)
138 cd03174 DRE_TIM_metallolyase D 42.3 2.4E+02 0.0053 27.7 10.6 146 211-368 11-186 (265)
139 TIGR00539 hemN_rel putative ox 42.1 4.3E+02 0.0094 27.7 13.7 63 210-273 60-129 (360)
140 TIGR00640 acid_CoA_mut_C methy 42.0 2.4E+02 0.0052 25.4 9.4 54 327-390 41-94 (132)
141 PRK06552 keto-hydroxyglutarate 41.9 3.5E+02 0.0075 26.5 15.0 19 265-283 117-135 (213)
142 COG0646 MetH Methionine syntha 40.9 2.9E+02 0.0064 28.7 10.7 128 268-410 147-285 (311)
143 PRK12581 oxaloacetate decarbox 40.8 4E+02 0.0086 29.5 12.5 117 222-352 72-218 (468)
144 cd07937 DRE_TIM_PC_TC_5S Pyruv 40.8 4E+02 0.0087 26.9 12.1 162 222-406 58-246 (275)
145 cd07945 DRE_TIM_CMS Leptospira 39.6 3.3E+02 0.0071 27.8 11.1 101 246-352 21-141 (280)
146 cd07940 DRE_TIM_IPMS 2-isoprop 39.3 3.1E+02 0.0068 27.5 10.9 28 323-351 170-200 (268)
147 PRK05692 hydroxymethylglutaryl 38.7 2.5E+02 0.0054 28.8 10.1 68 211-281 18-96 (287)
148 PRK05718 keto-hydroxyglutarate 38.5 2E+02 0.0043 28.3 8.9 75 220-296 52-128 (212)
149 COG2100 Predicted Fe-S oxidore 37.9 4.2E+02 0.009 28.1 11.3 76 213-288 138-227 (414)
150 TIGR02090 LEU1_arch isopropylm 37.3 4.7E+02 0.01 27.6 12.3 29 322-352 167-196 (363)
151 cd02803 OYE_like_FMN_family Ol 36.8 3.8E+02 0.0081 27.5 11.3 56 287-352 196-252 (327)
152 COG5564 Predicted TIM-barrel e 36.2 3.4E+02 0.0073 27.1 9.8 107 246-358 103-235 (276)
153 TIGR01108 oadA oxaloacetate de 36.1 5.9E+02 0.013 29.0 13.4 119 222-353 58-205 (582)
154 TIGR01210 conserved hypothetic 35.9 5.1E+02 0.011 26.8 14.0 29 321-351 151-179 (313)
155 PRK13399 fructose-1,6-bisphosp 35.9 2E+02 0.0043 30.6 8.9 49 246-294 238-287 (347)
156 PLN02746 hydroxymethylglutaryl 35.9 3E+02 0.0064 29.2 10.3 35 247-281 103-138 (347)
157 PRK06294 coproporphyrinogen II 35.5 5.6E+02 0.012 27.1 13.4 122 282-428 70-200 (370)
158 PRK09282 pyruvate carboxylase 35.5 5.5E+02 0.012 29.3 13.0 121 220-353 61-210 (592)
159 PRK08508 biotin synthase; Prov 35.0 1.9E+02 0.0042 29.3 8.6 174 213-426 36-228 (279)
160 TIGR00268 conserved hypothetic 34.9 3.2E+02 0.0069 27.2 10.1 174 202-387 57-248 (252)
161 PRK13774 formimidoylglutamase; 34.6 1.2E+02 0.0026 31.4 7.1 82 265-348 194-286 (311)
162 PRK07328 histidinol-phosphatas 34.2 4.6E+02 0.01 26.2 11.2 146 217-379 61-253 (269)
163 TIGR03471 HpnJ hopanoid biosyn 33.5 2.7E+02 0.0058 30.4 10.0 107 216-344 258-371 (472)
164 PRK05628 coproporphyrinogen II 33.5 5.9E+02 0.013 26.8 12.6 91 330-428 109-205 (375)
165 PRK08195 4-hyroxy-2-oxovalerat 32.6 5.2E+02 0.011 27.1 11.6 117 222-348 65-197 (337)
166 TIGR00612 ispG_gcpE 1-hydroxy- 32.5 3.4E+02 0.0074 28.7 9.8 116 257-385 17-172 (346)
167 PF04551 GcpE: GcpE protein; 31.9 1.4E+02 0.003 31.8 6.9 80 302-385 97-181 (359)
168 PRK13523 NADPH dehydrogenase N 31.7 1E+02 0.0023 32.3 6.1 45 298-352 207-251 (337)
169 PRK13347 coproporphyrinogen II 31.6 7.1E+02 0.015 27.1 13.3 48 210-258 112-163 (453)
170 COG0821 gcpE 1-hydroxy-2-methy 31.5 4.6E+02 0.0099 27.8 10.5 37 302-351 98-134 (361)
171 TIGR00423 radical SAM domain p 31.3 5.9E+02 0.013 26.1 13.8 180 212-404 32-226 (309)
172 PRK08599 coproporphyrinogen II 31.1 6.5E+02 0.014 26.5 13.3 61 210-271 60-127 (377)
173 cd04735 OYE_like_4_FMN Old yel 30.9 2E+02 0.0044 30.2 8.2 43 297-347 214-256 (353)
174 TIGR02660 nifV_homocitr homoci 30.9 5.3E+02 0.012 27.2 11.5 28 323-352 169-197 (365)
175 PRK08208 coproporphyrinogen II 30.6 1.2E+02 0.0026 32.9 6.6 48 210-258 100-152 (430)
176 PRK09196 fructose-1,6-bisphosp 30.5 2.5E+02 0.0054 29.8 8.7 48 247-294 239-287 (347)
177 TIGR03128 RuMP_HxlA 3-hexulose 30.3 4.8E+02 0.01 24.7 12.5 84 222-308 40-135 (206)
178 TIGR00238 KamA family protein. 30.2 3E+02 0.0065 28.7 9.3 85 210-296 168-277 (331)
179 cd08556 GDPD Glycerophosphodie 30.1 2.4E+02 0.0053 25.8 7.9 148 140-296 25-181 (189)
180 PRK07709 fructose-bisphosphate 29.9 2.3E+02 0.005 29.1 8.2 75 268-351 8-88 (285)
181 COG0635 HemN Coproporphyrinoge 29.4 1.4E+02 0.003 32.4 6.8 55 209-264 95-157 (416)
182 PRK13772 formimidoylglutamase; 29.1 4.4E+02 0.0095 27.3 10.2 82 265-348 198-290 (314)
183 PF01261 AP_endonuc_2: Xylose 28.9 2.2E+02 0.0047 26.3 7.4 95 327-430 72-171 (213)
184 PRK08898 coproporphyrinogen II 28.7 5.7E+02 0.012 27.3 11.3 64 209-273 81-151 (394)
185 PRK01722 formimidoylglutamase; 28.6 2E+02 0.0044 29.8 7.7 81 266-348 198-289 (320)
186 PRK11858 aksA trans-homoaconit 28.4 7E+02 0.015 26.5 11.9 25 318-343 105-133 (378)
187 TIGR03581 EF_0839 conserved hy 28.4 99 0.0021 30.6 4.8 67 268-348 139-211 (236)
188 COG0269 SgbH 3-hexulose-6-phos 28.2 6E+02 0.013 25.2 16.8 169 209-410 34-214 (217)
189 TIGR01229 rocF_arginase argina 28.1 1.9E+02 0.0042 29.6 7.4 82 265-348 176-269 (300)
190 TIGR01696 deoB phosphopentomut 27.7 3.6E+02 0.0078 29.0 9.4 82 319-405 209-298 (381)
191 PRK05660 HemN family oxidoredu 27.6 1.7E+02 0.0037 31.1 7.0 74 210-284 67-163 (378)
192 TIGR01227 hutG formimidoylglut 27.4 2.1E+02 0.0045 29.5 7.4 83 265-349 190-283 (307)
193 TIGR01212 radical SAM protein, 27.3 4E+02 0.0087 27.4 9.5 50 328-380 125-179 (302)
194 PF01301 Glyco_hydro_35: Glyco 27.2 82 0.0018 32.8 4.4 96 320-418 19-140 (319)
195 TIGR01230 agmatinase agmatinas 26.9 2.8E+02 0.0061 28.0 8.2 82 265-349 164-250 (275)
196 PF00150 Cellulase: Cellulase 26.6 1.7E+02 0.0036 28.7 6.5 60 327-387 22-84 (281)
197 TIGR00542 hxl6Piso_put hexulos 26.5 5.2E+02 0.011 25.7 10.1 90 328-427 96-186 (279)
198 TIGR01856 hisJ_fam histidinol 26.0 1.3E+02 0.0029 29.9 5.6 38 247-285 188-236 (253)
199 PTZ00372 endonuclease 4-like p 25.9 4.2E+02 0.0091 28.8 9.6 65 267-337 221-299 (413)
200 PRK05339 PEP synthetase regula 25.7 6.8E+02 0.015 25.6 10.5 73 318-410 192-264 (269)
201 TIGR03699 mena_SCO4550 menaqui 25.6 5.4E+02 0.012 26.6 10.3 138 213-364 69-217 (340)
202 COG5012 Predicted cobalamin bi 25.6 2.3E+02 0.005 28.2 6.9 55 328-392 144-198 (227)
203 PRK14456 ribosomal RNA large s 25.2 7.5E+02 0.016 26.4 11.3 127 210-343 183-346 (368)
204 PRK08105 flavodoxin; Provision 24.8 5.3E+02 0.012 23.4 11.7 112 234-377 3-115 (149)
205 PRK13776 formimidoylglutamase; 24.2 2.4E+02 0.0051 29.4 7.2 81 266-348 200-291 (318)
206 PRK06582 coproporphyrinogen II 24.2 8.9E+02 0.019 25.8 12.7 124 209-351 70-205 (390)
207 PF00682 HMGL-like: HMGL-like 24.2 5.9E+02 0.013 24.6 9.8 23 327-349 167-190 (237)
208 cd04734 OYE_like_3_FMN Old yel 24.1 4E+02 0.0087 27.9 9.0 52 290-351 199-252 (343)
209 PRK12858 tagatose 1,6-diphosph 23.9 6.9E+02 0.015 26.4 10.6 136 267-409 52-195 (340)
210 PRK13210 putative L-xylulose 5 23.7 6E+02 0.013 25.1 9.9 60 328-387 96-156 (284)
211 PRK02048 4-hydroxy-3-methylbut 23.6 5.2E+02 0.011 29.5 9.9 104 266-385 43-204 (611)
212 PRK09197 fructose-bisphosphate 23.6 9.1E+02 0.02 25.7 13.0 140 268-427 11-169 (350)
213 TIGR01521 FruBisAldo_II_B fruc 23.6 3.6E+02 0.0078 28.7 8.3 48 248-295 238-286 (347)
214 TIGR00539 hemN_rel putative ox 23.5 8.6E+02 0.019 25.4 12.3 92 330-429 101-198 (360)
215 cd07948 DRE_TIM_HCS Saccharomy 23.4 7.7E+02 0.017 24.8 11.2 120 219-352 48-196 (262)
216 PRK05835 fructose-bisphosphate 23.2 8.7E+02 0.019 25.3 11.7 128 267-428 6-139 (307)
217 TIGR00538 hemN oxygen-independ 23.0 1.5E+02 0.0033 32.3 5.7 74 210-284 111-207 (455)
218 PRK12737 gatY tagatose-bisphos 22.8 3E+02 0.0065 28.3 7.4 41 268-308 8-52 (284)
219 TIGR03217 4OH_2_O_val_ald 4-hy 22.7 9E+02 0.019 25.3 15.0 163 222-406 64-242 (333)
220 PRK00278 trpC indole-3-glycero 22.6 7.9E+02 0.017 24.6 11.1 14 333-346 174-187 (260)
221 TIGR02090 LEU1_arch isopropylm 22.4 8.2E+02 0.018 25.8 11.0 26 318-343 101-129 (363)
222 PRK11858 aksA trans-homoaconit 22.4 9.5E+02 0.021 25.5 13.1 67 215-281 22-92 (378)
223 PRK13209 L-xylulose 5-phosphat 22.3 4.8E+02 0.011 25.9 8.9 91 328-428 101-192 (283)
224 PRK07535 methyltetrahydrofolat 22.1 8.2E+02 0.018 24.6 15.4 59 328-389 105-165 (261)
225 COG4943 Predicted signal trans 22.0 2.9E+02 0.0062 30.7 7.3 140 235-405 356-515 (524)
226 PRK08673 3-deoxy-7-phosphohept 21.9 9.5E+02 0.021 25.3 13.5 149 165-339 62-227 (335)
227 COG4952 Predicted sugar isomer 21.8 1.6E+02 0.0035 30.4 5.1 66 344-409 138-208 (430)
228 PLN02615 arginase 21.3 7.5E+02 0.016 26.0 10.3 80 265-348 221-308 (338)
229 TIGR03311 Se_dep_Molyb_1 selen 21.1 1.4E+02 0.003 35.6 5.2 56 344-405 355-410 (848)
230 PF01136 Peptidase_U32: Peptid 21.0 7.5E+02 0.016 23.8 11.0 82 219-306 2-92 (233)
231 PRK09004 FMN-binding protein M 21.0 6.3E+02 0.014 22.9 11.5 111 234-378 3-114 (146)
232 TIGR01182 eda Entner-Doudoroff 21.0 7.8E+02 0.017 24.0 13.2 23 321-348 156-178 (204)
233 PRK14466 ribosomal RNA large s 20.6 1E+03 0.022 25.2 13.2 47 209-259 157-208 (345)
234 TIGR02668 moaA_archaeal probab 20.6 7.6E+02 0.016 24.9 10.1 15 327-341 135-149 (302)
235 COG0386 BtuE Glutathione perox 20.6 1.3E+02 0.0028 28.3 3.8 46 299-353 25-72 (162)
236 TIGR03551 F420_cofH 7,8-dideme 20.5 6.1E+02 0.013 26.4 9.5 174 217-409 15-219 (343)
237 PF09872 DUF2099: Uncharacteri 20.4 8.3E+02 0.018 24.8 9.6 88 234-334 115-211 (258)
238 PRK06801 hypothetical protein; 20.4 4E+02 0.0086 27.4 7.8 41 268-308 8-52 (286)
239 PRK08599 coproporphyrinogen II 20.4 6E+02 0.013 26.7 9.5 92 329-428 100-197 (377)
240 PRK00915 2-isopropylmalate syn 20.3 2.9E+02 0.0063 30.8 7.3 25 317-342 108-136 (513)
241 TIGR03700 mena_SCO4494 putativ 20.3 8.7E+02 0.019 25.4 10.6 167 217-409 24-228 (351)
242 cd04733 OYE_like_2_FMN Old yel 20.2 1.6E+02 0.0035 30.7 5.1 54 289-352 206-260 (338)
243 PRK00043 thiE thiamine-phospha 20.1 6.9E+02 0.015 23.5 9.1 33 250-282 97-129 (212)
244 PF12138 Spherulin4: Spherulat 20.1 8.9E+02 0.019 24.3 13.3 134 287-432 19-156 (253)
No 1
>KOG0622|consensus
Probab=100.00 E-value=3.5e-65 Score=519.22 Aligned_cols=311 Identities=49% Similarity=0.845 Sum_probs=292.5
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------CC
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KP 266 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K~ 266 (522)
..||||+|+..|.+++++|++.+|+++++||||||++|.|+++|+++|+||+||| |+
T Consensus 55 ~~aFfv~Dl~~I~Rkl~~w~~~LprV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~riIyanpcK~ 134 (448)
T KOG0622|consen 55 KQAFFVADLGAIERKLEAWKKALPRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERIIYANPCKQ 134 (448)
T ss_pred cCceEEecHHHHHHHHHHHHHhcccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHHHHHhcCCChHHeEecCCCcc
Confidence 6899999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEE
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVS 346 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Glh 346 (522)
.++|++|.++||...+|||+.||.++.+.+|+++++|||+++++++++.++.|||++.+ ++..+|+.+|+++++++|+|
T Consensus 135 ~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIatdds~a~~~l~~KFG~~~~-~~~~lLd~ak~l~lnvvGvs 213 (448)
T KOG0622|consen 135 VSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIATDDSTATCRLNLKFGCSLD-NCRHLLDMAKELELNVVGVS 213 (448)
T ss_pred HHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEccCCCcccccccCccCCCHH-HHHHHHHHHHHcCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC--CCHHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 347 FHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG--YSMNRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 347 fH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~--~~~~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
||+||.+.+++.|+++++.++.+++++++.|+++.+|||||||++++. ..|+++++.|+.+++.|||.+ +++||+||
T Consensus 214 fHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~~~fe~i~~~In~ald~~Fp~~-~v~iiaEp 292 (448)
T KOG0622|consen 214 FHVGSGCTDLQAYRDAISDARNVFDMGAELGFEMDILDIGGGFPGDEGHAVVFEEIADVINTALDLYFPSG-GVDIIAEP 292 (448)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEeecCCCCCCccchhhhhhhHHHHHHHHHHHhCCCC-CceEEecc
Confidence 999999999999999999999999999999999999999999999874 459999999999999999944 89999999
Q ss_pred cceeeccceeEEEEEEEEEeeCCCCCC-----CCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeec
Q psy9378 425 GRYYVASAFTLATLIHSKRDILGANSS-----VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFL 499 (522)
Q Consensus 425 GR~lva~ag~Lvt~V~~~K~~~~~~~g-----~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~G 499 (522)
|||+|++|++|+++|+++|+......+ .+...+||+|||+|++|+|+|||+++++|.+.+....++..+.++|+|
T Consensus 293 GRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL~D~~~~i~~~~~~~~e~e~~~~ssIwG 372 (448)
T KOG0622|consen 293 GRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCILFDHQHPIPLVVKDPSEEEPLYKSSIWG 372 (448)
T ss_pred chheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeechhhhcccCCcccccCCCccccceeeeeeec
Confidence 999999999999999999988653211 234679999999999999999999999998888877777799999999
Q ss_pred CCCCCcccccc---------CcEEEEeccccC
Q psy9378 500 QESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 500 p~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
|||.+.|+++- ||||.|.--|||
T Consensus 373 PtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAY 404 (448)
T KOG0622|consen 373 PTCDGLDVIAEDCLLPQLNVGDWLVFENMGAY 404 (448)
T ss_pred CCcchHHHHHhhccCCCCCccCeEEEccCCcc
Confidence 99999998764 799999888887
No 2
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-59 Score=488.65 Aligned_cols=318 Identities=27% Similarity=0.368 Sum_probs=284.2
Q ss_pred cCCCCCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCC--CeEEeeecCCCcHHHHHHHHHcCCeEEEEc--
Q psy9378 189 PRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPR--VDPYYAVKCNDSQMVLEVLAALGTGFDCAS-- 264 (522)
Q Consensus 189 ~~~~~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~--~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-- 264 (522)
++.+.+++.++..++ ++++|||||||++.|++|+++++++|++ ++++||+|||+++.|+++|++.|.||||+|
T Consensus 8 ~~~l~~~~~~~~~l~---~~~gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~g 84 (394)
T COG0019 8 DGELTIEGVDLPALA---EEFGTPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLG 84 (394)
T ss_pred ccceeecCccHHHHh---hccCCCEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcCCCCHHHHHHHHHhCCCceecCHH
Confidence 344567788888887 8899999999999999999999999986 799999999999999999999999999999
Q ss_pred ---------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCC--CeEEEEEeeCCC------cccCC
Q psy9378 265 ---------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPT--AQLVIRIRCDAE------VAQCQ 315 (522)
Q Consensus 265 ---------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~--~~V~LRIn~~~~------~~~~~ 315 (522)
|+++||++|+++|+.+|+|||++||++|.++++. ++|.|||||+.+ .+++.
T Consensus 85 El~~al~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~~~~v~lRInP~~~~~th~~~~tg~ 164 (394)
T COG0019 85 ELELALAAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGLVARVSLRINPGVSAGTHEYIATGG 164 (394)
T ss_pred HHHHHHHcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHHhccccCceEEEEECCCCCCccCccccCCc
Confidence 9999999999999988999999999999999987 899999999843 35778
Q ss_pred CCCccccCcCCCHHHHHHHHhh-CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHH-hhcCCCccEEEEcCCCCCCC
Q psy9378 316 LGMKFGCDPISEAPRLLRLAKS-LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLG-NSLGFSMRVLDLGGGYPGYT 393 (522)
Q Consensus 316 ~~sKFGi~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~-~~~G~~l~~LdIGGGf~~~~ 393 (522)
..+|||++++ ++.++++.+++ .++++.|||||+|||+.|.+.|.++++++.++++.+ ++.|+++++||+||||++.|
T Consensus 165 ~~sKFG~~~~-~a~~~~~~~~~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~gi~Y 243 (394)
T COG0019 165 KSSKFGISPE-EALDVLERAAKLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGGGLGITY 243 (394)
T ss_pred cccccCCCHH-HHHHHHHHHHhcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCCcCcCC
Confidence 8899999998 88888888765 699999999999999999999999999999999877 57899999999999999876
Q ss_pred C-----CCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcc
Q psy9378 394 G-----YSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSF 468 (522)
Q Consensus 394 ~-----~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~ 468 (522)
. .+++++++.+.+.++++ ...++|++||||++|++||+|+|+|..+|++++ ++|+++|+||++++
T Consensus 244 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~-------~~~v~vD~gm~~~~ 313 (394)
T COG0019 244 EDEYDPPDLAAYAKALKEAFGEY---AEDVELILEPGRAIVANAGVLVTEVLDVKENGE-------RNFVIVDGGMNDLM 313 (394)
T ss_pred CCCCCCcCHHHHHHHHHHHHhhc---cCCCeEEEccchhhhhcceeEEEEEEEEEEecC-------ceEEEEechhccCc
Confidence 3 45888888888888765 256999999999999999999999999999875 68999999999999
Q ss_pred hhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc----------cCcEEEEeccccC
Q psy9378 469 NCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS----------LFFCVLWLCGQVY 522 (522)
Q Consensus 469 ~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~----------~~~~~~~~~~~~~ 522 (522)
+++||+.+|++.. ....+......++|+||+|+++|+++ .||.++|...|||
T Consensus 314 rpaly~a~~~~~~--~~~~~~~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY 375 (394)
T COG0019 314 RPALYGAYHHIRL--NRTDEDAEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAY 375 (394)
T ss_pred CHHHcCCcccccc--ccccCCCCeEEEEEECCCcCCCCeeeeeeeCCCCCCCCCEEEEcccchh
Confidence 9999999876554 22223334788999999999999998 5899999999998
No 3
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=1.7e-58 Score=488.68 Aligned_cols=313 Identities=38% Similarity=0.676 Sum_probs=275.1
Q ss_pred CCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------
Q psy9378 208 MKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----------------------- 264 (522)
Q Consensus 208 ~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----------------------- 264 (522)
+.++||||||++.|++|+++|+++||+++++||||||+++.|+++|.+.|+||||+|
T Consensus 10 ~~~~p~yv~d~~~i~~~~~~l~~~lp~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~gEl~~al~~G~~~~~Iif~gp~ 89 (394)
T cd06831 10 TGKNAFFVGDLGKIVKKHSQWQTVMAQIKPFYTVRCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIYTNPC 89 (394)
T ss_pred cCCCCeEEEEHHHHHHHHHHHHHHCCCCeEEeeeccCCCHHHHHHHHHcCCCeEeCCHHHHHHHHhcCCCcCCEEEeCCC
Confidence 448999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEE
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVG 344 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~G 344 (522)
|+.++|+.|+++|+..+++||++||++|.+.+|+++|+|||+++..++...+.+|||++++ ++.++++.+++.++++.|
T Consensus 90 K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~KFGi~~~-~~~~~l~~~~~~~l~~~G 168 (394)
T cd06831 90 KQASQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKLLLHIATEDNIGGEEMNMKFGTTLK-NCRHLLECAKELDVQIVG 168 (394)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHhCCCCcEEEEEeccCCCCCCccCCCCCCCHH-HHHHHHHHHHHCCCeEEE
Confidence 9999999999999987999999999999999999999999999876666667799999998 999999999999999999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 345 VSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 345 lhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
||||+|||+.+++.|.++++.++.+++.+++.|+++++|||||||++. ..+++++++.|+++++++++...+++|++||
T Consensus 169 ih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldiGGGf~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~li~EP 247 (394)
T cd06831 169 VKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGFTGS-EIQLEEVNHVIRPLLDVYFPEGSGIQIIAEP 247 (394)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEeCCCcCCC-CCCHHHHHHHHHHHHHHhcCcCCCCEEEEeC
Confidence 999999999999999999999999999888999999999999999863 4689999999999999998743468999999
Q ss_pred cceeeccceeEEEEEEEEEeeCCCC-----CC---CCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEe
Q psy9378 425 GRYYVASAFTLATLIHSKRDILGAN-----SS---VPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSP 496 (522)
Q Consensus 425 GR~lva~ag~Lvt~V~~~K~~~~~~-----~g---~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 496 (522)
|||+|++||+|+|+|+++|+..+.. ++ .....+|++|+|+|+++.+.++++..+.|...+.........+++
T Consensus 248 GR~lva~ag~lvt~V~~~K~~~~~~~~~~~d~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (394)
T cd06831 248 GSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSEKLNTTPEVHKKYKEDEPLFTSS 327 (394)
T ss_pred ChhhhhcceEEEEEEEEEEeeccccccccccccCCCCceeEEEEcCceechhhhhhcccCcccceeeccCCCCCCceeEE
Confidence 9999999999999999999764311 00 112368999999999999998876554454443322223456899
Q ss_pred eecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 497 LFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 497 l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
|+||+|++.|+++. ||+|+|.-.|||
T Consensus 328 v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~i~~~GAY 362 (394)
T cd06831 328 LWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAG 362 (394)
T ss_pred EEeCCCCHHHeecccCcCCCCCCCCEEEECCCCCc
Confidence 99999999998865 699999777777
No 4
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=2.5e-54 Score=459.46 Aligned_cols=304 Identities=19% Similarity=0.185 Sum_probs=259.2
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhCC----------CCeEEeeecCCCcHHHHHHHHHcC----CeEEEEc--------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKLP----------RVDPYYAVKCNDSQMVLEVLAALG----TGFDCAS-------- 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~lp----------~~~i~YAvKAN~~~~Vlk~L~~~G----~GfDvaS-------- 264 (522)
++++||+||||++.|++|+++++++|+ +++++||+|||+++.|+++|+++| +||||+|
T Consensus 1 ~~ygtPlyvyd~~~i~~~~~~l~~af~~~~~~~~~~~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al 80 (409)
T cd06830 1 RGYGLPLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAAL 80 (409)
T ss_pred CCCCCCEEEEcHHHHHHHHHHHHHHHHHHHHhcCcCCceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHH
Confidence 368999999999999999999999997 468999999999999999999999 9999999
Q ss_pred ---------------CCHHHHHHHHHc---CCC-EEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCc-----ccCCC
Q psy9378 265 ---------------KPISHIRYAAEY---GID-TMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEV-----AQCQL 316 (522)
Q Consensus 265 ---------------K~~~eL~~A~~~---Gv~-~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~-----~~~~~ 316 (522)
|+.++|++|++. |+. .+++||++||++|.+++ ++++|+||||++... +++..
T Consensus 81 ~~G~~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~ 160 (409)
T cd06830 81 ALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGKWQESGGD 160 (409)
T ss_pred hcCCCCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEEEccCCCCCcceeccCCC
Confidence 999999999876 443 58999999999999985 357899999997543 35667
Q ss_pred CCccccCcCCCHHHHHHHHhhC--CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC
Q psy9378 317 GMKFGCDPISEAPRLLRLAKSL--DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG 394 (522)
Q Consensus 317 ~sKFGi~~e~e~~~ll~~~k~~--~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~ 394 (522)
.+|||++++ ++.++++.+++. ++++.|||||+|||+.+.+.|.++++.+.++++.+++.|+++++|||||||+++|.
T Consensus 161 ~sKFGi~~~-~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~iDiGGGf~v~y~ 239 (409)
T cd06830 161 RSKFGLTAS-EILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIGGGLGVDYD 239 (409)
T ss_pred CCCCCCCHH-HHHHHHHHHHhcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEcCCCcccCCC
Confidence 899999998 999999999884 68999999999999999999999999999999888888999999999999998752
Q ss_pred -----------CCHHHHHHHHHHHHHhhCCC--CCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEc
Q psy9378 395 -----------YSMNRIAEIINVALDEYFPV--EEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYIN 461 (522)
Q Consensus 395 -----------~~~~~~a~~I~~~l~~~~~~--~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd 461 (522)
.++++|++.|.+.+++++.+ ...++|++|||||+|++||+|+|+|+++|+.. .++++|
T Consensus 240 ~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~K~~~---------~~~~~~ 310 (409)
T cd06830 240 GSRSSSDSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLA---------DWYFCN 310 (409)
T ss_pred CCcCcccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEecCHHhhhhceEEEEEeEEEEecC---------CEEEEe
Confidence 47999999999999987632 13579999999999999999999999999743 356777
Q ss_pred CCCcCcc-hhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc--------------------cCcEEEEeccc
Q psy9378 462 DGVYGSF-NCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS--------------------LFFCVLWLCGQ 520 (522)
Q Consensus 462 ~G~~~~~-~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~--------------------~~~~~~~~~~~ 520 (522)
+|+++++ ++.+|+..+++..+ +.. +.....+++|+||+|++.|+++ .||+|+|...|
T Consensus 311 dg~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~v~Gp~C~s~D~~~~~~~l~~~~~~~~lp~~~~~~GD~l~~~~~G 388 (409)
T cd06830 311 FSLFQSLPDSWAIDQLFPIMPL-HRL-NEKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVG 388 (409)
T ss_pred cccccCCcchHHhCCCceEEEC-CCC-CCCCceeEEEeccCcCCCCEEeeecccccccccccCCCCCCCCCCEEEEEecc
Confidence 7766654 56678776554333 222 2224568999999999999876 68999998888
Q ss_pred cC
Q psy9378 521 VY 522 (522)
Q Consensus 521 ~~ 522 (522)
||
T Consensus 389 AY 390 (409)
T cd06830 389 AY 390 (409)
T ss_pred Hh
Confidence 87
No 5
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=2.2e-53 Score=446.49 Aligned_cols=296 Identities=21% Similarity=0.217 Sum_probs=252.9
Q ss_pred CCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------
Q psy9378 208 MKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----------------------- 264 (522)
Q Consensus 208 ~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----------------------- 264 (522)
..+|||||||++.|++|+++|++.++..+++||+|||+++.|+++++++|+||||+|
T Consensus 9 ~~~tP~~v~d~~~l~~~~~~l~~~~~~~~~~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Iif~g 88 (368)
T cd06840 9 PDVGPCYVYDLETVRARARQVSALKAVDSLFYAIKANPHPDVLRTLEEAGLGFECVSIGELDLVLKLFPDLDPRRVLFTP 88 (368)
T ss_pred CCCCCEEEecHHHHHHHHHHHHhCCCCCeEEEEeccCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcccCCCcceEEEcC
Confidence 457999999999999999999864455689999999999999999999999999999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCc------ccCCCCCccccCcCCCHHHHHHHHh
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEV------AQCQLGMKFGCDPISEAPRLLRLAK 336 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~------~~~~~~sKFGi~~e~e~~~ll~~~k 336 (522)
|+.++|++|+++|+. +++||++||++|.++++.++|+||||++... .++...+|||++++ ++.++++.++
T Consensus 89 p~K~~~~l~~a~~~gv~-i~~Ds~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~~~-~~~~~l~~~~ 166 (368)
T cd06840 89 NFAARSEYEQALELGVN-VTVDNLHPLREWPELFRGREVILRIDPGQGEGHHKHVRTGGPESKFGLDVD-ELDEARDLAK 166 (368)
T ss_pred CCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhcccCCEEEEECCCCCCCCCCceecCCCCCCCCCCHH-HHHHHHHHHH
Confidence 999999999999995 8999999999999999999999999997542 13445799999998 9999999998
Q ss_pred hCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-----CCCHHHHHHHHHHHHHhh
Q psy9378 337 SLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-----GYSMNRIAEIINVALDEY 411 (522)
Q Consensus 337 ~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-----~~~~~~~a~~I~~~l~~~ 411 (522)
+.++++.|+|||+|||+.+++.|.++++.+.++.+ .+.++++|||||||+++| ..+++.+++.|++..+.
T Consensus 167 ~~~l~l~GlhfH~GS~~~~~~~~~~~~~~~~~l~~----~~~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~i~~~~~~- 241 (368)
T cd06840 167 KAGIIVIGLHAHSGSGVEDTDHWARHGDYLASLAR----HFPAVRILNVGGGLGIPEAPGGRPIDLDALDAALAAAKAA- 241 (368)
T ss_pred hCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHH----hcCCCCEEEecCcccCCCCCCCCCCCHHHHHHHHHHHHhh-
Confidence 88999999999999999999999887765544432 234799999999999875 25799999888875543
Q ss_pred CCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCc
Q psy9378 412 FPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQV 491 (522)
Q Consensus 412 ~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~ 491 (522)
+ ++++|++|||||+|++||+|+|+|+++|+..+ .+|+++|+|+++.+++.+|+..+.++.+... +...
T Consensus 242 ~---~~~~l~~EPGR~lva~ag~lvt~V~~vK~~~~-------~~~~~~d~G~~~l~~p~~~~~~~~~~~~~~~--~~~~ 309 (368)
T cd06840 242 H---PQYQLWMEPGRFIVAESGVLLARVTQIKHKDG-------VRFVGLETGMNSLIRPALYGAYHEIVNLSRL--DEPP 309 (368)
T ss_pred C---CCcEEEEecCceeeecceEEEEEEEEEEecCC-------cEEEEEeCchhcccchhhhcccceeEecCCC--CcCC
Confidence 2 36899999999999999999999999998766 6899999999999999999887766544322 2223
Q ss_pred ceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 492 SLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 492 ~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
..+++|+||+|++.|+++ .||+|+|.--|+|
T Consensus 310 ~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY 349 (368)
T cd06840 310 AGNADVVGPICESGDVLGRDRLLPETEEGDVILIANAGAY 349 (368)
T ss_pred cceEEEEeCCcCCCCEEeecccCCCCCCCCEEEEecCCcc
Confidence 467999999999999775 4799999766776
No 6
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=100.00 E-value=2.6e-53 Score=452.51 Aligned_cols=317 Identities=24% Similarity=0.273 Sum_probs=276.0
Q ss_pred CCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCC--CeEEeeecCCCcHHHHHHHHHcCCeEEEEc------
Q psy9378 193 DMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPR--VDPYYAVKCNDSQMVLEVLAALGTGFDCAS------ 264 (522)
Q Consensus 193 ~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~--~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS------ 264 (522)
.+++.++.+|+ ++++|||||||++.|++|+++|++++++ ++++||+|||+++.|++.+.+.|+||||+|
T Consensus 10 ~~~~~~~~~l~---~~~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~dvaS~~E~~~ 86 (417)
T TIGR01048 10 FIEGVDLLELA---EEFGTPLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNLALLRLLAELGSGFDVVSGGELYR 86 (417)
T ss_pred EECCeeHHHHH---HhhCCCEEEEeHHHHHHHHHHHHHhhCCCCceEEEEehhCCCHHHHHHHHHcCCcEEEeCHHHHHH
Confidence 35777787887 7789999999999999999999999985 899999999999999999999999999999
Q ss_pred -----------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCC----CeEEEEEeeCCCc------ccCCCC
Q psy9378 265 -----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPT----AQLVIRIRCDAEV------AQCQLG 317 (522)
Q Consensus 265 -----------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~----~~V~LRIn~~~~~------~~~~~~ 317 (522)
|+.++|+.|+++|+..+++||++||++|.+++++ .+|+||||++... .++...
T Consensus 87 ~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gi~~i~iDs~~el~~l~~~a~~~~~~~~v~lRIn~~~~~~~~~~~~~g~~~ 166 (417)
T TIGR01048 87 ALAAGFPPEKIVFNGNGKSRAELERALELGIRCINVDSESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYISTGLED 166 (417)
T ss_pred HHHcCCCcceEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCCeecCCCC
Confidence 8999999999999976999999999999988643 5899999987532 133456
Q ss_pred CccccCcCCCHHHHHHHHhhC-CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC---
Q psy9378 318 MKFGCDPISEAPRLLRLAKSL-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--- 393 (522)
Q Consensus 318 sKFGi~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--- 393 (522)
+|||++++ ++.++++.+++. ++++.|||||+||++.+.+.+.++++.+.++++.+++.|.++++||+||||+.+|
T Consensus 167 srfGi~~~-~~~~~~~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~l~~idiGGG~~~~y~~~ 245 (417)
T TIGR01048 167 SKFGIDVE-EALEAYLYALQLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAEGIDLEFLDLGGGLGIPYTPE 245 (417)
T ss_pred CCCCCCHH-HHHHHHHHHHhCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCccEEEeCCccccccCCC
Confidence 99999998 899999888764 7999999999999999999999999999999988888899999999999998875
Q ss_pred --CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhh
Q psy9378 394 --GYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCI 471 (522)
Q Consensus 394 --~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~ 471 (522)
..++++|++.|.+.++++++...+++|++|||||++++||+++++|+++|+.++ +.|+++|+|+++.+++.
T Consensus 246 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~EPGR~lva~~g~lv~~V~~~k~~~~-------~~~~~~d~g~~~~~~~~ 318 (417)
T TIGR01048 246 EEPPDPEEYAQAILAALEGYADLGLDPKLILEPGRSIVANAGVLLTRVGFVKEVGS-------RNFVIVDAGMNDLIRPA 318 (417)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEccCceeeccceEEEEEEEEEEecCC-------CEEEEEeCCcccchhhh
Confidence 268999999999999997642247899999999999999999999999998776 68999999999999999
Q ss_pred hcccCccccccCCCCCCCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 472 IYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 472 l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
+|++++++..+.+. ......+++|+||+|++.|+++. ||+|+|.--|||
T Consensus 319 ~~~~~~~~~~~~~~--~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY 376 (417)
T TIGR01048 319 LYGAYHHIIVANRT--NDAPTEVADVVGPLCESGDVLARDRELPEVEPGDLLAVFDAGAY 376 (417)
T ss_pred hccccceEEEccCC--CCCCceEEEEEeCCcCCCCEEeeccCCCCCCCCCEEEEeCCCcc
Confidence 99987766544221 22345789999999999998874 799999666666
No 7
>PLN02537 diaminopimelate decarboxylase
Probab=100.00 E-value=7.2e-53 Score=448.49 Aligned_cols=312 Identities=20% Similarity=0.213 Sum_probs=271.8
Q ss_pred CCCCccccCCccccCCC-CCeEEEEeHHHHHHHHHHHHHhCCC--CeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----
Q psy9378 193 DMTQVPVYNYPDNVGMK-EDAFYVLDVGEIVRKHEDWKLKLPR--VDPYYAVKCNDSQMVLEVLAALGTGFDCAS----- 264 (522)
Q Consensus 193 ~~~g~~l~~l~~~~~~~-~tP~yV~Dl~~I~~ni~~l~~~lp~--~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----- 264 (522)
.++++++.+|+ +++ +|||||||+++|++|+++|++++++ ++++||+|||+++.|++++.+.|+|++|+|
T Consensus 2 ~~~~~~~~~l~---~~~~~tP~~v~d~~~l~~N~~~~~~~~~~~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~ 78 (410)
T PLN02537 2 YCEGLRVQDIM---ESVEKRPFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELR 78 (410)
T ss_pred eECCccHHHHH---HhcCCCCeEEEeHHHHHHHHHHHHHHhccCCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHH
Confidence 46788888888 556 7999999999999999999999984 569999999999999999999999999999
Q ss_pred ------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCc------ccCCC
Q psy9378 265 ------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEV------AQCQL 316 (522)
Q Consensus 265 ------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~------~~~~~ 316 (522)
|++++|+.|+++|+. +++||++||++|.++++ .++|+||||++... .++..
T Consensus 79 ~al~~G~~~~~ii~~g~~k~~~~l~~a~~~gv~-i~ids~~el~~l~~~a~~~~~~~~v~lRvnp~~~~~~~~~i~tG~~ 157 (410)
T PLN02537 79 LALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNK 157 (410)
T ss_pred HHHHcCCCcceEEEECCCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCccccCCC
Confidence 899999999999995 99999999999998753 46999999987532 23445
Q ss_pred CCccccCcCCCHHHHHHHHhhC--CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC
Q psy9378 317 GMKFGCDPISEAPRLLRLAKSL--DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG 394 (522)
Q Consensus 317 ~sKFGi~~e~e~~~ll~~~k~~--~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~ 394 (522)
.+|||++++ ++.++++.+++. ++++.|+|||+||++.+.+.|.++++.+.++++.+++.|+++++|||||||+++|.
T Consensus 158 ~sRfGi~~~-~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~y~ 236 (410)
T PLN02537 158 NSKFGIRNE-KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFELSYLNIGGGLGIDYY 236 (410)
T ss_pred CCCCCCCHH-HHHHHHHHHHhCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCccEEEcCCCccccCC
Confidence 699999997 899999988775 89999999999999999999999999999999988888999999999999998762
Q ss_pred ------CCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcc
Q psy9378 395 ------YSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSF 468 (522)
Q Consensus 395 ------~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~ 468 (522)
++++++++.|++.++++ +++|++|||||+|++||+|+|+|+++|+..+ +.|+++|+|+++..
T Consensus 237 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~li~EPGR~lva~ag~lv~~V~~~k~~~~-------~~~~~~dgg~~~~~ 304 (410)
T PLN02537 237 HAGAVLPTPRDLIDTVRELVLSR-----DLTLIIEPGRSLIANTCCFVNRVTGVKTNGT-------KNFIVIDGSMAELI 304 (410)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc-----CCEEEEccChhhhccceEEEEEEEEEeecCC-------cEEEEEeCcccccc
Confidence 47999999999998753 5799999999999999999999999998755 68999999999999
Q ss_pred hhhhcccCccccccCCCCCCCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 469 NCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 469 ~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
++.+|+.++++++.... ...+...+++|+||+|+++|+++. ||+|++.--|||
T Consensus 305 ~p~~~~~~~~~~~~~~~-~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~~~~~GAY 366 (410)
T PLN02537 305 RPSLYDAYQHIELVSPP-PPDAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLVVHDAGAY 366 (410)
T ss_pred chHhhccccceeEccCC-CCCCCceEEEEecCccCCCCEEEEcccCCCCCCCCEEEEeCCCcc
Confidence 99999887665443222 222345678999999999998864 799999777777
No 8
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=3.2e-52 Score=437.36 Aligned_cols=304 Identities=24% Similarity=0.244 Sum_probs=268.9
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc----------------------
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS---------------------- 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS---------------------- 264 (522)
++||+||+|++.|++|+++|+++++ +++++||+|||+++.|++++.+.|.||||+|
T Consensus 1 ~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~~~yavKaN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~I~~~~p 80 (373)
T cd06828 1 YGTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGN 80 (373)
T ss_pred CCCCEEEEcHHHHHHHHHHHHHhhCCCCcEEEEEehhCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCcccEEEeCC
Confidence 5799999999999999999999998 7999999999999999999999999999999
Q ss_pred -CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCc------ccCCCCCccccCcCCCHHHHHH
Q psy9378 265 -KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEV------AQCQLGMKFGCDPISEAPRLLR 333 (522)
Q Consensus 265 -K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~------~~~~~~sKFGi~~e~e~~~ll~ 333 (522)
|+.++|+.|+++|+..+++||++||++|.++++ +.+|+|||+++... .++...+|||++++ ++.++++
T Consensus 81 ~k~~~~l~~a~~~g~~~~~ids~~el~~l~~~a~~~~~~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~~~-e~~~~~~ 159 (373)
T cd06828 81 GKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLE-QALEAYR 159 (373)
T ss_pred CCCHHHHHHHHHcCCeEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCCCeecCCCCCCCCCCHH-HHHHHHH
Confidence 899999999999965799999999999999875 58999999986532 13445699999998 9999999
Q ss_pred HHhh-CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-----CCCHHHHHHHHHHH
Q psy9378 334 LAKS-LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-----GYSMNRIAEIINVA 407 (522)
Q Consensus 334 ~~k~-~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-----~~~~~~~a~~I~~~ 407 (522)
.+++ .++++.|+|||+||++.+.+.+.++++++.++++.+++.|+++++||+||||+..+ ..++++|++.|.+.
T Consensus 160 ~~~~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~i~~~ 239 (373)
T cd06828 160 RAKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEA 239 (373)
T ss_pred HHHhCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCCCcccCCCCCCCCHHHHHHHHHHH
Confidence 9987 79999999999999999999999999999999988888899999999999998865 35899999999999
Q ss_pred HHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCC
Q psy9378 408 LDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMD 487 (522)
Q Consensus 408 l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~ 487 (522)
++++++...+++|++|||||++++||+++|+|+++|+.++ +.|+++|+|+++.+.+.+|+..++...+.+..
T Consensus 240 ~~~~~~~~~~~~l~~EpGR~lv~~~g~lv~~V~~~k~~~~-------~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~- 311 (373)
T cd06828 240 LKELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGG-------KTFVGVDAGMNDLIRPALYGAYHEIVPVNKPG- 311 (373)
T ss_pred HHHHHccCCCceEEEecCcceeecceEEEEEEEEEEecCC-------CEEEEEeCCcccchhhHhcCCccceEEccCCC-
Confidence 9999863357999999999999999999999999998765 58999999999999999998776655443221
Q ss_pred CCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 488 DSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 488 ~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
.....+++|+||||++.|+++. ||+|+|..-|+|
T Consensus 312 -~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY 354 (373)
T cd06828 312 -EGETEKVDVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAY 354 (373)
T ss_pred -CCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcc
Confidence 1356889999999999997755 699999777777
No 9
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=1.6e-52 Score=436.48 Aligned_cols=285 Identities=16% Similarity=0.155 Sum_probs=239.6
Q ss_pred CeEEEEeHHHHHHHHHHHHHhC--CCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc---------------------CCH
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKL--PRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS---------------------KPI 267 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~l--p~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS---------------------K~~ 267 (522)
|||||||++.|++|+++|++++ |+++++||+|||+++.|+++|+++|+|||||| |+.
T Consensus 1 tP~yv~d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~a~~~~~~~~i~~~~~k~~ 80 (346)
T cd06829 1 TPCYVLDEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTASSLFEARLGREEFGGEVHTYSPAYRD 80 (346)
T ss_pred CCeEEeeHHHHHHHHHHHHHHHhccCCEEEEEEhhcCCHHHHHHHHHhCCccEecCHHHHHHHHHHCCCceEEECCCCCH
Confidence 8999999999999999999876 68999999999999999999999999999999 889
Q ss_pred HHHHHHHHcCCCEEEEcCHHHHHHHhhhCC--CCeEEEEEeeCCCc------ccCCCCCccccCcCCCHHHHHHHHhhCC
Q psy9378 268 SHIRYAAEYGIDTMTFDNEIELQKVKQFHP--TAQLVIRIRCDAEV------AQCQLGMKFGCDPISEAPRLLRLAKSLD 339 (522)
Q Consensus 268 ~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~--~~~V~LRIn~~~~~------~~~~~~sKFGi~~e~e~~~ll~~~k~~~ 339 (522)
++|++|++.|+ .+++||++||++|.++++ .++|+||||++... .++...+|||++++ ++.+ ..+
T Consensus 81 ~el~~a~~~~~-~~~~Ds~~EL~~l~~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~~~-~~~~------~~~ 152 (346)
T cd06829 81 DEIDEILRLAD-HIIFNSLSQLERFKDRAKAAGISVGLRINPEYSEVETDLYDPCAPGSRLGVTLD-ELEE------EDL 152 (346)
T ss_pred HHHHHHHHcCC-EEEECCHHHHHHHHHHHhccCCeEEEEECCCCCCCCCceecCCCCCCCCCCChH-Hhhh------hhh
Confidence 99999999988 699999999999999987 78999999997543 23456899999987 6543 235
Q ss_pred CeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-CCCHHHHHHHHHHHHHhhCCCCCCc
Q psy9378 340 LDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-GYSMNRIAEIINVALDEYFPVEEGV 418 (522)
Q Consensus 340 L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-~~~~~~~a~~I~~~l~~~~~~~~~~ 418 (522)
+++.|||||+|||+ +.+.|.++++.+.+++.. .+.++++|||||||++.+ ..+++++++.+++.++++ ++
T Consensus 153 ~~v~Glh~HvGS~~-~~~~~~~~~~~~~~~~~~---~~~~~~~lDiGGGf~v~~~~~~~~~~~~~i~~~~~~~-----~~ 223 (346)
T cd06829 153 DGIEGLHFHTLCEQ-DFDALERTLEAVEERFGE---YLPQLKWLNLGGGHHITRPDYDVDRLIALIKRFKEKY-----GV 223 (346)
T ss_pred cCceEEEEccCccc-CHHHHHHHHHHHHHHHHH---HHhcCcEEEcCCCcCCCcCCCCHHHHHHHHHHHHHHh-----CC
Confidence 78899999999999 999999998887766532 234799999999999876 468999999999988765 48
Q ss_pred EEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeee
Q psy9378 419 SIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLF 498 (522)
Q Consensus 419 ~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~ 498 (522)
+|++|||||+|++||+|+|+|+++|+. + +.|+++|+|+++.+.+.+.. ++.|.+.....+.....+++|+
T Consensus 224 ~li~EPGR~lva~ag~lvt~V~~~K~~-~-------~~~~~~d~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~ 293 (346)
T cd06829 224 EVYLEPGEAVALNTGYLVATVLDIVEN-G-------MPIAILDASATAHMPDVLEM--PYRPPIRGAGEPGEGAHTYRLG 293 (346)
T ss_pred EEEEeCchhhhhcceEEEEEEEEEEEc-C-------ceEEEEeCChhhcCchhhcc--CCCccccCCCCCCCCceEEEEE
Confidence 999999999999999999999999976 4 57999999999877554322 2344443332223345789999
Q ss_pred cCCCCCccccc---------cCcEEEEeccccC
Q psy9378 499 LQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 499 Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
||+|++.|+++ .||+|+|.-.|||
T Consensus 294 Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY 326 (346)
T cd06829 294 GNSCLAGDVIGDYSFDEPLQVGDRLVFEDMAHY 326 (346)
T ss_pred cCCCCcccEEeecccCCCCCCCCEEEEeCchhh
Confidence 99999999765 3799999777777
No 10
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=9.4e-52 Score=435.71 Aligned_cols=301 Identities=19% Similarity=0.208 Sum_probs=251.4
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCCC-CeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------CC
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLPR-VDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KP 266 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp~-~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K~ 266 (522)
.||||||++.|++|+++|+++||+ ++++||+|||+++.|+++|.+.|+|+||+| |+
T Consensus 3 ~~~~v~d~~~l~~~~~~l~~a~~~~~~~~yAvKaN~~~~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~K~ 82 (379)
T cd06836 3 PAVGLYDLDGFRALVARLTAAFPAPVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSPAKT 82 (379)
T ss_pred CEEEEEcHHHHHHHHHHHHHhcCCCcEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCChhhEEEeCCCCC
Confidence 589999999999999999999995 899999999999999999999999999999 99
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhC-----CCCeEEEEEeeCCCc------ccCCCCCccccCcCC-CHHHHHHH
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFH-----PTAQLVIRIRCDAEV------AQCQLGMKFGCDPIS-EAPRLLRL 334 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~-----~~~~V~LRIn~~~~~------~~~~~~sKFGi~~e~-e~~~ll~~ 334 (522)
.++|++|+++|+ .+++||++||++|.+++ ++.+|+|||||+... .++...||||+++++ ++.++++.
T Consensus 83 ~~~L~~ai~~gv-~i~iDS~~El~~i~~~a~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~~~~~~~~~~~~~ 161 (379)
T cd06836 83 RAELREALELGV-AINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEIIDA 161 (379)
T ss_pred HHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCccccccCCCCCCCCcCcchhHHHHHHHH
Confidence 999999999999 59999999999999875 347899999986431 244567999999872 34555554
Q ss_pred HhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhh-cC-CCccEEEEcCCCCCCC-----CCCHHHHHHHHHHH
Q psy9378 335 AKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNS-LG-FSMRVLDLGGGYPGYT-----GYSMNRIAEIINVA 407 (522)
Q Consensus 335 ~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~-~G-~~l~~LdIGGGf~~~~-----~~~~~~~a~~I~~~ 407 (522)
+. .+.++.|||||+|||+.+++.|.++++.+.++++.+++ .| .++++|||||||+++| +.++++|++.|++.
T Consensus 162 ~~-~~~~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~IDiGGGf~v~y~~~~~~~~~~~~~~~i~~~ 240 (379)
T cd06836 162 FA-RRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAALKAA 240 (379)
T ss_pred Hh-cCCCeEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCccccCCCCCCCCCCHHHHHHHHHHH
Confidence 32 24467899999999999999999999998888876654 56 5899999999998865 35799999999999
Q ss_pred HHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccC-CC-
Q psy9378 408 LDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPF-NV- 485 (522)
Q Consensus 408 l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~-~~- 485 (522)
++++++ .+++|++|||||+|++||+|+|+|+++|+..+ +.++++|+|+++..++.++...++.++.. ..
T Consensus 241 l~~~~~--~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~-------~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~ 311 (379)
T cd06836 241 VPELFD--GRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGG-------RRIAITHAGAQVATRTAYAPDDWPLRVTVFDAN 311 (379)
T ss_pred HHHHhc--cCcEEEEecChheeccceEEEEEEEEEEecCC-------eEEEEEcCCccccchhhhccccCceEEeccccc
Confidence 999876 46899999999999999999999999998766 68999999999988888776544433322 21
Q ss_pred -CCCCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 486 -MDDSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 486 -~~~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
...++...+++|+||+|++.|+++. ||.|+|.--|+|
T Consensus 312 ~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY 358 (379)
T cd06836 312 GEPKTGPEVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAY 358 (379)
T ss_pred ccccCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcc
Confidence 1112345689999999999997754 799999666666
No 11
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=1e-51 Score=440.73 Aligned_cols=309 Identities=16% Similarity=0.180 Sum_probs=259.0
Q ss_pred CCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc--------
Q psy9378 193 DMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-------- 264 (522)
Q Consensus 193 ~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-------- 264 (522)
++.+..+.+|+ ++++||+||||++.|++|++++++ ++ +++||+|||+++.|++++.+.|+||||+|
T Consensus 11 ~~~~~~~~~l~---~~~~tP~~v~d~~~l~~n~~~l~~-~~--~i~yavKan~~~~il~~~~~~G~g~dvaS~~E~~~a~ 84 (420)
T PRK11165 11 DLTAENLLRLP---AEYGTPLWVYDADIIRRRIAQLRQ-FD--VIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERAL 84 (420)
T ss_pred ccCCcCHHHHH---HHhCCCEEEEcHHHHHHHHHHHhc-cC--cceEEehhCCCHHHHHHHHHcCCCEEEeCHHHHHHHH
Confidence 45666677776 678999999999999999999986 76 68999999999999999999999999999
Q ss_pred -------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCc------ccCCCCCc
Q psy9378 265 -------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEV------AQCQLGMK 319 (522)
Q Consensus 265 -------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~------~~~~~~sK 319 (522)
|+.++|+.|++.|+ .+++||++||++|.+++++++|+||||++.+. .+....||
T Consensus 85 ~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~gv-~i~vDs~~el~~i~~~~~~~~v~lRvn~~~~~~~~~~~~~~~~~sK 163 (420)
T PRK11165 85 AAGYKPGTEPDEIVFTADVIDRATLARVVELKI-PVNAGSIDMLDQLGQVSPGHRVWLRINPGFGHGHSQKTNTGGENSK 163 (420)
T ss_pred HcCCCCCCCCCeEEEeCCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHhcCCCcEEEEECCCCCCCCCCceecCCCCCC
Confidence 78899999999999 59999999999999999989999999987532 24456799
Q ss_pred cccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC-----
Q psy9378 320 FGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG----- 394 (522)
Q Consensus 320 FGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~----- 394 (522)
||++.+ ++.++++.+++.++++.|||||+||++ +.+.+.+.++ .+.+.+++.|.++++|||||||++.|.
T Consensus 164 FGi~~~-~~~~~~~~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~---~l~~~~~~~g~~~~~IdiGGGf~~~y~~~~~~ 238 (420)
T PRK11165 164 HGIWHE-DLPAALAVIQRYGLKLVGIHMHIGSGV-DYGHLEQVCG---AMVRQVIELGQDIEAISAGGGLSIPYREGEEP 238 (420)
T ss_pred CCCCHH-HHHHHHHHHHhCCCcEEEEEEeccCCC-ChHHHHHHHH---HHHHHHHHhCCCCcEEEeCCCcccCCCCCCCC
Confidence 999887 888888888888999999999999987 7666665544 445567778999999999999988752
Q ss_pred CCHHHHHHHHH---HHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhh
Q psy9378 395 YSMNRIAEIIN---VALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCI 471 (522)
Q Consensus 395 ~~~~~~a~~I~---~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~ 471 (522)
.++++|++.+. +.+.+.++ .+++|++|||||+|++||+++|+|+++|...+ +.|+++|+|+++..++.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~--~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~-------~~~~i~D~G~n~l~~p~ 309 (420)
T PRK11165 239 VDTEHYFGLWDAARKRIARHLG--HPVKLEIEPGRFLVAESGVLVAQVRAVKQMGS-------RHFVLVDAGFNDLMRPA 309 (420)
T ss_pred CCHHHHHHHHHHHHHHHHhhcC--CCceEEEccCcceeecceEEEEEEEEEEecCC-------cEEEEEeCCcccCchhh
Confidence 46888886554 44444444 46899999999999999999999999998765 58999999999999999
Q ss_pred hcccCccccccCCCCC--CCCcceEEeeecCCCCCccccc----------------cCcEEEEeccccC
Q psy9378 472 IYDHAVCTPIPFNVMD--DSQVSLRSPLFLQESFLLSCLS----------------LFFCVLWLCGQVY 522 (522)
Q Consensus 472 l~~~~~~~p~~~~~~~--~~~~~~~~~l~Gp~C~~~D~l~----------------~~~~~~~~~~~~~ 522 (522)
+|+.+|++.++..... +.....+++|+||+|+++|+++ .||+|++.-.|||
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~~~~~~~~lP~l~~GD~l~i~~~GAY 378 (420)
T PRK11165 310 MYGSYHHISVLAADGRSLEEAPTVDTVVAGPLCESGDVFTQQEGGVVETRALPQVQVGDYLVFHDTGAY 378 (420)
T ss_pred hcccccceEEecCCCcccccCCceEEEEEeCCCCCCCEEeeccCcccceeECCCCCCCCEEEEecCCCC
Confidence 9998877655532221 1223578999999999999985 2799999766776
No 12
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=3.5e-51 Score=428.42 Aligned_cols=307 Identities=51% Similarity=0.802 Sum_probs=270.9
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------CC
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KP 266 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K~ 266 (522)
+||+|+||+++|++|+++|++++|+.+++||+|||+++.|++.+.+.|+||+|+| |+
T Consensus 1 ~tP~~vid~~~l~~N~~~~~~~~~~~~~~~avKAN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~i~~~~~~k~ 80 (362)
T cd00622 1 ETPFLVVDLGDVVRKYRRWKKALPRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIELVLGLGVSPERIIFANPCKS 80 (362)
T ss_pred CCCEEEEeHHHHHHHHHHHHHHCCCCeEEEEeccCCCHHHHHHHHHcCCCeEecCHHHHHHHHHcCCCcceEEEcCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEE
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVS 346 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Glh 346 (522)
+++++.|+++|+..+++||++||+++.+.+++.++.|||+++.+++....+||||++++ ++.++++.+++.++++.|+|
T Consensus 81 ~~~l~~a~~~gi~~~~~ds~~el~~l~~~~~~~~v~vri~~~~~~~~~~~~sRfGi~~~-~~~~~~~~~~~~~~~~~Glh 159 (362)
T cd00622 81 ISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIATDDSGALCPLSRKFGADPE-EARELLRRAKELGLNVVGVS 159 (362)
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHHHHHCCCCEEEEEEeeCCCCCCCcccCCCCCCHH-HHHHHHHHHHHcCCEEEEEE
Confidence 99999999999976788999999999999888899999999876655556799999998 89999998877899999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC---CCCHHHHHHHHHHHHHhhCCCCCCcEEEec
Q psy9378 347 FHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT---GYSMNRIAEIINVALDEYFPVEEGVSIIAE 423 (522)
Q Consensus 347 fH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~---~~~~~~~a~~I~~~l~~~~~~~~~~~li~E 423 (522)
+|+||++.+.+.+.++++++.++++.+++.|..+++||+||||++.+ ..+++++++.|++.+++++. ...+++++|
T Consensus 160 ~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~E 238 (362)
T cd00622 160 FHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFP-DEGVRIIAE 238 (362)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcCEEEeCCCcCcccCCCCCCHHHHHHHHHHHHHHhCC-cCCCeEEEe
Confidence 99999999999999999999999988888889999999999999886 46899999999999999875 336899999
Q ss_pred CcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCC
Q psy9378 424 PGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESF 503 (522)
Q Consensus 424 PGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~ 503 (522)
||||++++||+|+|+|+++|+..+. ..++|+++|+|+++++++.+|+.+++...+.+...+++...+++|+||+|+
T Consensus 239 pGr~lv~~ag~l~t~V~~vk~~~~~----~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~ 314 (362)
T cd00622 239 PGRYLVASAFTLAVNVIAKRKRGDD----DRERWYYLNDGVYGSFNEILFDHIRYPPRVLKDGGRDGELYPSSLWGPTCD 314 (362)
T ss_pred CCchhccceEEEEEEEEEEEecCCC----CceEEEEEcCCeecchhhhhhccCCceeEEecCCCCCCCeeeEEEEcCCCC
Confidence 9999999999999999999986541 125799999999999999998877654444433322345678999999999
Q ss_pred Cccccc----------cCcEEEEeccccC
Q psy9378 504 LLSCLS----------LFFCVLWLCGQVY 522 (522)
Q Consensus 504 ~~D~l~----------~~~~~~~~~~~~~ 522 (522)
++|+++ .||.|+|.--|+|
T Consensus 315 ~~D~l~~~~~lp~~l~~GD~l~~~~~GAY 343 (362)
T cd00622 315 SLDVIYEDVLLPEDLAVGDWLLFENMGAY 343 (362)
T ss_pred cccEecccCcCcccCCCCCEEEEcCCCCc
Confidence 999666 4799999777776
No 13
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=1.7e-51 Score=433.72 Aligned_cols=299 Identities=22% Similarity=0.252 Sum_probs=255.2
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhC----CCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc------------------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKL----PRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------------------ 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~l----p~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS------------------ 264 (522)
++++||||+||++.|++|++++++++ ++++++||+|||+++.|++.|.+.|+|+||+|
T Consensus 3 ~~~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~~~dvaS~~E~~~~~~~G~~~~~Ii 82 (379)
T cd06841 3 ESYGSPFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKRII 82 (379)
T ss_pred hhcCCCeEEEeHHHHHHHHHHHHHHHhhcCCCeEEEEEehhcccHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCChHHEE
Confidence 67899999999999999999999988 57899999999999999999999999999999
Q ss_pred -----CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHH
Q psy9378 265 -----KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLA 335 (522)
Q Consensus 265 -----K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~ 335 (522)
|++++|+.|+++|+ .+++||++||++|.++++ +++|+|||+++.+.. ..+|||++++ |+.++++.+
T Consensus 83 ~~g~~k~~~~l~~a~~~g~-~i~ids~~el~~l~~~~~~~~~~~~v~lRv~~~~g~~---~~~rfGi~~~-e~~~~~~~~ 157 (379)
T cd06841 83 FNGPYKSKEELEKALEEGA-LINIDSFDELERILEIAKELGRVAKVGIRLNMNYGNN---VWSRFGFDIE-ENGEALAAL 157 (379)
T ss_pred EECCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHhcCCcceEEEEECCCCCCC---CCCCCCCchh-hhHHHHHHH
Confidence 88999999999998 599999999999988763 379999999975421 4699999997 887777766
Q ss_pred hh----CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC-----------CCHHHH
Q psy9378 336 KS----LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG-----------YSMNRI 400 (522)
Q Consensus 336 k~----~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~-----------~~~~~~ 400 (522)
++ .++++.|+|||+||++.+++.|.++++++.++++.+ .|.++++|||||||+++|. +++++|
T Consensus 158 ~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~idiGGG~~~~y~~~~~~~~~~~~~~~~~~ 235 (379)
T cd06841 158 KKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL--FGLELEYLDLGGGFPAKTPLSLAYPQEDTVPDPEDY 235 (379)
T ss_pred HHhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh--cCCCCCEEEeCCCcCcCcCccccccccCCCCCHHHH
Confidence 54 389999999999999999999999999888777655 5899999999999998762 479999
Q ss_pred HHHHHHHHHhhCC-CCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccc
Q psy9378 401 AEIINVALDEYFP-VEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCT 479 (522)
Q Consensus 401 a~~I~~~l~~~~~-~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~ 479 (522)
++.|.+.++++++ ..++++|++|||||++++||+++|+|+++|...+ +.|+++|+|+++..++ |+..+++
T Consensus 236 ~~~i~~~l~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~k~~~~-------~~~~~~d~g~~~~~~~--~~~~~~~ 306 (379)
T cd06841 236 AEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYG-------RNIAVTDAGINNIPTI--FWYHHPI 306 (379)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEecCcceeccceEEEEEEEEEEEcCC-------cEEEEEeCCcccCcCc--ccCCceE
Confidence 9999999999974 2357899999999999999999999999998765 6899999999887665 5544443
Q ss_pred cccCCCCCCCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 480 PIPFNVMDDSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 480 p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
..+ ....+.....+++|+||+|+++|+++. ||+|+|...|||
T Consensus 307 ~~~-~~~~~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY 357 (379)
T cd06841 307 LVL-RPGKEDPTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAY 357 (379)
T ss_pred EEe-ccCCCCCCcceEEEECCCcCCCCEEeeCCcCCCCCCCCEEEEeCCCCC
Confidence 333 222222345789999999999997764 799999777777
No 14
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=1.8e-51 Score=435.93 Aligned_cols=317 Identities=21% Similarity=0.270 Sum_probs=265.7
Q ss_pred CCCCCccccCCccccCCCC-CeEEEEeHHHHHHHHHHHHHhCCC-CeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----
Q psy9378 192 DDMTQVPVYNYPDNVGMKE-DAFYVLDVGEIVRKHEDWKLKLPR-VDPYYAVKCNDSQMVLEVLAALGTGFDCAS----- 264 (522)
Q Consensus 192 ~~~~g~~l~~l~~~~~~~~-tP~yV~Dl~~I~~ni~~l~~~lp~-~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----- 264 (522)
+.+++.++.+|+ ++++ |||||||++.|++|+++|++++|. ++++||+|||+++.|++++.+.|.||||+|
T Consensus 8 ~~~~~~~~~~l~---~~~g~tP~~v~d~~~l~~n~~~l~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~ 84 (398)
T TIGR03099 8 LCVGGIPLTELA---ARAGGTPFYAYDRGLVSERVAALRKALPEELAIHYAVKANPMPALLAHMAPLVDGFDVASAGELA 84 (398)
T ss_pred EEECCccHHHHH---HHhCCCCEEEEeHHHHHHHHHHHHHhccccCcEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHH
Confidence 346777788887 6788 999999999999999999999984 899999999999999999999999999999
Q ss_pred ------------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCc-----ccCCCC
Q psy9378 265 ------------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEV-----AQCQLG 317 (522)
Q Consensus 265 ------------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~-----~~~~~~ 317 (522)
|+.++|++|+++|+ .+++||++||++|.++++ ..+|+||||++... .++...
T Consensus 85 ~~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~~~~ 163 (398)
T TIGR03099 85 VALDTGYDPGCISFAGPGKTDAELRRALAAGV-LINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGGGA 163 (398)
T ss_pred HHHHcCCChhHEEEeCCCCCHHHHHHHHhCCC-EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccCCCC
Confidence 89999999999999 699999999999998753 47899999986421 223345
Q ss_pred CccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHH-HHHHhhcCCCccEEEEcCCCCCCC---
Q psy9378 318 MKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQI-FDLGNSLGFSMRVLDLGGGYPGYT--- 393 (522)
Q Consensus 318 sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l-~~~~~~~G~~l~~LdIGGGf~~~~--- 393 (522)
+|||++++ ++.++++.+++.++++.|+|+|+||++.+++.|.+++++..+. .+..++.|.++++|||||||++.+
T Consensus 164 srFGi~~~-e~~~~~~~~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGG~~v~~~~~ 242 (398)
T TIGR03099 164 KQFGIDAE-QVPAALAFIKAADLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPAPVRVINIGGGFGIPYFPG 242 (398)
T ss_pred CcCCCCHH-HHHHHHHHHHhCCCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEeCCcccCCCCCC
Confidence 99999998 9999999998889999999999999998988888887777664 456677899999999999998764
Q ss_pred --CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhh
Q psy9378 394 --GYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCI 471 (522)
Q Consensus 394 --~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~ 471 (522)
..++++++..|.++++++++..++++|++|||||++++||+++|+|+++|...+ +.|+++|+|+++.+++.
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~-------~~~~~~d~g~~~~~~~~ 315 (398)
T TIGR03099 243 NPPLDLAPVGAALAALFARLRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISRG-------ETFLVTDGGLHHHLSAS 315 (398)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCEEEEecChheeccceEEEEEEEEEEecCC-------cEEEEEcCCcccccccc
Confidence 357999999999999887653357899999999999999999999999998765 68999999999988754
Q ss_pred -----hcccCccccccCCCCCCCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 472 -----IYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 472 -----l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
++... .|+.+....+.....+++|+||+|+++|+++. ||.|++..-|+|
T Consensus 316 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~~~~GD~l~~~~~GAY 378 (398)
T TIGR03099 316 GNFGQVIRRN--YPVVIGNRIGGAVREIASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAY 378 (398)
T ss_pred ccccchhccC--ceeEEccCCCCCCceEEEEEeCCCCCCCEEeecCcCCCCCCCCEEEEcCCCCc
Confidence 22222 23333222223346789999999999997654 799999777777
No 15
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=8e-51 Score=426.06 Aligned_cols=303 Identities=32% Similarity=0.434 Sum_probs=265.9
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------CC
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KP 266 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K~ 266 (522)
||+||||++.|++|+++|++.++ +++++||+|||+++.|++.+.+.|+||+|+| |+
T Consensus 1 TP~~vid~~~l~~n~~~l~~~~~~~~~i~~avKan~~~~i~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~iv~~gp~~~ 80 (368)
T cd06810 1 TPFYVYDLDIIRAHYAALKEALPSGVKLFYAVKANPNPHVLRTLAEAGTGFDVASKGELALALAAGVPPERIIFTGPAKS 80 (368)
T ss_pred CCEEEeeHHHHHHHHHHHHHhCCCCCeEEEEEccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCHHHEEEcCCCCC
Confidence 89999999999999999999998 8999999999999999999999999999999 78
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcc-----cCCCCCccccCcCCCHHHHHHHHhh
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVA-----QCQLGMKFGCDPISEAPRLLRLAKS 337 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~-----~~~~~sKFGi~~e~e~~~ll~~~k~ 337 (522)
+++++.|+++|+..+++||++||++|.+.+ ++.+|+||||++.... ++...+|||++++ ++.++++.+++
T Consensus 81 ~~~l~~~~~~~~~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~-e~~~~~~~~~~ 159 (368)
T cd06810 81 VSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLS-EARAALERAKE 159 (368)
T ss_pred HHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHH-HHHHHHHHHHh
Confidence 899999999995469999999999999876 5689999999976422 3445699999998 99999998888
Q ss_pred CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC---CCCHHHHHHHHHHHHHhhCCC
Q psy9378 338 LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT---GYSMNRIAEIINVALDEYFPV 414 (522)
Q Consensus 338 ~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~---~~~~~~~a~~I~~~l~~~~~~ 414 (522)
.++++.|+|+|+||++.+.+.+.++++++.++++.+++.|.++++||+||||++++ ..++++|++.|++.++++++.
T Consensus 160 ~~l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~~~~id~GGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~ 239 (368)
T cd06810 160 LDLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKKYFPN 239 (368)
T ss_pred CCCcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcccccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 77999999999999999999999999999999998888899999999999999886 368999999999999998753
Q ss_pred CCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhh-cccCccccccCCCCCCCCcce
Q psy9378 415 EEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCII-YDHAVCTPIPFNVMDDSQVSL 493 (522)
Q Consensus 415 ~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l-~~~~~~~p~~~~~~~~~~~~~ 493 (522)
...+++++|||||++++||+|+|+|+++|+..+ ++|+++|+|+|+++++.+ ++..++ +.++....+.....
T Consensus 240 ~~~~~l~~EpGr~l~~~ag~lv~~V~~~k~~~~-------~~~~~~d~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 311 (368)
T cd06810 240 DPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGG-------RFFAVVDGGMNHSFRPALAYDAYHP-ITPLKAPGPDEPLV 311 (368)
T ss_pred CCCcEEEEecChhhhhhceEEEEEEEEEEecCC-------cEEEEEeCccccccccccccCCcce-eEEeCCCcccCCce
Confidence 357899999999999999999999999998776 689999999999999998 544433 33333322223567
Q ss_pred EEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 494 RSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 494 ~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
+++|+||+|++.|++.. ||+|+|...|||
T Consensus 312 ~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY 349 (368)
T cd06810 312 PATLAGPLCDSGDVIGRDRLLPELEVGDLLVFEDMGAY 349 (368)
T ss_pred eEEEECCCCCCCcEEeecccCCCCCCCCEEEEcCCCCC
Confidence 89999999999997665 699999777777
No 16
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=100.00 E-value=2.1e-51 Score=432.99 Aligned_cols=288 Identities=13% Similarity=0.095 Sum_probs=235.6
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhC--CCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc---------------------CC
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKL--PRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS---------------------KP 266 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~l--p~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS---------------------K~ 266 (522)
+||+||||++.|++|+++|++++ ++++++||+|||+++.|+++++++|+|+||+| |+
T Consensus 2 ~tP~yvyd~~~i~~~~~~l~~~~~~~~~~i~YAvKAN~~~~il~~l~~~g~G~D~aS~gEl~~al~a~~~~~i~~~~~k~ 81 (380)
T TIGR01047 2 PTPAFVLEEEKLRKNLEILEHVQQQSGAKVLLALKGFAFWGVFPILREYLDGCTASGLWEAKLAKEEFGKEIHVYSPAYS 81 (380)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHhhcCCEEEEEEcccCChHHHHHHHHHCCcccccCHHHHHHHHHHCCCcEEEECCCCC
Confidence 79999999999999999999887 47899999999999999999999999999999 89
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhC--C--CCeEEEEEeeCCCcc------cCCCCCccccCcCCCHHHHHHHHh
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFH--P--TAQLVIRIRCDAEVA------QCQLGMKFGCDPISEAPRLLRLAK 336 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~--~--~~~V~LRIn~~~~~~------~~~~~sKFGi~~e~e~~~ll~~~k 336 (522)
++||++|+++|+ .+++||++||++|.+++ + .++|+|||||+.... ++...||||++++ ++.+.+
T Consensus 82 ~~el~~a~~~g~-~i~idS~~el~~l~~~a~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~~~-~~~~~~---- 155 (380)
T TIGR01047 82 EEDVPEIIPLAD-HIIFNSLAQWARYRHLVEGKNSAVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQAD-HFEESL---- 155 (380)
T ss_pred HHHHHHHHHcCC-EEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCcccccCCCCCCCCCCCHH-HHhHhH----
Confidence 999999999998 69999999999999976 3 358999999975422 2445799999987 766542
Q ss_pred hCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC-CCHHHHHHHHHHHHHhhCCCC
Q psy9378 337 SLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG-YSMNRIAEIINVALDEYFPVE 415 (522)
Q Consensus 337 ~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~-~~~~~~a~~I~~~l~~~~~~~ 415 (522)
.+++.|||||+||+ .+.+.|.+.++.+.++++ +.+.++++|||||||+++|. .+++++++.+++.++++
T Consensus 156 --~~~i~GlH~HiGS~-~~~~~~~~~i~~~~~~~~---~~~~~~~~iDiGGGfgv~y~~~~~~~~~~~i~~~~~~~---- 225 (380)
T TIGR01047 156 --LDGINGLHFHTLCE-KDADALERTLEVIEERFG---EYLPQMDWVNFGGGHHITKPGYDVEKLIAVIKAFAERH---- 225 (380)
T ss_pred --hhcCcEEEEecCCC-CCHHHHHHHHHHHHHHHH---HhhCCCCEEEeCCCcCCCCCCCCHHHHHHHHHHHHHHh----
Confidence 35788999999999 899999888887766553 33347999999999999874 58999998888887653
Q ss_pred CCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcc--------hhhhcccCccccccCCCCC
Q psy9378 416 EGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSF--------NCIIYDHAVCTPIPFNVMD 487 (522)
Q Consensus 416 ~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~--------~~~l~~~~~~~p~~~~~~~ 487 (522)
+++|++|||||+|++||+++|+|+++|+. + +.++++|+||++.+ ++.+|+..+.+....+...
T Consensus 226 -~~~li~EPGR~lva~ag~lv~~V~~~K~~-~-------~~~~~vD~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 296 (380)
T TIGR01047 226 -GVQVILEPGEAIGWQTGFLVASVVDIVEN-E-------KKIAILDVSFEAHMPDTLEMPYRPSVLGASDPATRENEEIS 296 (380)
T ss_pred -CCEEEEeCchHHHhcCeeEEEEEEEEEEC-C-------eeEEEEecChHhcChhhhccCCCcccccCCCcccccccccc
Confidence 58999999999999999999999999975 4 57999999999887 3444433222111111111
Q ss_pred CCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 488 DSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 488 ~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
......+++|+||+|+++|+++. ||+|++.-.|||
T Consensus 297 ~~~~~~~~~v~G~~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY 340 (380)
T TIGR01047 297 LKEGQFSYVLGGCTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHY 340 (380)
T ss_pred ccCCceeEEEEcCCCCcccEEeecccCCCCCCCCEEEEcCcCCh
Confidence 11245679999999999997764 699999877777
No 17
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=9.8e-51 Score=427.58 Aligned_cols=301 Identities=21% Similarity=0.243 Sum_probs=259.2
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc----------------------CCH
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----------------------KPI 267 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----------------------K~~ 267 (522)
-|+||||++.|++|+++|+++++ +++++||+|||+++.|+++|.+.|.||||+| |+.
T Consensus 2 ~~~yv~d~~~l~~N~~~l~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~~~~~~I~~~gp~k~~ 81 (377)
T cd06843 2 LCAYVYDLAALRAHARALRASLPPGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAVPDAPLIFGGPGKTD 81 (377)
T ss_pred eEEEEEcHHHHHHHHHHHHHhcCCCCeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHhcCCCCeEEEeCCCCCH
Confidence 59999999999999999999998 7899999999999999999999899999999 899
Q ss_pred HHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCC---c---ccCCCCCccccCcCCCHHHHHHHHhh
Q psy9378 268 SHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAE---V---AQCQLGMKFGCDPISEAPRLLRLAKS 337 (522)
Q Consensus 268 ~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~---~---~~~~~~sKFGi~~e~e~~~ll~~~k~ 337 (522)
++|+.|+++|+..+++||++||++|.+++ ++.+|+|||+++.. + .+....+|||++++ ++.++++.+++
T Consensus 82 ~~l~~a~~~gi~~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~-~~~~~~~~~~~ 160 (377)
T cd06843 82 SELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEA-DLPDALELLRD 160 (377)
T ss_pred HHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcCHH-HHHHHHHHHHh
Confidence 99999999999778999999999998875 35799999999744 1 12234489999998 89999998887
Q ss_pred C-CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHH-HhhcCCCccEEEEcCCCCCCC-----CCCHHHHHHHHHHHHHh
Q psy9378 338 L-DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDL-GNSLGFSMRVLDLGGGYPGYT-----GYSMNRIAEIINVALDE 410 (522)
Q Consensus 338 ~-~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~-~~~~G~~l~~LdIGGGf~~~~-----~~~~~~~a~~I~~~l~~ 410 (522)
. ++++.|||||+||++.+++.|.++++.+.++++. .++.|+++++|||||||+++| ..+++++++.|++.+++
T Consensus 161 ~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGGf~~~y~~~~~~~~~~~~~~~i~~~~~~ 240 (377)
T cd06843 161 LPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLLAE 240 (377)
T ss_pred CCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCCCCcEEEecCccccccCCCCCCCCHHHHHHHHHHHHHh
Confidence 4 8999999999999999999999999988777654 456799999999999999876 25799999999999998
Q ss_pred hCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCC----
Q psy9378 411 YFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVM---- 486 (522)
Q Consensus 411 ~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~---- 486 (522)
++ .+++|++|||||+|++||+|+|+|+++|..++ ++++++|+|+++..+|.+|+..|++..+....
T Consensus 241 ~~---~~~~l~~EpGR~lva~ag~lv~~V~~~k~~~~-------~~~~~~d~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 310 (377)
T cd06843 241 YE---PGLTLRFECGRYISAYCGYYVTEVLDLKRSHG-------EWFAVLRGGTHHFRLPAAWGHNHPFSVLPVEEWPYP 310 (377)
T ss_pred cC---CCCEEEEccChhhhcCceEEEEEEEEEeecCC-------cEEEEEeCccccccchHHhcCCCceEeccccccccc
Confidence 74 46899999999999999999999999998766 68999999999988899998877655433221
Q ss_pred --CCCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 487 --DDSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 487 --~~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
.+.....+++|+||+|+++|+++. ||+|++.-.|||
T Consensus 311 ~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~i~~~GAY 357 (377)
T cd06843 311 WPRPSVRDTPVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAY 357 (377)
T ss_pred cccccCCceEEEEEeCCCCCCCEEeeccccCCCCCCCEEEEcCCCcc
Confidence 122345789999999999998776 699999666666
No 18
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=2.9e-50 Score=424.07 Aligned_cols=306 Identities=23% Similarity=0.267 Sum_probs=260.6
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhCCC-CeEEeeecCCCcHHHHHHHHHcCCeEEEEc---------------------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKLPR-VDPYYAVKCNDSQMVLEVLAALGTGFDCAS--------------------- 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~lp~-~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS--------------------- 264 (522)
++++|||||||++.|++|+++|++++++ ++++||+|||+++.|++++.+.|.||||+|
T Consensus 3 ~~~~tP~~v~d~~~l~~n~~~l~~~~~~~~~~~yavKan~~~~v~~~l~~~g~g~~vaS~~E~~~~~~~G~~~~~I~~~~ 82 (382)
T cd06839 3 DAYGTPFYVYDRDRVRERYAALRAALPPAIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKILFAG 82 (382)
T ss_pred cccCCCEEEEeHHHHHHHHHHHHHhcCCCcEEEEEeccCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCHHHEEEeC
Confidence 6789999999999999999999999984 899999999999999999999999999999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCc-----ccCCCCCccccCcCCCHHHHHH
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEV-----AQCQLGMKFGCDPISEAPRLLR 333 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~-----~~~~~~sKFGi~~e~e~~~ll~ 333 (522)
|++++|+.|++.|+..+++||++||++|.+.+ +..+|+||||++... .+....+|||++++ ++.++++
T Consensus 83 ~~k~~~~l~~a~~~g~~~i~vds~~el~~l~~~a~~~~~~~~v~lRin~~~~~~~~g~~~~~~~sKfG~~~~-~~~~~~~ 161 (382)
T cd06839 83 PGKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMGGGPSQFGIDVE-ELPAVLA 161 (382)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCccccCCCCCCcCCCHH-HHHHHHH
Confidence 89999999999996569999999999999874 347999999986432 12344699999998 9999999
Q ss_pred HHhh-CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHh-hcCCCccEEEEcCCCCCCC-----CCCHHHHHHHHHH
Q psy9378 334 LAKS-LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGN-SLGFSMRVLDLGGGYPGYT-----GYSMNRIAEIINV 406 (522)
Q Consensus 334 ~~k~-~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~-~~G~~l~~LdIGGGf~~~~-----~~~~~~~a~~I~~ 406 (522)
.+++ .++++.|||||+||+..+.+.+.++++++.++++.++ +.|.++++||+||||+..+ ..++++++..|..
T Consensus 162 ~~~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~i~~ 241 (382)
T cd06839 162 RIAALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYFPGETPLDLEALGAALAA 241 (382)
T ss_pred HHHhCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEecCccccccCCCCCCCCHHHHHHHHHH
Confidence 9887 6999999999999999899999999999888886554 5789999999999998765 3589999999999
Q ss_pred HHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhh-----cccCccccc
Q psy9378 407 ALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCII-----YDHAVCTPI 481 (522)
Q Consensus 407 ~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l-----~~~~~~~p~ 481 (522)
.++++.....+++|++|||||++++||+|+|+|+++|+..+ +.|+++|+|+++.+++.+ |...+++.+
T Consensus 242 ~l~~~~~~~~~~~l~~EPGR~l~~~ag~lv~~V~~~k~~~~-------~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~ 314 (382)
T cd06839 242 LLAELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRG-------ETFLVTDGGMHHHLAASGNFGQVLRRNYPLAI 314 (382)
T ss_pred HHHHHhcCCCCceEEEecChhhhhhceEEEEEEEEEeecCC-------CEEEEEECCcccchhhhccccccccccceeEE
Confidence 99987432357899999999999999999999999998766 689999999999887655 444333222
Q ss_pred cCCCCCCCCcceEEeeecCCCCCcccccc---------CcEEEEeccccC
Q psy9378 482 PFNVMDDSQVSLRSPLFLQESFLLSCLSL---------FFCVLWLCGQVY 522 (522)
Q Consensus 482 ~~~~~~~~~~~~~~~l~Gp~C~~~D~l~~---------~~~~~~~~~~~~ 522 (522)
. .. .+.+...++.++||+|+++|+++. ||.|+|...|+|
T Consensus 315 ~-~~-~~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY 362 (382)
T cd06839 315 L-NR-MGGEERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAY 362 (382)
T ss_pred c-cC-CCCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEecCCCc
Confidence 2 22 122356789999999999997764 799999777777
No 19
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=1.6e-50 Score=464.57 Aligned_cols=363 Identities=19% Similarity=0.225 Sum_probs=290.4
Q ss_pred CccccccCC-CCceEEeecCCCceee---eehhhccC--cc-cccCCCCccCCCCCCCCccccccCCcceEEecCCCCCC
Q psy9378 123 NVNMKLQNP-EDQIYVLDRGNDAVHV---MKSIILSG--VP-VYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRTDDMT 195 (522)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (522)
|++|..|.. |-.|.++=+.+|+... +...++.+ ++ |...|-|-.-.|..++..+||-.+-..+
T Consensus 426 ~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------- 495 (861)
T PRK08961 426 RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIESGAMPVVFGPRWREIFGSVRPRPTPWWHAERARL---------- 495 (861)
T ss_pred CeEEEECCCccccEEEEEeHHHHHHHHHHHHHHHhcCCCCceeeCccHHHhcCCCCCCCCchHHHHHHHH----------
Confidence 688888865 5678666666665433 32223322 22 3344434444455666677884332222
Q ss_pred CccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------
Q psy9378 196 QVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----------- 264 (522)
Q Consensus 196 g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----------- 264 (522)
.+++ + .+|||||||++.|++|+++|++.++..+++||+|||+++.|++++.+.|+||||+|
T Consensus 496 ----~~~~---~-~~tP~yV~d~~~i~~n~~~l~~~~~~~~i~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~ 567 (861)
T PRK08961 496 ----LTLS---D-AGSPCYVYHLPTVRARARALAALAAVDQRFYAIKANPHPAILRTLEEEGFGFECVSIGELRRVFELF 567 (861)
T ss_pred ----HHHh---c-cCCCEEEEEHHHHHHHHHHHHhcCCCCcEEEEeecCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHhc
Confidence 2333 3 58999999999999999999997777899999999999999999999999999999
Q ss_pred --------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCc------ccCCCCCccccCc
Q psy9378 265 --------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEV------AQCQLGMKFGCDP 324 (522)
Q Consensus 265 --------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~------~~~~~~sKFGi~~ 324 (522)
|+.++|+.|+++|+. +++||++||++|.+++++++++||||++... .+....||||+++
T Consensus 568 ~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-i~vDS~~EL~~i~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~ 646 (861)
T PRK08961 568 PELSPERVLFTPNFAPRAEYEAAFALGVT-VTLDNVEPLRNWPELFRGREVWLRIDPGHGDGHHEKVRTGGKESKFGLSQ 646 (861)
T ss_pred CCCCCCeEEECCCCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHhCCCCcEEEEECCCCCCCCCcccccCCCCCCCCCCH
Confidence 899999999999995 9999999999999999989999999997542 2345679999999
Q ss_pred CCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-----CCCHHH
Q psy9378 325 ISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-----GYSMNR 399 (522)
Q Consensus 325 e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-----~~~~~~ 399 (522)
+ ++.++++.+++.++++.|+|||+|||+.+++.|.+.++.+.++.+ +. .++++|||||||+++| +.+++.
T Consensus 647 ~-~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~---~~-~~~~~iDiGGGf~v~y~~~~~~~~~~~ 721 (861)
T PRK08961 647 T-RIDEFVDLAKTLGITVVGLHAHLGSGIETGEHWRRMADELASFAR---RF-PDVRTIDLGGGLGIPESAGDEPFDLDA 721 (861)
T ss_pred H-HHHHHHHHHHhCCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHH---hc-cCCcEEEecCccCcCCCCCCCCCCHHH
Confidence 8 999999999889999999999999999999999887766555443 33 3799999999999876 247999
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccc
Q psy9378 400 IAEIINVALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCT 479 (522)
Q Consensus 400 ~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~ 479 (522)
|++.|.+.++.+ .+++|++|||||++++||+++|+|+++|+..+ ++|+++|+|+++..++.+|+.+|+.
T Consensus 722 ~~~~i~~~~~~~----~~~~li~EPGR~lva~ag~lvt~V~~vK~~~~-------~~~~~~d~G~~~l~~p~~~~~~~~~ 790 (861)
T PRK08961 722 LDAGLAEVKAQH----PGYQLWIEPGRYLVAEAGVLLARVTQVKEKDG-------VRRVGLETGMNSLIRPALYGAYHEI 790 (861)
T ss_pred HHHHHHHHHhhc----CCCEEEEccCceeeecceEEEEEEEEEEecCC-------ceEEEECCcccccCChhhhcccccc
Confidence 988888765543 46899999999999999999999999998766 6899999999998899999987766
Q ss_pred cccCCCCCCCCcceEEeeecCCCCCccccc---------cCcEEEEeccccC
Q psy9378 480 PIPFNVMDDSQVSLRSPLFLQESFLLSCLS---------LFFCVLWLCGQVY 522 (522)
Q Consensus 480 p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~---------~~~~~~~~~~~~~ 522 (522)
+.+... +.+...+++|+||+|+++|+++ .||+|+|.--|+|
T Consensus 791 ~~~~~~--~~~~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY 840 (861)
T PRK08961 791 VNLSRL--DEPAAGTADVVGPICESSDVLGKRRRLPATAEGDVILIANAGAY 840 (861)
T ss_pred eecCCC--CCCCceEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEeCCCcc
Confidence 554222 2234568999999999999886 4799999666666
No 20
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=1.6e-48 Score=416.48 Aligned_cols=298 Identities=19% Similarity=0.253 Sum_probs=242.6
Q ss_pred cCCCCCeEEEEeHHHHHHHHHHHHHhCC----CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------
Q psy9378 206 VGMKEDAFYVLDVGEIVRKHEDWKLKLP----RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----------------- 264 (522)
Q Consensus 206 ~~~~~tP~yV~Dl~~I~~ni~~l~~~lp----~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----------------- 264 (522)
+++++||+||||+++|++|+++++++++ +++++||+|||+++.|++++.+.|+||||+|
T Consensus 5 ~~~~~TP~~v~d~~~l~~N~~~l~~~~~~~~~~~~~~yavKaN~~~~il~~l~~~G~g~dvaS~~E~~~~~~~G~~~~~I 84 (423)
T cd06842 5 VEAYGSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVRGDRI 84 (423)
T ss_pred HHhhCCCEEEEcHHHHHHHHHHHHHHHHHhCCCeEEEEEeccCCCHHHHHHHHHcCCCEEECCHHHHHHHHHCCCCCCeE
Confidence 3678999999999999999999999885 5789999999999999999999999999999
Q ss_pred ------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC-----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHH
Q psy9378 265 ------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH-----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLR 333 (522)
Q Consensus 265 ------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~-----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~ 333 (522)
|+.++++.|++.|+ .+++||++||++|.+++ ++.+|+||||++.. ...+|||++++ ++.++++
T Consensus 85 ~~~g~~k~~~~i~~a~~~gi-~i~vDs~~el~~l~~~a~~~~~~~~~v~lRIn~~~~----~~~sRfGi~~~-e~~~~~~ 158 (423)
T cd06842 85 VATGPAKTDEFLWLAVRHGA-TIAVDSLDELDRLLALARGYTTGPARVLLRLSPFPA----SLPSRFGMPAA-EVRTALE 158 (423)
T ss_pred EEECCCCCHHHHHHHHhCCC-EEEECCHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC----CCCCCCCCCHH-HHHHHHH
Confidence 88899999999999 59999999999998865 45799999999753 34699999987 8999999
Q ss_pred HHhhC--CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCC---CHHHHHHHHHHHH
Q psy9378 334 LAKSL--DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGY---SMNRIAEIINVAL 408 (522)
Q Consensus 334 ~~k~~--~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~---~~~~~a~~I~~~l 408 (522)
.+++. ++++.|||+|+||+ +.+.+.++++.+.++++.+++.|+++++|||||||+++|.. +|+.++..+++.+
T Consensus 159 ~i~~~~~~l~l~Glh~H~gs~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~~~~y~~~~~~~~~~~~~~~~~~ 236 (423)
T cd06842 159 RLAQLRERVRLVGFHFHLDGY--SAAQRVAALQECLPLIDRARALGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEAL 236 (423)
T ss_pred HHHhcCCCCeEEEEEEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCcCCcHHHHHHHHHhhhhhh
Confidence 88875 99999999999998 78889999999999988888889999999999999988632 2333333333222
Q ss_pred -------------------------------------------------HhhCCCCCCcEEEecCcceeeccceeEEEEE
Q psy9378 409 -------------------------------------------------DEYFPVEEGVSIIAEPGRYYVASAFTLATLI 439 (522)
Q Consensus 409 -------------------------------------------------~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V 439 (522)
++.+. ..+++|++|||||+|++||+|+|+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~EpGR~lva~ag~lvt~V 315 (423)
T cd06842 237 YGYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLR-DNGITLALEPGRALLDQCGLTVARV 315 (423)
T ss_pred hccCCcccccccccccCCCcccccCCCCCCHHHHHHHHHhccccccccHHHHHH-hcCCEEEEcCCHHHHhhcCeEEEEE
Confidence 22221 2367999999999999999999999
Q ss_pred EEEEee-CCCCCCCCceEEEEEcCCCcCcchhhhcccCccc-cccCCCCC-C-CCcceEEeeecCCCCCccccc------
Q psy9378 440 HSKRDI-LGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCT-PIPFNVMD-D-SQVSLRSPLFLQESFLLSCLS------ 509 (522)
Q Consensus 440 ~~~K~~-~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~-p~~~~~~~-~-~~~~~~~~l~Gp~C~~~D~l~------ 509 (522)
+++|++ .+ +.++++|+|+++.. + |++.+.+ |....... . .....+.+|+||+|+++|.|+
T Consensus 316 ~~vK~~~~~-------~~~~~~Dgg~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~~l 385 (423)
T cd06842 316 AFVKQLGDG-------NHLIGLEGNSFSAC-E--FSSEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRRKIPF 385 (423)
T ss_pred EEEeecCCC-------CeEEEEecCCCcCC-c--cccceecCceeccCCCCcCCCCCceEEEeCccccchhhhhhhhccC
Confidence 999987 33 57888888887653 2 6655433 33222211 1 223567899999999999877
Q ss_pred -----cCcEEEEeccccC
Q psy9378 510 -----LFFCVLWLCGQVY 522 (522)
Q Consensus 510 -----~~~~~~~~~~~~~ 522 (522)
.||.|+|...|||
T Consensus 386 p~~~~~GD~l~~~~~GAY 403 (423)
T cd06842 386 PRLPKPGDLLVFPNTAGY 403 (423)
T ss_pred CCCCCCCCEEEEecchHH
Confidence 3799999777777
No 21
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00 E-value=3.4e-42 Score=379.78 Aligned_cols=327 Identities=19% Similarity=0.162 Sum_probs=269.0
Q ss_pred CcceEEecCCCCCCCccccCCcccc--CCCCCeEEEEeHHHHHHHHHHHHHhCC----------CCeEEeeecCCCcHHH
Q psy9378 182 PKSLMVYPRTDDMTQVPVYNYPDNV--GMKEDAFYVLDVGEIVRKHEDWKLKLP----------RVDPYYAVKCNDSQMV 249 (522)
Q Consensus 182 ~~~~~~~~~~~~~~g~~l~~l~~~~--~~~~tP~yV~Dl~~I~~ni~~l~~~lp----------~~~i~YAvKAN~~~~V 249 (522)
.+++.|.+....-.++++.+|++.+ +.++||+||+|++.|++|+++|+++|+ +.+++||+|||+++.|
T Consensus 33 ~G~~~v~p~~~~~~~i~L~~l~~~~~~~~~gtPlyV~~~~~L~~ri~~L~~aF~~a~~~~~y~g~~~~~YAiKaN~~~~V 112 (634)
T PRK05354 33 KGHVSVRPDGDPGASIDLAELVKELRERGLRLPLLLRFPDILQDRVRSLNAAFKKAIEEYGYQGDYRGVYPIKVNQQRRV 112 (634)
T ss_pred CCCEEEecCCCCCCCcCHHHHHHHhhccCCCCCEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEeccCChHHH
Confidence 6888888887766778888888543 348999999999999999999999996 3589999999999999
Q ss_pred HHHHHHcC----CeEEEEc-----------------------CCHHHHHHHHHc---CCC-EEEEcCHHHHHHHhhhCC-
Q psy9378 250 LEVLAALG----TGFDCAS-----------------------KPISHIRYAAEY---GID-TMTFDNEIELQKVKQFHP- 297 (522)
Q Consensus 250 lk~L~~~G----~GfDvaS-----------------------K~~~eL~~A~~~---Gv~-~i~vDS~~EL~~i~~~~~- 297 (522)
++.+.+.| +|+||+| |+.++|+.|+.. |.. .+++||++||++|.++++
T Consensus 113 l~~l~~~G~~~~~GlEv~S~~EL~~AL~~g~~~~~lIi~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~ 192 (634)
T PRK05354 113 VEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGALIVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKE 192 (634)
T ss_pred HHHHHHcCCCCceeEEECCHHHHHHHHHcCCCCCcEEEcCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHh
Confidence 99999999 8999999 888899998744 433 589999999999999864
Q ss_pred ---CCeEEEEEeeCCCc-----ccCCCCCccccCcCCCHHHHHHHHhhCC-C-eEEEEEEecCCCCCChHHHHHHHHHHH
Q psy9378 298 ---TAQLVIRIRCDAEV-----AQCQLGMKFGCDPISEAPRLLRLAKSLD-L-DVVGVSFHVGSGCGDPPVFGRAIYSAR 367 (522)
Q Consensus 298 ---~~~V~LRIn~~~~~-----~~~~~~sKFGi~~e~e~~~ll~~~k~~~-L-~l~GlhfH~GS~~~~~~~~~~ai~~~~ 367 (522)
+.+|+|||++.... .++...||||++.+ |+.++++.+++.+ + .+.|||||+|||+.+++.|.++++++.
T Consensus 193 ~~~~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~~~-ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~ 271 (634)
T PRK05354 193 LGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLSAT-EVLEAVERLREAGLLDCLQLLHFHLGSQIANIRDIKTAVREAA 271 (634)
T ss_pred cCCCCeEEEEEecCCCCCCCcccCCCCCCCCCCCHH-HHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 46899999986432 23455799999998 9999999999876 4 699999999999999999999999999
Q ss_pred HHHHHHhhcCCCccEEEEcCCCCCCCC-----------CCHHHHHHHHHHHHHhhCCC--CCCcEEEecCcceeecccee
Q psy9378 368 QIFDLGNSLGFSMRVLDLGGGYPGYTG-----------YSMNRIAEIINVALDEYFPV--EEGVSIIAEPGRYYVASAFT 434 (522)
Q Consensus 368 ~l~~~~~~~G~~l~~LdIGGGf~~~~~-----------~~~~~~a~~I~~~l~~~~~~--~~~~~li~EPGR~lva~ag~ 434 (522)
+++..+++.|.++++|||||||+++|. +++++|++.|...+++++.. .+.++|++|||||+||++|+
T Consensus 272 ~~~~eL~~~G~~l~~LDIGGGlgV~Y~g~~~~~~~s~nydl~eya~~Iv~~l~~~~~~~~v~~p~Ii~EpGRalVA~agv 351 (634)
T PRK05354 272 RFYVELRKLGAPIQYLDVGGGLGVDYDGTRSQSDSSVNYSLQEYANDVVYTLKEICEEHGVPHPTIISESGRALTAHHAV 351 (634)
T ss_pred HHHHHHHHcCCCCCEEEeCCCcCcCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchhhhcceE
Confidence 999888888999999999999998751 47999999999999887642 24689999999999999999
Q ss_pred EEEEEEEEEeeCCCCCC-----C---------------------------------------------------------
Q psy9378 435 LATLIHSKRDILGANSS-----V--------------------------------------------------------- 452 (522)
Q Consensus 435 Lvt~V~~~K~~~~~~~g-----~--------------------------------------------------------- 452 (522)
|+|+|+++|...+.... .
T Consensus 352 Lvt~V~~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~ 431 (634)
T PRK05354 352 LVFNVLGVESQEYEEPPAPAEDAPPLLQNLWETYQEISERNLQEIYHDAQQDLEEALTLFALGYLSLQERAWAEQLYWAI 431 (634)
T ss_pred EEEEEEEEEecCCCCCCCCcccccHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999986532100 0
Q ss_pred ---------Cc--------------eEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc
Q psy9378 453 ---------PT--------------HTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS 509 (522)
Q Consensus 453 ---------~~--------------~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~ 509 (522)
.. ..+|++|-+++.|+...+--. ...|++--.+-++.+..+..|..=||.|.+++.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~-Q~Fpi~Pi~rl~e~p~~~~~l~DiTCDSDg~i~ 510 (634)
T PRK05354 432 CRKIQKLLDPKNRHPPELDELQERLADKYYVNFSLFQSLPDAWAID-QLFPIMPLHRLDEEPTRRAVLADITCDSDGKID 510 (634)
T ss_pred HHHHHHHhcccccCcHHHHHHHHHhhhheEEeeehhccccchhhhC-CccceeeccccCCCcceeeEEecccccCCCchh
Confidence 00 028999999999986664323 344554333344556788999999999999776
Q ss_pred c
Q psy9378 510 L 510 (522)
Q Consensus 510 ~ 510 (522)
.
T Consensus 511 ~ 511 (634)
T PRK05354 511 Q 511 (634)
T ss_pred c
Confidence 5
No 22
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=100.00 E-value=5.1e-42 Score=378.18 Aligned_cols=328 Identities=19% Similarity=0.164 Sum_probs=268.6
Q ss_pred CCcceEEecCCC-CCCCccccCCcccc--CCCCCeEEEEeHHHHHHHHHHHHHhCC----------CCeEEeeecCCCcH
Q psy9378 181 IPKSLMVYPRTD-DMTQVPVYNYPDNV--GMKEDAFYVLDVGEIVRKHEDWKLKLP----------RVDPYYAVKCNDSQ 247 (522)
Q Consensus 181 ~~~~~~~~~~~~-~~~g~~l~~l~~~~--~~~~tP~yV~Dl~~I~~ni~~l~~~lp----------~~~i~YAvKAN~~~ 247 (522)
..+++.|.+... .-.+++|.++++.+ +.++||+||+|++.|++|+++|+++|+ +++++||+|||+++
T Consensus 24 ~~G~~~v~p~~~~~~~~i~l~~~v~~~~~~g~~tPl~V~d~~iL~~~i~~l~~aF~~a~~~~~Y~g~~~~~YavKaN~~~ 103 (624)
T TIGR01273 24 KDGNVCVRPGGRDTLQSIDLLELVDQVRARGLQLPLLVRFPDILQHRIRSLNDAFANAIEEYQYAGHYQGVYPIKVNQHR 103 (624)
T ss_pred CCeeEEEeeCCCCCCCCcCHHHHHHHHHhcCCCCCEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCeeEEEEeccCCcH
Confidence 368899988764 45678898888776 457799999999999999999999996 36899999999999
Q ss_pred HHHHHHHHcC----CeEEEEc-----------------------CCHHHHHHHHH---cCCC-EEEEcCHHHHHHHhhhC
Q psy9378 248 MVLEVLAALG----TGFDCAS-----------------------KPISHIRYAAE---YGID-TMTFDNEIELQKVKQFH 296 (522)
Q Consensus 248 ~Vlk~L~~~G----~GfDvaS-----------------------K~~~eL~~A~~---~Gv~-~i~vDS~~EL~~i~~~~ 296 (522)
.|++.+.+.| +|+||+| |+.++|+.|+. .|.. .|++||++||++|.+++
T Consensus 104 ~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~g~~p~~~Ii~NG~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a 183 (624)
T TIGR01273 104 SVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAPIVCNGYKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEA 183 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCHHHHHHHHHcCCCCCCEEEeCCCCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHH
Confidence 9999999999 8999999 88899999874 3333 58999999999999986
Q ss_pred C----CCeEEEEEeeCCCc-----ccCCCCCccccCcCCCHHHHHHHHhhCCC--eEEEEEEecCCCCCChHHHHHHHHH
Q psy9378 297 P----TAQLVIRIRCDAEV-----AQCQLGMKFGCDPISEAPRLLRLAKSLDL--DVVGVSFHVGSGCGDPPVFGRAIYS 365 (522)
Q Consensus 297 ~----~~~V~LRIn~~~~~-----~~~~~~sKFGi~~e~e~~~ll~~~k~~~L--~l~GlhfH~GS~~~~~~~~~~ai~~ 365 (522)
+ ..+|+|||++.... .++...||||++.+ ++.++++.+++.++ .+.|||||+|||+.+.+.|.++++.
T Consensus 184 ~~~~~~~~IglRvnl~~~~~g~~~~tgg~~SKFGl~~~-ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~ 262 (624)
T TIGR01273 184 KKLGVKPKLGLRARLASKGSGKWASSGGEKSKFGLSAT-QILEVVRLLEQNGLLDCLKLLHFHIGSQISNIDDVKKGVRE 262 (624)
T ss_pred HhcCCCceEEEEEecCCCCCCCcccCCCCCCCCCCCHH-HHHHHHHHHHhcCCCCceEEEEEeCCCCCCCHHHHHHHHHH
Confidence 4 36899999986432 23445699999998 99999999988764 4999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccEEEEcCCCCCCCC-----------CCHHHHHHHHHHHHHhhCCC--CCCcEEEecCcceeeccc
Q psy9378 366 ARQIFDLGNSLGFSMRVLDLGGGYPGYTG-----------YSMNRIAEIINVALDEYFPV--EEGVSIIAEPGRYYVASA 432 (522)
Q Consensus 366 ~~~l~~~~~~~G~~l~~LdIGGGf~~~~~-----------~~~~~~a~~I~~~l~~~~~~--~~~~~li~EPGR~lva~a 432 (522)
+.+++..+++.|.++++|||||||+++|. +++++|++.|...+++++.. .+.++|++|||||+||++
T Consensus 263 ~~~i~~eL~~~G~~l~~LDIGGGlgV~Y~g~~~~~~~s~~y~leeya~~Iv~~l~~~~~~~~~~~p~Ii~EpGR~lvA~a 342 (624)
T TIGR01273 263 AARFYCELRKLGAKITYVDVGGGLGVDYDGTSSSSDCSVNYGLEEYAADVVQALREICDEKGVPHPVIITESGRAITAHH 342 (624)
T ss_pred HHHHHHHHHHcCCCCCEEEeCCCcCCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCCchhccc
Confidence 99999888889999999999999998763 57999999999999988642 146899999999999999
Q ss_pred eeEEEEEEEEEeeCCC-C-C--------------------------------------------C---------------
Q psy9378 433 FTLATLIHSKRDILGA-N-S--------------------------------------------S--------------- 451 (522)
Q Consensus 433 g~Lvt~V~~~K~~~~~-~-~--------------------------------------------g--------------- 451 (522)
|+|+|+|+++|..... . . |
T Consensus 343 gvLVt~V~~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~G~l~l~~ra~~e~l~~ 422 (624)
T TIGR01273 343 AVLITNVLGVERHEYDPDPKIKEDTPPLVRTLRELYGSIDRRSAIEILHDAQHLKEEAVEGFKLGYLDLEQRAWAEQLYL 422 (624)
T ss_pred eEEEEEEEEEeccCCCCCCCCcccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999975422 0 0 0
Q ss_pred -----------C-------------CceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccc
Q psy9378 452 -----------V-------------PTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSC 507 (522)
Q Consensus 452 -----------~-------------~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~ 507 (522)
. ....+|++|-+++.|+...+--. ...|++--.+-++.+..+.+|..=||.|.++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~fqslPD~Wai~-Q~Fpi~Pl~rl~e~p~~~~~l~DiTCDSDg~ 501 (624)
T TIGR01273 423 SICRKVHQLSAKNKDHRPILDELQERLADKYFVNFSVFQSLPDAWGID-QLFPIMPLSRLDEKPTRRAVLQDITCDSDGK 501 (624)
T ss_pred HHHHHHHHHHhccccCchHHHHHHHhhhhheEEehhhhccccchhhhC-CccceecCCCCCCCccceEEEeccCCCCCCc
Confidence 0 00128999999999986664322 3445543333444567889999999999986
Q ss_pred ccc
Q psy9378 508 LSL 510 (522)
Q Consensus 508 l~~ 510 (522)
+..
T Consensus 502 i~~ 504 (624)
T TIGR01273 502 IDQ 504 (624)
T ss_pred hhc
Confidence 655
No 23
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=100.00 E-value=4.7e-40 Score=328.01 Aligned_cols=214 Identities=37% Similarity=0.540 Sum_probs=184.3
Q ss_pred eHHHHHHHHHHHH-HhCCC-CeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------CCHHHHH
Q psy9378 217 DVGEIVRKHEDWK-LKLPR-VDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KPISHIR 271 (522)
Q Consensus 217 Dl~~I~~ni~~l~-~~lp~-~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K~~~eL~ 271 (522)
|+++++++++++. +.+|. ++++||+|||+++.|++++.+.|+|+||+| |+.++|+
T Consensus 1 d~~~~~~~~~~~~~~~~~~~~~i~yA~KaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~g~~~~~Ii~~gp~k~~~~l~ 80 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAFLPYNVKIFYAVKANPNPAVLKILAEEGCGFDVASPGELELALKAGFPPDRIIFTGPGKSDEELE 80 (251)
T ss_dssp EHHHHHHHHHHHHHHHTTT-EEEEEEGGGS--HHHHHHHHHTTCEEEESSHHHHHHHHHTTTTGGGEEEECSS--HHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEEECcCCCHHHHHHHHHcCCceEEecccchHHHHhhhccccceeEecCcccHHHHH
Confidence 7887788877755 55575 999999999999999999999999999999 9999999
Q ss_pred HHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCc------ccCCCCCccccCcCCC-HHHHHHHHhhCCCeEEE
Q psy9378 272 YAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEV------AQCQLGMKFGCDPISE-APRLLRLAKSLDLDVVG 344 (522)
Q Consensus 272 ~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~------~~~~~~sKFGi~~e~e-~~~ll~~~k~~~L~l~G 344 (522)
.|+++|+..+++||++||++|.+++++.+|+||||++... .++...||||++++ + +.++++.+++.++++.|
T Consensus 81 ~a~~~~~~~i~vDs~~el~~l~~~~~~~~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~-~~~~~~l~~~~~~~l~l~G 159 (251)
T PF02784_consen 81 EAIENGVATINVDSLEELERLAELAPEARVGLRINPGIGAGSHPKISTGGKDSKFGIDIE-EEAEEALERAKELGLRLVG 159 (251)
T ss_dssp HHHHHTESEEEESSHHHHHHHHHHHCTHEEEEEBE-SESTTTSCHHCSSSHTSSSSBEGG-GHHHHHHHHHHHTTEEEEE
T ss_pred HHHhCCceEEEeCCHHHHHHHhccCCCceeeEEEeeccccccccccCCCCCCCcCCcChH-HHHHHHHHhhccceEEEEE
Confidence 9999888789999999999999999888999999998321 23445689999998 8 99999999998899999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHh-hcCCC-ccEEEEcCCCCCCC--CCCHHHHHHHHHHHHHhhCCC-CCCcE
Q psy9378 345 VSFHVGSGCGDPPVFGRAIYSARQIFDLGN-SLGFS-MRVLDLGGGYPGYT--GYSMNRIAEIINVALDEYFPV-EEGVS 419 (522)
Q Consensus 345 lhfH~GS~~~~~~~~~~ai~~~~~l~~~~~-~~G~~-l~~LdIGGGf~~~~--~~~~~~~a~~I~~~l~~~~~~-~~~~~ 419 (522)
||||+||++.+.+.|.++++.+.++++.++ +.|++ +++|||||||+++| ..+++++++.+++.+++++.. ..+++
T Consensus 160 lH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~idiGGG~~~~y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 239 (251)
T PF02784_consen 160 LHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFEDLEFIDIGGGFGVPYDDEYDLEEYAEVIREALKEYFEEGLPGPK 239 (251)
T ss_dssp EEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT-SEEEEESSB-SSSSSSSCHHHHHHHHHHHHHHHHCHTCTTSE
T ss_pred eeeeeccCCcchHHHHHHHHHHHHHHhhhccccccccccEEEeeCCCCCCCcccccchhHHHHHHHHHHHHHhccCCCCE
Confidence 999999999999999999999999998776 89988 99999999999988 578999999999999998763 36899
Q ss_pred EEecCcceeecc
Q psy9378 420 IIAEPGRYYVAS 431 (522)
Q Consensus 420 li~EPGR~lva~ 431 (522)
|++|||||+|++
T Consensus 240 l~~EpGR~lva~ 251 (251)
T PF02784_consen 240 LIIEPGRYLVAN 251 (251)
T ss_dssp EEEEESHHHHGG
T ss_pred EEEeeCHHHhCC
Confidence 999999999985
No 24
>PLN02439 arginine decarboxylase
Probab=100.00 E-value=2.4e-37 Score=337.40 Aligned_cols=296 Identities=22% Similarity=0.224 Sum_probs=241.7
Q ss_pred EEEeHHHHHHHHHHHHHhCC----------CCeEEeeecCCCcHHHHHHHHHcC----CeEEEEc---------------
Q psy9378 214 YVLDVGEIVRKHEDWKLKLP----------RVDPYYAVKCNDSQMVLEVLAALG----TGFDCAS--------------- 264 (522)
Q Consensus 214 yV~Dl~~I~~ni~~l~~~lp----------~~~i~YAvKAN~~~~Vlk~L~~~G----~GfDvaS--------------- 264 (522)
.+-..+.|++|+++++++|+ +.+++||+|||+++.|++.+.+.| +|+||+|
T Consensus 2 l~rf~d~l~~ri~~L~~aF~~ai~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~ 81 (559)
T PLN02439 2 IVRFPDVLKNRLESLQSAFDYAIQSQGYNSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGS 81 (559)
T ss_pred EeeCHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCC
Confidence 45678999999999999985 468999999999999999999988 7999999
Q ss_pred ----------CCHHHHHHHHH---cCCC-EEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCc-----ccCCCCCccc
Q psy9378 265 ----------KPISHIRYAAE---YGID-TMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEV-----AQCQLGMKFG 321 (522)
Q Consensus 265 ----------K~~~eL~~A~~---~Gv~-~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~-----~~~~~~sKFG 321 (522)
|+.++|+.|+. .|+. .|++||++||++|.+.++ ..+|+|||++.... .++...+|||
T Consensus 82 ~~~ii~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~~~~~~~~~~~tgg~~sKFG 161 (559)
T PLN02439 82 PDAFLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKFG 161 (559)
T ss_pred CCeEEECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEecCCCCCCCccccCCCCCCCC
Confidence 88888998754 3565 489999999999998864 36899999987542 2455679999
Q ss_pred cCcCCCHHHHHHHHhhCC-Ce-EEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC------
Q psy9378 322 CDPISEAPRLLRLAKSLD-LD-VVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT------ 393 (522)
Q Consensus 322 i~~e~e~~~ll~~~k~~~-L~-l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~------ 393 (522)
++.+ ++.++++.+++.+ ++ +.|||||+|||+.+++.|.++++++.+++..+++.|.++++|||||||+++|
T Consensus 162 l~~~-ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~~G~~l~~lDIGGGlgV~Y~g~~~~ 240 (559)
T PLN02439 162 LTAT-EIVRVVRKLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVRLGAPMRVIDIGGGLGIDYDGSKSG 240 (559)
T ss_pred CCHH-HHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEEecCCccccCCCcccc
Confidence 9998 9999999998875 55 9999999999999999999999999999988888999999999999999865
Q ss_pred ------CCCHHHHHHHHHHHHHhhCCC--CCCcEEEecCcceeeccceeEEEEEEEEEeeCCCC----------------
Q psy9378 394 ------GYSMNRIAEIINVALDEYFPV--EEGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN---------------- 449 (522)
Q Consensus 394 ------~~~~~~~a~~I~~~l~~~~~~--~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~---------------- 449 (522)
++++++|++.|...+++++.. .+.++|++|||||+||++|+|+++|+++|......
T Consensus 241 ~~~~s~~ydl~eya~~Vv~~l~~~~~~~g~~~p~Ii~EpGR~lVA~agvLvt~V~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (559)
T PLN02439 241 SSDMSVAYSLEEYANAVVAAVRDVCDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKRGVPAADDDDQYLLLGLTEEL 320 (559)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcchhhcceEEEEEEEEeecCCCCCCCccccHHHHHHHHHH
Confidence 247999999999999988743 24689999999999999999999999998410000
Q ss_pred C---------------------------------------------------------C-CCceEEEEEcCCCcCcchhh
Q psy9378 450 S---------------------------------------------------------S-VPTHTMYYINDGVYGSFNCI 471 (522)
Q Consensus 450 ~---------------------------------------------------------g-~~~~~~~~vd~G~~~~~~~~ 471 (522)
. + .....+|++|-+++.|+...
T Consensus 321 ~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~y~~NfS~fqslPD~ 400 (559)
T PLN02439 321 RADYENLYAAADRGDYEECLLYADQLKQECVRLFKEGLLSLEQRAAVDGLCELVSKRVGASDPVATYHINLSVFTSIPDF 400 (559)
T ss_pred HhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCChheEEEEeeehhccCccc
Confidence 0 0 12345999999999997665
Q ss_pred hcccCccccccCCCCCCCCcceEEeeecCCCCCccccccC
Q psy9378 472 IYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLSLF 511 (522)
Q Consensus 472 l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~~~ 511 (522)
|=-. ...|++--.+-++.+..+.+|..=||.|.+++..+
T Consensus 401 Wai~-Q~Fpi~Pl~rl~e~p~~~~~l~diTCDsDg~i~~~ 439 (559)
T PLN02439 401 WAIG-QLFPIVPLHRLDERPTVRGILSDLTCDSDGKIDKF 439 (559)
T ss_pred eeeC-ceeeeeeccccCCCcceeEEEeccccCCCCchhcc
Confidence 4322 34565533444555778899999999999986553
No 25
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=99.92 E-value=1e-24 Score=229.34 Aligned_cols=264 Identities=20% Similarity=0.217 Sum_probs=223.6
Q ss_pred CcceEEecCCCCCCCccccCCccccC--CCCCeEEEEeHHHHHHHHHHHHHhCC----------CCeEEeeecCCCcHHH
Q psy9378 182 PKSLMVYPRTDDMTQVPVYNYPDNVG--MKEDAFYVLDVGEIVRKHEDWKLKLP----------RVDPYYAVKCNDSQMV 249 (522)
Q Consensus 182 ~~~~~~~~~~~~~~g~~l~~l~~~~~--~~~tP~yV~Dl~~I~~ni~~l~~~lp----------~~~i~YAvKAN~~~~V 249 (522)
-++..|-|....-+.++|.+|.+..+ .++.|+++-.++.|.++++.+..+|. +.+..|.+|+|..+.|
T Consensus 49 ~G~v~V~P~~~~~~~~dL~elV~~l~~~g~~LPlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~v 128 (652)
T COG1166 49 AGHVTVCPDPDPGARVDLAELVKALRDRGLRLPLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRV 128 (652)
T ss_pred CccEEEecCCCccccccHHHHHHHHHhcCCCCceEEechHHHHHHHHHHHHHHHHHHHHhCCCCceeEEEEeeecchHHH
Confidence 37788888887766688888877654 46799999999999999999998883 4688999999999999
Q ss_pred HHHHHHcC----CeEEEEc-----------------------CCHHHHHHHH---HcCCC-EEEEcCHHHHHHHhhhC--
Q psy9378 250 LEVLAALG----TGFDCAS-----------------------KPISHIRYAA---EYGID-TMTFDNEIELQKVKQFH-- 296 (522)
Q Consensus 250 lk~L~~~G----~GfDvaS-----------------------K~~~eL~~A~---~~Gv~-~i~vDS~~EL~~i~~~~-- 296 (522)
++.|.+.| .|+++.| |..+.|+.|+ +.|-+ .++++-++||+.+.+.+
T Consensus 129 Ve~Lv~~g~~~~~GLEAGSK~ELm~vLA~~~~~~~~IvCNGyKDrEyI~lAlig~kLGh~v~ivIEklsEl~~VleeA~~ 208 (652)
T COG1166 129 VESLVASGKGYPLGLEAGSKAELMAVLAHAGNPGSLIVCNGYKDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQ 208 (652)
T ss_pred HHHHHhccCCCCCcccCCCHHHHHHHHHhcCCCCCeEEecCcccHHHHHHHHHHHHhCCceEEEEechHHHHHHHHHHHH
Confidence 99999884 6999999 8888888885 44433 58999999999998875
Q ss_pred --CCCeEEEEEeeCCCc-----ccCCCCCccccCcCCCHHHHHHHHhhCCC--eEEEEEEecCCCCCChHHHHHHHHHHH
Q psy9378 297 --PTAQLVIRIRCDAEV-----AQCQLGMKFGCDPISEAPRLLRLAKSLDL--DVVGVSFHVGSGCGDPPVFGRAIYSAR 367 (522)
Q Consensus 297 --~~~~V~LRIn~~~~~-----~~~~~~sKFGi~~e~e~~~ll~~~k~~~L--~l~GlhfH~GS~~~~~~~~~~ai~~~~ 367 (522)
.+.++++|+.....+ ..++..+|||++.. |+.++++++++.++ .+.-+|||+|||+.+......+++.+.
T Consensus 209 lgvkP~lGvR~RL~sqGsGkW~~SgG~ksKFGLsa~-qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~ 287 (652)
T COG1166 209 LGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLSAT-QVLQVVERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAA 287 (652)
T ss_pred cCCCCcceeEEEEecccccccccccCchhccCCCHH-HHHHHHHHHHhcchHHhhHHHhhhhcchhhhhHHHHHHHHHHH
Confidence 356889998865321 23445699999997 99999999988654 477899999999999999999999999
Q ss_pred HHHHHHhhcCCCccEEEEcCCCCCCC-----------CCCHHHHHHHHHHHHHhhCCC--CCCcEEEecCcceeecccee
Q psy9378 368 QIFDLGNSLGFSMRVLDLGGGYPGYT-----------GYSMNRIAEIINVALDEYFPV--EEGVSIIAEPGRYYVASAFT 434 (522)
Q Consensus 368 ~l~~~~~~~G~~l~~LdIGGGf~~~~-----------~~~~~~~a~~I~~~l~~~~~~--~~~~~li~EPGR~lva~ag~ 434 (522)
+++-.++++|.+++++|+|||++++| ++++++||+.|.-.+++.|.. .+.|+|++|.||+++|...+
T Consensus 288 r~YvEL~klGa~i~~~dVGGGLgVDYdGt~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p~P~IisESGRaitAHhaV 367 (652)
T COG1166 288 RFYVELRKLGANIKYFDVGGGLGVDYDGTRTQSDCSKNYGLNEYANDVVWALKDACEEKGLPHPTIISESGRAITAHHAV 367 (652)
T ss_pred HHHHHHHHcCCCceEEeccCceeecccCccccccccccCCHHHHHHHHHHHHHHHHHhcCCCCCeEEeecchhhhhcceE
Confidence 99988999999999999999999986 356999999999889887753 26899999999999999999
Q ss_pred EEEEEEEEEeeC
Q psy9378 435 LATLIHSKRDIL 446 (522)
Q Consensus 435 Lvt~V~~~K~~~ 446 (522)
|++.|+++....
T Consensus 368 LI~~Vi~v~~~~ 379 (652)
T COG1166 368 LIANVIGVERHE 379 (652)
T ss_pred EEeeecccccCC
Confidence 999999987653
No 26
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.92 E-value=1.1e-23 Score=203.22 Aligned_cols=166 Identities=34% Similarity=0.459 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhCC-CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-----------------------CCHHHHHHHHHc
Q psy9378 221 IVRKHEDWKLKLP-RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-----------------------KPISHIRYAAEY 276 (522)
Q Consensus 221 I~~ni~~l~~~lp-~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-----------------------K~~~eL~~A~~~ 276 (522)
|++|++.+++.++ +++++|++|||+++.+++++.+.+.||+|+| +++++++.+++.
T Consensus 1 l~~N~~~i~~~~~~~~~i~~~vKan~~~~i~~~~~~~~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~~~~~ 80 (211)
T cd06808 1 IRHNYRRLREAAPAGITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAEQ 80 (211)
T ss_pred ChHHHHHHHHhCCCCCEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHHc
Confidence 5799999999998 8999999999999999999999999999999 678999999999
Q ss_pred CCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhC-CCeEEEEEEecCC
Q psy9378 277 GIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSL-DLDVVGVSFHVGS 351 (522)
Q Consensus 277 Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS 351 (522)
|...+++||+++|+.+.+.+ +..+|+|||+++. ..+|||++++ ++.++++.+++. ++++.|+|+|+|+
T Consensus 81 ~~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g~------~~~R~G~~~~-e~~~~~~~i~~~~~l~l~Gl~~H~~~ 153 (211)
T cd06808 81 GVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGD------ENGKFGVRPE-ELKALLERAKELPHLRLVGLHTHFGS 153 (211)
T ss_pred CCCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcCCC------CCCCCCCCHH-HHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 55469999999999998765 5689999999863 2499999997 999999988775 7999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC
Q psy9378 352 GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT 393 (522)
Q Consensus 352 ~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~ 393 (522)
+..+.+.+.++++++.++++.+++.|+++.+||+|||++..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Ggg~~~~~ 195 (211)
T cd06808 154 ADEDYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILY 195 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCcCc
Confidence 987778889999999999988888899999999999998765
No 27
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.91 E-value=6.1e-24 Score=222.40 Aligned_cols=241 Identities=15% Similarity=0.107 Sum_probs=178.8
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
++++||+++||+++|++|++++++.++ +++++|++|+|+++.|++.+.+.|+ ||+|+|
T Consensus 3 ~~~~tP~~~id~~~l~~N~~~l~~~~~~~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ili~~ 82 (358)
T cd06819 3 AEIDTPALVLDLDALERNIKRMAAFAKAHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIRDILITN 82 (358)
T ss_pred cccCCceEEEEHHHHHHHHHHHHHHHHHcCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCCeEEEEC
Confidence 357899999999999999999999886 6889999999999999999999996 999999
Q ss_pred ------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccC-cCCCHHHHHH
Q psy9378 265 ------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCD-PISEAPRLLR 333 (522)
Q Consensus 265 ------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~-~e~e~~~ll~ 333 (522)
|..+.++.+.+.++ .+++||++++++|.+.++ ..+|+|||+++. +|||+. .+ ++.++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~i-~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~G~--------~R~Gv~~~~-~~~~l~~ 152 (358)
T cd06819 83 EVVGPAKIARLAALARRAPL-IVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVGQ--------GRCGVPPGE-AALALAR 152 (358)
T ss_pred CcCCHHHHHHHHHHhcCCCE-EEEECCHHHHHHHHHHHHhcCCceEEEEEECCCC--------CcCCCCChH-HHHHHHH
Confidence 23445566777787 599999999999988753 368999998763 789998 45 7889998
Q ss_pred HHhh-CCCeEEEEEEecCCCC------CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 334 LAKS-LDLDVVGVSFHVGSGC------GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 334 ~~k~-~~L~l~GlhfH~GS~~------~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
.+++ .++++.|||+|.|+.. .+.+.+.++++.+.++++.+++.|+++.+++ |||++..+...-..-...++.
T Consensus 153 ~i~~~~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs-gGgs~~~~~~~~~~~~~elr~ 231 (358)
T cd06819 153 TIAALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGLPCEIVT-GGGTGTYEFEAASGVYTELQA 231 (358)
T ss_pred HHHhCCCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEe-cCCCcChhhhccCCcceEEcc
Confidence 8876 5999999999998854 2334556777777778887888899999996 999976431000000011111
Q ss_pred HHHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcch
Q psy9378 407 ALDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFN 469 (522)
Q Consensus 407 ~l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~ 469 (522)
.-.-+.+ ........|||+.+..+|.+++++|+++. ..+ .+++|.|......
T Consensus 232 G~~i~~d-~~~~~~~~~~~~~~~~~A~~v~a~Vis~~-~~~---------~~~ld~G~~~~~~ 283 (358)
T cd06819 232 GSYVFMD-ADYGDNEDEGGAPPFENALFVLTTVISAN-APG---------RAVVDAGLKSLSV 283 (358)
T ss_pred CceEEec-HHHHhcCCccCCCccceeeEEEEEEeeec-cCC---------eEEECCccccccc
Confidence 0000000 00011223899999999999999999943 222 3889999866543
No 28
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.90 E-value=7.8e-22 Score=207.24 Aligned_cols=273 Identities=14% Similarity=0.103 Sum_probs=196.5
Q ss_pred eEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC----cHHHHHHHHHcCC-eEEEEc---------------------
Q psy9378 212 AFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND----SQMVLEVLAALGT-GFDCAS--------------------- 264 (522)
Q Consensus 212 P~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~----~~~Vlk~L~~~G~-GfDvaS--------------------- 264 (522)
...++|+++|++|++.+++.++ +++++|++|||+ ++.|++.+.+.|+ +|+|+|
T Consensus 2 ~~l~Id~~~i~~N~~~l~~~~~~~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~~i~~~~~ 81 (367)
T cd00430 2 TWAEIDLDALRHNLRVIRRLLGPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPILVLGG 81 (367)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCEEEEeC
Confidence 4678999999999999999997 789999999998 6999999999996 999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CC
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LD 339 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~ 339 (522)
-..++++.++++++ .+++||+++|++|.+.+ ...+|+|||+++ .+|||++++ ++.++++.+++ .+
T Consensus 82 ~~~~~~~~~~~~~i-~~~vds~~~l~~l~~~a~~~~~~~~v~l~vdtG--------~~R~G~~~~-e~~~~~~~i~~~~~ 151 (367)
T cd00430 82 TPPEEAEEAIEYDL-TPTVSSLEQAEALSAAAARLGKTLKVHLKIDTG--------MGRLGFRPE-EAEELLEALKALPG 151 (367)
T ss_pred CCHHHHHHHHHcCC-EEEECCHHHHHHHHHHHHHcCCceEEEEEEcCC--------CCCCCCCHH-HHHHHHHHHHhCCC
Confidence 34689999999999 59999999999998875 346899999875 389999998 99999998877 59
Q ss_pred CeEEEEEEecCCCCCC-hHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCc
Q psy9378 340 LDVVGVSFHVGSGCGD-PPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGV 418 (522)
Q Consensus 340 L~l~GlhfH~GS~~~~-~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~ 418 (522)
+++.|||+|+|++... .+.+.++++++.++.+.+++.|++++++++||+.+..+..+. -.+.++....-| ...+..
T Consensus 152 l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~~~~~v~~g~s~~~~~~~~~--~~d~vR~G~~ly-G~~~~~ 228 (367)
T cd00430 152 LELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRFPEA--HFDMVRPGIALY-GLYPSP 228 (367)
T ss_pred ceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCcEEccCCHHHhCCccc--cCCeEeeCeEEE-CcCCCc
Confidence 9999999999998765 467778888888888877777888999999999865432211 011111111101 000000
Q ss_pred EEEecCcceeeccceeEEEEEEEEEeeCCCC-CCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEee
Q psy9378 419 SIIAEPGRYYVASAFTLATLIHSKRDILGAN-SSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPL 497 (522)
Q Consensus 419 ~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~-~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l 497 (522)
. .+......+++++.++|+.+|...... .|-. ..| ..+.++.....+.-|....+.-.. +...-.-...+.++
T Consensus 229 ~---~~~~~~l~~a~~l~a~Vi~vk~~~~G~~vgyg-~~~-~~~~~~~~a~~~~Gy~dg~~~~~~-~~~~v~i~~~~~~i 302 (367)
T cd00430 229 E---VKSPLGLKPVMSLKARVVQVKTVPAGEGVSYG-RTY-TAPRPTRIATLPVGYADGYPRALS-NKGEVLIRGKRAPI 302 (367)
T ss_pred c---cccccCCceeeEEEEEEEEEEEcCCCCcCCCC-CeE-EcCCCcEEEEEeeccccCcCcccC-CCcEEEECCEEcce
Confidence 0 011234679999999999999865311 1100 233 377777777667666654322111 11100003477889
Q ss_pred ecCCCC
Q psy9378 498 FLQESF 503 (522)
Q Consensus 498 ~Gp~C~ 503 (522)
.|+.|+
T Consensus 303 vG~v~m 308 (367)
T cd00430 303 VGRVCM 308 (367)
T ss_pred eceeec
Confidence 999883
No 29
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.89 E-value=8.2e-22 Score=207.58 Aligned_cols=176 Identities=22% Similarity=0.293 Sum_probs=140.1
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
.+++||+++||+++|++|++++++.++ +++++|++|||+++.+++.+.+.|+ ||+|+|
T Consensus 2 ~~~~tP~~vid~~~l~~Ni~~~~~~~~~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~~il~~~ 81 (374)
T cd06812 2 AALDTPFLLLDEARMDRNIARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYRDILYAV 81 (374)
T ss_pred CCCCCceEEEeHHHHHHHHHHHHHHHHHcCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCeeEEeC
Confidence 457899999999999999999999986 6899999999999999999999995 899998
Q ss_pred -CCHHHHHHHHH---cCCC-EEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCC-HHHHHHH
Q psy9378 265 -KPISHIRYAAE---YGID-TMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISE-APRLLRL 334 (522)
Q Consensus 265 -K~~~eL~~A~~---~Gv~-~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e-~~~ll~~ 334 (522)
+.+.+++.+.+ .++. .++|||.++|+.|.+.+ ...+|+|||+++ .+|||+.++.+ +.++++.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~G--------~~R~Gv~~~~~~~~~l~~~ 153 (374)
T cd06812 82 GIAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCD--------GHRGGIAPDSDALLEIARI 153 (374)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCCceEEEEEeCCC--------CCcCCCCCCcHHHHHHHHH
Confidence 45555555444 4543 48999999999998875 346899999775 38899988512 5666666
Q ss_pred HhhCCCeEEEEEEecCCC--CCChHHHHHH----HHHHHHHHHHHhhcCCCccEEEEcCCCC
Q psy9378 335 AKSLDLDVVGVSFHVGSG--CGDPPVFGRA----IYSARQIFDLGNSLGFSMRVLDLGGGYP 390 (522)
Q Consensus 335 ~k~~~L~l~GlhfH~GS~--~~~~~~~~~a----i~~~~~l~~~~~~~G~~l~~LdIGGGf~ 390 (522)
++..++++.|+|+|.|++ +.+.+.+.+. ++.+.++.+.+++.|+++.++|+||...
T Consensus 154 i~~~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~v~~Ggt~~ 215 (374)
T cd06812 154 LHDGGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGLPCPVVSVGSTPT 215 (374)
T ss_pred HhcCCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEeecCChh
Confidence 655689999999999996 4566655443 3346677777777899999999998764
No 30
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.85 E-value=1.5e-20 Score=198.71 Aligned_cols=241 Identities=15% Similarity=0.105 Sum_probs=171.6
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc----------------------
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS---------------------- 264 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS---------------------- 264 (522)
+||+++||+++|++|++++++.+. +++++|++|+|.++.+++.+.+.|+ ||+|+|
T Consensus 2 ~tP~l~idl~~l~~N~~~m~~~~~~~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~~il~~~~~~ 81 (382)
T cd06818 2 SLPLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVRRVLLANQLV 81 (382)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHHhhcCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCCeEEEecCcC
Confidence 699999999999999999999884 5899999999999999999999997 999999
Q ss_pred -CC-HHHHHHHHHc--CCC-EEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHH
Q psy9378 265 -KP-ISHIRYAAEY--GID-TMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLA 335 (522)
Q Consensus 265 -K~-~~eL~~A~~~--Gv~-~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~ 335 (522)
++ .+++..+++. +.. .+++||+++++.|.+.+ +..+|+|+||++ ..|.|+.+.+++.++++.+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~g--------~~R~G~~~~~~~~~l~~~i 153 (382)
T cd06818 82 GKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP--------GGRTGVRTEAEALALADAI 153 (382)
T ss_pred ChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCC--------CCCCCCCCHHHHHHHHHHH
Confidence 22 2347777753 443 48999999999998875 246889999875 3789997532688888887
Q ss_pred hh-CCCeEEEEEEecCCCC-----CChHHHHHHHHHHHHHHHHHhhcCC-CccE-EEEcCCCCCCCCCCHHHHHHHHHHH
Q psy9378 336 KS-LDLDVVGVSFHVGSGC-----GDPPVFGRAIYSARQIFDLGNSLGF-SMRV-LDLGGGYPGYTGYSMNRIAEIINVA 407 (522)
Q Consensus 336 k~-~~L~l~GlhfH~GS~~-----~~~~~~~~ai~~~~~l~~~~~~~G~-~l~~-LdIGGGf~~~~~~~~~~~a~~I~~~ 407 (522)
++ .++++.|||+|.|++. .+.+...+..+.+.++.+.+++.+. .++. ++.|||-+ +++.. .+.
T Consensus 154 ~~~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ilSgGgT~-----~~~~~----~~~ 224 (382)
T cd06818 154 AASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSA-----WFDLV----AEA 224 (382)
T ss_pred HcCCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCCH-----hHHHH----HHh
Confidence 66 5999999999999962 3344555556666777776666553 3333 55566632 22222 222
Q ss_pred HHhhCCCCCCcEEEecCcceeeccceeEEEEEEEEEeeCC---C--C----------CCCCceEEEEEcCCCcCcc
Q psy9378 408 LDEYFPVEEGVSIIAEPGRYYVASAFTLATLIHSKRDILG---A--N----------SSVPTHTMYYINDGVYGSF 468 (522)
Q Consensus 408 l~~~~~~~~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~---~--~----------~g~~~~~~~~vd~G~~~~~ 468 (522)
+..... ..++++.+|||||++.++|.+++.|.++|.... . . .+......+.+|+|.-..-
T Consensus 225 ~~~~~~-~~~~~~el~pG~y~~~D~g~~~~~~~~~k~~~~~~~~~~~~~al~vl~~ViS~p~~~~~~~daG~k~l~ 299 (382)
T cd06818 225 LAALAL-DGPVTLVLRSGCYVTHDHGIYRRAQQALRARDPLSLAGALRPALEIWAYVQSRPEPGLAILGMGKRDVA 299 (382)
T ss_pred hccccc-CCceeEEEecCeeEEecHHHHhhhhhhhhccCccccCcccccceEEEEEEecccCCCeEEECCcCCcCc
Confidence 222111 135688999999999999887777766665321 0 0 1111234689999975543
No 31
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.83 E-value=3.6e-19 Score=186.18 Aligned_cols=172 Identities=13% Similarity=0.113 Sum_probs=141.2
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc---------------------C
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS---------------------K 265 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS---------------------K 265 (522)
+||++++|+++|++|++++++.++ +++++|++|+|+++.+++.+.+.|+ ||+|+| .
T Consensus 2 ~tP~l~id~~~l~~Ni~~~~~~~~~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~i~i~~~~~ 81 (353)
T cd06820 2 DTPALLIDLDRLERNIARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLSDIFIAYPIV 81 (353)
T ss_pred CCceEEEeHHHHHHHHHHHHHHHHHcCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCCeEEEECCcC
Confidence 699999999999999999999885 5899999999999999999999997 999999 1
Q ss_pred CH---HHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccCc-CCCHHHHHHHHhh
Q psy9378 266 PI---SHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDP-ISEAPRLLRLAKS 337 (522)
Q Consensus 266 ~~---~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~-e~e~~~ll~~~k~ 337 (522)
.. +++..+.+..-..+++||+++++.|.+.++ ..+|+||||++ .+|||+.+ + ++.++++.+++
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~vds~~~l~~L~~~a~~~~~~~~V~l~vd~G--------~~R~Gv~~~~-~~~~l~~~i~~ 152 (353)
T cd06820 82 GRQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG--------MNRCGVQTPE-DAVALARAIAS 152 (353)
T ss_pred CHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCeeEEEEEECCC--------CCcCCCCChH-HHHHHHHHHHh
Confidence 12 234444433322589999999999998753 46899999986 38999998 7 88899988875
Q ss_pred -CCCeEEEEEEecCCCCCC---hHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC
Q psy9378 338 -LDLDVVGVSFHVGSGCGD---PPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP 390 (522)
Q Consensus 338 -~~L~l~GlhfH~GS~~~~---~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~ 390 (522)
.+|++.|+|+|.|+.... ...+.+.++.+.++++.+++.|+.+.++++||+..
T Consensus 153 ~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~Ggs~t 209 (353)
T cd06820 153 APGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEEAGLEPPVVSGGSTPT 209 (353)
T ss_pred CCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCcChh
Confidence 699999999999997532 23566677778888888888899999999999863
No 32
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.82 E-value=6.8e-19 Score=184.61 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=140.2
Q ss_pred cCCCCCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc-------------------
Q psy9378 206 VGMKEDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------------------- 264 (522)
Q Consensus 206 ~~~~~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------------------- 264 (522)
.++++||+++||+++|++|++++++.++ +.++++++|||+++.+++.+.+.|+ ||+|+|
T Consensus 4 ~~~~~tP~~~id~~~l~~Ni~~~~~~~~~~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ill~~ 83 (361)
T cd06821 4 TDEIISPALAVYPDRIEENIRRMIRMAGDPQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAPDVLLAY 83 (361)
T ss_pred cccCCCceEEEeHHHHHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCCeEEEeC
Confidence 3667899999999999999999999886 5689999999999999999999997 999999
Q ss_pred -----CCHHHHHHHHHcC-C-CEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHH
Q psy9378 265 -----KPISHIRYAAEYG-I-DTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLR 333 (522)
Q Consensus 265 -----K~~~eL~~A~~~G-v-~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~ 333 (522)
+..+.++.+.+.. . ..+++||+++++.+.+.+. ..+|+||||++. +|||+.+++++.++++
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~Vds~~~l~~l~~~a~~~~~~~~V~l~Vd~G~--------~R~Gv~~~~~~~~l~~ 155 (361)
T cd06821 84 PLVGPNIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTGM--------NRTGIAPGEDAEELYR 155 (361)
T ss_pred CCCHHHHHHHHHHHhhCCCCeEEEEECCHHHHHHHHHHHHHcCCeEEEEEEeCCCC--------CcCCCCChHHHHHHHH
Confidence 1112334444321 1 1479999999999998753 368899998863 7999988525888888
Q ss_pred HHhh-CCCeEEEEEEecCCCC-CC----hHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCC
Q psy9378 334 LAKS-LDLDVVGVSFHVGSGC-GD----PPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG 388 (522)
Q Consensus 334 ~~k~-~~L~l~GlhfH~GS~~-~~----~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGG 388 (522)
.+++ .+|++.|||+|.|+.. .+ .+.+.++++.+.++++.+++.|+.+.++++||.
T Consensus 156 ~i~~~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~v~~GgS 216 (361)
T cd06821 156 AIATLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGLPVPELVAGGT 216 (361)
T ss_pred HHhhCCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Confidence 8866 6999999999999853 23 345667788888888888888888999999875
No 33
>KOG0622|consensus
Probab=99.79 E-value=6.6e-20 Score=188.25 Aligned_cols=76 Identities=50% Similarity=1.000 Sum_probs=72.2
Q ss_pred CCCcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhhcC
Q psy9378 4 RETLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDRLP 79 (522)
Q Consensus 4 ~~~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~~~ 79 (522)
+++.+.++|||||||++|++.+++.||+|.+||||+|++|||||++++|+||||++|+++|++++..|+.+|+...
T Consensus 362 ~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~~~y~~s~~~~e~~r~~~~ 437 (448)
T KOG0622|consen 362 EEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPKIYYVMSDGDWEKIRDAET 437 (448)
T ss_pred ccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCccccccccccCCCCCCceEEEeccccHHHhhcccC
Confidence 3348899999999999999999999999999999999999999999999999999999999999999999999854
No 34
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.79 E-value=2.3e-17 Score=174.51 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=163.4
Q ss_pred CCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCC-CcHHHHHHHHHcCC-eEEEEc------------------
Q psy9378 207 GMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCN-DSQMVLEVLAALGT-GFDCAS------------------ 264 (522)
Q Consensus 207 ~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN-~~~~Vlk~L~~~G~-GfDvaS------------------ 264 (522)
.....++|+||+++|++|++.+++.++ +.+++|++||| .++.+++.+.+.|+ ||+|+|
T Consensus 24 g~~~~~~yvIDl~~I~~N~~~l~~~~~~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~Ea~~lr~aGi~~~~I~ 103 (382)
T cd06811 24 GAIPPDTYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVG 103 (382)
T ss_pred CCCCCCEEEecHHHHHHHHHHHHHHHhhCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHHHHHHHHcCCCHHhEE
Confidence 345688999999999999999999986 68999999999 69999999999998 999999
Q ss_pred ----CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHh
Q psy9378 265 ----KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAK 336 (522)
Q Consensus 265 ----K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k 336 (522)
++.++++.+++.++..+++||+++++.|.+.+ +..+|+||||++.+. ...+++.|++++ ++.++++.++
T Consensus 104 ~l~~~~~~el~~~v~~~~~~i~V~s~~~l~~L~~~A~~~g~~~~V~LrVdtg~~r--i~~g~~~G~~~~-e~~~~~~~i~ 180 (382)
T cd06811 104 HLVQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVYGDEDT--LYPGQEGGFPLE-ELPAVLAAIK 180 (382)
T ss_pred EccCCCHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEECCCCc--cccCccceecHH-HHHHHHHHHH
Confidence 44789999999997569999999999998765 346899999986431 122456699887 8999999887
Q ss_pred h-CCCeEEEEEEecCCCCCChH----HHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhh
Q psy9378 337 S-LDLDVVGVSFHVGSGCGDPP----VFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEY 411 (522)
Q Consensus 337 ~-~~L~l~GlhfH~GS~~~~~~----~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~ 411 (522)
+ .++++.|+|.| ++...+.+ .+.+.++.+.++.+.+++.|+++++||+||.=.. ..+.. +.+.
T Consensus 181 ~l~~l~l~Githf-~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~is~Gga~ss---~~l~~--------~~~~ 248 (382)
T cd06811 181 ALPGIRIAGLTSF-PCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSATSC---ATLPL--------LAEY 248 (382)
T ss_pred cCCCcEEEeEccc-chhhcccCcccccHHHHHHHHHHHHHHHHHCCCCCeEEccCCCcch---hhHHH--------HHhC
Confidence 7 59999999555 55322221 3555677777777888888889999998863211 11111 1111
Q ss_pred CCCCCCcEEEecCcceee-------------ccceeEEEEEEEEEe
Q psy9378 412 FPVEEGVSIIAEPGRYYV-------------ASAFTLATLIHSKRD 444 (522)
Q Consensus 412 ~~~~~~~~li~EPGR~lv-------------a~ag~Lvt~V~~~K~ 444 (522)
+.+ .++||-++. .++++++++|..+|.
T Consensus 249 -----~~t-~vRpG~~LyG~~p~~~~~~~~lkpam~l~s~Is~~~~ 288 (382)
T cd06811 249 -----GVT-HGEPGHALTGTTPLHAVGDQPEKPAMVYVSEVSHTFG 288 (382)
T ss_pred -----CCc-EEeccEEEecCcchhhccccCCcccEEEEEEEEEecC
Confidence 111 456665554 356788899988876
No 35
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.79 E-value=3.3e-18 Score=181.37 Aligned_cols=181 Identities=16% Similarity=0.136 Sum_probs=135.3
Q ss_pred cCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHH-cCC-eEEEEc-------------------
Q psy9378 206 VGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAA-LGT-GFDCAS------------------- 264 (522)
Q Consensus 206 ~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~-~G~-GfDvaS------------------- 264 (522)
+++++||+++||+++|++|++.+++.+++.+++|++||++++.+++.+.+ .|+ ||.|+|
T Consensus 6 ~~~~~tP~~viDldal~~N~~~l~~~~~~~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~~~ILl~~ 85 (388)
T cd06813 6 FAGLDAPFAFVDLDALDANAADLVRRAGGKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGFDDILVAY 85 (388)
T ss_pred hccCCCCEEEEEHHHHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCCCeEEEeC
Confidence 36789999999999999999999999988899999999999999997777 587 999999
Q ss_pred --CCHHHHHHHHHc-----CCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcc---cCCCCCccccCcCCCHHH
Q psy9378 265 --KPISHIRYAAEY-----GIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVA---QCQLGMKFGCDPISEAPR 330 (522)
Q Consensus 265 --K~~~eL~~A~~~-----Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~---~~~~~sKFGi~~e~e~~~ 330 (522)
+.+++++.+.+. .+ .++|||.++|+.|.+.+ ...+|.||||+++.-. .+...++|+ +++ ++.+
T Consensus 86 p~~~~~~l~~~~~~~~~~~~i-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDtGm~R~G~~~G~~Rs~~~-~~~-~~~~ 162 (388)
T cd06813 86 PSVDRAALRELAADPKLGATI-TLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRFGGLHFGVRRSPLH-TPA-QALA 162 (388)
T ss_pred CCCCHHHHHHHHhhhccCCeE-EEEEcCHHHHHHHHHHHHhcCCceEEEEEECCCccccccccCcCCCCCC-CHH-HHHH
Confidence 577888888875 45 48999999999998765 2468999999876421 111123333 255 7888
Q ss_pred HHHHHhh-CCCeEEEEEEecCC-C-CCCh----------------HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC
Q psy9378 331 LLRLAKS-LDLDVVGVSFHVGS-G-CGDP----------------PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP 390 (522)
Q Consensus 331 ll~~~k~-~~L~l~GlhfH~GS-~-~~~~----------------~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~ 390 (522)
+++.+++ .++++.|||+|.|+ + ..+. ..+.+..+...++++.+++.|+++.++| |||.+
T Consensus 163 l~~~i~~~~~l~l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~g~~~~~vN-sgGt~ 240 (388)
T cd06813 163 LAKAIAARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAEGEDLEFVN-GGGTG 240 (388)
T ss_pred HHHHHhcCCCcEEEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEe-CCCch
Confidence 8888765 58999999999876 2 1111 1111111223355666777888889999 77764
No 36
>PRK00053 alr alanine racemase; Reviewed
Probab=99.76 E-value=9.1e-17 Score=168.87 Aligned_cols=241 Identities=14% Similarity=0.147 Sum_probs=171.6
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC----cHHHHHHHHHcCC-eEEEEc--------------------
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND----SQMVLEVLAALGT-GFDCAS-------------------- 264 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~----~~~Vlk~L~~~G~-GfDvaS-------------------- 264 (522)
.+..++|+++|++|++.+++.++ +++++|++|||+ ++.|++++.+.|+ +|+|+|
T Consensus 3 ~~~l~Idl~~l~~N~~~i~~~~~~~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~~~il~l~ 82 (363)
T PRK00053 3 PATAEIDLDALRHNLRQIRKHAPPKSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITAPILILG 82 (363)
T ss_pred CeEEEEeHHHHHHHHHHHHHhCCCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCEEEEe
Confidence 47899999999999999999997 589999999987 7899999999996 999999
Q ss_pred --CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhh--CCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CC
Q psy9378 265 --KPISHIRYAAEYGIDTMTFDNEIELQKVKQF--HPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LD 339 (522)
Q Consensus 265 --K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~--~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~ 339 (522)
...++++.+++.++ .+++||+++++.|.+. .+..+|+|||+++. +|||++++ ++.++++.+++ .+
T Consensus 83 ~~~~~~e~~~~~~~~i-~~~v~s~~~l~~l~~~~~~~~~~V~l~vdtG~--------~R~Gi~~~-e~~~~~~~i~~~~~ 152 (363)
T PRK00053 83 GFFPAEDLPLIIAYNL-TTAVHSLEQLEALEKAELGKPLKVHLKIDTGM--------HRLGVRPE-EAEAALERLLACPN 152 (363)
T ss_pred CCCCHHHHHHHHHcCC-EEEECCHHHHHHHHHhccCCCeEEEEEecCCC--------CcCCCCHH-HHHHHHHHHHhCCC
Confidence 45678999999999 5999999999999875 22468999999763 89999997 89999988876 59
Q ss_pred CeEEEEEEecCCCC-CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCc
Q psy9378 340 LDVVGVSFHVGSGC-GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGV 418 (522)
Q Consensus 340 L~l~GlhfH~GS~~-~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~ 418 (522)
+++.|+|+|+++.. .+.+...++++++.++.+.+++.|+ .++++|+--+....++. -.+.++..+.-| . ..+
T Consensus 153 l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~--~~~h~~nS~~~~~~~~~--~~d~vRpG~~ly-G--~~p 225 (363)
T PRK00053 153 VRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPGKGK--PLRHLANSAAILRWPDL--HFDWVRPGIALY-G--LSP 225 (363)
T ss_pred CceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhcCC--ceEeccCCHHHhCCCcc--cCceEccCeeee-C--CCC
Confidence 99999999999965 3445567788888888877766666 46776553321110100 011222222111 0 000
Q ss_pred EEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcc
Q psy9378 419 SIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSF 468 (522)
Q Consensus 419 ~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~ 468 (522)
.--......-..++..+.++|+.+|...... .+ ....+...++-|-.+.+
T Consensus 226 ~~~~~~~~~~l~pa~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGy~DG~ 283 (363)
T PRK00053 226 SGEPLGLDFGLKPAMTLKSSLIAVRELKAGEGVGYGGTFTAERDTRIAVVPIGYADGY 283 (363)
T ss_pred CccccccccCCeeeEEEEEEEEEEEEcCCcCccCcCCeEEcCCCcEEEEEEecccccc
Confidence 0000000123678999999999999875321 10 11246777787766554
No 37
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=99.75 E-value=3.6e-17 Score=172.12 Aligned_cols=242 Identities=12% Similarity=0.122 Sum_probs=173.0
Q ss_pred eEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC----cHHHHHHHHHcCC-eEEEEc---------------------
Q psy9378 212 AFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND----SQMVLEVLAALGT-GFDCAS--------------------- 264 (522)
Q Consensus 212 P~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~----~~~Vlk~L~~~G~-GfDvaS--------------------- 264 (522)
...++|+++|++|++.+++.++ +.+++|++|||+ ++.+++.+.+.|+ +|+|+|
T Consensus 3 ~~~~Idl~~l~~N~~~i~~~~~~~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~ilvl~~ 82 (367)
T TIGR00492 3 ATVEIDLAALKHNLSAIRNHIGPKSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITAPILLLGG 82 (367)
T ss_pred EEEEEEHHHHHHHHHHHHHhcCCCCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCEEEEeC
Confidence 3588999999999999999987 578999999998 6999999999996 999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CC
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LD 339 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~ 339 (522)
-.+++++.+++.++ .+++||+++++++.+.+. ..+|+||||+++ +|||++++ ++.++++.+++ .+
T Consensus 83 ~~~~~~~~~~~~~l-~~~v~s~~~l~~l~~~a~~~~~~~~V~l~VdtGm--------~R~Gi~~~-e~~~~~~~i~~~~~ 152 (367)
T TIGR00492 83 FFAEDLKILAAWDL-TTTVHSVEQLQALEEALLKEPKRLKVHLKIDTGM--------NRLGVKPD-EAALFVQKLRQLKK 152 (367)
T ss_pred CCHHHHHHHHHcCC-EEEECCHHHHHHHHHHHHHcCCceEEEEEeeCCC--------CCCCCChH-HHHHHHHHHHhCCC
Confidence 34688999999999 599999999999988652 368999999863 99999998 88888887765 58
Q ss_pred Ce-EEEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q psy9378 340 LD-VVGVSFHVGSGCG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEG 417 (522)
Q Consensus 340 L~-l~GlhfH~GS~~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~ 417 (522)
++ +.|+|+|+++... +.+.+.++++++.++++.+++.|++++++++|+--+.....+ .-.+.++..+.-| ...+.
T Consensus 153 l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~~nS~~~~~~~~--~~~d~vR~G~~ly-G~~~~ 229 (367)
T TIGR00492 153 FLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNIEPPFRHIANSAAILNWPE--SHFDMVRPGIILY-GLYPS 229 (367)
T ss_pred CCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCCCcEEccCCHHHhCCcc--ccCCeEccCeEEE-CCCcC
Confidence 99 9999999998753 334677888888888887777788888887654221111000 0011122111000 00000
Q ss_pred cEEEecCc-ceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcc
Q psy9378 418 VSIIAEPG-RYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSF 468 (522)
Q Consensus 418 ~~li~EPG-R~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~ 468 (522)
.. .+.+ ..-..++..+.++|+.+|...... .+ ....+...+.-|-.+.+
T Consensus 230 ~~--~~~~~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~~GYaDG~ 287 (367)
T TIGR00492 230 AD--MSDGAPFGLKPVLSLTSKIIQVRTVKKGEPVSYGGTFTAEEDTRIGVVAIGYADGY 287 (367)
T ss_pred cc--cccccCCCCeeeEEEEEEEEEEEEcCCcCCcCCCCcEEcCCCcEEEEEeeecccCc
Confidence 00 0000 123678999999999999875421 11 11245677777766654
No 38
>PRK13340 alanine racemase; Reviewed
Probab=99.72 E-value=2.4e-15 Score=160.46 Aligned_cols=234 Identities=11% Similarity=0.124 Sum_probs=160.2
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCCC-CeEEeeecCCC----cHHHHHHHHHcCC-eEEEEc--------------------
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLPR-VDPYYAVKCND----SQMVLEVLAALGT-GFDCAS-------------------- 264 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp~-~~i~YAvKAN~----~~~Vlk~L~~~G~-GfDvaS-------------------- 264 (522)
.+...+|+++|++|++.+++.++. .+++|++|||+ ...|++.+.+.|+ +|+|+|
T Consensus 40 ~~~l~Idl~ai~~N~~~i~~~~~~~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~ilvl~ 119 (406)
T PRK13340 40 NAWLEISPGAFRHNIKTLRSLLANKSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQLLRVR 119 (406)
T ss_pred ceEEEEcHHHHHHHHHHHHHhCCCCCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCCEEEEC
Confidence 367889999999999999999974 79999999998 5779999999996 999999
Q ss_pred -CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEee-CCCcccCCCCCccccCcCCCHHHHHH--HHh
Q psy9378 265 -KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRC-DAEVAQCQLGMKFGCDPISEAPRLLR--LAK 336 (522)
Q Consensus 265 -K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~-~~~~~~~~~~sKFGi~~e~e~~~ll~--~~k 336 (522)
-++++++.++++++. +++||+++++.|.+.+ +..+|+||||+ + .+|||+.++ +..++.. .++
T Consensus 120 ~~~~~el~~~~~~~l~-~~v~s~~~l~~l~~~a~~~~~~~~V~LkVDt~G--------m~R~G~~~~-e~~~~~~~~~l~ 189 (406)
T PRK13340 120 SASPAEIEQALRYDLE-ELIGDDEQAKLLAAIAKKNGKPIDIHLALNSGG--------MSRNGLDMS-TARGKWEALRIA 189 (406)
T ss_pred CCCHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEECCCC--------CCCcCCChh-hhhHHHHHHHHH
Confidence 467899999999994 9999999999998764 34689999998 4 489999886 5433332 444
Q ss_pred h-CCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHH-hhcCCCccEEEEcCC--CCCCCCCCHHHHHHHHHHHHHhhC
Q psy9378 337 S-LDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLG-NSLGFSMRVLDLGGG--YPGYTGYSMNRIAEIINVALDEYF 412 (522)
Q Consensus 337 ~-~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~-~~~G~~l~~LdIGGG--f~~~~~~~~~~~a~~I~~~l~~~~ 412 (522)
+ .++++.|+|+|+++... +...++++++.++++.+ ++.|+.+..+.+|++ .+..... +.-.+.++
T Consensus 190 ~~~~l~l~Gi~tH~a~ad~--~~~~~q~~~f~~~~~~l~~~~g~~~~~~~~h~anSa~~~~~~--~~~~d~vR------- 258 (406)
T PRK13340 190 TLPSLGIVGIMTHFPNEDE--DEVRWKLAQFKEQTAWLIGEAGLKREKITLHVANSYATLNVP--EAHLDMVR------- 258 (406)
T ss_pred hCCCccEEEEEEECCCCCc--HHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEecCCHHHHcCc--hhcCCeEe-------
Confidence 4 68999999999998532 34456677777766554 345665553334332 1110000 00000111
Q ss_pred CCCCCcEEEe--cCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcc
Q psy9378 413 PVEEGVSIIA--EPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSF 468 (522)
Q Consensus 413 ~~~~~~~li~--EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~ 468 (522)
.+.-|.- .|...-..++..|.++|+.+|+..... .+ ....+...+.-|-.+.+
T Consensus 259 ---~G~~lyG~~~p~~~~l~pv~~l~a~Vi~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~ 321 (406)
T PRK13340 259 ---PGGILYGDRHPANTEYKRIMTFKSRIASVNTLPKGSTVGYDRTFTLKRDSRLANLPVGYSDGY 321 (406)
T ss_pred ---eCeeeeCCCCCCCCCCcccEEEEEEEEEEEEcCCcCccCCCCeEEcCCCcEEEEEeeecccCc
Confidence 1222221 232233567899999999999886421 11 11246777777766654
No 39
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=99.70 E-value=9.9e-18 Score=147.62 Aligned_cols=63 Identities=49% Similarity=1.035 Sum_probs=56.3
Q ss_pred CCCCcceEEEeccCCCcccccccccCCC-CCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEE
Q psy9378 3 YRETLVPSSVWGPTCDGLDKVNDDILLP-EMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAV 65 (522)
Q Consensus 3 ~~~~~~~~~i~GptCds~D~l~~~~~LP-~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~ 65 (522)
.+.+..+++||||||++.|++.+++.|| ++++||||+|++||||+.+++++||||++|++++|
T Consensus 53 ~~~~~~~~~i~GptC~~~D~i~~~~~lP~~l~~GD~l~f~~~GAYt~~~~~~Fn~~~~p~~v~v 116 (116)
T PF00278_consen 53 DEEPCYPSTIWGPTCDSGDVIARDVMLPKELEVGDWLVFENMGAYTISLSSNFNGFPRPAEVYV 116 (116)
T ss_dssp TTSTEEEEEEEESSSSTTSEEEEEEEEESTTTTT-EEEESS-SSSSGGGSBCGGGT-SCEEEEE
T ss_pred cccCcEEEEEEECCcCCCceEeeeccCCCCCCCCCEEEEecCcccchhhCccccCCCCCCEEEC
Confidence 3456789999999999999999999999 99999999999999999999999999999999875
No 40
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.69 E-value=3.3e-15 Score=157.31 Aligned_cols=235 Identities=10% Similarity=0.058 Sum_probs=163.0
Q ss_pred EEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC----cHHHHHHHHHcCC-eEEEEc---------------------C
Q psy9378 213 FYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND----SQMVLEVLAALGT-GFDCAS---------------------K 265 (522)
Q Consensus 213 ~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~----~~~Vlk~L~~~G~-GfDvaS---------------------K 265 (522)
...+|+++|++|++.+++.++ +.++++++|||+ ...|++.+.+.|+ +|+|+| +
T Consensus 3 ~l~Idl~al~~N~~~i~~~~~~~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~ilvl~~~ 82 (365)
T cd06826 3 WLEISTGAFENNIKLLKKLLGGNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKILRVRTA 82 (365)
T ss_pred EEEEEHHHHHHHHHHHHHhCCCCCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCCEEEEeCC
Confidence 578999999999999999997 679999999987 5679999999884 999999 6
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEee-CCCcccCCCCCccccCcCC-CHHHHHHHHhh-C
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRC-DAEVAQCQLGMKFGCDPIS-EAPRLLRLAKS-L 338 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~-~~~~~~~~~~sKFGi~~e~-e~~~ll~~~k~-~ 338 (522)
++++++.++++++. ++++|+++++.+.+.+ +..+|+||||+ + .+|||+.+++ ++.++++.+++ .
T Consensus 83 ~~~e~~~~i~~~i~-~~v~s~~~l~~l~~~a~~~~~~~~v~LkvDt~G--------m~R~Gi~~~~~~~~~~~~~~~~~~ 153 (365)
T cd06826 83 TPSEIEDALAYNIE-ELIGSLDQAEQIDSLAKRHGKTLPVHLALNSGG--------MSRNGLELSTAQGKEDAVAIATLP 153 (365)
T ss_pred CHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCceEEEEEECCCC--------CCCCCCCcchhhHHHHHHHHHHCC
Confidence 88999999999996 9999999999998754 45789999998 5 3899999851 34566666654 6
Q ss_pred CCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHH-hhcCCCc--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q psy9378 339 DLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLG-NSLGFSM--RVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVE 415 (522)
Q Consensus 339 ~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~-~~~G~~l--~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~ 415 (522)
++++.|+++|+++... . ...++++++.++++.+ ++.|+.+ .+++++.-.+.-..++. -.+.++..+.-|
T Consensus 154 ~l~l~Gi~tH~a~ad~-~-~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~~l~~~~~--~~d~vR~G~~ly---- 225 (365)
T cd06826 154 NLKIVGIMTHFPVEDE-D-DVRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVPEA--HLDMVRPGGILY---- 225 (365)
T ss_pred CCcEEEEEEeCCCCCc-h-HHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHHHhcCccc--cCCcCccCeeee----
Confidence 8999999999998753 2 2345677776666544 4455543 35665544322110000 011222222111
Q ss_pred CCcEEEecCcceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcch
Q psy9378 416 EGVSIIAEPGRYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFN 469 (522)
Q Consensus 416 ~~~~li~EPGR~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~ 469 (522)
-..|-..-..+++.+.++|+.+|...... .+ ....+...+.-|-.+.+.
T Consensus 226 -----G~~p~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~ 282 (365)
T cd06826 226 -----GDTPPSPEYKRIMSFKSRVASLNTYPKGSTVGYDRTFTLTRDSLLANIPVGYSDGYR 282 (365)
T ss_pred -----CCCCCccCceeeEEEEEEEEEEEEcCCcCcccCCCeEEcCCCcEEEEEeeecccCcC
Confidence 11221234678999999999999865321 11 112467777777666553
No 41
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=99.65 E-value=1.6e-16 Score=168.71 Aligned_cols=71 Identities=44% Similarity=0.870 Sum_probs=67.5
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHh
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKD 76 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~ 76 (522)
+..+++||||+|||.|++.+++.||++++||||+|.+|||||.+|+|+||||++|+++++++.+.|+.+++
T Consensus 322 ~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~i~~~GAY~~s~ss~Fn~~~~p~~v~~~~~~~~~~~~~ 392 (394)
T cd06831 322 PLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMMSFSDWYEMQD 392 (394)
T ss_pred CceeEEEEeCCCCHHHeecccCcCCCCCCCCEEEECCCCCcccccccCCCCCCCCcEEEEECcchhhhhhc
Confidence 34679999999999999999999999999999999999999999999999999999999999999988775
No 42
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.62 E-value=8.3e-14 Score=145.32 Aligned_cols=212 Identities=18% Similarity=0.147 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhC--CCCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc---------------------CCHHHHHHHH-
Q psy9378 220 EIVRKHEDWKLKL--PRVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS---------------------KPISHIRYAA- 274 (522)
Q Consensus 220 ~I~~ni~~l~~~l--p~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS---------------------K~~~eL~~A~- 274 (522)
+|++|++++++.+ +++++++++||+.++.|++.+.+.|+ +|+|+| +.+++++.+.
T Consensus 1 ~l~~Ni~~~~~~~~~~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~~~Ili~~~~~~~~~~~~~~~ 80 (345)
T cd07376 1 ALEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGVKDILMAYPLVGPAAIARLAG 80 (345)
T ss_pred ChHHHHHHHHHHHHHcCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCCCeEEEECCcCCHHHHHHHHH
Confidence 4789999999988 47899999999999999999999997 999999 3355555554
Q ss_pred --H--cCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHh--h-CCCeEE
Q psy9378 275 --E--YGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAK--S-LDLDVV 343 (522)
Q Consensus 275 --~--~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k--~-~~L~l~ 343 (522)
+ .++ .+++||+++++.|.+.+. ..+|+|+||++ .+|+|++++ +...+....+ + .++++.
T Consensus 81 l~~~~~~i-~~~Vds~~~l~~l~~~a~~~~~~~~V~l~ID~G--------~~R~Gv~~~-~~~~l~~~~~i~~~~~l~l~ 150 (345)
T cd07376 81 LLRQEAEF-HVLVDSPEALAALAAFAAAHGVRLRVMLEVDVG--------GHRSGVRPE-EAAALALADAVQASPGLRLA 150 (345)
T ss_pred HHhcCCeE-EEEECCHHHHHHHHHHHHhcCCeeEEEEEeCCC--------CCcCCCCCc-HHHHHHHHHHhccCCCeEEe
Confidence 3 566 488999999999987652 46788888865 388999886 5544443322 3 589999
Q ss_pred EEEEecCCCCCC------hHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q psy9378 344 GVSFHVGSGCGD------PPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEG 417 (522)
Q Consensus 344 GlhfH~GS~~~~------~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~ 417 (522)
|+++|.|+.... .+.+.++++.+.++++.++ .|+++.++++||.-..... . + ...
T Consensus 151 Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~vs~G~S~~~~~~------~-----------~-~~~ 211 (345)
T cd07376 151 GVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE-RGLACPTVSGGGTPTYQLT------A-----------G-DRA 211 (345)
T ss_pred EEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEeCCCcChhhc------c-----------c-CCC
Confidence 999999974322 1244556666666665554 5888889998885422110 0 0 011
Q ss_pred cEEEecCcceeec-------------cceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchh
Q psy9378 418 VSIIAEPGRYYVA-------------SAFTLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNC 470 (522)
Q Consensus 418 ~~li~EPGR~lva-------------~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~ 470 (522)
. -.+.||.++.+ ++..++|+|+++-.. +....+|+|.-..-..
T Consensus 212 ~-~~vR~G~~lyg~~~~~~~~~~~~~~~a~~~~~Vis~~~~---------~~~~~~d~G~k~~~~d 267 (345)
T cd07376 212 V-TELRAGSYVFMDTGFDTLGACAQRPAAFRVTTVISRPAP---------TGRAVLDAGWKASSAD 267 (345)
T ss_pred C-EEEcCceEEecchHHhhcccCCccceeEEEEEEEeccCC---------CCeEEECCCccccccc
Confidence 1 24566666654 355556888875421 1367888887655443
No 43
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.62 E-value=1.1e-14 Score=142.90 Aligned_cols=163 Identities=16% Similarity=0.223 Sum_probs=133.5
Q ss_pred EeHHHHHHHHHHHHHhC---C-CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc-----------------------CCH
Q psy9378 216 LDVGEIVRKHEDWKLKL---P-RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS-----------------------KPI 267 (522)
Q Consensus 216 ~Dl~~I~~ni~~l~~~l---p-~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS-----------------------K~~ 267 (522)
-++++|++|++.+++.. + +++++..+|++....+.+.+ +.|+ +|.|++ -.+
T Consensus 3 ~~~~~l~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~-~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~llg~~~~ 81 (222)
T cd00635 3 ENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAI-EAGQRDFGENRVQEALDKAEELPDPDIEWHFIGHLQT 81 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHH-HcCCcccCCCcHHHHHHHHHHccCCCceEEEECcccc
Confidence 47899999999999887 4 68999999999888888764 7785 888887 134
Q ss_pred HHHHHHHH-cCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCe
Q psy9378 268 SHIRYAAE-YGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLD 341 (522)
Q Consensus 268 ~eL~~A~~-~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~ 341 (522)
++++.+++ .++ .+++||+++++.|.+.+ ...+|+||||++.. .+|||++++ ++.++++.++. .+++
T Consensus 82 ~~~~~~~~~~~~-~~~v~s~~~l~~l~~~a~~~~~~~~v~lkvdtG~~------~~R~G~~~~-~~~~~~~~i~~~~~l~ 153 (222)
T cd00635 82 NKVKYAVRLFDL-IHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGGE------ESKSGVAPE-ELEELLEEIAALPNLR 153 (222)
T ss_pred ccHHHHHhhCCE-EEEcCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC------CCCCCCCHH-HHHHHHHHHHcCCCCc
Confidence 56777776 476 48999999999998764 34789999998632 499999997 89999998876 5899
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhc-CCCccEEEEcCC
Q psy9378 342 VVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSL-GFSMRVLDLGGG 388 (522)
Q Consensus 342 l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~-G~~l~~LdIGGG 388 (522)
+.|+|+| +|+..+++.+.++.+.+.++.+.+++. |+.+++||+||-
T Consensus 154 ~~Gi~sh-~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~is~G~t 200 (222)
T cd00635 154 IRGLMTI-APLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMGMS 200 (222)
T ss_pred EEEEEEE-CCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCEEECccc
Confidence 9999999 455667788888999999988877766 599999998883
No 44
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.60 E-value=3.6e-14 Score=148.78 Aligned_cols=235 Identities=13% Similarity=0.079 Sum_probs=159.6
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCC----cHHHHHHHHHcCCeEEEEc----------------------CC
Q psy9378 213 FYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCND----SQMVLEVLAALGTGFDCAS----------------------KP 266 (522)
Q Consensus 213 ~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~----~~~Vlk~L~~~G~GfDvaS----------------------K~ 266 (522)
...+|+++|++|++.+++.+++.++++++|||+ ++.|++.+.+ ..+|+|+| ..
T Consensus 3 ~~~Idl~~l~~N~~~l~~~~~~~~l~~vvKanaYGhG~~~ia~~l~~-~~~f~Vas~~Ea~~lr~~G~~~~ilvl~~~~~ 81 (354)
T cd06827 3 RATIDLAALRHNLRLVRELAPNSKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPILLLEGFFS 81 (354)
T ss_pred EEEEEHHHHHHHHHHHHhhCCCCeEEEEEeeccccCCHHHHHHHHHc-CCEEEEccHHHHHHHHhCCCCCCEEEEECCCC
Confidence 468999999999999999998889999999987 8999999988 77999999 24
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhC--CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEE
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFH--PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVV 343 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~--~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~ 343 (522)
+++++.+++.++ .++++|+++++.+.+.+ ...+|+|+|++++ +|||+.++ ++.++++.+++ .++++.
T Consensus 82 ~~~~~~~~~~~l-~~~v~s~~~l~~l~~~~~~~~~~v~l~vDtGm--------~R~Gi~~~-e~~~~~~~i~~~~~l~l~ 151 (354)
T cd06827 82 ADELPLAAEYNL-WTVVHSEEQLEWLEQAALSKPLNVWLKLDSGM--------HRLGFSPE-EYAAAYQRLKASPNVASI 151 (354)
T ss_pred HHHHHHHHHcCC-EEEECCHHHHHHHHHhcCCCCeEEEEEeeCCc--------CCCCCCHH-HHHHHHHHHHhCCCceEE
Confidence 588999999999 49999999999998864 3468999999873 89999997 88898888876 699999
Q ss_pred EEEEecCCCCCChHHH-HHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEEEe
Q psy9378 344 GVSFHVGSGCGDPPVF-GRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIA 422 (522)
Q Consensus 344 GlhfH~GS~~~~~~~~-~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~li~ 422 (522)
|+|+|+++.....+.+ ..+++++.++.+.. +.. .+++.--+....++ .-.+.++..+.-| . ..+.--.
T Consensus 152 Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~~-----~~~-~h~~nS~~~~~~~~--~~~d~vR~G~~ly-G--~~p~~~~ 220 (354)
T cd06827 152 VLMTHFACADEPDSPGTAKQLAIFEQATAGL-----PGP-RSLANSAAILAWPE--AHGDWVRPGIMLY-G--ASPFADK 220 (354)
T ss_pred EEEeeccCCCCCCcHHHHHHHHHHHHHHhcc-----CCC-eeecCCHHHHCCcc--ccCceEccCceee-C--CCCCccc
Confidence 9999999975422233 45666666655431 111 23222111100000 0012233322211 0 0000000
Q ss_pred cCcceeeccceeEEEEEEEEEeeCCCC-CC-------CCceEEEEEcCCCcCcch
Q psy9378 423 EPGRYYVASAFTLATLIHSKRDILGAN-SS-------VPTHTMYYINDGVYGSFN 469 (522)
Q Consensus 423 EPGR~lva~ag~Lvt~V~~~K~~~~~~-~g-------~~~~~~~~vd~G~~~~~~ 469 (522)
+....-..++..|.++|+.+|...... .| ....+...+.-|-.+.+.
T Consensus 221 ~~~~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~ 275 (354)
T cd06827 221 SGADLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGYP 275 (354)
T ss_pred cccCcCCeeeEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeeccccCcc
Confidence 000134779999999999999854311 11 113467778877766553
No 45
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.54 E-value=7.7e-13 Score=139.53 Aligned_cols=235 Identities=14% Similarity=0.196 Sum_probs=167.8
Q ss_pred EEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCC----CcHHHHHHHHHcCC-eEEEEc---------------------C
Q psy9378 213 FYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCN----DSQMVLEVLAALGT-GFDCAS---------------------K 265 (522)
Q Consensus 213 ~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN----~~~~Vlk~L~~~G~-GfDvaS---------------------K 265 (522)
+..+|+++|++|++.+++..+ +.+++..+||| ....|++.+.+.|+ +|.||+ -
T Consensus 3 ~~~Idl~al~~N~~~i~~~~~~~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~~Ilvl~~~ 82 (368)
T cd06825 3 WLEIDLSALEHNVKEIKRLLPSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGEILILGYT 82 (368)
T ss_pred EEEEEHHHHHHHHHHHHHhCCCCCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCCCEEEEcCC
Confidence 578999999999999999886 67899999996 48999999999996 999999 2
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHh-hCCCeEEE
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAK-SLDLDVVG 344 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k-~~~L~l~G 344 (522)
.++++..++++++. .+++|.++++.+.+.+...+|+|.|++++ +|.|+.++ ++ +++..+. ..++++.|
T Consensus 83 ~~~~~~~~~~~~l~-~~i~~~~~l~~l~~~~~~~~vhlkvDtGm--------~R~G~~~~-~~-~~~~~~~~~~~l~~~G 151 (368)
T cd06825 83 PPVRAKELKKYSLT-QTLISEAYAEELSKYAVNIKVHLKVDTGM--------HRLGESPE-DI-DSILAIYRLKNLKVSG 151 (368)
T ss_pred CHHHHHHHHHcCCE-EEECCHHHHHHHHhcCCCceEEEEeeCCC--------CCCCCCHH-HH-HHHHHHHhCCCCcEEE
Confidence 45788889999985 99999999999998776778999998874 89999886 65 4444454 46899999
Q ss_pred EEEecCCCCC-Ch---HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEE
Q psy9378 345 VSFHVGSGCG-DP---PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSI 420 (522)
Q Consensus 345 lhfH~GS~~~-~~---~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~l 420 (522)
+++|+++... +. +...++++++.++.+.+++.|+++.++++|+--+.-..++. -.+.++..+.-| +
T Consensus 152 i~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~g~~~~~~h~~nSa~~l~~~~~--~~d~vR~G~~lY-----G--- 221 (368)
T cd06825 152 IFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGIEVGKIHIQSSYGILNYPDL--KYDYVRPGILLY-----G--- 221 (368)
T ss_pred EECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhcCCCCCcEEeeCCHHHhCCccc--cCCeEccCeEEE-----C---
Confidence 9999998643 22 23456778888888877777888888888775321111111 011222222111 0
Q ss_pred EecC--c-----ceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcch
Q psy9378 421 IAEP--G-----RYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSFN 469 (522)
Q Consensus 421 i~EP--G-----R~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~~ 469 (522)
.+| . ..-..+++.|.++|+.+|+..... .+ ....+...+.-|-.+.+.
T Consensus 222 -~~p~~~~~~~~~~~l~pv~~l~a~v~~vk~~~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~ 284 (368)
T cd06825 222 -VLSDPNDPTKLGLDLRPVLSLKAKVILVRKVAKGEAVGYGRLFVASRTTRIATVSIGYADGYP 284 (368)
T ss_pred -CCCCCccccccccCceeeEEEEEEEEEEEEcCCCCcCCCCCcEEcCCCcEEEEEeeecccCcC
Confidence 112 1 124679999999999999854311 11 112467778877766654
No 46
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.48 E-value=3.5e-12 Score=135.33 Aligned_cols=230 Identities=19% Similarity=0.177 Sum_probs=158.5
Q ss_pred CCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcC---CeEEEEc------------------
Q psy9378 208 MKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALG---TGFDCAS------------------ 264 (522)
Q Consensus 208 ~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G---~GfDvaS------------------ 264 (522)
+..||+.++|+++|++|++++++..+ +++++..+||+..+.+++.+.+.| .||.|++
T Consensus 3 ~l~tP~l~Idl~al~~Ni~~m~~~~~~~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~d 82 (389)
T cd06817 3 DLPTPALVIDRAKFKRNCERMLQRAKALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVDD 82 (389)
T ss_pred CCCCCeEEEEHHHHHHHHHHHHHHHHHcCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhcccccccc
Confidence 45799999999999999999998775 578999999999999999999998 4899998
Q ss_pred ------CCHHHHHHHHHc----C-CCEEEEcCHHHHHHHhhh-C----CCCeEEEEEeeCCCcccCCCCCccccCcC-CC
Q psy9378 265 ------KPISHIRYAAEY----G-IDTMTFDNEIELQKVKQF-H----PTAQLVIRIRCDAEVAQCQLGMKFGCDPI-SE 327 (522)
Q Consensus 265 ------K~~~eL~~A~~~----G-v~~i~vDS~~EL~~i~~~-~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e-~e 327 (522)
-.+++++.+.+. + + .+.|||.++++.+.+. + ...+|+|.|+++ .+|.|+.++ .+
T Consensus 83 illa~~~~~~~~~~l~~l~~~~~~i-~~~Vds~~~l~~l~~~~a~~~g~~~~V~lkvDtG--------m~R~Gv~~~~~~ 153 (389)
T cd06817 83 ILYGLPVPPSKLPRLAELSKKLGHL-RVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCG--------THRAGVPPESED 153 (389)
T ss_pred EEEECCCCHHHHHHHHHHHhhcCce-EEEECCHHHHHHHHHHHhhccCCceEEEEEEcCC--------CCcCCCCCChHH
Confidence 123556655555 3 6 4889999999999876 4 235788888876 388999864 13
Q ss_pred HHHHHHHHhh--CCCeEEEEEEecCCCC--CChHHHHH----HHHHHHHHHHHHhh-cCCCccEEEEcCCCCCCCCCCHH
Q psy9378 328 APRLLRLAKS--LDLDVVGVSFHVGSGC--GDPPVFGR----AIYSARQIFDLGNS-LGFSMRVLDLGGGYPGYTGYSMN 398 (522)
Q Consensus 328 ~~~ll~~~k~--~~L~l~GlhfH~GS~~--~~~~~~~~----ai~~~~~l~~~~~~-~G~~l~~LdIGGGf~~~~~~~~~ 398 (522)
+.++++.+++ .+|++.|+++|.|+.. .+.+...+ ..+.+.++.+.+++ .|++..++.+|| -|...
T Consensus 154 ~~~l~~~i~~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g~~~~~vs~Gg-Tpt~~----- 227 (389)
T cd06817 154 AKELIQKLEKASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRKLTLSVGA-TPTAH----- 227 (389)
T ss_pred HHHHHHHHHhhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCC-Ccchh-----
Confidence 7778888765 5899999999999843 33444432 33444455566675 888888998665 33211
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEecCcceee--------------ccceeEEEEEEEEEeeCCCCCCCCceEEEEEcCCC
Q psy9378 399 RIAEIINVALDEYFPVEEGVSIIAEPGRYYV--------------ASAFTLATLIHSKRDILGANSSVPTHTMYYINDGV 464 (522)
Q Consensus 399 ~~a~~I~~~l~~~~~~~~~~~li~EPGR~lv--------------a~ag~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~ 464 (522)
+...+. .+... .......+-||-|+. ..|-.++|+|+++...+ ..+.+|+|.
T Consensus 228 -~~~~~~-~~~~~---~~~~~tel~pG~Yvf~D~~~~~~g~~~~~~~Al~VlatViS~~p~~---------~~~~vdaG~ 293 (389)
T cd06817 228 -AAEALV-LIPAP---SLSGLLELHAGNYPFYDLQQVATGLCSEEDIAVFVLAEVISVYPKR---------NEALVNAGV 293 (389)
T ss_pred -hhcccc-ccccc---cCCcceEEccCccccccHHHHhhCCCCHHHeEEEEEEEEEeccCCC---------CeEEEecCc
Confidence 111010 00000 011234566777765 35667889999873111 247888886
Q ss_pred cC
Q psy9378 465 YG 466 (522)
Q Consensus 465 ~~ 466 (522)
-.
T Consensus 294 k~ 295 (389)
T cd06817 294 LA 295 (389)
T ss_pred cc
Confidence 43
No 47
>PLN02537 diaminopimelate decarboxylase
Probab=99.48 E-value=1.1e-14 Score=155.53 Aligned_cols=72 Identities=31% Similarity=0.410 Sum_probs=65.0
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
+..+++|+||||++.|++.+++.||++++||||+|.++||||++|+|+|||+++|+++++..+..++++|++
T Consensus 326 ~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~~~~~GAY~~s~~s~fn~~~~p~~v~~~~~~~~~~ir~~ 397 (410)
T PLN02537 326 EVSTFDVVGPVCESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSITKIRHA 397 (410)
T ss_pred CceEEEEecCccCCCCEEEEcccCCCCCCCCEEEEeCCCcccHhhhHHhcCCCCCeEEEEECCCEEEEEEec
Confidence 456789999999999999999999999999999999999999999999999999999988655556666665
No 48
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=99.48 E-value=2.1e-14 Score=152.03 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=62.4
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHh
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKD 76 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~ 76 (522)
+..+++||||+|+++|++.++..+|++++||||+|+++||||++|+|+|||+++|+++++..+..++++|+
T Consensus 300 ~~~~~~v~G~~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~smss~fn~~~~p~~v~~~~~g~~~lir~ 370 (380)
T TIGR01047 300 GQFSYVLGGCTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKNTTFNGVKLPSLGCLRANGEFQKIRT 370 (380)
T ss_pred CceeEEEEcCCCCcccEEeecccCCCCCCCCEEEEcCcCChhhhccCCCCCCCCCcEEEEecCCcEEEEEe
Confidence 34579999999999999999899999999999999999999999999999999999998754444555554
No 49
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.47 E-value=1.8e-12 Score=137.22 Aligned_cols=173 Identities=13% Similarity=0.060 Sum_probs=125.8
Q ss_pred CCCCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCCcHHHHHHHH-HcCC-eEEEEc--------------------
Q psy9378 208 MKEDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCNDSQMVLEVLA-ALGT-GFDCAS-------------------- 264 (522)
Q Consensus 208 ~~~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~~~~Vlk~L~-~~G~-GfDvaS-------------------- 264 (522)
..+||+.++|+++|++|++.+++..+ +.+++..+|||+...+++.+. +.|+ ||.|++
T Consensus 6 ~l~TP~l~IDl~al~~Ni~~m~~~~~~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~~dILl~~ 85 (379)
T cd06814 6 GIGEPTLLLDKDRLDHNIDLLREHLAGSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPDADILLGK 85 (379)
T ss_pred CCCCCEEEEEHHHHHHHHHHHHHhhCCCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCCcCeEEeC
Confidence 46799999999999999999999886 789999999999999999877 6785 999988
Q ss_pred -CCHHHHHHH----------HHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHH
Q psy9378 265 -KPISHIRYA----------AEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAP 329 (522)
Q Consensus 265 -K~~~eL~~A----------~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~ 329 (522)
-.++.+... .+.++ .+++||.++++.+.+.+ ...+|+|.|++++ +|.|+.+++++.
T Consensus 86 p~~~~~~~r~~~~l~~~~~~~~~~l-~~~Vds~e~l~~l~~~a~~~g~~l~V~lkVDtGm--------~R~Gv~~~~~~~ 156 (379)
T cd06814 86 PMPVAAAARFYRQLTGSAFRPARQL-QWLIDTPERLAQYRALARSLGLTLRINLELDVGL--------HRGGFADPQTLP 156 (379)
T ss_pred CCCcHHHHHHHhhccccccchhcCE-EEEECCHHHHHHHHHHHHHcCCceEEEEEeCCCC--------CCCCCCCHHHHH
Confidence 123333222 23456 38999999999998765 3467777777763 889998752488
Q ss_pred HHHHHHhh-CCCeEEEEEEecCCC--CCCh---HHHH-HHHHHH---HHHHHHHhhcCCCccEEEEcCCCC
Q psy9378 330 RLLRLAKS-LDLDVVGVSFHVGSG--CGDP---PVFG-RAIYSA---RQIFDLGNSLGFSMRVLDLGGGYP 390 (522)
Q Consensus 330 ~ll~~~k~-~~L~l~GlhfH~GS~--~~~~---~~~~-~ai~~~---~~l~~~~~~~G~~l~~LdIGGGf~ 390 (522)
++++.+.. .++++.||+.|-|.. ..+. +... .+.+.. .+..+.++..|+...+++ |||-|
T Consensus 157 ~l~~~i~~~~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vs-~GgTp 226 (379)
T cd06814 157 KALTAIDAPPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLGAHTQKLTLN-TGGSP 226 (379)
T ss_pred HHHHHHHhCCCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCCCccEEe-cCCCc
Confidence 88888765 589999999999883 2222 2222 222222 333344445588899888 55554
No 50
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.44 E-value=2e-12 Score=135.59 Aligned_cols=165 Identities=9% Similarity=0.088 Sum_probs=128.7
Q ss_pred eEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCC-CcHHHHHHHHHcCC-eEEEEc---------------------CC
Q psy9378 212 AFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCN-DSQMVLEVLAALGT-GFDCAS---------------------KP 266 (522)
Q Consensus 212 P~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN-~~~~Vlk~L~~~G~-GfDvaS---------------------K~ 266 (522)
|..++|+++|++|++.+++..+ +++++..+||| ..+.+++.+.+.|+ +|.|++ -.
T Consensus 2 P~l~Idl~al~~Ni~~i~~~~~~~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~~~illlg~~~ 81 (353)
T cd06815 2 PRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPKMLLRIPM 81 (353)
T ss_pred CeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCCCCEEEECCCC
Confidence 8899999999999999998875 68999999999 67999999999996 999998 24
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCe
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLD 341 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~ 341 (522)
+++++.+++.++. .+++|+++++.+.+.+ ...+|.|.|++++ +|+|+.++ |+.++++.++. .+|+
T Consensus 82 ~~~~~~~~~~~~~-~~i~s~~~~~~l~~~a~~~~~~~~vhlkvDtGm--------~R~G~~~~-e~~~~~~~i~~~~~l~ 151 (353)
T cd06815 82 LSEVEDVVKYADI-SLNSELETIKALSEEAKKQGKIHKIILMVDLGD--------LREGVLPE-DLLDFVEEILKLPGIE 151 (353)
T ss_pred HHHHHHHHhhcce-eccChHHHHHHHHHHHHHcCCccceEEEEecCC--------CccccCHH-HHHHHHHHHhCCCCcE
Confidence 5678888887774 6688899998887654 3467899998873 89999987 88899988876 5899
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhh-cCCCccEEEEcC
Q psy9378 342 VVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNS-LGFSMRVLDLGG 387 (522)
Q Consensus 342 l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~-~G~~l~~LdIGG 387 (522)
+.|+++|+++.... +......+++.++.+.+++ .|..+.++++|+
T Consensus 152 ~~Gi~tH~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 197 (353)
T cd06815 152 LVGIGTNLGCYGGV-LPTEENMGKLVELKEEIEKEFGIKLPIISGGN 197 (353)
T ss_pred EEecccCccccCCC-CCCHHHHHHHHHHHHHHHHhhCCCCCEEeccc
Confidence 99999999985321 1111234445555555554 466777888765
No 51
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.43 E-value=1.8e-12 Score=126.28 Aligned_cols=162 Identities=17% Similarity=0.258 Sum_probs=129.2
Q ss_pred EeHHHHHHHHHHHHHhC-CCCeEEeeecCCC-cHHHHHHHH-Hc-CC-eEEEEc-------------------CCHHHHH
Q psy9378 216 LDVGEIVRKHEDWKLKL-PRVDPYYAVKCND-SQMVLEVLA-AL-GT-GFDCAS-------------------KPISHIR 271 (522)
Q Consensus 216 ~Dl~~I~~ni~~l~~~l-p~~~i~YAvKAN~-~~~Vlk~L~-~~-G~-GfDvaS-------------------K~~~eL~ 271 (522)
+|+++|++|++.+++.. +..+++..+|+|. ...+.+.+. .. |+ +|.|++ -.+++++
T Consensus 1 Idl~al~~Ni~~~~~~~~~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g~~il~l~~~~~~~~~ 80 (218)
T PF01168_consen 1 IDLDALRHNIRKIRQRAGPGTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAGAPILVLGPIPPEELE 80 (218)
T ss_dssp EEHHHHHHHHHHHHHHHCTTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTTSEEEEESESTGGGHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcCCceEEEcCCChhhHH
Confidence 69999999999999988 4567999999965 555666555 44 54 888888 1236777
Q ss_pred HHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEEEEE
Q psy9378 272 YAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVVGVS 346 (522)
Q Consensus 272 ~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~Glh 346 (522)
.++++++ .++|||.++++.|.+.+ ...+|+|.|++++ .|.|+.++ ++.++++.+++ .++++.|++
T Consensus 81 ~~~~~~~-~~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdtG~--------~R~G~~~~-~~~~l~~~i~~~~~l~l~Gl~ 150 (218)
T PF01168_consen 81 ELVEYNI-IPTVDSLEQLEALSKAAKKQGKPLKVHLKVDTGM--------GRLGVRPE-ELEELAEAIKALPNLRLEGLM 150 (218)
T ss_dssp HHHHTTE-EEEE-SHHHHHHHHHHHHHHTSTEEEEEEBESSS--------SSSSBECH-HHHHHHHHHHHTTTEEEEEEE
T ss_pred HHhhCcE-EEEEchhhHHHHHHHHHHHcCCceEEEEeecccc--------cccCCCHH-HHHHHHHHHhcCCCceEeeEe
Confidence 8888877 48999999999999886 4678999999874 69999997 99999999976 689999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 347 FHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 347 fH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
+|.++.........++++++.++.+.+++.|++..++++|+
T Consensus 151 th~~~~d~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~s~g~ 191 (218)
T PF01168_consen 151 THFAHADDPDYTNQEQFERFRELAEALEKAGIPPPIVSMGN 191 (218)
T ss_dssp EBGSSTTSSCHHHHHHHHHHHHHHHHHHHTTTTCSEEEEEB
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhccCCCceecCCC
Confidence 99999743222333378888888888888888889999987
No 52
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=99.41 E-value=6e-14 Score=150.04 Aligned_cols=71 Identities=30% Similarity=0.396 Sum_probs=64.0
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
+..+++|+||||++.|++.+++.||++++||||+|.++||||++++|+|||+|+|+++++.. ..++++|++
T Consensus 336 ~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~~~-~~~~~ir~~ 406 (417)
T TIGR01048 336 PTEVADVVGPLCESGDVLARDRELPEVEPGDLLAVFDAGAYGASMSSNYNSRPRPAEVLVDG-GQARLIRRR 406 (417)
T ss_pred CceEEEEEeCCcCCCCEEeeccCCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCeEEEEEC-CEEEEEEeC
Confidence 45689999999999999999999999999999999999999999999999999999998755 456666665
No 53
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=99.41 E-value=1.3e-13 Score=145.84 Aligned_cols=59 Identities=32% Similarity=0.548 Sum_probs=56.5
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEE
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAV 65 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~ 65 (522)
..+++||||+|++.|++.+++.||++++||||+|.+||||+++|+|+|||+++|+++++
T Consensus 319 ~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~~~p~~~~~ 377 (379)
T cd06836 319 EVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGV 377 (379)
T ss_pred ceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHhhhCCCCCeEEEe
Confidence 45899999999999999999999999999999999999999999999999999999865
No 54
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=99.40 E-value=2.2e-13 Score=142.39 Aligned_cols=60 Identities=27% Similarity=0.439 Sum_probs=53.5
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEE
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAV 65 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~ 65 (522)
+..+++||||||++.|++.+...+|++++||||+|++|||||++|+|+||||++|+++++
T Consensus 286 ~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fn~~~~p~~v~~ 345 (346)
T cd06829 286 GAHTYRLGGNSCLAGDVIGDYSFDEPLQVGDRLVFEDMAHYTMVKTNTFNGVRLPSIAIR 345 (346)
T ss_pred CceEEEEEcCCCCcccEEeecccCCCCCCCCEEEEeCchhhhhhhhccccCCCCCeEEec
Confidence 356799999999999999875554579999999999999999999999999999998754
No 55
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=4.4e-11 Score=124.67 Aligned_cols=209 Identities=18% Similarity=0.189 Sum_probs=150.5
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCC----cHHHHHHHHHcCC-eEEEEc-----------------------
Q psy9378 213 FYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCND----SQMVLEVLAALGT-GFDCAS----------------------- 264 (522)
Q Consensus 213 ~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~----~~~Vlk~L~~~G~-GfDvaS----------------------- 264 (522)
...+|+++|++|++.+++..++.+++-.||||. ...++++|.+.|+ +|.||+
T Consensus 6 ~~~Idl~Al~~N~~~i~~~~~~~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~IlvL~g~ 85 (360)
T COG0787 6 TAEIDLGALRHNLRALRELAGPAKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPILVLEGF 85 (360)
T ss_pred EEEEeHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCCCEEEEcCc
Confidence 468999999999999999998899999999999 7899999999997 999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCC---CeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHH-hhCCC
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPT---AQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLA-KSLDL 340 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~---~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~-k~~~L 340 (522)
-++++++.+.++++. .++.|+++|+.+.+.... .+|.|.|++++ +|.|+.++ +....+..+ +..++
T Consensus 86 ~~~~~~~~~~~~~l~-~~v~s~~ql~~l~~~~~~~~~l~vhLkiDTGM--------~RlG~~~~-e~~~~~~~~~~~~~~ 155 (360)
T COG0787 86 FPAEELELAAAYNLT-PVVNSLEQLEALKNAALKNKPLKVHLKIDTGM--------NRLGLRPE-EAVALAIDLIALKNL 155 (360)
T ss_pred CChhhHHHHHHcCCe-EEECCHHHHHHHHHhhhhcCceEEEEEECCCC--------CcCCCChH-HHHHHHHHHhhccCC
Confidence 334566789999996 999999999999886433 57777777663 89999997 766655554 55677
Q ss_pred eEEEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHhhcCCCccEEEE--cCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCC
Q psy9378 341 DVVGVSFHVGSGCG-DPPVFGRAIYSARQIFDLGNSLGFSMRVLDL--GGGYPGYTGYSMNRIAEIINVALDEYFPVEEG 417 (522)
Q Consensus 341 ~l~GlhfH~GS~~~-~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdI--GGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~ 417 (522)
.+.|+.+|+.+... +.....++++++. +...+++.+.+++ .+|+--.. +...+.++..+.-| +..
T Consensus 156 ~~~gi~SHfa~ADe~~~~~~~~Q~~~F~-----~~~~~~~~~~~h~aNSa~~~~~~----~~~~d~vRpGi~lY---G~~ 223 (360)
T COG0787 156 DLEGIFSHFACADEPEDPYTLKQLERFN-----LAKQGLPGELSHLANSAGLLLGP----DYHFDMVRPGIALY---GLS 223 (360)
T ss_pred ceEEEEcccCCCCCCCChHHHHHHHHHH-----HHhccCCCceEEEeccHHHhcCc----ccccceeecceeee---cCC
Confidence 79999999999754 2335556666654 3344555555544 44431110 22334444444433 101
Q ss_pred cEEEecCcc-eeeccceeEEEEEEEEEeeCC
Q psy9378 418 VSIIAEPGR-YYVASAFTLATLIHSKRDILG 447 (522)
Q Consensus 418 ~~li~EPGR-~lva~ag~Lvt~V~~~K~~~~ 447 (522)
+ +++. .=..++++|-++|+.+|+...
T Consensus 224 P----~~~~~~~lkpvmtl~a~ii~vr~v~~ 250 (360)
T COG0787 224 P----SGGLDNGLKPVMTLKARIIQVRTVPA 250 (360)
T ss_pred c----ccccCCCcceeEEEEEEEEEEEEeCC
Confidence 1 1111 446789999999999999865
No 56
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=99.37 E-value=3.6e-13 Score=141.98 Aligned_cols=58 Identities=31% Similarity=0.425 Sum_probs=55.5
Q ss_pred cceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEE
Q psy9378 7 LVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~ 64 (522)
..+++|+||||++.|++.+++.||++++||||+|.+||||+++|+|+||++++|++++
T Consensus 310 ~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~~~~v~ 367 (368)
T cd06840 310 AGNADVVGPICESGDVLGRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVV 367 (368)
T ss_pred cceEEEEeCCcCCCCEEeecccCCCCCCCCEEEEecCCcchHhhhhhccCCCCCCEEe
Confidence 4679999999999999999999999999999999999999999999999999999875
No 57
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=99.37 E-value=3.7e-13 Score=142.21 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=55.5
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCC-CCCCCCCCeEEE
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVAS-TFNGFPIPKVHA 64 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s-~fNg~~~p~~~~ 64 (522)
+..+++|+||+|++.|++.++++||++++||||+|.++||||++|++ +||++++|++++
T Consensus 317 ~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~i~~~GAY~~~~s~~~fn~~~~p~~v~ 376 (377)
T cd06843 317 RDTPVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIY 376 (377)
T ss_pred CceEEEEEeCCCCCCCEEeeccccCCCCCCCEEEEcCCCccchhhchhhhhCCCCCCEEe
Confidence 34679999999999999999999999999999999999999999996 999999999875
No 58
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=99.35 E-value=5.1e-13 Score=141.08 Aligned_cols=59 Identities=27% Similarity=0.448 Sum_probs=55.8
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCC-CCCCCCCCCeEEE
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVA-STFNGFPIPKVHA 64 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~-s~fNg~~~p~~~~ 64 (522)
+..+++|+||||++.|++.+++.||++++||||+|.+||||+++|+ |+||+|++|++++
T Consensus 322 ~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~~~~ 381 (382)
T cd06839 322 ERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVL 381 (382)
T ss_pred CceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEecCCCcccccChhhHhCCCCCCEEe
Confidence 4568999999999999999999999999999999999999999998 5999999999885
No 59
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=99.35 E-value=2.5e-13 Score=145.61 Aligned_cols=70 Identities=27% Similarity=0.488 Sum_probs=62.6
Q ss_pred cceEEEeccCCCcccccccc-------cCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEcchhHHHHHhh
Q psy9378 7 LVPSSVWGPTCDGLDKVNDD-------ILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIEEHIWLMLKDR 77 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~~-------~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~~~~~~~~r~~ 77 (522)
..+++|+||+|++.|++..+ ++||++++||||+|.++|||+++|+|+||++++|+++++. +...+++|++
T Consensus 332 ~~~~~v~Gp~C~~~D~l~~~~~~~~~~~~lP~l~~GD~l~i~~~GAY~~~~ss~fn~~~~p~~v~~~-~g~~~~ir~~ 408 (420)
T PRK11165 332 TVDTVVAGPLCESGDVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRR 408 (420)
T ss_pred ceEEEEEeCCCCCCCEEeeccCcccceeECCCCCCCCEEEEecCCCCcHHHHHhhcCCCCCcEEEEE-CCEEEEEEeC
Confidence 46899999999999999865 8999999999999999999999999999999999999775 5556677665
No 60
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=99.35 E-value=8.6e-13 Score=138.50 Aligned_cols=61 Identities=61% Similarity=1.174 Sum_probs=57.1
Q ss_pred CCcceEEEeccCCCcccccccccCCCC-CCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEE
Q psy9378 5 ETLVPSSVWGPTCDGLDKVNDDILLPE-MPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAV 65 (522)
Q Consensus 5 ~~~~~~~i~GptCds~D~l~~~~~LP~-l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~ 65 (522)
.+..+++|+||||+++|++.+++.||+ +++||||+|.++|||+++|+|+|||+++|.++++
T Consensus 301 ~~~~~~~v~G~~C~~~D~l~~~~~lp~~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~ 362 (362)
T cd00622 301 GELYPSSLWGPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIVYV 362 (362)
T ss_pred CCeeeEEEEcCCCCcccEecccCcCcccCCCCCEEEEcCCCCccccccCCCCCCCCCeeEeC
Confidence 345689999999999999999999998 9999999999999999999999999999999863
No 61
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=99.34 E-value=6.5e-13 Score=140.76 Aligned_cols=60 Identities=37% Similarity=0.568 Sum_probs=55.9
Q ss_pred CCcceEEEeccCCCcccccccccCCCC-CCCCcEEEEcCCCcccccCCCCCCCCCCCeEEE
Q psy9378 5 ETLVPSSVWGPTCDGLDKVNDDILLPE-MPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64 (522)
Q Consensus 5 ~~~~~~~i~GptCds~D~l~~~~~LP~-l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~ 64 (522)
.+.++++|+||+|+|+|++++++.||+ +++||||+|.++||||++|+|+|||+++|++++
T Consensus 333 ~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~ 393 (394)
T COG0019 333 AEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVL 393 (394)
T ss_pred CCeEEEEEECCCcCCCCeeeeeeeCCCCCCCCCEEEEcccchhhhhhhccccCCCCCceee
Confidence 345789999999999999999999999 569999999999999999999999999999875
No 62
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=99.34 E-value=7.5e-13 Score=140.80 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=55.7
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCC-CCCCCCCCCeEEE
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVA-STFNGFPIPKVHA 64 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~-s~fNg~~~p~~~~ 64 (522)
...+++|+||||+++|++++++.||++++||||+|.++|||+++|+ |+||++++|.+++
T Consensus 338 ~~~~~~i~G~~C~~~D~~~~~~~lp~~~~GD~l~~~~~GAY~~~~s~~~fn~~~~~~~v~ 397 (398)
T TIGR03099 338 VREIASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVELL 397 (398)
T ss_pred CceEEEEEeCCCCCCCEEeecCcCCCCCCCCEEEEcCCCCcchhhChHhhhCCCCCCEEe
Confidence 3568899999999999999999999999999999999999999999 6999999999885
No 63
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=99.33 E-value=1.1e-12 Score=137.67 Aligned_cols=60 Identities=45% Similarity=0.800 Sum_probs=56.9
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEE
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAV 65 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~ 65 (522)
+..+++|+||||++.|++.++..||++++||||+|.++|||+++++++||+|++|.++++
T Consensus 309 ~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~ 368 (368)
T cd06810 309 PLVPATLAGPLCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEYLV 368 (368)
T ss_pred CceeEEEECCCCCCCcEEeecccCCCCCCCCEEEEcCCCCCchhhcccccCCCCCcEEeC
Confidence 457899999999999999999999999999999999999999999999999999999863
No 64
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.33 E-value=6.8e-13 Score=139.59 Aligned_cols=59 Identities=32% Similarity=0.486 Sum_probs=56.3
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEE
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~ 64 (522)
+..+++|+||||++.|++.+++.||+|++||||+|.+||||+++++++|||+++|++++
T Consensus 314 ~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~f~~~~~p~~v~ 372 (373)
T cd06828 314 ETEKVDVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVL 372 (373)
T ss_pred CceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCcEEe
Confidence 45789999999999999999999999999999999999999999999999999999885
No 65
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=99.33 E-value=7.8e-13 Score=141.37 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=53.3
Q ss_pred CcceEEEeccCCCcccccccccCCC---------C--CCCCcEEEEcCCCcccccCCCCCCCCCCCeEEE
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLP---------E--MPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHA 64 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP---------~--l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~ 64 (522)
+..+++||||||||.|++++++.+| + +++||||+|.++||||.+|||+||||++|+++.
T Consensus 339 ~~~~~~v~Gp~C~s~D~~~~~~~l~~~~~~~~lp~~~~~~GD~l~~~~~GAY~~s~ss~fn~~~~p~~v~ 408 (409)
T cd06830 339 PTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVGAYQEILGDLHNLFGDTNAVH 408 (409)
T ss_pred CceeEEEeccCcCCCCEEeeecccccccccccCCCCCCCCCCEEEEEeccHhhHHHHhcccCCCCCCEEe
Confidence 4567999999999999999998854 3 479999999999999999999999999999875
No 66
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=99.24 E-value=7.7e-12 Score=132.27 Aligned_cols=61 Identities=30% Similarity=0.450 Sum_probs=56.4
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEEEc
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAVIE 67 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~~ 67 (522)
+..+++|+||+|++.|++.+++.||++++||||+|.++||||++|+|+| .+++|+++++.+
T Consensus 317 ~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~s~~f-~~~~p~~v~~~~ 377 (379)
T cd06841 317 TSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQF-IRPRPAVYLIDN 377 (379)
T ss_pred CcceEEEECCCcCCCCEEeeCCcCCCCCCCCEEEEeCCCCCChhhCccc-cCCCCcEEEEeC
Confidence 4568999999999999999999999999999999999999999999999 588999997743
No 67
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=99.20 E-value=5.9e-10 Score=109.77 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhCC----CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc------------------------CCH-H
Q psy9378 219 GEIVRKHEDWKLKLP----RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------------------------KPI-S 268 (522)
Q Consensus 219 ~~I~~ni~~l~~~lp----~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------------------------K~~-~ 268 (522)
+.|.++++...+..+ ..+++..+||.....|.+.+ +.|+ +|.|++ -.+ +
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~-~~G~~~fgva~~~Ea~~k~~~Lr~~g~~~~~~lg~~~~~~ 85 (224)
T cd06824 7 AQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAY-AAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGPIQSNK 85 (224)
T ss_pred HHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHH-HcCCcccCcChHHHHHHHHHHhccCCCeeEEEEcCchhhh
Confidence 456666665444432 37899999999999999996 7885 888877 011 2
Q ss_pred HHHHHHHcCCCEEEEcCHHHHHHHhhhCC----CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEE
Q psy9378 269 HIRYAAEYGIDTMTFDNEIELQKVKQFHP----TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVV 343 (522)
Q Consensus 269 eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~----~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~ 343 (522)
+.+.+.++++ ..++||.++++.+.+.+. ..+|+|.|+++.+ .+|||++++ ++.++++.++. .++++.
T Consensus 86 ~~~~~~~~~~-~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~~G------m~R~Gi~~~-~~~~~~~~i~~~~~l~l~ 157 (224)
T cd06824 86 TKLIAENFDW-VHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNISGE------DSKSGVAPE-DAAELAEAISQLPNLRLR 157 (224)
T ss_pred HHHHHhhCCE-EEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcCCC------CCCCCCCHH-HHHHHHHHHhcCCCCcEE
Confidence 3455566777 489999999999987652 3678889998643 389999997 88899988876 689999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 344 GVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 344 GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
|+|+|.++ ..+.+...+..+.+.++.+.+++.|+.+.++++|+
T Consensus 158 Gl~tH~a~-~~~~~~q~~~f~~~~~~~~~l~~~~~~~~~is~gn 200 (224)
T cd06824 158 GLMAIPAP-TDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGM 200 (224)
T ss_pred EEEEeCCC-CCChHHHHHHHHHHHHHHHHHHhhCCCCCEEeCcC
Confidence 99999665 34444444445555444565666677888999887
No 68
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.19 E-value=1.1e-11 Score=143.68 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=56.8
Q ss_pred CcceEEEeccCCCcccccccccCCCCCCCCcEEEEcCCCcccccCCCCCCCCCCCeEEEE
Q psy9378 6 TLVPSSVWGPTCDGLDKVNDDILLPEMPVGSWLIYRDMGAYTLPVASTFNGFPIPKVHAV 65 (522)
Q Consensus 6 ~~~~~~i~GptCds~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fNg~~~p~~~~~ 65 (522)
+..+++|+||+|+++|++.+++.||++++||||+|.++|||+++|+|+|||+|+|+++++
T Consensus 800 ~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~p~p~ev~~ 859 (861)
T PRK08961 800 AAGTADVVGPICESSDVLGKRRRLPATAEGDVILIANAGAYGYSMSSTYNLREPAREVVL 859 (861)
T ss_pred CceEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEeCCCcchHHHhhhhhCCCCCcEEEE
Confidence 456789999999999999999999999999999999999999999999999999999864
No 69
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.19 E-value=8.9e-10 Score=115.80 Aligned_cols=228 Identities=12% Similarity=0.174 Sum_probs=153.3
Q ss_pred eEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCC----CcHHHHHHHHHcCCeEEEEc----------------------C
Q psy9378 212 AFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCN----DSQMVLEVLAALGTGFDCAS----------------------K 265 (522)
Q Consensus 212 P~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN----~~~~Vlk~L~~~G~GfDvaS----------------------K 265 (522)
....+|+++|++|++.+++..++.+++..+||| ....|++.+.+ --+|.||+ -
T Consensus 4 ~~~~Idl~al~~N~~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~-~~~faVa~l~Ea~~LR~~Gi~~~Ilvl~~~~ 82 (355)
T PRK03646 4 IQASLDLQALKQNLSIVREAAPGARVWSVVKANAYGHGIERIWSALGA-TDGFAVLNLEEAITLRERGWKGPILMLEGFF 82 (355)
T ss_pred EEEEEEHHHHHHHHHHHHHhCCCCeEEEEEeeccccCCHHHHHHHHhc-CCEEEEeeHHHHHHHHhcCCCCCEEEEeCCC
Confidence 357899999999999999988888999999996 48899998865 34899988 2
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC--CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeE
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFH--PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDV 342 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~--~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l 342 (522)
.+++++.+.++++. .+++|.++++.+.+.. +..+|+|.|++++ +|.|+.++ |+.++++.++. .++++
T Consensus 83 ~~~~~~~~~~~~l~-~~i~s~~~l~~l~~~~~~~~~~vhLkvDTGM--------~R~G~~~~-e~~~~~~~i~~~~~l~~ 152 (355)
T PRK03646 83 HAQDLELYDQHRLT-TCVHSNWQLKALQNARLKAPLDIYLKVNSGM--------NRLGFQPE-RVQTVWQQLRAMGNVGE 152 (355)
T ss_pred CHHHHHHHHHCCCE-EEECCHHHHHHHHHhccCCCeEEEEEeeCCC--------CCCCCCHH-HHHHHHHHHHhCCCCEE
Confidence 56789999999995 9999999999998764 3467888888874 89999997 88898888866 58999
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEEEe
Q psy9378 343 VGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIA 422 (522)
Q Consensus 343 ~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~li~ 422 (522)
.|+++|+++... ++...++++++.++.+ +++. .+++++--+....++ .-.+.++..+.-| + .
T Consensus 153 ~Gi~sH~a~ad~-~~~~~~Q~~~F~~~~~-----~~~~-~~h~~nSa~~~~~~~--~~~d~vR~Gi~lY-----G----~ 214 (355)
T PRK03646 153 MTLMSHFARADH-PDGISEAMARIEQAAE-----GLEC-ERSLSNSAATLWHPQ--AHFDWVRPGIILY-----G----A 214 (355)
T ss_pred EEEEcCCCCCCC-CCHHHHHHHHHHHHHh-----ccCC-CeeeeCCHHHHCCcc--ccCCeeccceeee-----C----C
Confidence 999999998643 2334455665555442 2221 133322111100000 0011222222111 0 1
Q ss_pred cCc---c---ee-eccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcc
Q psy9378 423 EPG---R---YY-VASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSF 468 (522)
Q Consensus 423 EPG---R---~l-va~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~ 468 (522)
+|. + .+ ..+++.|.++|+.+|...... .+ ....+...+.-|--+.+
T Consensus 215 ~p~~~~~~~~~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~ 275 (355)
T PRK03646 215 SPSGQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARREQRIGIVAAGYADGY 275 (355)
T ss_pred CCCcccccccccCceEEEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeecccccc
Confidence 221 0 12 678999999999999876421 10 11245666776665554
No 70
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=99.18 E-value=6.7e-11 Score=104.04 Aligned_cols=87 Identities=21% Similarity=0.249 Sum_probs=62.7
Q ss_pred eEEEEEEEEEeeCCCCCCCCceEEEEEcCCCcCcchhhhcccCccccccCCCCCCCCcceEEeeecCCCCCccccc----
Q psy9378 434 TLATLIHSKRDILGANSSVPTHTMYYINDGVYGSFNCIIYDHAVCTPIPFNVMDDSQVSLRSPLFLQESFLLSCLS---- 509 (522)
Q Consensus 434 ~Lvt~V~~~K~~~~~~~g~~~~~~~~vd~G~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~l~Gp~C~~~D~l~---- 509 (522)
+|+|+|+++|+..+....+..+.++|+|+|+|+++.+.++++.++++.+.+ ..+....++.|+||||++.|++.
T Consensus 1 ~Lvt~Vi~~k~~~~~~~~~~~~~~~~vd~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~GptC~~~D~i~~~~~ 78 (116)
T PF00278_consen 1 TLVTRVIGVKRRRDSDLKNKKRRWYYVDDGVYGSFDPWLYDHQFPILPLSR--PDEEPCYPSTIWGPTCDSGDVIARDVM 78 (116)
T ss_dssp EEEEEEEEEEEETT---HCTTEEEEEESS-TTTCCHHHHHS----EEEESS--TTTSTEEEEEEEESSSSTTSEEEEEEE
T ss_pred CEEEEEEEEEEcCCCccccceeeEEEEeCChhhChHHHhhCcCceeeeecc--ccccCcEEEEEEECCcCCCceEeeecc
Confidence 699999999998752211223578889999999999999988766655544 45557889999999999999776
Q ss_pred ------cCcEEEEeccccC
Q psy9378 510 ------LFFCVLWLCGQVY 522 (522)
Q Consensus 510 ------~~~~~~~~~~~~~ 522 (522)
.||+|+|..-|||
T Consensus 79 lP~~l~~GD~l~f~~~GAY 97 (116)
T PF00278_consen 79 LPKELEVGDWLVFENMGAY 97 (116)
T ss_dssp EESTTTTT-EEEESS-SSS
T ss_pred CCCCCCCCCEEEEecCccc
Confidence 3899999777777
No 71
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.17 E-value=5.4e-10 Score=129.49 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=173.2
Q ss_pred CccccCCccccCC-CCCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC----cHHHHHHHHHcCC-eEEEEc----
Q psy9378 196 QVPVYNYPDNVGM-KEDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND----SQMVLEVLAALGT-GFDCAS---- 264 (522)
Q Consensus 196 g~~l~~l~~~~~~-~~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~----~~~Vlk~L~~~G~-GfDvaS---- 264 (522)
+..++++.+.+.+ .+.++..+|+++|++|++.+++.++ +.+++..||||. ...|++.+.+.|+ +|.|++
T Consensus 443 ~~~le~i~~~~~~~~~~~~~~Idl~al~~N~~~i~~~~~~~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~l~Ea 522 (822)
T PRK11930 443 KFEFEQITELLEQKVHETVLEINLNAIVHNLNYYRSKLKPETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAYADEG 522 (822)
T ss_pred CCCHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhCCCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeeHHHH
Confidence 3455666655444 3566689999999999999999775 688999999999 7899999999996 999998
Q ss_pred ----------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC-----CCCeEEEEEeeCCCcccCCCCCccccC
Q psy9378 265 ----------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH-----PTAQLVIRIRCDAEVAQCQLGMKFGCD 323 (522)
Q Consensus 265 ----------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~-----~~~~V~LRIn~~~~~~~~~~~sKFGi~ 323 (522)
-.++++..++++++. ++++|.++++.+.+.+ ...+|.|.|++++ +|.|+.
T Consensus 523 ~~lr~~g~~~~Ilvl~~~~~~~~~~~~~~l~-~~i~s~~~l~~l~~~~~~~~~~~~~v~l~vDtGm--------~R~G~~ 593 (822)
T PRK11930 523 VSLRKAGITLPIMVMNPEPTSFDTIIDYKLE-PEIYSFRLLDAFIKAAQKKGITGYPIHIKIDTGM--------HRLGFE 593 (822)
T ss_pred HHHHhcCCCCCEEEEeCCHHHHHHHHHcCCE-EEECCHHHHHHHHHHHHHcCCCceEEEEEeeCCC--------CCCCCC
Confidence 235788899999985 9999999999998764 3457888888774 899999
Q ss_pred cCCCHHHHHHHHhh-CCCeEEEEEEecCCCCC-Ch-HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHH
Q psy9378 324 PISEAPRLLRLAKS-LDLDVVGVSFHVGSGCG-DP-PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRI 400 (522)
Q Consensus 324 ~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~~~-~~-~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~ 400 (522)
++ ++.++++.++. .++++.|+.+|+++... +. ....++++++.++.+.+++.|....+++++.--+.-..++ ..
T Consensus 594 ~~-~~~~~~~~i~~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~~h~~nS~~~~~~~~--~~ 670 (822)
T PRK11930 594 PE-DIPELARRLKKQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEALGYKPIRHILNSAGIERFPD--YQ 670 (822)
T ss_pred hH-HHHHHHHHHHhCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCCcEEccCCHHHhCCcc--cc
Confidence 87 88888888765 58999999999998643 32 2345678888888777665432212556554332211010 00
Q ss_pred HHHHHHHHHhhCCCCCCcEEEecCc---ceeeccceeEEEEEEEEEeeCCCC----CC----CCceEEEEEcCCCcCcc
Q psy9378 401 AEIINVALDEYFPVEEGVSIIAEPG---RYYVASAFTLATLIHSKRDILGAN----SS----VPTHTMYYINDGVYGSF 468 (522)
Q Consensus 401 a~~I~~~l~~~~~~~~~~~li~EPG---R~lva~ag~Lvt~V~~~K~~~~~~----~g----~~~~~~~~vd~G~~~~~ 468 (522)
.+.++..+.-| . ..|. ..-..+++.|-++|+.+|...... .+ ....+...+.-|-.+.+
T Consensus 671 ~d~vR~G~~ly-G--------~~p~~~~~~~l~pv~~l~a~i~~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~ 740 (822)
T PRK11930 671 YDMVRLGIGLY-G--------VSASGAGQQALRNVSTLKTTILQIKHVPKGETVGYGRKGVVTKPSRIATIPIGYADGL 740 (822)
T ss_pred CCeEeeCceeE-C--------CCCCCCccccCEEeeEEEEEEEEEEEcCCcCCCCCCCcEEcCCCcEEEEEeeeccccc
Confidence 12233332222 1 1121 123578999999999999886421 11 01235666776665554
No 72
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=99.16 E-value=1.1e-11 Score=133.06 Aligned_cols=58 Identities=21% Similarity=0.437 Sum_probs=52.3
Q ss_pred cceEEEeccCCCccccccc-ccCCC-CCCCCcEEEEcCCCcccccCC-CCCCCCCCCeEEE
Q psy9378 7 LVPSSVWGPTCDGLDKVND-DILLP-EMPVGSWLIYRDMGAYTLPVA-STFNGFPIPKVHA 64 (522)
Q Consensus 7 ~~~~~i~GptCds~D~l~~-~~~LP-~l~~GD~l~~~~~GAY~~~~~-s~fNg~~~p~~~~ 64 (522)
..+++|+||+|+++|++++ .+.|| ++++||+|+|.++||||++++ |+|||+++|++++
T Consensus 362 ~~~~~v~Gp~C~~~D~l~~~~~~lp~~~~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~ev~ 422 (423)
T cd06842 362 PIEAYLAGASCLESDLITRRKIPFPRLPKPGDLLVFPNTAGYQMDFLESRFHRHPLPRRVV 422 (423)
T ss_pred CceEEEeCccccchhhhhhhhccCCCCCCCCCEEEEecchHHHHHhhhhhhcCCCCCcccc
Confidence 4678999999999999994 67899 599999999999999999664 7999999999875
No 73
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=99.02 E-value=1.9e-08 Score=99.51 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhC----CCCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc-------------------------CCHH
Q psy9378 219 GEIVRKHEDWKLKL----PRVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS-------------------------KPIS 268 (522)
Q Consensus 219 ~~I~~ni~~l~~~l----p~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS-------------------------K~~~ 268 (522)
..|+++++...+.. +++++.-.+|+++...+.+ +.+.|+ .|.+++ .+..
T Consensus 9 ~~i~~~i~~~~~~~~~~~~~~~l~aV~K~~~~~~i~~-l~~~G~~~fg~~~~~Ea~~k~~~lr~~~~~~~~~ig~~q~~~ 87 (229)
T TIGR00044 9 EDIKTKIEAANTHVNRNPSKVKLLAVSKTKPASAIQI-AYDAGQRAFGENYVQELVEKIKLLEDLGKLEWHFIGPLQSNK 87 (229)
T ss_pred HHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHH-HHHcCCccccEEcHHHHHHHHHHhcccCCceEEEECCCcchH
Confidence 44555555443332 2588999999999555544 888895 888888 1223
Q ss_pred HHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEE
Q psy9378 269 HIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVV 343 (522)
Q Consensus 269 eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~ 343 (522)
....+...++ ..++||.+.++.|.+.+ ...+|+|.||++.+ .+|.|+.++ ++.++++.++. .+|++.
T Consensus 88 ~~~~~~~~~l-~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdtg~g------m~R~G~~~~-e~~~~~~~i~~~~~l~l~ 159 (229)
T TIGR00044 88 DRLVVENFDW-VHTIDSLKIAKKLNEQREKLQPPLNVLLQINISDE------ESKSGIQPE-ELLELAIQIEELKHLKLR 159 (229)
T ss_pred HHHHhhhcCE-EEEECCHHHHHHHHHHHHhcCCCceEEEEEECCCC------CCCCCCCHH-HHHHHHHHHhcCCCCeEE
Confidence 3334445566 38999999999998875 34789999998532 389999997 89999988876 589999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCC--CccEEEEcC
Q psy9378 344 GVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGF--SMRVLDLGG 387 (522)
Q Consensus 344 GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~--~l~~LdIGG 387 (522)
|+++|.+.. .+.+...+..+.+.++.+.+++.+. .+..|.+|+
T Consensus 160 Gl~th~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lS~G~ 204 (229)
T TIGR00044 160 GLMTIGAPT-DSHEDQEENFRFMKLLFWQIKQDSPFGTIDTLSMGM 204 (229)
T ss_pred EEEEeCCCC-CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEeeeC
Confidence 999999985 3556666667777777777766554 566777665
No 74
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=98.88 E-value=1.5e-08 Score=105.95 Aligned_cols=176 Identities=16% Similarity=0.138 Sum_probs=121.1
Q ss_pred cCCCCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc------------------
Q psy9378 206 VGMKEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS------------------ 264 (522)
Q Consensus 206 ~~~~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS------------------ 264 (522)
...+.||+.++|++++.+|+.++++... ++++...+|+.+++.+.+.+.+.|. |+-|++
T Consensus 13 ~~~l~tP~~liD~dr~~~Ni~r~qa~~~~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi~dIl~a 92 (368)
T COG3616 13 AADLDTPAALIDLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGIDDILLA 92 (368)
T ss_pred hcCCCCchhhhhHHHHhhhHHHHHHhccccCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCccceEEe
Confidence 3667899999999999999999999884 7899999999999999999999995 999998
Q ss_pred ---CCHHHHH-HH-HHcCCC--EEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHh-
Q psy9378 265 ---KPISHIR-YA-AEYGID--TMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAK- 336 (522)
Q Consensus 265 ---K~~~eL~-~A-~~~Gv~--~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k- 336 (522)
-..+.++ ++ +...+. .+.+||.+.++.+.+.+.+...-||+..+.+. ...|.|+...+....+.+.++
T Consensus 93 ~p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D~----G~~R~Gv~t~~~~~~La~~~~~ 168 (368)
T COG3616 93 YPLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPLRVLIEIDS----GLHRSGVRTPEVAEALAAEIAA 168 (368)
T ss_pred cCCCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCCCeeEEEEeCC----CCCccCcCChHHHHHHHHhhhh
Confidence 1112222 11 122222 36799999999999887544333444443322 147899987513444445553
Q ss_pred hCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 337 SLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 337 ~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
..++.+.|+.+|.|......+......+ ......++..|...+.+..||
T Consensus 169 ~~~l~~~Gv~~y~gh~~~~~~~~~~~~~--~~a~~~~~~~g~~~~~vt~gg 217 (368)
T COG3616 169 APGLRLAGVMTYPGHSYGPGSEVAAAER--VHAAALLGAVGRAAPVLTSGG 217 (368)
T ss_pred ccceEEeeeecccccccCCcchhhhhhh--hhHHHHhcccCCccceeecCC
Confidence 4699999999999775433222222111 223344566788899999555
No 75
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=98.76 E-value=2e-07 Score=94.05 Aligned_cols=209 Identities=14% Similarity=0.101 Sum_probs=144.1
Q ss_pred CeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCC-cHHHHHHHHHcCCeEEEEc----------------------C
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCND-SQMVLEVLAALGTGFDCAS----------------------K 265 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~-~~~Vlk~L~~~G~GfDvaS----------------------K 265 (522)
-|-.++|++.|++|.+.+++.+. ++++++..|.-. ++.+++.|.+.|++--++| .
T Consensus 3 ~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P 82 (353)
T COG3457 3 NPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSP 82 (353)
T ss_pred CCcEEEeHHHHHHhHHHHHHHHHHcCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCceEeecc
Confidence 47788999999999999998774 899999999955 9999999999999888888 2
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCC
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDL 340 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L 340 (522)
..++++..+++ +..+++.+++-++++.+.+ +..+|+|+|..++. .....|+..+ ++++.++++.+ .|+
T Consensus 83 ~~sei~~vv~~-~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~Dl-----reG~~~~~~~-~l~~~V~eI~~lkGi 155 (353)
T COG3457 83 CMSEIEDVVRK-VDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGDL-----REGQWGFLIE-DLEETVEEIQQLKGI 155 (353)
T ss_pred cHHHHHHHHHh-cCeEEEecHHHHHHHHHHHHHhCcceeEEEEEEcccc-----cCcchhhHHH-HHHHHHHHHhcCCCc
Confidence 34566665553 5567788888888888875 45799999998752 1122233335 77888888876 599
Q ss_pred eEEEEEEecCCCC---CChHHHHHHHHHHHHHHHHHh-hcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCC
Q psy9378 341 DVVGVSFHVGSGC---GDPPVFGRAIYSARQIFDLGN-SLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEE 416 (522)
Q Consensus 341 ~l~GlhfH~GS~~---~~~~~~~~ai~~~~~l~~~~~-~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~ 416 (522)
+++||-+|+++-. ..++.+... .+..+.++ ..|+++++|+-|.--.. +..+.-+ .+
T Consensus 156 ~~vGlgTnF~Cfg~v~PTp~n~~~l----l~~~~~lE~~~Gi~l~~vsagnats~-~~L~~~~---------------~~ 215 (353)
T COG3457 156 HLVGLGTNFPCFGDVLPTPENLESL----LQGKKKLEASSGIQLKQVSAGNATSL-TLLPMGS---------------LP 215 (353)
T ss_pred eEEeeecccccccCcCCCcccHHHH----HHHHHHHHHhcCceeEEecCCCccch-hhhhccc---------------cc
Confidence 9999999998842 233333333 33444444 45999999994442211 0000000 01
Q ss_pred CcEEEecCcceeec--------------cceeEEEEEEEEEeeCC
Q psy9378 417 GVSIIAEPGRYYVA--------------SAFTLATLIHSKRDILG 447 (522)
Q Consensus 417 ~~~li~EPGR~lva--------------~ag~Lvt~V~~~K~~~~ 447 (522)
++ =..|||.+++. +|+.+.+.|+-+|.++.
T Consensus 216 ~i-nhlriG~al~~g~~~~n~~~~~~e~da~~lesEIie~k~k~s 259 (353)
T COG3457 216 GI-NHLRIGEALTGGVTPTNQYIDWLEQDAMLLESEIIEVKDKPS 259 (353)
T ss_pred cc-ccccccceeecccccchhcccccccchhhhhhhhhhccCCCc
Confidence 11 13455555543 58899999999998765
No 76
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=97.84 E-value=0.00018 Score=71.19 Aligned_cols=160 Identities=15% Similarity=0.106 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhC--CCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc---------C----------------CHHHH
Q psy9378 218 VGEIVRKHEDWKLKL--PRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS---------K----------------PISHI 270 (522)
Q Consensus 218 l~~I~~ni~~l~~~l--p~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS---------K----------------~~~eL 270 (522)
++.|++++++..+.- ..+++.-+.|..+...|.. +.++|.- ..- | ...-+
T Consensus 5 l~~i~~~i~~a~~~r~~~~v~LvaVsK~~~~~~i~~-~~~~G~~--~fGENrvQe~~~K~~~l~~~i~wHfIG~LQ~NK~ 81 (227)
T cd06822 5 LKRIRQAVKRASKKLPASKPRLVAVSKTKPAELIKE-AYDAGQR--HFGENYVQELIEKAPDLPIDIKWHFIGHLQSNKV 81 (227)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEECCCCHHHHHH-HHHcCCc--cccCcHHHHHHHHHHhccCCceEEEECCCchhhH
Confidence 455666665543321 2588898999998776654 4455631 111 1 11122
Q ss_pred HHHHH-cCCCE-EEEcCHHHHHHHhhhC------CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHh-h-CCC
Q psy9378 271 RYAAE-YGIDT-MTFDNEIELQKVKQFH------PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAK-S-LDL 340 (522)
Q Consensus 271 ~~A~~-~Gv~~-i~vDS~~EL~~i~~~~------~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k-~-~~L 340 (522)
+.+++ ..+.. =++||++-++.|.+.+ ...+|+|-||.+.. .+|.|+.++ ++.++++.+. + .+|
T Consensus 82 k~i~~~~~~~~ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e------~~K~Gv~~~-e~~~l~~~i~~~~~~L 154 (227)
T cd06822 82 KKLLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGE------ESKSGLEPS-EAVELVKHIIEECPNL 154 (227)
T ss_pred HHHhccccccEEEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC------CCCCCCCHH-HHHHHHHHHHhhCCCc
Confidence 33332 12222 3789999999988763 34689999998742 389999997 9999999986 6 599
Q ss_pred eEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhc-CCC--ccEEEEcC
Q psy9378 341 DVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSL-GFS--MRVLDLGG 387 (522)
Q Consensus 341 ~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~-G~~--l~~LdIGG 387 (522)
++.||++|.|......+.-.+..+.+.++++.+++. |+. +..|.+|+
T Consensus 155 ~l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGm 204 (227)
T cd06822 155 KFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGM 204 (227)
T ss_pred eEEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecc
Confidence 999999999874432233455667777777777665 655 67888776
No 77
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=97.15 E-value=0.022 Score=55.96 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHhCC----CCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-------------------------CCHH
Q psy9378 218 VGEIVRKHEDWKLKLP----RVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-------------------------KPIS 268 (522)
Q Consensus 218 l~~I~~ni~~l~~~lp----~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-------------------------K~~~ 268 (522)
+..|++++++-.+... .+++.-..|.-+...| +.+.++|+..==-+ ....
T Consensus 7 l~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I-~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~LQsN 85 (228)
T COG0325 7 LAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDI-REAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGPLQSN 85 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHHH-HHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEechhhhh
Confidence 4556666665555432 4788888888876654 45666664211111 1112
Q ss_pred HHHHHHHcCCCE-EEEcCHHHHHHHhhhC---C-CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeE
Q psy9378 269 HIRYAAEYGIDT-MTFDNEIELQKVKQFH---P-TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDV 342 (522)
Q Consensus 269 eL~~A~~~Gv~~-i~vDS~~EL~~i~~~~---~-~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l 342 (522)
-.+.++++ +.. =++|++.-+++|.+.+ + ..+++|.||... ..||-|+.++ ++.++++.+.. ++|++
T Consensus 86 K~k~v~~~-~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi~~------E~sK~G~~~~-e~~~~~~~~~~~~~L~l 157 (228)
T COG0325 86 KVKLVAEN-FDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNISG------EESKSGVPPE-ELDELAQEVQELPNLEL 157 (228)
T ss_pred HHHHHHhh-cceeeecCHHHHHHHHHHHHHhCCCCceEEEEEecCC------ccccCCCCHH-HHHHHHHHHHhCCCCeE
Confidence 23333332 332 3689988888886543 2 478999999864 2599999998 99999999976 69999
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEc
Q psy9378 343 VGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLG 386 (522)
Q Consensus 343 ~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIG 386 (522)
.||.+-..- ..|++......+..+++++.+.+...+++.|..|
T Consensus 158 ~GLM~ipp~-~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMG 200 (228)
T COG0325 158 RGLMTIPPL-TDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMG 200 (228)
T ss_pred eEEEeeCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCCCeecCc
Confidence 999986543 4477777778888888888777665577777765
No 78
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=92.08 E-value=2.4 Score=44.55 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=56.5
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecC-------CCCC-------ChHHHHHH-HHHHHHHHHHHhhcCCCccEEEEcCCC--
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVG-------SGCG-------DPPVFGRA-IYSARQIFDLGNSLGFSMRVLDLGGGY-- 389 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~G-------S~~~-------~~~~~~~a-i~~~~~l~~~~~~~G~~l~~LdIGGGf-- 389 (522)
.+.++.+++|+.|+++. |-||.. .|.. +.+...++ .+-..++++.+++.|..++++-||-=.
T Consensus 59 ~~~~~akrak~~Gm~vl-ldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 59 DVIALAKRAKAAGMKVL-LDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINN 137 (332)
T ss_dssp HHHHHHHHHHHTT-EEE-EEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGG
T ss_pred HHHHHHHHHHHCCCeEE-EeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccc
Confidence 67788888899999987 999973 3321 22333333 333456677888999999999999643
Q ss_pred --C--CCCCCCHHHHHHHHH---HHHHhhCCCCCCcEEEecCc
Q psy9378 390 --P--GYTGYSMNRIAEIIN---VALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 390 --~--~~~~~~~~~~a~~I~---~~l~~~~~~~~~~~li~EPG 425 (522)
- .....+++.+++.++ +++++..+ ...+-|.++-|
T Consensus 138 Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p-~~kV~lH~~~~ 179 (332)
T PF07745_consen 138 GMLWPDGKPSNWDNLAKLLNAGIKAVREVDP-NIKVMLHLANG 179 (332)
T ss_dssp ESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS-TSEEEEEES-T
T ss_pred cccCcCCCccCHHHHHHHHHHHHHHHHhcCC-CCcEEEEECCC
Confidence 1 123456888887776 45555544 23344444433
No 79
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=90.94 E-value=0.75 Score=43.38 Aligned_cols=101 Identities=20% Similarity=0.149 Sum_probs=63.1
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCC-------ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCC---CCCCC--C
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCG-------DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG---YPGYT--G 394 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~-------~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGG---f~~~~--~ 394 (522)
++.++.+.+++.|+.+.+++++...... ..+ +.++++.+.+.++.++++| .+.+.+..| ..... .
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg--~~~i~~~~g~~~~~~~~~~~ 104 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLG--AKYIVVHSGRYPSGPEDDTE 104 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHT--BSEEEEECTTESSSTTSSHH
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhC--CCceeecCcccccccCCCHH
Confidence 4667777788899999999998766442 234 6677888888888888888 455666555 22211 1
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccc
Q psy9378 395 YSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASA 432 (522)
Q Consensus 395 ~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~a 432 (522)
..++.+++.+++..+..- ..++++.+||-.......
T Consensus 105 ~~~~~~~~~l~~l~~~a~--~~gv~i~lE~~~~~~~~~ 140 (213)
T PF01261_consen 105 ENWERLAENLRELAEIAE--EYGVRIALENHPGPFSET 140 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHTSEEEEE-SSSSSSSE
T ss_pred HHHHHHHHHHHHHHhhhh--hhcceEEEecccCccccc
Confidence 224444444444332221 247999999887766533
No 80
>KOG3157|consensus
Probab=90.17 E-value=1.9 Score=41.98 Aligned_cols=98 Identities=26% Similarity=0.392 Sum_probs=66.7
Q ss_pred EEcCHHHHHHHhhh----CC--CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh--CCCeEEEEEEecCCCC
Q psy9378 282 TFDNEIELQKVKQF----HP--TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS--LDLDVVGVSFHVGSGC 353 (522)
Q Consensus 282 ~vDS~~EL~~i~~~----~~--~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~--~~L~l~GlhfH~GS~~ 353 (522)
+|||+.-.+++.+. .+ ..+|++.||+.. ..+|+|+.+. ++.++++.++. .+|++.||.+ +||-.
T Consensus 103 tVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSG------Ed~K~Gieps-e~~~l~~~i~~~c~nL~f~GlMT-IGs~~ 174 (244)
T KOG3157|consen 103 TVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSG------EDSKSGIEPS-EAPELAEHIKSECKNLKFSGLMT-IGSFD 174 (244)
T ss_pred ecchHHHHHHHHHHHHhcCCCCCeEEEEEeecCC------ccccCCCChh-hhHHHHHHHHHhCCcceeeeeEE-ecccc
Confidence 58888888877664 23 357888888652 3599999997 99999999976 5999999976 45422
Q ss_pred ------CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCC
Q psy9378 354 ------GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPG 391 (522)
Q Consensus 354 ------~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~ 391 (522)
.++ .|....+ +++ +.++++|+..+.+-+.=|...
T Consensus 175 ~s~ss~eNp-DF~~L~~-~r~--~ic~~lg~~~dq~eLSMGMS~ 214 (244)
T KOG3157|consen 175 NSHSSGENP-DFQVLVK-LRE--SICKKLGIPADQVELSMGMSA 214 (244)
T ss_pred ccccCCCCc-cHHHHHH-HHH--HHHHHhCCChHHhhhhcccch
Confidence 122 2433322 222 355678887777777767644
No 81
>PRK05354 arginine decarboxylase; Provisional
Probab=89.00 E-value=0.59 Score=53.14 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCCcceEEEeccCCCccccccc---------ccCCCCCCCCc--EEEEcCCCcccccCCCCCCCCCCCeEEEEE
Q psy9378 4 RETLVPSSVWGPTCDGLDKVND---------DILLPEMPVGS--WLIYRDMGAYTLPVASTFNGFPIPKVHAVI 66 (522)
Q Consensus 4 ~~~~~~~~i~GptCds~D~l~~---------~~~LP~l~~GD--~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~ 66 (522)
+.++...+|+.=||||.+.+-+ ..+||+++.|+ +|.|-.+|||=-.++...|-|..|.++.|.
T Consensus 490 e~p~~~~~l~DiTCDSDg~i~~fi~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~ 563 (634)
T PRK05354 490 EEPTRRAVLADITCDSDGKIDQFIDGQGIKTTLPLHELDPGEPYYLGFFLVGAYQEILGDMHNLFGDTNAVHVR 563 (634)
T ss_pred CCcceeeEEecccccCCCchhcccCCcCCcCceeCCccCCCCccEEEEEecchhhHhhccccccCCCCCEEEEE
Confidence 4577889999999999997754 47888898887 889999999999999999999999776553
No 82
>PRK01060 endonuclease IV; Provisional
Probab=88.88 E-value=1.7 Score=43.83 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=57.6
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC----CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCC-CCHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG----CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTG-YSMNRIA 401 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~----~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~-~~~~~~a 401 (522)
++.++-+.+++.|+.+.++..|..-. ..+++.+.++++.+++.++.++++|.+.=.+..|........ ..++.+.
T Consensus 48 ~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~ 127 (281)
T PRK01060 48 NIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIA 127 (281)
T ss_pred HHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHH
Confidence 55666666778899877777776421 235566777888888888988888866434443322211111 1244555
Q ss_pred HHHHHHHHhhCCCCCCcEEEecC
Q psy9378 402 EIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~EP 424 (522)
+.+++.+++ ..+++|.+|+
T Consensus 128 e~l~~l~~~----~~gv~l~iEn 146 (281)
T PRK01060 128 ESLNEALDK----TQGVTIVLEN 146 (281)
T ss_pred HHHHHHHhc----CCCCEEEEec
Confidence 555544332 3579999998
No 83
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=87.91 E-value=20 Score=37.08 Aligned_cols=145 Identities=17% Similarity=0.299 Sum_probs=79.0
Q ss_pred HHHHHHcCCCEEEEcC-HHH-HHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHH---HHHhhCCCeEEE
Q psy9378 270 IRYAAEYGIDTMTFDN-EIE-LQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLL---RLAKSLDLDVVG 344 (522)
Q Consensus 270 L~~A~~~Gv~~i~vDS-~~E-L~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll---~~~k~~~L~l~G 344 (522)
|.+.-+.|+..++-.. ..+ ++.|.+.. ---|-|||-.+.. ...++++|--.. ++...+ ++++..|+++.
T Consensus 48 l~~lE~~Gvkf~d~ng~~qD~~~iLK~~G-vNyvRlRvwndP~---dsngn~yggGnn-D~~k~ieiakRAk~~GmKVl- 121 (403)
T COG3867 48 LIELENSGVKFFDTNGVRQDALQILKNHG-VNYVRLRVWNDPY---DSNGNGYGGGNN-DLKKAIEIAKRAKNLGMKVL- 121 (403)
T ss_pred HHHHHHcCceEEccCChHHHHHHHHHHcC-cCeEEEEEecCCc---cCCCCccCCCcc-hHHHHHHHHHHHHhcCcEEE-
Confidence 4445566776332211 222 33333322 2245666654421 123466777655 555555 55566788754
Q ss_pred EEEecCCCC------CChHHH--------HHH-HHHHHHHHHHHhhcCCCccEEEEc----CCCC---CCCCCCHHHHHH
Q psy9378 345 VSFHVGSGC------GDPPVF--------GRA-IYSARQIFDLGNSLGFSMRVLDLG----GGYP---GYTGYSMNRIAE 402 (522)
Q Consensus 345 lhfH~GS~~------~~~~~~--------~~a-i~~~~~l~~~~~~~G~~l~~LdIG----GGf~---~~~~~~~~~~a~ 402 (522)
+.||..--- ..|.+| .++ .+-.+..+...++.|+.+.++-+| |||- +.. .+|+.+++
T Consensus 122 ~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~-~~f~k~a~ 200 (403)
T COG3867 122 LDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEG-RNFDKMAA 200 (403)
T ss_pred eeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCC-cChHHHHH
Confidence 788874421 223333 222 222344456667889999999998 6664 222 37999998
Q ss_pred HHHHHHHhhCCCCCCcEEE
Q psy9378 403 IINVALDEYFPVEEGVSII 421 (522)
Q Consensus 403 ~I~~~l~~~~~~~~~~~li 421 (522)
.+++.++....-++.++++
T Consensus 201 L~n~g~~avrev~p~ikv~ 219 (403)
T COG3867 201 LLNAGIRAVREVSPTIKVA 219 (403)
T ss_pred HHHHHhhhhhhcCCCceEE
Confidence 8887766543223445444
No 84
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=85.23 E-value=3.3 Score=42.84 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=77.8
Q ss_pred EcCHHHHHHHhhhCCCCeE-EEEEeeCCC-cccCC---CCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCC----C
Q psy9378 283 FDNEIELQKVKQFHPTAQL-VIRIRCDAE-VAQCQ---LGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSG----C 353 (522)
Q Consensus 283 vDS~~EL~~i~~~~~~~~V-~LRIn~~~~-~~~~~---~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~----~ 353 (522)
..|+..|.++.+....-.| +.|+..+.- -++.. .+...-...+ ++.++-+.+++.++ -+.+|.+.. .
T Consensus 44 ~~Nl~~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~-~~~~~g~~~~~~~i---rls~Hp~y~inL~S 119 (303)
T PRK02308 44 LSNLENLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKE-ELREIGEFIKEHNI---RLSFHPDQFVVLNS 119 (303)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHH-HHHHHHHHHHHcCC---CeeccChhhhcCCC
Confidence 4566666666654322122 468876531 11111 0111111122 44455555566676 478886542 2
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCC---ccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEEEec--Cccee
Q psy9378 354 GDPPVFGRAIYSARQIFDLGNSLGFS---MRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSIIAE--PGRYY 428 (522)
Q Consensus 354 ~~~~~~~~ai~~~~~l~~~~~~~G~~---l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~li~E--PGR~l 428 (522)
.+++.+...++....-++.+..+|.+ .=+|+.||.. ++....++.+.+.+.+..+.. +.+|.+| .|.+-
T Consensus 120 ~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~~-~~ke~al~r~~~~l~~l~~~~-----~~~L~LEN~~~~~t 193 (303)
T PRK02308 120 PKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGGAY-GDKEKALERFIENIKKLPESI-----KKRLTLENDDKTYT 193 (303)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCccC-CCHHHHHHHHHHHHHHhhHHh-----CCEEEEeeCCCCCC
Confidence 35677777888888878888889987 6678888865 333334666666666554432 3677777 45443
Q ss_pred ecc
Q psy9378 429 VAS 431 (522)
Q Consensus 429 va~ 431 (522)
+.+
T Consensus 194 ~~e 196 (303)
T PRK02308 194 VEE 196 (303)
T ss_pred HHH
Confidence 333
No 85
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=84.19 E-value=10 Score=38.47 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=36.6
Q ss_pred EEEeHHHHHHHHHHHHHh-CCCCeEEeeecCCC-cHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEEE
Q psy9378 214 YVLDVGEIVRKHEDWKLK-LPRVDPYYAVKCND-SQMVLEVLAALGTGFDCAS---KPISHIRYAAEYGIDTMTF 283 (522)
Q Consensus 214 yV~Dl~~I~~ni~~l~~~-lp~~~i~YAvKAN~-~~~Vlk~L~~~G~GfDvaS---K~~~eL~~A~~~Gv~~i~v 283 (522)
..++.+...+-++.+.++ ++.+++-+. |+++ ...-++.+++.+....+.+ -..++++.|.+.|+..+.+
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~P-~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTSP-AASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEECC-CCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 446666666666666553 122344332 4443 2344555555443222222 4466788888888875544
No 86
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.63 E-value=7.7 Score=38.88 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=59.3
Q ss_pred cCcCCCHHHHHHHHhhCCCeEEEEEE--ecCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC---CC
Q psy9378 322 CDPISEAPRLLRLAKSLDLDVVGVSF--HVGS--GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY---TG 394 (522)
Q Consensus 322 i~~e~e~~~ll~~~k~~~L~l~Glhf--H~GS--~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~---~~ 394 (522)
.+.+ ++.++.+.+++.||.+.++.+ |..- ...+++.+.++++.+++.++.++++|. ++|.++|+-... ..
T Consensus 49 ~~~~-~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~--~~v~~~~~~~~~~~~~~ 125 (284)
T PRK13210 49 WSKE-ERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGI--RTIQLAGYDVYYEEKSE 125 (284)
T ss_pred CCHH-HHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CEEEECCcccccccccH
Confidence 3444 567777778889999987753 2111 123566677778888888888888885 556665431111 11
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 395 YSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 395 ~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
..++.+.+.+++..+.. . ..+++|.+|+-
T Consensus 126 ~~~~~~~~~l~~l~~~a-~-~~gv~l~lE~~ 154 (284)
T PRK13210 126 ETRQRFIEGLAWAVEQA-A-AAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHHHHH-H-HhCCEEEEEec
Confidence 12445555555433222 1 35799999983
No 87
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=81.71 E-value=7.7 Score=39.02 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=59.7
Q ss_pred cccCcCCCHHHHHHHHhhCCCeEEEEEE--ecCC--CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--
Q psy9378 320 FGCDPISEAPRLLRLAKSLDLDVVGVSF--HVGS--GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-- 393 (522)
Q Consensus 320 FGi~~e~e~~~ll~~~k~~~L~l~Glhf--H~GS--~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-- 393 (522)
.+.+++ ++.++.+.+++.||.+.++.. |..- ...+.+...++++.+++.++.++++|. ++|.++|+-....
T Consensus 52 ~~~~~~-~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~--~~i~~~~~~~~~~~~ 128 (283)
T PRK13209 52 LDWSRE-QRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGI--RVIQLAGYDVYYEQA 128 (283)
T ss_pred cCCCHH-HHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEECCcccccccc
Confidence 344555 667777777889999987653 3211 113455666778888888888888884 4666776532111
Q ss_pred -CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 394 -GYSMNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 394 -~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
...++.+.+.+++..+.. . ..+++|.+|+.
T Consensus 129 ~~~~~~~~~~~l~~l~~~A-~-~~GV~i~iE~~ 159 (283)
T PRK13209 129 NNETRRRFIDGLKESVELA-S-RASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-HhCCEEEEeec
Confidence 112334444444433221 1 25799999985
No 88
>PRK12677 xylose isomerase; Provisional
Probab=81.00 E-value=10 Score=40.68 Aligned_cols=96 Identities=22% Similarity=0.207 Sum_probs=55.5
Q ss_pred HHHHHHHHhhCCCeEEEEEE----ec----CC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC-C--CC
Q psy9378 328 APRLLRLAKSLDLDVVGVSF----HV----GS-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY-T--GY 395 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~Glhf----H~----GS-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~-~--~~ 395 (522)
+.++.+.+++.||++.++.. |. |+ ...+.+....+++.+++.++.++++|.+. +.+=+|..+. + ..
T Consensus 69 ~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~--Vvv~~G~~g~~~~~~~ 146 (384)
T PRK12677 69 IKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKT--YVMWGGREGAEYDAAK 146 (384)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeeCCCCccCcccC
Confidence 45656666788999888743 21 22 22345566667888999999999998654 4443443222 2 23
Q ss_pred CHHHHHHHHHHHHHh---hCCC-CCCcEEEecCc
Q psy9378 396 SMNRIAEIINVALDE---YFPV-EEGVSIIAEPG 425 (522)
Q Consensus 396 ~~~~~a~~I~~~l~~---~~~~-~~~~~li~EPG 425 (522)
++++..+...+.|++ +..+ +.+++|.+||=
T Consensus 147 d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpk 180 (384)
T PRK12677 147 DVRAALDRYREAIDLLAAYVKDQGYDLRFALEPK 180 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccC
Confidence 444444433333332 2221 24599999985
No 89
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=80.99 E-value=8.8 Score=38.37 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=55.8
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCC---C--CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC---CCCHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGS---G--CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT---GYSMN 398 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS---~--~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~---~~~~~ 398 (522)
++.++-+++++.||++.+++.+.++ . ..+.+...+.++.+++.++.++.+|.+ .|-+..|..+.. ...++
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~--~i~~~~~~~~~~~~~~~~~~ 125 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAG--YTLISAAHAGYLTPPNVIWG 125 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEEcCCCCCCCCCHHHHHH
Confidence 5666666777889999887653222 1 123455666778888888888888854 445544432211 11244
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 399 RIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 399 ~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
.+.+.++...+. .. ..+++|.+||-
T Consensus 126 ~~~~~l~~l~~~-a~-~~gv~l~iE~~ 150 (275)
T PRK09856 126 RLAENLSELCEY-AE-NIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHH-HH-HcCCEEEEecC
Confidence 444444443322 22 36899999983
No 90
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=80.42 E-value=13 Score=36.71 Aligned_cols=94 Identities=18% Similarity=0.150 Sum_probs=53.4
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCC-------CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCC---
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGC-------GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYS--- 396 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~-------~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~--- 396 (522)
++.++.+.+++.||++.+++...+.-. ..++...+..+.++++++.++++|. +.|.+..|... ...+
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~--~~i~~~~g~~~-~~~~~~~ 116 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGC--PQVNCLAGKRP-AGVSPEE 116 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCC--CEEEECcCCCC-CCCCHHH
Confidence 566777777889999999886654211 1122222334455566677777774 46667666421 1122
Q ss_pred -HHHHHHHHHHHHHhhCCCCCCcEEEecCc
Q psy9378 397 -MNRIAEIINVALDEYFPVEEGVSIIAEPG 425 (522)
Q Consensus 397 -~~~~a~~I~~~l~~~~~~~~~~~li~EPG 425 (522)
++.+.+.+++..+ +.. ..+++|.+||.
T Consensus 117 ~~~~~~~~l~~l~~-~A~-~~gi~l~lE~~ 144 (254)
T TIGR03234 117 ARATLVENLRYAAD-ALD-RIGLTLLIEPI 144 (254)
T ss_pred HHHHHHHHHHHHHH-HHH-hcCCEEEEEEC
Confidence 3444444544332 222 36799999983
No 91
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=79.95 E-value=11 Score=38.03 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=60.4
Q ss_pred ccCcCCCHHHHHHHHhhCCCeEEEEEEec----CCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC--C-CC
Q psy9378 321 GCDPISEAPRLLRLAKSLDLDVVGVSFHV----GSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP--G-YT 393 (522)
Q Consensus 321 Gi~~e~e~~~ll~~~k~~~L~l~GlhfH~----GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~--~-~~ 393 (522)
+.++. +..++.+.+++.||++.++.+-. .-...+++...+.++.+++.++.++++|.+ .|-++|+-. . ..
T Consensus 48 ~~~~~-~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~--~v~~~~~~~~~~~~~ 124 (279)
T TIGR00542 48 DWSRE-QRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIR--TIQLAGYDVYYEEHD 124 (279)
T ss_pred CCCHH-HHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCC--EEEecCcccccCcCC
Confidence 44454 67777778888999998876311 001235666677788888888888888864 555665421 1 11
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 394 GYSMNRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 394 ~~~~~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
...++.+.+.+++..+.. . ..+++|.+|+
T Consensus 125 ~~~~~~~~~~l~~l~~~A-~-~~Gv~l~lE~ 153 (279)
T TIGR00542 125 EETRRRFREGLKEAVELA-A-RAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHH-H-HcCCEEEEee
Confidence 122555555555543322 1 3579999996
No 92
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=79.60 E-value=19 Score=32.64 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=51.6
Q ss_pred cccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHH
Q psy9378 320 FGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNR 399 (522)
Q Consensus 320 FGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~ 399 (522)
.|++. ..+++++.+++.+.+++|++...++.. ..+.++.+.+++.|..--.+=+||+.++.. .++++
T Consensus 33 LG~~v--~~e~~v~aa~~~~adiVglS~L~t~~~----------~~~~~~~~~l~~~gl~~v~vivGG~~~i~~-~d~~~ 99 (128)
T cd02072 33 LGVLS--PQEEFIDAAIETDADAILVSSLYGHGE----------IDCKGLREKCDEAGLKDILLYVGGNLVVGK-QDFED 99 (128)
T ss_pred CCCCC--CHHHHHHHHHHcCCCEEEEeccccCCH----------HHHHHHHHHHHHCCCCCCeEEEECCCCCCh-hhhHH
Confidence 35544 467888888889999999999988753 223345556777776324466688764432 23333
Q ss_pred HHHHHHHHHHhhCCCCCCcEEEecCcc
Q psy9378 400 IAEIINVALDEYFPVEEGVSIIAEPGR 426 (522)
Q Consensus 400 ~a~~I~~~l~~~~~~~~~~~li~EPGR 426 (522)
..+ .|++ -++.-++.||.
T Consensus 100 ~~~----~L~~-----~Gv~~vf~pgt 117 (128)
T cd02072 100 VEK----RFKE-----MGFDRVFAPGT 117 (128)
T ss_pred HHH----HHHH-----cCCCEEECcCC
Confidence 222 2332 24566777774
No 93
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=76.71 E-value=24 Score=32.12 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=40.7
Q ss_pred cccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCC
Q psy9378 320 FGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPG 391 (522)
Q Consensus 320 FGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~ 391 (522)
.|.+. ..+++++.+++.+.+++|++...++.. ..+.++.+.+++.|..-..+=+||+..+
T Consensus 35 LG~~v--~~e~~v~aa~~~~adiVglS~l~~~~~----------~~~~~~~~~l~~~gl~~~~vivGG~~vi 94 (134)
T TIGR01501 35 LGVLS--PQEEFIKAAIETKADAILVSSLYGHGE----------IDCKGLRQKCDEAGLEGILLYVGGNLVV 94 (134)
T ss_pred CCCCC--CHHHHHHHHHHcCCCEEEEecccccCH----------HHHHHHHHHHHHCCCCCCEEEecCCcCc
Confidence 35543 467888889999999999999987642 1233455667777764445666776543
No 94
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=76.68 E-value=5.9 Score=40.51 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=35.3
Q ss_pred HHHhhCCCeEEEEEEecCCC----CCChHHHHHHHHHHHHHHHHHhhcCCCcc-----EEEEcCCCCCCCCCCHHHHHHH
Q psy9378 333 RLAKSLDLDVVGVSFHVGSG----CGDPPVFGRAIYSARQIFDLGNSLGFSMR-----VLDLGGGYPGYTGYSMNRIAEI 403 (522)
Q Consensus 333 ~~~k~~~L~l~GlhfH~GS~----~~~~~~~~~ai~~~~~l~~~~~~~G~~l~-----~LdIGGGf~~~~~~~~~~~a~~ 403 (522)
+.+++.|++ ++||.|.. ..+++....+++...--.+.+..+|..-. .|++||.++ +....++++.+.
T Consensus 94 ~~~~~~~iR---ls~HP~qf~vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~Yg-dK~~al~RF~~~ 169 (275)
T PF03851_consen 94 DLAKENGIR---LSMHPDQFTVLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYG-DKEAALERFIEN 169 (275)
T ss_dssp HHHHHTT-E---EEE---TT--TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS--HHHHHHHHHHH
T ss_pred HHHHHcCCe---EEecCCcceeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCC-ChHHHHHHHHHH
Confidence 344567865 67999874 23567777777766555667777887655 788888874 433345555554
Q ss_pred H
Q psy9378 404 I 404 (522)
Q Consensus 404 I 404 (522)
+
T Consensus 170 ~ 170 (275)
T PF03851_consen 170 F 170 (275)
T ss_dssp H
T ss_pred H
Confidence 4
No 95
>PLN02439 arginine decarboxylase
Probab=75.66 E-value=3.9 Score=45.92 Aligned_cols=63 Identities=29% Similarity=0.263 Sum_probs=50.1
Q ss_pred CCCcceEEEeccCCCcccccccc------cCCCCCCC--C--cEEEEcCCCcccccCCCCCCCCCCCeEEEEE
Q psy9378 4 RETLVPSSVWGPTCDGLDKVNDD------ILLPEMPV--G--SWLIYRDMGAYTLPVASTFNGFPIPKVHAVI 66 (522)
Q Consensus 4 ~~~~~~~~i~GptCds~D~l~~~------~~LP~l~~--G--D~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~ 66 (522)
+.++...+|+.=||||.+.+-.- .+|++++. | -+|-|-.+|||=-.++...|-|+.|.++.|.
T Consensus 417 e~p~~~~~l~diTCDsDg~i~~~~~~~~~lplh~~~~~~~e~y~lg~Fl~GAYQe~lg~~HnLfg~~~~v~v~ 489 (559)
T PLN02439 417 ERPTVRGILSDLTCDSDGKIDKFIGGEGSLPLHELEKNGGGPYYLGMFLGGAYQEALGSLHNLFGGPSVVRVS 489 (559)
T ss_pred CCcceeEEEeccccCCCCchhcccCCCCCCCCCCCCCCCCCCCEEEEEeccHhHHHhccccccCCCCCEEEEE
Confidence 45778899999999999986533 44445544 3 4677899999999999999999999887765
No 96
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=75.13 E-value=32 Score=36.80 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=55.1
Q ss_pred HHHHHHHhhCCCeEEEEEEec--------CC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC-C--CCC
Q psy9378 329 PRLLRLAKSLDLDVVGVSFHV--------GS-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY-T--GYS 396 (522)
Q Consensus 329 ~~ll~~~k~~~L~l~GlhfH~--------GS-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~-~--~~~ 396 (522)
.++-+.+++.||.+.++..-. |+ ...+.+....+++.+++.++.++++|-+ .+.+=+|..+. + ..+
T Consensus 71 ~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~ai~~~kraId~A~eLGa~--~v~v~~G~~g~~~~~~~d 148 (382)
T TIGR02631 71 RRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAE--TYVVWGGREGAEYDGAKD 148 (382)
T ss_pred HHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEEccCCCCCcCccccC
Confidence 455555677899988766521 11 1235666777888888888999998854 55565555332 2 122
Q ss_pred ----HHHHHHHHHHHHHhhCCC-CCCcEEEecCc
Q psy9378 397 ----MNRIAEIINVALDEYFPV-EEGVSIIAEPG 425 (522)
Q Consensus 397 ----~~~~a~~I~~~l~~~~~~-~~~~~li~EPG 425 (522)
++.+.+.++.+.+ +..+ +.+++|.+||=
T Consensus 149 ~~~a~~~~~e~L~~lae-~A~~~G~GV~laLEp~ 181 (382)
T TIGR02631 149 VRAALDRMREALNLLAA-YAEDQGYGLRFALEPK 181 (382)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhCCCcEEEEccC
Confidence 3444444444332 2221 13699999973
No 97
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=74.01 E-value=32 Score=36.86 Aligned_cols=93 Identities=19% Similarity=0.196 Sum_probs=57.5
Q ss_pred CHHHHHHHHhhCCCeEEEEEE----ec----CCC-CCChHHHHHHHHHHHHHHHHHhhcCCCccEEE--EcCCCCCCCCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSF----HV----GSG-CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLD--LGGGYPGYTGY 395 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~Glhf----H~----GS~-~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~Ld--IGGGf~~~~~~ 395 (522)
++.++.+.+++.||.+.++-. |- ||- ..|++....+++.+++.+++++++|-+. |+ +|-|+.-....
T Consensus 70 d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~--I~iW~~DG~~~~g~~ 147 (378)
T TIGR02635 70 DYEELARYAEELGLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKD--ISLWLADGTNYPGQD 147 (378)
T ss_pred CHHHHHHHHHHcCCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCe--EEEecCCcCcCCccc
Confidence 567777778888988886432 32 653 3466777788999999999999998653 34 33444211112
Q ss_pred C----HHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 396 S----MNRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 396 ~----~~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
+ ++.+.+.+.+.. ++. ..++++.+||
T Consensus 148 ~~~~a~~rl~esL~eI~-~~~--~~~v~~~iE~ 177 (378)
T TIGR02635 148 DFRSRKDRLEESLAEVY-EHL--GADMRLLIEY 177 (378)
T ss_pred CHHHHHHHHHHHHHHHH-HhC--cCCCEEEEec
Confidence 3 444455555444 222 2589999976
No 98
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=72.55 E-value=18 Score=39.23 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=55.9
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCC----CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC-CCCHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSG----CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT-GYSMNRIA 401 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~----~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~-~~~~~~~a 401 (522)
++.++.+.+++.++.+.-+..|..-. ..+.+.+...++.+.+-++.+.++|.+.=+++-|-..+... ...++.++
T Consensus 177 ~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~ 256 (413)
T PTZ00372 177 TIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIA 256 (413)
T ss_pred HHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHH
Confidence 56666666777777665555564321 23566677778878777788888886655555454322111 12355666
Q ss_pred HHHHHHHHhhCCCCCCcEEEec
Q psy9378 402 EIINVALDEYFPVEEGVSIIAE 423 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~E 423 (522)
+.|++++++ ..++.|.+|
T Consensus 257 e~L~~~la~----~~gV~IlLE 274 (413)
T PTZ00372 257 DCINKAHEE----TKSVIIVLE 274 (413)
T ss_pred HHHHHHHhC----cCCCEEEEe
Confidence 666665543 345788888
No 99
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=72.31 E-value=6.5 Score=44.81 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=50.3
Q ss_pred CCCcceEEEeccCCCccccccc---------ccCCCCCCCC--cEEEEcCCCcccccCCCCCCCCCCCeEEEEE
Q psy9378 4 RETLVPSSVWGPTCDGLDKVND---------DILLPEMPVG--SWLIYRDMGAYTLPVASTFNGFPIPKVHAVI 66 (522)
Q Consensus 4 ~~~~~~~~i~GptCds~D~l~~---------~~~LP~l~~G--D~l~~~~~GAY~~~~~s~fNg~~~p~~~~~~ 66 (522)
+.++...+|+.=||||.+.+-. ..+||+++.| -+|.|-.+|||=-.++.-.|-|..|.++.|.
T Consensus 483 e~p~~~~~l~DiTCDSDg~i~~fi~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~ 556 (624)
T TIGR01273 483 EKPTRRAVLQDITCDSDGKIDQFIGEQGITSTLPLHELDPDEGYFLGFFLVGAYQEILGDMHNLFGDTSAVRVV 556 (624)
T ss_pred CCccceEEEeccCCCCCCchhccCCCcCccCCccCCCcCCCCCcEEEEEeccHhHHHhccccccCCCCCEEEEE
Confidence 4567889999999999995542 2567776655 5788999999999999999999999776553
No 100
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=71.74 E-value=19 Score=35.95 Aligned_cols=90 Identities=26% Similarity=0.324 Sum_probs=51.3
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC-CCCCHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGS----GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY-TGYSMNRIA 401 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS----~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~-~~~~~~~~a 401 (522)
++.++.+.+++.++.+. +|..- ...+++.+.++++.+++.++.++++|.+.=.+..| ..+.. ....++.+.
T Consensus 46 ~~~~l~~~~~~~gl~ls---~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g-~~~~~~~e~~~~~~~ 121 (273)
T smart00518 46 TAEKFKEALKENNIDVS---VHAPYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPG-SYLKQSKEEALNRII 121 (273)
T ss_pred HHHHHHHHHHHcCCCEE---EECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc-cccCCCHHHHHHHHH
Confidence 56666666777888753 34221 12245667777888888888888888664333333 22111 112244455
Q ss_pred HHHHHHHHhhCCCCCCcEEEecC
Q psy9378 402 EIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~EP 424 (522)
+.+++..++ ..+++|.+|+
T Consensus 122 ~~l~~l~~~----~~gv~l~lEn 140 (273)
T smart00518 122 ESLNEVIDE----TKGVVILLET 140 (273)
T ss_pred HHHHHHHhc----cCCcEEEEec
Confidence 555554442 3568888884
No 101
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=69.69 E-value=47 Score=32.80 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=57.4
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC----CCCHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGS-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT----GYSMNRIA 401 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~----~~~~~~~a 401 (522)
+..++.+.+++.|+.+.++..+.+. -..+.......++..++.++.+.++|.+.-++-.|+...... ...++.+.
T Consensus 46 ~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~ 125 (274)
T COG1082 46 ELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWA 125 (274)
T ss_pred hHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHH
Confidence 3566666777889999998888773 333444455667777777888888885544444444433222 12234455
Q ss_pred HHHHHHHHhhCCCCCCcEEEecC
Q psy9378 402 EIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~EP 424 (522)
+.+.+...-.- ..++.+.+||
T Consensus 126 ~~l~~l~~~a~--~~~i~l~~e~ 146 (274)
T COG1082 126 EALEELAEIAE--ELGIGLALEN 146 (274)
T ss_pred HHHHHHHHHHH--HhCCceEEee
Confidence 54444332211 1367888887
No 102
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.23 E-value=19 Score=36.33 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCCeEEEEEEecCC----CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC--CCCHHHHH
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVGS----GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT--GYSMNRIA 401 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~GS----~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~--~~~~~~~a 401 (522)
+.++.+.+++.++.+..+..|..- ...+.+.+...++.+.+.++.++++|.+ ++.+=.|..... ...++...
T Consensus 48 ~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~i~~A~~lga~--~vv~H~G~~~~~~~e~~~~~~~ 125 (274)
T TIGR00587 48 IDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEELKRCELLGIM--LYNFHPGSALKCSEEEGLDNLI 125 (274)
T ss_pred HHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCCCCCCCHHHHHHHHH
Confidence 333333445556654334444211 1235666677788888877878888755 444434432211 11133334
Q ss_pred HHHHHHHHhhCCCCCCcEEEec--Cc
Q psy9378 402 EIINVALDEYFPVEEGVSIIAE--PG 425 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~E--PG 425 (522)
+.+++.+++ ..+++|.+| ||
T Consensus 126 ~~l~~l~~~----~~~v~l~lEN~~~ 147 (274)
T TIGR00587 126 ESLNVVIKE----TKIVTILLENMAG 147 (274)
T ss_pred HHHHHHHhc----cCCCEEEEEeCCC
Confidence 444444332 245788888 55
No 103
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=68.01 E-value=1.5e+02 Score=32.49 Aligned_cols=67 Identities=12% Similarity=0.265 Sum_probs=31.7
Q ss_pred eEEEEeHHHHHHHHHHHHHhCCCCe-EEeeecCCC------cHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCC
Q psy9378 212 AFYVLDVGEIVRKHEDWKLKLPRVD-PYYAVKCND------SQMVLEVLAALGTGFDCAS---KPISHIRYAAEYGID 279 (522)
Q Consensus 212 P~yV~Dl~~I~~ni~~l~~~lp~~~-i~YAvKAN~------~~~Vlk~L~~~G~GfDvaS---K~~~eL~~A~~~Gv~ 279 (522)
++-..+.+.|.+-++.+.+.+++++ +++. =.|. ...+++.+.+.|+.+.|.+ .+++.++.+.+.|+.
T Consensus 223 ~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~-Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 223 RYRTRSAESVIEEVKYALENFPEVREFFFD-DDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLR 299 (472)
T ss_pred ceEeCCHHHHHHHHHHHHHhcCCCcEEEEe-CCCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCC
Confidence 3444566666666666665543332 2221 1111 1345555555555444443 344445555555554
No 104
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=67.97 E-value=53 Score=29.86 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=39.4
Q ss_pred cccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCC
Q psy9378 320 FGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPG 391 (522)
Q Consensus 320 FGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~ 391 (522)
+|... ...++++.+.+.+.+++|+++..++.. ..+.++.+.+++.+..=..+=+||....
T Consensus 37 LG~~v--p~e~i~~~a~~~~~d~V~lS~~~~~~~----------~~~~~~~~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 37 LGVMT--SQEEFIDAAIETDADAILVSSLYGHGE----------IDCRGLREKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred CCCCC--CHHHHHHHHHHcCCCEEEEcCccccCH----------HHHHHHHHHHHhcCCCCCeEEEECCCCC
Confidence 45544 367888888889999999998887542 1223445556666653235677887644
No 105
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=67.08 E-value=77 Score=31.26 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=19.0
Q ss_pred cCcCCCHHHHHHHHhhC-CCeEEEEEEecCC
Q psy9378 322 CDPISEAPRLLRLAKSL-DLDVVGVSFHVGS 351 (522)
Q Consensus 322 i~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS 351 (522)
+.|+ ++.++++.+++. .-...|+|+|---
T Consensus 172 ~~P~-~v~~li~~l~~~~~~~~~~~H~Hn~~ 201 (265)
T cd03174 172 ATPE-EVAELVKALREALPDVPLGLHTHNTL 201 (265)
T ss_pred cCHH-HHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4555 788888887653 3146678888543
No 106
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=65.84 E-value=1.4e+02 Score=29.44 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCCccEEEEcC----CCCCCCCCCHHHHHHHHHH
Q psy9378 377 GFSMRVLDLGG----GYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 377 G~~l~~LdIGG----Gf~~~~~~~~~~~a~~I~~ 406 (522)
+-.+.+++|-- +.++.-..++.++.+.+.+
T Consensus 197 ~~ri~~vHikD~~~~~~~G~G~id~~~i~~aL~~ 230 (258)
T PRK09997 197 ADKIGHLQIADNPHRGEPGTGEINYDYLFKVIEN 230 (258)
T ss_pred hCcccEEEeCCCCCCCCCCCCcCCHHHHHHHHHH
Confidence 33455555532 2333334567777665544
No 107
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=65.24 E-value=17 Score=29.08 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=45.3
Q ss_pred EEEEcCHHHHHHHhhhCCCCeEEEEEeeCCC--cccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEE
Q psy9378 280 TMTFDNEIELQKVKQFHPTAQLVIRIRCDAE--VAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVS 346 (522)
Q Consensus 280 ~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~--~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Glh 346 (522)
.++|+|..+.-+..+..++..+-.|+-|-.. .+.++.. ..++.+ +...+.+.+++.++.+.|++
T Consensus 5 ~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~a--l~~~~~-d~~~i~~~l~~~~i~~~~iy 70 (73)
T PF11823_consen 5 LITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLA--LRFEPE-DLEKIKEILEENGIEYEGIY 70 (73)
T ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEE--EEEChh-hHHHHHHHHHHCCCCeeEEE
Confidence 4899999999999888777777788876422 1222222 223334 77788888889999999986
No 108
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=64.36 E-value=33 Score=34.39 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCC
Q psy9378 355 DPPVFGRAIYSARQIFDLGNSLGFS 379 (522)
Q Consensus 355 ~~~~~~~ai~~~~~l~~~~~~~G~~ 379 (522)
+++.+.+.++.+++.++.++++|.+
T Consensus 76 ~~~~r~~~~~~~~~~i~~A~~lG~~ 100 (279)
T cd00019 76 DKEKREKSIERLKDEIERCEELGIR 100 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3345555666666666666666644
No 109
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=63.14 E-value=1.7e+02 Score=29.80 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCC-CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEE
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHP-TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVV 343 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~-~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~ 343 (522)
..+.-++.+.+.|+. .+.-..-.++.+...+. +..++++++....-.. .. .+ . .+...++.+-.+|..-+
T Consensus 44 d~e~~v~~v~~~g~d-av~~~~G~~~~~~~~y~~dvplivkl~~~t~l~~---~~---~~-~-~~~~~ve~ai~lgadAV 114 (265)
T COG1830 44 DPENIVAKVAEAGAD-AVAMTPGIARSVHRGYAHDVPLIVKLNGSTSLSP---DP---ND-Q-VLVATVEDAIRLGADAV 114 (265)
T ss_pred CHHHHHHHHHhcCCC-EEEecHhHHhhcCccccCCcCEEEEeccccccCC---Cc---cc-c-eeeeeHHHHHhCCCcEE
Confidence 334566777888887 66778888888877654 7899999986532111 11 11 1 22333444456788999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC
Q psy9378 344 GVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP 390 (522)
Q Consensus 344 GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~ 390 (522)
|.|..+||... .+.++.+.++++.+.++|.++-.--..=|..
T Consensus 115 ~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~ 156 (265)
T COG1830 115 GATVYVGSETE-----REMIENISQVVEDAHELGMPLVAWAYPRGPA 156 (265)
T ss_pred EEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 99999999643 4567777788888899997654444454443
No 110
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=59.75 E-value=1.2e+02 Score=32.17 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=44.3
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCC-eEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHH
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRV-DPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIR 271 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~-~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~ 271 (522)
-|||. +++.+.|++-++.+++.|+-. ..-.++=||| +...++.|++.|+ .+.|-|-.++.++
T Consensus 63 GGTPs-~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 63 GGTPS-LMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CCccc-cCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 36888 678999999999999988632 1234566777 5688999999985 5555565555555
No 111
>PRK06852 aldolase; Validated
Probab=59.62 E-value=2.2e+02 Score=29.57 Aligned_cols=106 Identities=13% Similarity=0.179 Sum_probs=63.6
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccc--cCcCCCHHHHHHHHhh--CCCe
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFG--CDPISEAPRLLRLAKS--LDLD 341 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFG--i~~e~e~~~ll~~~k~--~~L~ 341 (522)
....++.+.+.|+. -.+-+.--+++.....++..++||+|...... ...++.- .-.. .++++++.-.. .|..
T Consensus 61 p~~~i~~~~~~g~d-av~~~~G~l~~~~~~~~~~~lIlkl~~~t~l~--~~~~~~p~~~l~~-sVeeAvrlG~~~~~~Ad 136 (304)
T PRK06852 61 PEHLFRIASKAKIG-VFATQLGLIARYGMDYPDVPYLVKLNSKTNLV--KTSQRDPLSRQLL-DVEQVVEFKENSGLNIL 136 (304)
T ss_pred HHHHHHHHHhcCCC-EEEeCHHHHHhhccccCCCcEEEEECCCCCcC--CcccCCcccccee-cHHHHHhcCCccCCCce
Confidence 34467777787887 44566777777655566778999999543211 1001110 1111 34555543222 3366
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9378 342 VVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSM 380 (522)
Q Consensus 342 l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l 380 (522)
-+|+|..+||.. + .+.++.+.++.+.+.+.|+++
T Consensus 137 AV~v~v~~Gs~~---E--~~ml~~l~~v~~ea~~~GlPl 170 (304)
T PRK06852 137 GVGYTIYLGSEY---E--SEMLSEAAQIIYEAHKHGLIA 170 (304)
T ss_pred EEEEEEecCCHH---H--HHHHHHHHHHHHHHHHhCCcE
Confidence 777777788642 2 456777788888899999764
No 112
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=59.47 E-value=51 Score=34.85 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhh-hCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEE
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQ-FHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGV 345 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~-~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Gl 345 (522)
...++.+.+.|+. -.+-+.--+++... ...+..++||+|...... . .++ ....+..-++.+-++|-.-+|+
T Consensus 94 ~~~i~~a~~~g~d-Av~~~~G~l~~~~~~~~~~iplIlkln~~t~l~--~-~~~----~~~~l~~sVedAlrLGAdAV~~ 165 (348)
T PRK09250 94 ENIVKLAIEAGCN-AVASTLGVLEAVARKYAHKIPFILKLNHNELLS--Y-PNT----YDQALTASVEDALRLGAVAVGA 165 (348)
T ss_pred HHHHHHHHhcCCC-EEEeCHHHHHhccccccCCCCEEEEeCCCCCCC--C-CCC----CcccceecHHHHHHCCCCEEEE
Confidence 4567788888887 44666777777443 335678999999543210 0 011 1112223344555678888999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccE--EEEcCCC
Q psy9378 346 SFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRV--LDLGGGY 389 (522)
Q Consensus 346 hfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~--LdIGGGf 389 (522)
|..+||.. + .+.++.+.++++.+.+.|+++=. .--|+.+
T Consensus 166 tvy~Gs~~---E--~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i 206 (348)
T PRK09250 166 TIYFGSEE---S--RRQIEEISEAFEEAHELGLATVLWSYLRNSAF 206 (348)
T ss_pred EEecCCHH---H--HHHHHHHHHHHHHHHHhCCCEEEEecccCccc
Confidence 99999742 1 45677788888889999976432 2335555
No 113
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.92 E-value=52 Score=34.34 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=63.0
Q ss_pred EcCHHHHHHHhhhCCCCeE-EEEEeeCCCc-ccCCCCCccccCcCC----CHHHHHHHHhhCCCeEEEEEEecCCCC---
Q psy9378 283 FDNEIELQKVKQFHPTAQL-VIRIRCDAEV-AQCQLGMKFGCDPIS----EAPRLLRLAKSLDLDVVGVSFHVGSGC--- 353 (522)
Q Consensus 283 vDS~~EL~~i~~~~~~~~V-~LRIn~~~~~-~~~~~~sKFGi~~e~----e~~~ll~~~k~~~L~l~GlhfH~GS~~--- 353 (522)
..|+..|.++.+...+-.| +.||..+.-. ++ ...+|-.... ++.++-+.+++.|++ |++|.+-.+
T Consensus 48 ~~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~as---h~~~~~~~~~~~~~~l~~iG~~a~~~~iR---LS~Hp~qfi~Ln 121 (312)
T TIGR00629 48 KANLRDTMKTLHWNIGHGIPFYRFSSSIFPFAS---HPDVGYDLVTFAQKELREIGELAKTHQHR---LTFHPGQFTQFT 121 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEecCccccCcCc---CchhhhhHHHHHHHHHHHHHHHHHHcCeE---EEECCCccccCC
Confidence 3555666666554322222 4688765311 11 1123332211 233333444556754 689988743
Q ss_pred -CChHHHHHHHHHHHHHHHHHhhcCCC-------ccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 354 -GDPPVFGRAIYSARQIFDLGNSLGFS-------MRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 354 -~~~~~~~~ai~~~~~l~~~~~~~G~~-------l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
.+++.....++....-.+.+..+|.. .-+|++||.+ ++....++.+.+.+.+
T Consensus 122 S~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~-gdk~~alerf~~n~~~ 181 (312)
T TIGR00629 122 SPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAF-GNKDTTLARFHQNYKR 181 (312)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCC-CCHHHHHHHHHHHHHH
Confidence 35666667777766666666667743 3357888887 5554446666555544
No 114
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=58.90 E-value=1.5e+02 Score=29.55 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=19.5
Q ss_pred CcCCCHHHHHHHHhh-CCCeEEEEEEecCCC
Q psy9378 323 DPISEAPRLLRLAKS-LDLDVVGVSFHVGSG 352 (522)
Q Consensus 323 ~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~ 352 (522)
.|+ ++.++++.+++ .++ -.|+|+|---+
T Consensus 166 ~P~-~v~~lv~~l~~~~~~-~l~~H~Hn~~G 194 (259)
T cd07939 166 DPF-TTYELIRRLRAATDL-PLEFHAHNDLG 194 (259)
T ss_pred CHH-HHHHHHHHHHHhcCC-eEEEEecCCCC
Confidence 455 78888888765 454 46999995443
No 115
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=58.29 E-value=9.1 Score=24.88 Aligned_cols=17 Identities=47% Similarity=0.796 Sum_probs=15.2
Q ss_pred CCCceEEeecCCCceee
Q psy9378 131 PEDQIYVLDRGNDAVHV 147 (522)
Q Consensus 131 ~~~~~~~~~~~~~~~~~ 147 (522)
++++|||.|++|..|.+
T Consensus 11 ~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 11 SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp TTSEEEEEECCCTEEEE
T ss_pred CCCCEEEEECCCCEEEE
Confidence 78999999999988765
No 116
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=57.32 E-value=27 Score=37.86 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC--CccEEEEcCCCCCCC-CCCHHHHHHHHHHHHHhhCCCCCCcEEEecCcce
Q psy9378 356 PPVFGRAIYSARQIFDLGNSLGF--SMRVLDLGGGYPGYT-GYSMNRIAEIINVALDEYFPVEEGVSIIAEPGRY 427 (522)
Q Consensus 356 ~~~~~~ai~~~~~l~~~~~~~G~--~l~~LdIGGGf~~~~-~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~ 427 (522)
.+.|.+++.+= +.......+. .++.|-+|||-|.-- +.+++.+.+.|++.+. ....+..+++-+-|+..
T Consensus 64 ~~~Y~~aL~~E--i~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~-~~~~~~EitiE~nP~~~ 135 (416)
T COG0635 64 VDEYLDALLEE--IELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELFN-DLDPDAEITIEANPGTV 135 (416)
T ss_pred HHHHHHHHHHH--HHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhcc-cCCCCceEEEEeCCCCC
Confidence 34465554332 2222333444 589999999987642 2235555555555443 11112345666669844
No 117
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=56.94 E-value=82 Score=35.83 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCCeEEe--------eecCC---CcHHHHHHHHHcCC-eEEEE---c---CCHHHHHHHHHcCCCE---
Q psy9378 222 VRKHEDWKLKLPRVDPYY--------AVKCN---DSQMVLEVLAALGT-GFDCA---S---KPISHIRYAAEYGIDT--- 280 (522)
Q Consensus 222 ~~ni~~l~~~lp~~~i~Y--------AvKAN---~~~~Vlk~L~~~G~-GfDva---S---K~~~eL~~A~~~Gv~~--- 280 (522)
.++++++++.+|++++.- +.+-. -....++...+.|+ .|-+. + .....++.|.+.|...
T Consensus 64 ~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~ 143 (593)
T PRK14040 64 WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGT 143 (593)
T ss_pred HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEE
Confidence 678888888888765421 11111 12344556666664 23333 2 3335677778888641
Q ss_pred EE--EcCHHHHHHHhhhC---CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEEEEEEecCCCC
Q psy9378 281 MT--FDNEIELQKVKQFH---PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVVGVSFHVGSGC 353 (522)
Q Consensus 281 i~--vDS~~EL~~i~~~~---~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~~ 353 (522)
+. .+..+.++.+.+.+ ....+ =+|..-+. -=.+.|. ++.++++.+++ .++. +|+|+|--++.
T Consensus 144 i~yt~~p~~~~~~~~~~a~~l~~~Ga-d~i~i~Dt--------~G~l~P~-~~~~lv~~lk~~~~~p-i~~H~Hnt~Gl 211 (593)
T PRK14040 144 LSYTTSPVHTLQTWVDLAKQLEDMGV-DSLCIKDM--------AGLLKPY-AAYELVSRIKKRVDVP-LHLHCHATTGL 211 (593)
T ss_pred EEEeeCCccCHHHHHHHHHHHHHcCC-CEEEECCC--------CCCcCHH-HHHHHHHHHHHhcCCe-EEEEECCCCch
Confidence 22 23323333333322 11110 12332211 1135676 88999998876 3554 68999976653
No 118
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=56.43 E-value=64 Score=34.33 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=56.1
Q ss_pred EEeHHHHHHHHHHHHHhCCCCeEEeeecCCC-cHHHHHHHHHcCC-----eEEEEc-------C------CH----HHHH
Q psy9378 215 VLDVGEIVRKHEDWKLKLPRVDPYYAVKCND-SQMVLEVLAALGT-----GFDCAS-------K------PI----SHIR 271 (522)
Q Consensus 215 V~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~-~~~Vlk~L~~~G~-----GfDvaS-------K------~~----~eL~ 271 (522)
-.+.+.+.+.++.+++.+|.+. +++++ +..-++.|+++|+ ++|..+ . +. +-++
T Consensus 134 ~~~~e~l~~~i~~Ik~~~p~i~----i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~ 209 (371)
T PRK09240 134 KVGVDYIRRALPIAREYFSSVS----IEVQPLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPE 209 (371)
T ss_pred CCCHHHHHHHHHHHHHhCCCce----eccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHH
Confidence 3578999999999998887543 45555 5677899999996 455544 1 22 3556
Q ss_pred HHHHcCCCEEEE-------cCHHHH-------HHHhhhCCCCeEEEEEee
Q psy9378 272 YAAEYGIDTMTF-------DNEIEL-------QKVKQFHPTAQLVIRIRC 307 (522)
Q Consensus 272 ~A~~~Gv~~i~v-------DS~~EL-------~~i~~~~~~~~V~LRIn~ 307 (522)
.|.+.|+..+++ ++.++. +.|...++...+.|+++.
T Consensus 210 ~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~ 259 (371)
T PRK09240 210 RAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPR 259 (371)
T ss_pred HHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCc
Confidence 777888752321 333333 333335566667777653
No 119
>PRK09989 hypothetical protein; Provisional
Probab=56.12 E-value=89 Score=30.97 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=47.2
Q ss_pred HHHHHHHHhhCCCeEEEEEEecC-----CC--CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCC----
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVG-----SG--CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYS---- 396 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~G-----S~--~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~---- 396 (522)
..++.+.+++.||.+.++|.-.+ .. ..++....+..+...+.++.++++|.+ .|.+..|..- ...+
T Consensus 42 ~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg~~--~v~v~~g~~~-~~~~~~~~ 118 (258)
T PRK09989 42 TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALALNCE--QVHVMAGVVP-AGEDAERY 118 (258)
T ss_pred HHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhCcC--EEEECccCCC-CCCCHHHH
Confidence 44566667789999998875432 10 112222223344455566677777744 5555444311 1122
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 397 MNRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 397 ~~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
++...+.+++..+ ++. ..++++.+||
T Consensus 119 ~~~~~~~l~~l~~-~a~-~~gv~l~lE~ 144 (258)
T PRK09989 119 RAVFIDNLRYAAD-RFA-PHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHH-HHH-hcCCEEEEEe
Confidence 2333344433322 221 3678999998
No 120
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=55.12 E-value=60 Score=32.18 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=47.6
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCC-------CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCC-CCCCCC--CC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGC-------GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG-YPGYTG--YS 396 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~-------~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGG-f~~~~~--~~ 396 (522)
+..++.+.+++.||++...|...+... .++....+..+.+.++++.++++|.+ .|.+..| .+.... ..
T Consensus 41 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~--~i~~~~g~~~~~~~~~~~ 118 (258)
T PRK09997 41 DIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNK--KINCLVGKTPAGFSSEQI 118 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCCCCCCHHHH
Confidence 455666677789999877544333211 11111122334455666677777754 4544333 322211 11
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcEEEecC
Q psy9378 397 MNRIAEIINVALDEYFPVEEGVSIIAEP 424 (522)
Q Consensus 397 ~~~~a~~I~~~l~~~~~~~~~~~li~EP 424 (522)
++.+.+.+++..+.. . ..+++|.+||
T Consensus 119 ~~~~~~~l~~l~~~a-~-~~Gv~l~lE~ 144 (258)
T PRK09997 119 HATLVENLRYAANML-M-KEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHHH-H-HcCCEEEEEe
Confidence 344444444433221 1 3579999998
No 121
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=53.94 E-value=2.7e+02 Score=30.71 Aligned_cols=15 Identities=20% Similarity=-0.048 Sum_probs=7.3
Q ss_pred EeHHHHHHHHHHHHH
Q psy9378 216 LDVGEIVRKHEDWKL 230 (522)
Q Consensus 216 ~Dl~~I~~ni~~l~~ 230 (522)
-+.+.+.+.++.+.+
T Consensus 222 rs~e~Vv~Ei~~l~~ 236 (497)
T TIGR02026 222 RDPKKFVDEIEWLVR 236 (497)
T ss_pred CCHHHHHHHHHHHHH
Confidence 344555555555443
No 122
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=52.33 E-value=2.6e+02 Score=28.01 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=20.7
Q ss_pred cCcCCCHHHHHHHHhhC-CCeEEEEEEecCC
Q psy9378 322 CDPISEAPRLLRLAKSL-DLDVVGVSFHVGS 351 (522)
Q Consensus 322 i~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS 351 (522)
+.|+ ++.++++.+++. +....|+|+|---
T Consensus 167 ~~P~-~v~~lv~~l~~~~~~~~l~~H~Hn~~ 196 (263)
T cd07943 167 MLPD-DVRERVRALREALDPTPVGFHGHNNL 196 (263)
T ss_pred cCHH-HHHHHHHHHHHhCCCceEEEEecCCc
Confidence 3566 888999988763 5446799999543
No 123
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=49.93 E-value=4e+02 Score=29.55 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=39.1
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCC-e-EEeeecC-CC---cHHHHHHHHHcCC---eEEEEcCCHHHHH
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRV-D-PYYAVKC-ND---SQMVLEVLAALGT---GFDCASKPISHIR 271 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~-~-i~YAvKA-N~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~ 271 (522)
|||.. ++.+.+.+-++.+++.+|+. . .-+.+-+ +| +...++.|++.|+ .+-+-|-+++.++
T Consensus 227 GTPt~-L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk 296 (488)
T PRK08207 227 GTPTS-LTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLK 296 (488)
T ss_pred CCccC-CCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHH
Confidence 67764 47888888888888887531 1 1345554 43 6889999999985 2333334445554
No 124
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=49.89 E-value=1.3e+02 Score=30.16 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=59.4
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCC--CChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGC--GDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEII 404 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~--~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I 404 (522)
.+...++.++..|.+.+. +|.|+.. ...+.+...++.++++.+.+++.|+.+.+=+.++-+ .....+++++.+.+
T Consensus 86 ~~~~~i~~A~~lG~~~v~--~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~-~~~~~t~~~~~~li 162 (279)
T cd00019 86 RLKDEIERCEELGIRLLV--FHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQG-NEIGSSFEELKEII 162 (279)
T ss_pred HHHHHHHHHHHcCCCEEE--ECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC-CCCCCCHHHHHHHH
Confidence 456666777778887654 5677643 234566677788888888888899887777766653 11223455544433
Q ss_pred HHHHHhhCCCCCCcEEEecCcceeec
Q psy9378 405 NVALDEYFPVEEGVSIIAEPGRYYVA 430 (522)
Q Consensus 405 ~~~l~~~~~~~~~~~li~EPGR~lva 430 (522)
. +.- ..+.+.+.+-+|-.+..
T Consensus 163 ~----~v~-~~~~~g~~lD~~h~~~~ 183 (279)
T cd00019 163 D----LIK-EKPRVGVCIDTCHIFAA 183 (279)
T ss_pred H----hcC-CCCCeEEEEEhhhHHhc
Confidence 3 221 01457788888876643
No 125
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=49.48 E-value=2.6e+02 Score=30.54 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=44.7
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHHHH
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIRYA 273 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~~A 273 (522)
-|||.+ ++.+.|.+-++.+++.|+ ....-.++-+|+ +.+.++.+++.|+ .+.|-|-.++.++..
T Consensus 122 GGTPs~-L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l 192 (449)
T PRK09058 122 GGTPTA-LSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRA 192 (449)
T ss_pred CCcccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHh
Confidence 368875 788899999999999886 222345677777 6789999999985 445555545555543
No 126
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=48.53 E-value=1.3e+02 Score=31.87 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=35.6
Q ss_pred EEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCCh-HHH-----HHHHHHHHHHHHHHhh
Q psy9378 302 VIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDP-PVF-----GRAIYSARQIFDLGNS 375 (522)
Q Consensus 302 ~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~-~~~-----~~ai~~~~~l~~~~~~ 375 (522)
.|||||+. +|-..+ .+.++++.+|+.++.+. +-...||-..+. +.| ...++.+.+.++.+++
T Consensus 104 ~iRINPGN----------ig~~~~-~v~~vv~~ak~~~ipIR-IGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~ 171 (360)
T PRK00366 104 ALRINPGN----------IGKRDE-RVREVVEAAKDYGIPIR-IGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEE 171 (360)
T ss_pred EEEECCCC----------CCchHH-HHHHHHHHHHHCCCCEE-EecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 46888864 344334 67778888888776543 344455532111 111 1234555556666777
Q ss_pred cCCC
Q psy9378 376 LGFS 379 (522)
Q Consensus 376 ~G~~ 379 (522)
+|+.
T Consensus 172 ~~f~ 175 (360)
T PRK00366 172 LGFD 175 (360)
T ss_pred CCCC
Confidence 7653
No 127
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=47.61 E-value=13 Score=39.17 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=29.1
Q ss_pred ceEEEeccCCCccccccccc-CCCCCCCCcEEEEcCC
Q psy9378 8 VPSSVWGPTCDGLDKVNDDI-LLPEMPVGSWLIYRDM 43 (522)
Q Consensus 8 ~~~~i~GptCds~D~l~~~~-~LP~l~~GD~l~~~~~ 43 (522)
..+.|.|+.| +|.+.-++ .+|++++||++.|-..
T Consensus 298 ~~~~ivG~v~--mD~~~vdv~~~~~~~~GD~v~l~g~ 332 (367)
T cd00430 298 KRAPIVGRVC--MDQTMVDVTDIPDVKVGDEVVLFGR 332 (367)
T ss_pred EEcceeceee--ccEEEEECCCCCCCCCCCEEEEEcC
Confidence 5678999999 89999887 7789999999977643
No 128
>PRK08227 autoinducer 2 aldolase; Validated
Probab=47.61 E-value=1.3e+02 Score=30.74 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEE
Q psy9378 268 SHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSF 347 (522)
Q Consensus 268 ~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Glhf 347 (522)
..+..... |+. -.+-+.--+++.....+...++||++...... . -...+.+..-++.+-++|..-+++|.
T Consensus 46 ~~~~~i~~-~~d-a~~~~~G~~~~~~~~~~~~~lil~ls~~t~~~--~------~~~~~~l~~sVeeAvrlGAdAV~~~v 115 (264)
T PRK08227 46 INIAPLFP-YAD-VLMCTRGILRSVVPPATNKPVVLRASGGNSIL--K------ELSNEAVAVDMEDAVRLNACAVAAQV 115 (264)
T ss_pred HHHHHHhh-cCC-EEEeChhHHHhcccccCCCcEEEEEcCCCCCC--C------CCCcccceecHHHHHHCCCCEEEEEE
Confidence 44555555 676 44556777777555556678999999543211 0 00111222223445557888899999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCc
Q psy9378 348 HVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSM 380 (522)
Q Consensus 348 H~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l 380 (522)
.+||.. + .+.++.+.++.+.+.+.|+++
T Consensus 116 ~~Gs~~---E--~~~l~~l~~v~~ea~~~G~Pl 143 (264)
T PRK08227 116 FIGSEY---E--HQSIKNIIQLVDAGLRYGMPV 143 (264)
T ss_pred ecCCHH---H--HHHHHHHHHHHHHHHHhCCcE
Confidence 999742 2 456777778888889999764
No 129
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=47.16 E-value=1.7e+02 Score=31.70 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=58.7
Q ss_pred HHHHHHHHhhCCCeEEEEEEe----------c---CC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCC
Q psy9378 328 APRLLRLAKSLDLDVVGVSFH----------V---GS-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYT 393 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH----------~---GS-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~ 393 (522)
..++-+.+++.||.+.|+-.- - || ...|++...++++.+++..++.+++|-+.-.|=+|=|+-.+-
T Consensus 100 ~~elk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~gDG~~yP~ 179 (412)
T TIGR02629 100 PKELKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKALGSKALTVWIGDGSNFPG 179 (412)
T ss_pred HHHHHHHHHHcCCccceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCcC
Confidence 344445667778877765322 1 44 234667778889999998999999997665777788874222
Q ss_pred CCC----HHHHHHHHHHHHHhhCCCCCCcEEEe-----cCc
Q psy9378 394 GYS----MNRIAEIINVALDEYFPVEEGVSIIA-----EPG 425 (522)
Q Consensus 394 ~~~----~~~~a~~I~~~l~~~~~~~~~~~li~-----EPG 425 (522)
..+ ++.+.+.+.+..+.. + .+.++.+ |||
T Consensus 180 Q~~~~~~~~rl~esL~eI~~~~-p--d~~k~~iEyKpfEP~ 217 (412)
T TIGR02629 180 QSNFTRAFERYLDAMKAVYAGL-P--DDWKLFTEHKMYEPA 217 (412)
T ss_pred ccchHHHHHHHHHHHHHHHhhC-C--ccceEEEecccCCCc
Confidence 222 555666666555442 2 1356644 676
No 130
>PRK08445 hypothetical protein; Provisional
Probab=46.42 E-value=3.2e+02 Score=28.79 Aligned_cols=145 Identities=11% Similarity=0.045 Sum_probs=85.6
Q ss_pred eEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCc------HHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEEEcC
Q psy9378 212 AFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDS------QMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDN 285 (522)
Q Consensus 212 P~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~------~~Vlk~L~~~G~GfDvaSK~~~eL~~A~~~Gv~~i~vDS 285 (522)
..|+++.+.|.+.+++.++. +..+++.+-.-++. ..+++.+.+..-.+.+.+-+..++....+.+-. ..
T Consensus 69 ~~y~l~~eeI~~~~~~a~~~-g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~----~~ 143 (348)
T PRK08445 69 DAYILSFEEIDKKIEELLAI-GGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKI----SI 143 (348)
T ss_pred CCeeCCHHHHHHHHHHHHHc-CCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCC----CH
Confidence 56788999999999998764 33466666556665 667778887764455444446777776664432 23
Q ss_pred HHHHHHHhhhCCCCeE-EEEEeeCCCcccCCCCCcc---ccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHH
Q psy9378 286 EIELQKVKQFHPTAQL-VIRIRCDAEVAQCQLGMKF---GCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR 361 (522)
Q Consensus 286 ~~EL~~i~~~~~~~~V-~LRIn~~~~~~~~~~~sKF---Gi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ 361 (522)
.++|+++.++.-. .+ ++.+...... ...++ +++.+ ++.+.++.+++.|+++.. .+=+|.. ...+.+.+
T Consensus 144 ~e~L~~LkeAGl~-~~~g~glE~~~d~----v~~~~~pk~~t~~-~~i~~i~~a~~~Gi~~~s-g~i~G~~-Et~edr~~ 215 (348)
T PRK08445 144 KEVLERLQAKGLS-SIPGAGAEILSDR----VRDIIAPKKLDSD-RWLEVHRQAHLIGMKSTA-TMMFGTV-ENDEEIIE 215 (348)
T ss_pred HHHHHHHHHcCCC-CCCCCceeeCCHH----HHHhhCCCCCCHH-HHHHHHHHHHHcCCeeee-EEEecCC-CCHHHHHH
Confidence 6788888876432 11 1222211100 01222 67776 888999999999987542 2223433 34455555
Q ss_pred HHHHHHHH
Q psy9378 362 AIYSARQI 369 (522)
Q Consensus 362 ai~~~~~l 369 (522)
-+...+++
T Consensus 216 ~l~~lreL 223 (348)
T PRK08445 216 HWERIRDL 223 (348)
T ss_pred HHHHHHHH
Confidence 44444443
No 131
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=45.13 E-value=2.9e+02 Score=31.51 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCCCeEE--e------eecCCCc---HHHHHHHHHcCCe----EEEEc---CCHHHHHHHHHcCCCEE--
Q psy9378 222 VRKHEDWKLKLPRVDPY--Y------AVKCNDS---QMVLEVLAALGTG----FDCAS---KPISHIRYAAEYGIDTM-- 281 (522)
Q Consensus 222 ~~ni~~l~~~lp~~~i~--Y------AvKAN~~---~~Vlk~L~~~G~G----fDvaS---K~~~eL~~A~~~Gv~~i-- 281 (522)
.++++.+++.+|++++- . ..+.-+. ...++..++.|+. ||... .....++.+.+.|....
T Consensus 63 werl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 63 WSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred HHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEE
Confidence 58889999999865432 1 1222222 2244444555541 12222 33456777777775422
Q ss_pred ---EE---cCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccc-cCcCCCHHHHHHHHhh-CCCeEEEEEEecCCCC
Q psy9378 282 ---TF---DNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFG-CDPISEAPRLLRLAKS-LDLDVVGVSFHVGSGC 353 (522)
Q Consensus 282 ---~v---DS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFG-i~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~~ 353 (522)
+. -+++.+..+.+...+..+ =+|...+. .| +.|. ++.++++.+++ .++. +++|+|--.+.
T Consensus 143 i~yt~sp~~t~e~~~~~ak~l~~~Ga-d~I~IkDt---------aG~l~P~-~v~~lv~alk~~~~ip-i~~H~Hnt~Gl 210 (596)
T PRK14042 143 ICYTTSPVHTLDNFLELGKKLAEMGC-DSIAIKDM---------AGLLTPT-VTVELYAGLKQATGLP-VHLHSHSTSGL 210 (596)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHcCC-CEEEeCCc---------ccCCCHH-HHHHHHHHHHhhcCCE-EEEEeCCCCCc
Confidence 12 223333333322111111 02222211 23 3566 88899988876 4654 59999976653
No 132
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=44.67 E-value=2.4e+02 Score=30.70 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCC-CeEEeeecCCC---cHHHHHHHHHcCC
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPR-VDPYYAVKCND---SQMVLEVLAALGT 258 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~-~~i~YAvKAN~---~~~Vlk~L~~~G~ 258 (522)
|||.+ ++.+.|.+-++.+++.++- ...-.++-+|+ +.+.++.|++.|+
T Consensus 111 GtPs~-l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~ 162 (453)
T PRK09249 111 GTPTF-LSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGF 162 (453)
T ss_pred ccccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCC
Confidence 78875 5889999999999888751 12345566777 5789999999985
No 133
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=44.41 E-value=3.3e+02 Score=28.67 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=41.7
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCC-CeEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHHHH
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPR-VDPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIRYA 273 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~-~~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~~A 273 (522)
|||.. ++.+.|++-++.+++.++. .. .++=+|| +...++.+++.|+ .+-+-|-+++.|+..
T Consensus 65 GTPs~-L~~~~l~~ll~~i~~~~~~~~e--itiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l 132 (353)
T PRK05904 65 GTPNC-LNDQLLDILLSTIKPYVDNNCE--FTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQL 132 (353)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhcCCCCe--EEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc
Confidence 67764 7888888888888888753 33 3566777 6788999999985 333444445555544
No 134
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=44.38 E-value=4e+02 Score=28.13 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=39.3
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHH
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIR 271 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~ 271 (522)
|||.+ ++.+.+.+-++.+++.++ .....+++-+|+ +.+.++.|++.|+ .+.+-|-+++.++
T Consensus 68 GTPs~-l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~ 135 (375)
T PRK05628 68 GTPSL-LGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLA 135 (375)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 57764 566778887888877764 112346677777 5789999999885 3344444455444
No 135
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=43.92 E-value=4.1e+02 Score=28.45 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=40.7
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCC-eEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHH
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRV-DPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIR 271 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~-~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~ 271 (522)
|||..+ +.+.+++-++.+++.++-. ..-.++=+|| +...++.|++.|+ .+.|-|-.++.++
T Consensus 75 GTps~l-~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~ 142 (400)
T PRK07379 75 GTPSLL-SVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLA 142 (400)
T ss_pred CccccC-CHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHH
Confidence 688765 8999999999999887511 1234455666 6788999999985 4444443344443
No 136
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=43.23 E-value=2.1e+02 Score=28.19 Aligned_cols=101 Identities=9% Similarity=0.141 Sum_probs=58.2
Q ss_pred cHHHHHHHH-HcCCeEEEEc--CCHHHHHHHHHcCCCEEEEcC-----HHHHHHHhhhCCCCeEEEEEeeCCC-cccCCC
Q psy9378 246 SQMVLEVLA-ALGTGFDCAS--KPISHIRYAAEYGIDTMTFDN-----EIELQKVKQFHPTAQLVIRIRCDAE-VAQCQL 316 (522)
Q Consensus 246 ~~~Vlk~L~-~~G~GfDvaS--K~~~eL~~A~~~Gv~~i~vDS-----~~EL~~i~~~~~~~~V~LRIn~~~~-~~~~~~ 316 (522)
+..+++.+. ..+.-+.+.. .+.++++.+++.|+..+++.| .+.++++.+.+...++.+-|+.-.+ .-....
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 334454454 4466666666 889999999999998776654 5666777777666677777765432 101111
Q ss_pred CCcc-ccCcCCCHHHHHHHHhhCCCeEEEEEEecCC
Q psy9378 317 GMKF-GCDPISEAPRLLRLAKSLDLDVVGVSFHVGS 351 (522)
Q Consensus 317 ~sKF-Gi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS 351 (522)
+.+. ++ ++.++++++.+.++.=. |-+.+..
T Consensus 141 w~~~~~~----~~~~~~~~~~~~g~~~i-i~tdi~~ 171 (229)
T PF00977_consen 141 WQESSGI----DLEEFAKRLEELGAGEI-ILTDIDR 171 (229)
T ss_dssp TTEEEEE----EHHHHHHHHHHTT-SEE-EEEETTT
T ss_pred ccccCCc----CHHHHHHHHHhcCCcEE-EEeeccc
Confidence 2222 33 45677777777775422 4444433
No 137
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=42.34 E-value=2.2e+02 Score=29.59 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=30.4
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCC-eEEeeecC---CC---cHHHHHHHHHcCCe
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRV-DPYYAVKC---ND---SQMVLEVLAALGTG 259 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~-~i~YAvKA---N~---~~~Vlk~L~~~G~G 259 (522)
|.|+. .+-+.|.+-++++++ .+.+ ++....++ |+ +..+++.|.+.|..
T Consensus 145 GDPl~-~~~~~L~~ll~~l~~-i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~ 199 (321)
T TIGR03822 145 GDPLV-LSPRRLGDIMARLAA-IDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT 199 (321)
T ss_pred CCccc-CCHHHHHHHHHHHHh-CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc
Confidence 78884 355667777777765 4433 34444453 44 56888888888843
No 138
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.32 E-value=2.4e+02 Score=27.67 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=87.1
Q ss_pred CeEEEEeHHHHHHHHHHHHHh-CCCCeEEeeecC------CCcHHHHHHHHHcC--CeEEEEcCC-HHHHHHHHHcCCCE
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLK-LPRVDPYYAVKC------NDSQMVLEVLAALG--TGFDCASKP-ISHIRYAAEYGIDT 280 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~-lp~~~i~YAvKA------N~~~~Vlk~L~~~G--~GfDvaSK~-~~eL~~A~~~Gv~~ 280 (522)
++...++.+...+-++.+.+. .+.+.+.+.... .....+++.+.+.+ ..+-+-+.. .++++.+.+.|+..
T Consensus 11 ~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~ 90 (265)
T cd03174 11 SEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDE 90 (265)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCE
Confidence 344445777777777777654 223344333332 34556778887776 444333333 77888888888763
Q ss_pred E--EEc----------------CHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccc--cCcCCCHHHHHHHHhhCCC
Q psy9378 281 M--TFD----------------NEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFG--CDPISEAPRLLRLAKSLDL 340 (522)
Q Consensus 281 i--~vD----------------S~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFG--i~~e~e~~~ll~~~k~~~L 340 (522)
+ .++ +++++....+.+++..+-++++... -|+ .+++ ++.++++.+.+.|.
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~---------~~~~~~~~~-~l~~~~~~~~~~g~ 160 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED---------AFGCKTDPE-YVLEVAKALEEAGA 160 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe---------ecCCCCCHH-HHHHHHHHHHHcCC
Confidence 3 222 2333333333344444556666532 134 6676 88888888888899
Q ss_pred eEEEEEEecCCCCCChHHHHHHHHHHHH
Q psy9378 341 DVVGVSFHVGSGCGDPPVFGRAIYSARQ 368 (522)
Q Consensus 341 ~l~GlhfH~GS~~~~~~~~~~ai~~~~~ 368 (522)
..+.+.=..|.. .|+.+.+.++..++
T Consensus 161 ~~i~l~Dt~G~~--~P~~v~~li~~l~~ 186 (265)
T cd03174 161 DEISLKDTVGLA--TPEEVAELVKALRE 186 (265)
T ss_pred CEEEechhcCCc--CHHHHHHHHHHHHH
Confidence 888888889995 46655555554443
No 139
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=42.07 E-value=4.3e+02 Score=27.69 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=40.5
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHHHH
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIRYA 273 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~~A 273 (522)
|||.. ++.+.|.+-++.+++.++ ....-+++=+|+ +...++.|++.|+ .+.+-|-.++.++..
T Consensus 60 GtPs~-l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l 129 (360)
T TIGR00539 60 GTPNT-LSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL 129 (360)
T ss_pred Cchhc-CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHh
Confidence 67864 567777777777777664 222345677777 6788999999985 344444445555433
No 140
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.03 E-value=2.4e+02 Score=25.42 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=34.3
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP 390 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~ 390 (522)
..+++++.+++.+.+++|++...++. . +.+.++++.+++.|..--.+=+||..+
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~~~~-------~---~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLAGGH-------L---TLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCchhhh-------H---HHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 35678888888899999998665432 2 223455666677775422344566664
No 141
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.87 E-value=3.5e+02 Score=26.52 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHcCCCEEEE
Q psy9378 265 KPISHIRYAAEYGIDTMTF 283 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~v 283 (522)
.+++|+..|.+.|+..+-+
T Consensus 117 ~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 117 MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 3455555555555554433
No 142
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=40.89 E-value=2.9e+02 Score=28.70 Aligned_cols=128 Identities=14% Similarity=0.076 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCEEEEcCHHHHHHHhhhC-----------CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHh
Q psy9378 268 SHIRYAAEYGIDTMTFDNEIELQKVKQFH-----------PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAK 336 (522)
Q Consensus 268 ~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~-----------~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k 336 (522)
+.++-.++-|+..+-++....+..+++.. .+.+|++-......+ ...-|- ...+++..++
T Consensus 147 eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG-----~tl~Gq----~~~a~~~~l~ 217 (311)
T COG0646 147 EQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSG-----RTLSGQ----TIEAFLNSLE 217 (311)
T ss_pred HHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCc-----eecCCC----cHHHHHHHhh
Confidence 45555678899888888777776665542 135666666655321 122344 4456777778
Q ss_pred hCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q psy9378 337 SLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDE 410 (522)
Q Consensus 337 ~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~ 410 (522)
..++..+|+-|+.|.. ..+..++...+..+..-..-.+-.+-|+.|+= ..|+.+.+.++..+....++
T Consensus 218 ~~~~~~vGlNCa~Gp~-----~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~-~~Y~~~p~~~a~~~~~f~~~ 285 (311)
T COG0646 218 HLGPDAVGLNCALGPD-----EMRPHLRELSRIADAFVSVYPNAGLPNAFGER-AVYDLTPEYMAEALAEFAEE 285 (311)
T ss_pred ccCCcEEeeccccCHH-----HHHHHHHHHHhccCceEEEeCCCCCCcccCCc-cccCCCHHHHHHHHHHHHHh
Confidence 8899999999999862 23333333222211110110112222333331 12556778888777765544
No 143
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=40.85 E-value=4e+02 Score=29.53 Aligned_cols=117 Identities=20% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCCCeEEe-eecCC-------Cc---HHHHHHHHHcCC-eEEEEc------CCHHHHHHHHHcCCCE---
Q psy9378 222 VRKHEDWKLKLPRVDPYY-AVKCN-------DS---QMVLEVLAALGT-GFDCAS------KPISHIRYAAEYGIDT--- 280 (522)
Q Consensus 222 ~~ni~~l~~~lp~~~i~Y-AvKAN-------~~---~~Vlk~L~~~G~-GfDvaS------K~~~eL~~A~~~Gv~~--- 280 (522)
.++++++++.+|+.++.- ..-.| +. ...++..++.|+ -|-+.+ .....++.+.+.|...
T Consensus 72 werlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~ 151 (468)
T PRK12581 72 WERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLC 151 (468)
T ss_pred HHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 478888898888654421 11112 11 234555556664 233333 3345566677777541
Q ss_pred --EEEcCHHHHHHHhhhCC-----CCeEEEEEeeCCCcccCCCCCccc-cCcCCCHHHHHHHHhhC-CCeEEEEEEecCC
Q psy9378 281 --MTFDNEIELQKVKQFHP-----TAQLVIRIRCDAEVAQCQLGMKFG-CDPISEAPRLLRLAKSL-DLDVVGVSFHVGS 351 (522)
Q Consensus 281 --i~vDS~~EL~~i~~~~~-----~~~V~LRIn~~~~~~~~~~~sKFG-i~~e~e~~~ll~~~k~~-~L~l~GlhfH~GS 351 (522)
.+.+....++.+.+.+. ++. +|...+. .| +.|. ++.++++.+++. ++. +|+|+|--+
T Consensus 152 i~yt~sp~~t~~y~~~~a~~l~~~Gad---~I~IkDt---------aG~l~P~-~v~~Lv~alk~~~~~p-i~~H~Hnt~ 217 (468)
T PRK12581 152 IAYTTSPVHTLNYYLSLVKELVEMGAD---SICIKDM---------AGILTPK-AAKELVSGIKAMTNLP-LIVHTHATS 217 (468)
T ss_pred EEEEeCCcCcHHHHHHHHHHHHHcCCC---EEEECCC---------CCCcCHH-HHHHHHHHHHhccCCe-EEEEeCCCC
Confidence 23333333333333221 111 2332221 23 4566 889999988763 554 599999766
Q ss_pred C
Q psy9378 352 G 352 (522)
Q Consensus 352 ~ 352 (522)
+
T Consensus 218 G 218 (468)
T PRK12581 218 G 218 (468)
T ss_pred c
Confidence 5
No 144
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=40.79 E-value=4e+02 Score=26.95 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCeEEeeecC-----------CCcHHHHHHHHHcCCeEEEEc-------CCHHHHHHHHHcCCCEE--
Q psy9378 222 VRKHEDWKLKLPRVDPYYAVKC-----------NDSQMVLEVLAALGTGFDCAS-------KPISHIRYAAEYGIDTM-- 281 (522)
Q Consensus 222 ~~ni~~l~~~lp~~~i~YAvKA-----------N~~~~Vlk~L~~~G~GfDvaS-------K~~~eL~~A~~~Gv~~i-- 281 (522)
.+.++++++..++.++..-..+ |-....++...+.|+..--.+ +..+.++.|.+.|....
T Consensus 58 ~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 58 WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEE
Q ss_pred ------EEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEEEEEEecCCCCC
Q psy9378 282 ------TFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVVGVSFHVGSGCG 354 (522)
Q Consensus 282 ------~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~~~ 354 (522)
.--+.+.+..+.+...+.. .-||...+..+ ...|+ ++.++++.+++ .+ .-.|+|+|---+.
T Consensus 138 i~~~~~~~~~~~~~~~~~~~~~~~G-a~~i~l~DT~G--------~~~P~-~v~~lv~~l~~~~~-~~l~~H~Hnd~Gl- 205 (275)
T cd07937 138 ICYTGSPVHTLEYYVKLAKELEDMG-ADSICIKDMAG--------LLTPY-AAYELVKALKKEVG-LPIHLHTHDTSGL- 205 (275)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCC--------CCCHH-HHHHHHHHHHHhCC-CeEEEEecCCCCh-
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 355 DPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 355 ~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
++..+...++...+. ++..+.-+|++-+... .++++..+..
T Consensus 206 -------A~aN~laA~~aGa~~-vd~sv~GlG~~aGN~~---~E~l~~~L~~ 246 (275)
T cd07937 206 -------AVATYLAAAEAGVDI-VDTAISPLSGGTSQPS---TESMVAALRG 246 (275)
T ss_pred -------HHHHHHHHHHhCCCE-EEEecccccCCcCChh---HHHHHHHHHc
No 145
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=39.63 E-value=3.3e+02 Score=27.82 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=52.6
Q ss_pred cHHHHHHH-HHcCC-eEEEEc--CCHHHH---HHHHHc--------CCCEE-EEcCHHHHHHHhhhCCCCeEEEEEeeCC
Q psy9378 246 SQMVLEVL-AALGT-GFDCAS--KPISHI---RYAAEY--------GIDTM-TFDNEIELQKVKQFHPTAQLVIRIRCDA 309 (522)
Q Consensus 246 ~~~Vlk~L-~~~G~-GfDvaS--K~~~eL---~~A~~~--------Gv~~i-~vDS~~EL~~i~~~~~~~~V~LRIn~~~ 309 (522)
-..+++.| .+.|+ -+|+.| .++++. ....+. ++..+ -+++...+++..+...+ . |++-...
T Consensus 21 K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~g~~-~--i~i~~~~ 97 (280)
T cd07945 21 KLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSAGAK-V--LNLLTKG 97 (280)
T ss_pred HHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHCCCC-E--EEEEEeC
Confidence 34567765 55675 677766 455332 222221 23221 35777777776665332 2 3333322
Q ss_pred CcccCCCCCccccCcCCC----HHHHHHHHhhCCCeEEEEEEecCCC
Q psy9378 310 EVAQCQLGMKFGCDPISE----APRLLRLAKSLDLDVVGVSFHVGSG 352 (522)
Q Consensus 310 ~~~~~~~~sKFGi~~e~e----~~~ll~~~k~~~L~l~GlhfH~GS~ 352 (522)
+ ......+++.+.+ + +.++++.+++.|+++..--.++++.
T Consensus 98 S--~~h~~~~~~~t~~-e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 98 S--LKHCTEQLRKTPE-EHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred C--HHHHHHHHCcCHH-HHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 1 1112355677665 4 3455666777888766555566654
No 146
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=39.31 E-value=3.1e+02 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=18.9
Q ss_pred CcCCCHHHHHHHHhhC-CC--eEEEEEEecCC
Q psy9378 323 DPISEAPRLLRLAKSL-DL--DVVGVSFHVGS 351 (522)
Q Consensus 323 ~~e~e~~~ll~~~k~~-~L--~l~GlhfH~GS 351 (522)
.|+ ++.++++.+++. +- -..|+|+|-.-
T Consensus 170 ~P~-~v~~lv~~l~~~~~~~~i~l~~H~Hn~~ 200 (268)
T cd07940 170 TPE-EFGELIKKLKENVPNIKVPISVHCHNDL 200 (268)
T ss_pred CHH-HHHHHHHHHHHhCCCCceeEEEEecCCc
Confidence 455 888888888763 31 24589999543
No 147
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=38.65 E-value=2.5e+02 Score=28.79 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=35.8
Q ss_pred CeEEEEeHHHHHHHHHHHHHh-CCCCeE--------EeeecCCCcHHHHHHHHHcCCeEEEEc--CCHHHHHHHHHcCCC
Q psy9378 211 DAFYVLDVGEIVRKHEDWKLK-LPRVDP--------YYAVKCNDSQMVLEVLAALGTGFDCAS--KPISHIRYAAEYGID 279 (522)
Q Consensus 211 tP~yV~Dl~~I~~ni~~l~~~-lp~~~i--------~YAvKAN~~~~Vlk~L~~~G~GfDvaS--K~~~eL~~A~~~Gv~ 279 (522)
+|-..++.+...+-++.+.++ ++.+++ +.+++ . ..++++.+.+.. +..+.. ...++++.|++.|+.
T Consensus 18 ~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~-d-~~e~~~~l~~~~-~~~~~~l~~~~~~ie~A~~~g~~ 94 (287)
T PRK05692 18 NEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA-D-AAEVMAGIQRRP-GVTYAALTPNLKGLEAALAAGAD 94 (287)
T ss_pred CcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc-c-HHHHHHhhhccC-CCeEEEEecCHHHHHHHHHcCCC
Confidence 344456777766666666553 122222 22222 1 246666665431 222222 457788888888877
Q ss_pred EE
Q psy9378 280 TM 281 (522)
Q Consensus 280 ~i 281 (522)
.+
T Consensus 95 ~v 96 (287)
T PRK05692 95 EV 96 (287)
T ss_pred EE
Confidence 44
No 148
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.54 E-value=2e+02 Score=28.25 Aligned_cols=75 Identities=13% Similarity=-0.006 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-CCHHHHHHHHHcCCCEE-EEcCHHHHHHHhhhC
Q psy9378 220 EIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-KPISHIRYAAEYGIDTM-TFDNEIELQKVKQFH 296 (522)
Q Consensus 220 ~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-K~~~eL~~A~~~Gv~~i-~vDS~~EL~~i~~~~ 296 (522)
.-.+.++++++.+|+..+--..+.+. .-++...+.|+.|-++. -.++-++.|.+.++..+ -+-+..|+....+..
T Consensus 52 ~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~G 128 (212)
T PRK05718 52 AALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSELMLGMELG 128 (212)
T ss_pred cHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCC
Confidence 34567788888888877777777776 45788888999888888 66688888899898755 678888888777664
No 149
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=37.95 E-value=4.2e+02 Score=28.12 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=43.1
Q ss_pred EEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC--cHHHHHHHHHcC--CeEEEEc-------CCHHHHHHHHHcCCCE
Q psy9378 213 FYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND--SQMVLEVLAALG--TGFDCAS-------KPISHIRYAAEYGIDT 280 (522)
Q Consensus 213 ~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~--~~~Vlk~L~~~G--~GfDvaS-------K~~~eL~~A~~~Gv~~ 280 (522)
=|++|++-+.+.+.+..+.-. ++..+------| -|.+.++++++- -|+++.| .+.+.+++..++|++.
T Consensus 138 dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdR 217 (414)
T COG2100 138 DYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDR 217 (414)
T ss_pred ceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCce
Confidence 388899999888887765321 222221111111 234444444332 4788888 5556666666777765
Q ss_pred E--EEcCHHH
Q psy9378 281 M--TFDNEIE 288 (522)
Q Consensus 281 i--~vDS~~E 288 (522)
| ++||+++
T Consensus 218 iNlSv~aLDp 227 (414)
T COG2100 218 INLSVDALDP 227 (414)
T ss_pred EEeecccCCH
Confidence 4 4566654
No 150
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.26 E-value=4.7e+02 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=19.7
Q ss_pred cCcCCCHHHHHHHHhh-CCCeEEEEEEecCCC
Q psy9378 322 CDPISEAPRLLRLAKS-LDLDVVGVSFHVGSG 352 (522)
Q Consensus 322 i~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~ 352 (522)
..|+ ++.++++.+++ .+ -..|+|+|--.+
T Consensus 167 ~~P~-~v~~li~~l~~~~~-~~l~~H~Hnd~G 196 (363)
T TIGR02090 167 LTPQ-KMEELIKKLKENVK-LPISVHCHNDFG 196 (363)
T ss_pred cCHH-HHHHHHHHHhcccC-ceEEEEecCCCC
Confidence 3555 78888888865 35 357899995443
No 151
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.75 E-value=3.8e+02 Score=27.49 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHhhhC-CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCC
Q psy9378 287 IELQKVKQFH-PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSG 352 (522)
Q Consensus 287 ~EL~~i~~~~-~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~ 352 (522)
+-++.+.+.. ++..|++|+++... ...|.+.+ ++.++++.+.+.++. .||+|.|..
T Consensus 196 eii~avr~~~g~d~~i~vris~~~~-------~~~g~~~~-e~~~la~~l~~~G~d--~i~vs~g~~ 252 (327)
T cd02803 196 EIVAAVREAVGPDFPVGVRLSADDF-------VPGGLTLE-EAIEIAKALEEAGVD--ALHVSGGSY 252 (327)
T ss_pred HHHHHHHHHcCCCceEEEEechhcc-------CCCCCCHH-HHHHHHHHHHHcCCC--EEEeCCCCC
Confidence 3445555543 56799999998642 12356676 788888888877864 566666654
No 152
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=36.21 E-value=3.4e+02 Score=27.15 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=62.5
Q ss_pred cHHHHHHHHHcCCeEEEE----c------------------CCHHHHHHHHHcCCC-EEEEcCHHHHHHHhhhCCCC-eE
Q psy9378 246 SQMVLEVLAALGTGFDCA----S------------------KPISHIRYAAEYGID-TMTFDNEIELQKVKQFHPTA-QL 301 (522)
Q Consensus 246 ~~~Vlk~L~~~G~GfDva----S------------------K~~~eL~~A~~~Gv~-~i~vDS~~EL~~i~~~~~~~-~V 301 (522)
.+.+|+.|+..|++--+. . ...+.|+.|.+++.. +..|+|.+|.+...++..++ ..
T Consensus 103 ~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eAqa~~~aGadiiv~ 182 (276)
T COG5564 103 MVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEAQAMTKAGADIIVA 182 (276)
T ss_pred HHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHHHHHHHcCcceeee
Confidence 567888888888632221 1 334567788887764 46799999999998875432 11
Q ss_pred EEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh--CCCeEEEEEEecCCCCCChHH
Q psy9378 302 VIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS--LDLDVVGVSFHVGSGCGDPPV 358 (522)
Q Consensus 302 ~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~--~~L~l~GlhfH~GS~~~~~~~ 358 (522)
.+-++++ +.-+.|-|.+.. ++.++++.+.+ .++.-.=|-.-.|.-+..|+.
T Consensus 183 hmg~ttg-----G~Igar~~~Sl~-~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~d 235 (276)
T COG5564 183 HMGLTTG-----GLIGARSALSLA-DCVELIELAAEAARGVRKDVIPLCHGGPISMPED 235 (276)
T ss_pred ccccccc-----ceeccccccCHH-HHHHHHHHHHHHHhhhhhceeeeccCCCcCCchh
Confidence 1222222 112466677776 88888877643 355332233333444666653
No 153
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=36.12 E-value=5.9e+02 Score=28.99 Aligned_cols=119 Identities=17% Similarity=0.092 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCCCeEEeeec-CCC----------cHHHHHHHHHcCC-e---EEEEc---CCHHHHHHHHHcCCCE-EE
Q psy9378 222 VRKHEDWKLKLPRVDPYYAVK-CND----------SQMVLEVLAALGT-G---FDCAS---KPISHIRYAAEYGIDT-MT 282 (522)
Q Consensus 222 ~~ni~~l~~~lp~~~i~YAvK-AN~----------~~~Vlk~L~~~G~-G---fDvaS---K~~~eL~~A~~~Gv~~-i~ 282 (522)
.++++++++..|++++.-=.. .|. ....++...+.|+ . |+..| .....++.|.++|... .+
T Consensus 58 ~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 58 WERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred HHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
Confidence 567777777777655432212 121 2234455555664 1 22233 3344566777777642 11
Q ss_pred ----Ec---CHHHHHHHhhhCC--CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEEEEEEecCCC
Q psy9378 283 ----FD---NEIELQKVKQFHP--TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVVGVSFHVGSG 352 (522)
Q Consensus 283 ----vD---S~~EL~~i~~~~~--~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~ 352 (522)
.+ +.+.+..+.+... .+. +|...+.. =...|. ++.++++.+++ .++. .|+|+|--++
T Consensus 138 i~~t~~p~~~~~~~~~~~~~~~~~Gad---~I~i~Dt~--------G~~~P~-~v~~lv~~lk~~~~~p-i~~H~Hnt~G 204 (582)
T TIGR01108 138 ISYTTSPVHTLETYLDLAEELLEMGVD---SICIKDMA--------GILTPK-AAYELVSALKKRFGLP-VHLHSHATTG 204 (582)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCC---EEEECCCC--------CCcCHH-HHHHHHHHHHHhCCCc-eEEEecCCCC
Confidence 11 2344444333221 121 22222111 134566 88999998876 4644 6899997665
Q ss_pred C
Q psy9378 353 C 353 (522)
Q Consensus 353 ~ 353 (522)
.
T Consensus 205 l 205 (582)
T TIGR01108 205 M 205 (582)
T ss_pred c
Confidence 3
No 154
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=35.93 E-value=5.1e+02 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=21.4
Q ss_pred ccCcCCCHHHHHHHHhhCCCeEEEEEEecCC
Q psy9378 321 GCDPISEAPRLLRLAKSLDLDVVGVSFHVGS 351 (522)
Q Consensus 321 Gi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS 351 (522)
|++.+ +..++++.+++.|+. +..++=+|-
T Consensus 151 g~t~~-~~~~ai~~~~~~Gi~-v~~~~i~G~ 179 (313)
T TIGR01210 151 GSTFE-DFIRAAELARKYGAG-VKAYLLFKP 179 (313)
T ss_pred CCCHH-HHHHHHHHHHHcCCc-EEEEEEecC
Confidence 45666 888889989989997 455666664
No 155
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=35.91 E-value=2e+02 Score=30.58 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=34.7
Q ss_pred cHHHHHHHHHcCCeEEEEc-CCHHHHHHHHHcCCCEEEEcCHHHHHHHhh
Q psy9378 246 SQMVLEVLAALGTGFDCAS-KPISHIRYAAEYGIDTMTFDNEIELQKVKQ 294 (522)
Q Consensus 246 ~~~Vlk~L~~~G~GfDvaS-K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~ 294 (522)
...+++.+.+.|-.+.-+- .+.++++.|+++||..||+++.-.......
T Consensus 238 p~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~ 287 (347)
T PRK13399 238 PQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGA 287 (347)
T ss_pred CHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHH
Confidence 3456666666664443222 668999999999999999999776655543
No 156
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.90 E-value=3e+02 Score=29.20 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=19.9
Q ss_pred HHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCCCEE
Q psy9378 247 QMVLEVLAAL-GTGFDCASKPISHIRYAAEYGIDTM 281 (522)
Q Consensus 247 ~~Vlk~L~~~-G~GfDvaSK~~~eL~~A~~~Gv~~i 281 (522)
.++++.+.+. +..+-+-....++++.|++.|+..+
T Consensus 103 ~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v 138 (347)
T PLN02746 103 KDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEE
Confidence 3566666552 3322222245778888888887644
No 157
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=35.54 E-value=5.6e+02 Score=27.08 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=69.0
Q ss_pred EEcCHHHHHHHhhhC---CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHH
Q psy9378 282 TFDNEIELQKVKQFH---PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPV 358 (522)
Q Consensus 282 ~vDS~~EL~~i~~~~---~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~ 358 (522)
++-+.++|++|.+.. +...+.+-.+|+. ++ .+.++.+++.|++- +.+|-|..+.+.
T Consensus 70 s~l~~~~l~~ll~~i~~~~~~eit~E~~P~~------------~~-----~~~l~~l~~~G~nr----islGvQS~~~~~ 128 (370)
T PRK06294 70 SLVPPALIQDILKTLEAPHATEITLEANPEN------------LS-----ESYIRALALTGINR----ISIGVQTFDDPL 128 (370)
T ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEEeCCCC------------CC-----HHHHHHHHHCCCCE----EEEccccCCHHH
Confidence 446777777776543 2234444444331 11 35566777777652 356666666554
Q ss_pred HHHH-----HHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCC-CCcEEEecCccee
Q psy9378 359 FGRA-----IYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVE-EGVSIIAEPGRYY 428 (522)
Q Consensus 359 ~~~a-----i~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~-~~~~li~EPGR~l 428 (522)
.... .+.+.+.++.+++.|+.---+|+==|+|+. +.+++.+.+..+++- -+.. .-..+.+|||..+
T Consensus 129 L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq---t~~~~~~~l~~~~~l-~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 129 LKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ---SLSDFIVDLHQAITL-PITHISLYNLTIDPHTSF 200 (370)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC---CHHHHHHHHHHHHcc-CCCeEEEeeeEecCCChH
Confidence 4321 334555666777888764457777888875 466776666665532 1211 1235678998544
No 158
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=35.51 E-value=5.5e+02 Score=29.28 Aligned_cols=121 Identities=20% Similarity=0.130 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCeEEeee-cCCC----------cHHHHHHHHHcCCe----EEEEc---CCHHHHHHHHHcCCCEE
Q psy9378 220 EIVRKHEDWKLKLPRVDPYYAV-KCND----------SQMVLEVLAALGTG----FDCAS---KPISHIRYAAEYGIDTM 281 (522)
Q Consensus 220 ~I~~ni~~l~~~lp~~~i~YAv-KAN~----------~~~Vlk~L~~~G~G----fDvaS---K~~~eL~~A~~~Gv~~i 281 (522)
...++++++++.+|++++.--. -.|. ....++...+.|+. |+..| .....++.|.++|....
T Consensus 61 dp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 140 (592)
T PRK09282 61 DPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQ 140 (592)
T ss_pred cHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEE
Confidence 4467888888888875542111 1111 22345566666652 33344 23345677777786421
Q ss_pred -----EEc---CHHHHHHHhhhCC--CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CCCeEEEEEEecC
Q psy9378 282 -----TFD---NEIELQKVKQFHP--TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LDLDVVGVSFHVG 350 (522)
Q Consensus 282 -----~vD---S~~EL~~i~~~~~--~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~L~l~GlhfH~G 350 (522)
+.. +++.+..+.+... .+. +|...+. -=++.|. ++.++++.+++ .++ .+|+|+|--
T Consensus 141 ~~i~~t~~p~~t~~~~~~~a~~l~~~Gad---~I~i~Dt--------~G~~~P~-~~~~lv~~lk~~~~~-pi~~H~Hnt 207 (592)
T PRK09282 141 GTISYTTSPVHTIEKYVELAKELEEMGCD---SICIKDM--------AGLLTPY-AAYELVKALKEEVDL-PVQLHSHCT 207 (592)
T ss_pred EEEEeccCCCCCHHHHHHHHHHHHHcCCC---EEEECCc--------CCCcCHH-HHHHHHHHHHHhCCC-eEEEEEcCC
Confidence 112 2333333332211 122 2222211 1135666 88999998876 364 469999976
Q ss_pred CCC
Q psy9378 351 SGC 353 (522)
Q Consensus 351 S~~ 353 (522)
++.
T Consensus 208 ~Gl 210 (592)
T PRK09282 208 SGL 210 (592)
T ss_pred CCc
Confidence 653
No 159
>PRK08508 biotin synthase; Provisional
Probab=35.02 E-value=1.9e+02 Score=29.31 Aligned_cols=174 Identities=16% Similarity=0.088 Sum_probs=88.6
Q ss_pred EEE-EeHHHHHHHHHHHHHhCCCCeEEe--eecCCCc------HHHHHHHHHcCCeEEE-Ec---CCHHHHHHHHHcCCC
Q psy9378 213 FYV-LDVGEIVRKHEDWKLKLPRVDPYY--AVKCNDS------QMVLEVLAALGTGFDC-AS---KPISHIRYAAEYGID 279 (522)
Q Consensus 213 ~yV-~Dl~~I~~ni~~l~~~lp~~~i~Y--AvKAN~~------~~Vlk~L~~~G~GfDv-aS---K~~~eL~~A~~~Gv~ 279 (522)
-|- ++++.|.+.+++.++. .-.++.+ +-+..+. ..+++.+.+.+.++.+ +| .+.+.++...+.|+.
T Consensus 36 ~y~~~s~eeI~~~a~~a~~~-g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld 114 (279)
T PRK08508 36 RYKRKDIEQIVQEAKMAKAN-GALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIF 114 (279)
T ss_pred cccCCCHHHHHHHHHHHHHC-CCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCC
Confidence 343 7999999988887653 2234443 3332221 3556666666545543 44 667888888888886
Q ss_pred EEEEc--CHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChH
Q psy9378 280 TMTFD--NEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPP 357 (522)
Q Consensus 280 ~i~vD--S~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~ 357 (522)
.++.+ +-+ +++|+. .=|.+.+ +..+.++.+++.|+++.. ++-+|-+. +.+
T Consensus 115 ~~~~~lEt~~------~~~~~i-------------------~~~~~~~-~~l~~i~~a~~~Gi~v~s-g~I~GlGE-t~e 166 (279)
T PRK08508 115 SYNHNLETSK------EFFPKI-------------------CTTHTWE-ERFQTCENAKEAGLGLCS-GGIFGLGE-SWE 166 (279)
T ss_pred EEcccccchH------HHhcCC-------------------CCCCCHH-HHHHHHHHHHHcCCeecc-eeEEecCC-CHH
Confidence 55542 211 111110 0023344 555666677777775443 44455432 333
Q ss_pred HHHHHHHHHHHHHHHHhhcC---CCccEEEEcCCCCCC-CCCCHHHHHHHHHHHHHhhCCCCCCcEEEecCcc
Q psy9378 358 VFGRAIYSARQIFDLGNSLG---FSMRVLDLGGGYPGY-TGYSMNRIAEIINVALDEYFPVEEGVSIIAEPGR 426 (522)
Q Consensus 358 ~~~~ai~~~~~l~~~~~~~G---~~l~~LdIGGGf~~~-~~~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR 426 (522)
...+.+. .+++++ +++.++.-.-|.+.. ...+.+++.+.+. ...-++ +...|-+-+||
T Consensus 167 d~~~~l~-------~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iA-v~Rl~l---p~~~i~~~~gr 228 (279)
T PRK08508 167 DRISFLK-------SLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVR-LAKEAL---PNARLMVAGGR 228 (279)
T ss_pred HHHHHHH-------HHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHH-HHHHHC---CCceeeecCCh
Confidence 3333222 223333 334455555555432 2345555555442 122233 35677777888
No 160
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=34.89 E-value=3.2e+02 Score=27.19 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=89.2
Q ss_pred CccccCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc-------CCHHHHHHHH
Q psy9378 202 YPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS-------KPISHIRYAA 274 (522)
Q Consensus 202 l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS-------K~~~eL~~A~ 274 (522)
..+.++.++-|.++++.+.+... ++...+ ..+|..|..-...+.+...+.|+..-+.. .....+..+.
T Consensus 57 a~~~a~~lgi~~~ii~~~~~~~~---~~~n~~--~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~ 131 (252)
T TIGR00268 57 AIIIAKEIGVNHEFVKIDKMINP---FRANVE--ERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVK 131 (252)
T ss_pred HHHHHHHcCCCEEEEEcHHHHHH---HHhCCC--cccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHH
Confidence 33344677899999999876543 332222 23444444433344555556665322221 1111233333
Q ss_pred HcCCCEEEEc---CHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCc--cccCcCCCHHHHHHH----HhhCCCeEEEE
Q psy9378 275 EYGIDTMTFD---NEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMK--FGCDPISEAPRLLRL----AKSLDLDVVGV 345 (522)
Q Consensus 275 ~~Gv~~i~vD---S~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sK--FGi~~e~e~~~ll~~----~k~~~L~l~Gl 345 (522)
+.++...-.+ +-+|+..+++..- |-+- +.+...+ +.+| +|.....+....++. ++..|+.-.-+
T Consensus 132 ~~~~~~PL~~~~l~K~eIr~la~~~g-----l~~~-~~ps~~C-l~sr~~~g~~it~~~l~~v~~~E~~l~~~g~~~~rv 204 (252)
T TIGR00268 132 EFNGVSPWAEFGITKKEIREIAKSLG-----ISFP-DKPSEAC-LASRFPFGREIDEEKLKMVDEAEEVLRNAGVGQVRV 204 (252)
T ss_pred HcCCCCcchhcCCCHHHHHHHHHHcC-----CCcc-CCCCCCc-eEeecCCCCcCCHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 4454334333 6788888876531 1100 0011111 1233 353332122222322 34467776777
Q ss_pred EEecCCC--CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 346 SFHVGSG--CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 346 hfH~GS~--~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
-+|-+.. ..+++.+...++....+.+.++++|++.-.||+-|
T Consensus 205 r~~~~~a~ie~~~~~~~~~~~~~~~i~~~~~~~gf~~v~ldl~g 248 (252)
T TIGR00268 205 RNYDNLAVIEVPEDELSKLLNEAEEVRDKFKDIGFRKVLIDLEG 248 (252)
T ss_pred EecCCeEEEEECHHHHHHHHhhHHHHHHHHHHcCCCeEEEccCC
Confidence 7774433 23556777666665556678899999888888876
No 161
>PRK13774 formimidoylglutamase; Provisional
Probab=34.56 E-value=1.2e+02 Score=31.41 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH-----HHHHhh-hCC-CCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE-----LQKVKQ-FHP-TAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLR 333 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E-----L~~i~~-~~~-~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~ 333 (522)
.+.++.+++.+.|+..+..+.+.+ ++.+.+ +.. ...|.|-++.+.-. +. .......|+++. |+.++++
T Consensus 194 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~aPGtgtP~pgGLt~~-e~l~il~ 272 (311)
T PRK13774 194 NTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAFAPGVSAPAVLGLYPH-TVLELAK 272 (311)
T ss_pred CCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhhCCCCCCCCCCCCCHH-HHHHHHH
Confidence 356788889999987665555433 222222 211 23688888876321 11 234577899998 9999988
Q ss_pred HHhhCCCeEEEEEEe
Q psy9378 334 LAKSLDLDVVGVSFH 348 (522)
Q Consensus 334 ~~k~~~L~l~GlhfH 348 (522)
.+.+. -+++|+.+=
T Consensus 273 ~l~~~-~~v~g~Div 286 (311)
T PRK13774 273 RIIPS-DKVSSVSIA 286 (311)
T ss_pred HHHhc-CCEEEEEEE
Confidence 87443 256676654
No 162
>PRK07328 histidinol-phosphatase; Provisional
Probab=34.21 E-value=4.6e+02 Score=26.22 Aligned_cols=146 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred eHHHHHHHHHHHHHhCCCCeEEeeecCCC----cHHHHHHHHHcCCeEEEEc----------------------------
Q psy9378 217 DVGEIVRKHEDWKLKLPRVDPYYAVKCND----SQMVLEVLAALGTGFDCAS---------------------------- 264 (522)
Q Consensus 217 Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~----~~~Vlk~L~~~G~GfDvaS---------------------------- 264 (522)
+...-.+.++++++.++++++...+=++- ...+-+.+.+....+-++|
T Consensus 61 ~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~~~~~~~~~~~l~~~~~D~vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (269)
T PRK07328 61 ELPFYVSEVERLRARFPDLYVRLGIEADYHPGTEEFLERLLEAYPFDYVIGSVHYLGAWGFDNPDFVAEYEERDLDELYR 140 (269)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEecccCCcHHHHHHHHHhCCCCeEEEEEeecCCcCCCChhHHHHHhcCCHHHHHH
Q ss_pred ---------------CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHH
Q psy9378 265 ---------------KPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAP 329 (522)
Q Consensus 265 ---------------K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~ 329 (522)
.-..++.+..+.+.. ...+..+.++++.+...+..+.|-||.. +-|.|+...--..
T Consensus 141 ~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~-~~~~~~~~~~~il~~~~~~g~~lEiNt~--------~~r~~~~~~yp~~ 211 (269)
T PRK07328 141 RYFALVEQAARSGLFDIIGHPDLIKKFGHR-PREDLTELYEEALDVIAAAGLALEVNTA--------GLRKPVGEIYPSP 211 (269)
T ss_pred HHHHHHHHHHHcCCCCEeeCccHHHHcCCC-CchhHHHHHHHHHHHHHHcCCEEEEEch--------hhcCCCCCCCCCH
Q ss_pred HHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCC
Q psy9378 330 RLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFS 379 (522)
Q Consensus 330 ~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~ 379 (522)
++++++++.|+.++ +||....++.....++.+.++ +++.|++
T Consensus 212 ~il~~~~~~g~~it-----igSDAH~~~~vg~~~~~a~~~---l~~~G~~ 253 (269)
T PRK07328 212 ALLRACRERGIPVV-----LGSDAHRPEEVGFGFAEALAL---LKEVGYT 253 (269)
T ss_pred HHHHHHHHcCCCEE-----EeCCCCCHHHHhccHHHHHHH---HHHcCCc
No 163
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=33.54 E-value=2.7e+02 Score=30.43 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=55.4
Q ss_pred EeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCC-----eEEEEcCCHHHHHHHHHcCCCEEEEcCHHHHH
Q psy9378 216 LDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGT-----GFDCASKPISHIRYAAEYGIDTMTFDNEIELQ 290 (522)
Q Consensus 216 ~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~-----GfDvaSK~~~eL~~A~~~Gv~~i~vDS~~EL~ 290 (522)
.+.+.+.+-++.+++. ++.......++-++.+++.|++.|+ |++..| ++.|+ .+..|.. .+ ++.
T Consensus 258 ~~~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s--~~~L~-~~~K~~~---~~---~~~ 326 (472)
T TIGR03471 258 DDKPRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLVGYESGD--QQILK-NIKKGLT---VE---IAR 326 (472)
T ss_pred CCHHHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCC--HHHHH-HhcCCCC---HH---HHH
Confidence 3455555555655542 3333333456778999999999996 344444 55555 4455542 33 333
Q ss_pred HHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcC--CCHHHHHHHHhhCCCeEEE
Q psy9378 291 KVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPI--SEAPRLLRLAKSLDLDVVG 344 (522)
Q Consensus 291 ~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e--~e~~~ll~~~k~~~L~l~G 344 (522)
+..+...+. ++++.... =+|++-+ +++.+.++.+++.+++...
T Consensus 327 ~~i~~~~~~--Gi~v~~~~---------IiGlPget~e~~~~ti~~~~~l~~~~~~ 371 (472)
T TIGR03471 327 RFTRDCHKL--GIKVHGTF---------ILGLPGETRETIRKTIDFAKELNPHTIQ 371 (472)
T ss_pred HHHHHHHHC--CCeEEEEE---------EEeCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 333332222 23444321 1466443 1455666666666655433
No 164
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=33.46 E-value=5.9e+02 Score=26.78 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHHHHHhhCCCeEEEEEEecCCCCCChHHHHH-----HHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHH
Q psy9378 330 RLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR-----AIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEII 404 (522)
Q Consensus 330 ~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~-----ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I 404 (522)
+.++.+++.|++ ++++|-|..+.+.... ..+.+.+.++.+++.|++---+|+==|+|+.. .+++.+.+
T Consensus 109 e~l~~l~~~G~~----rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt---~~~~~~tl 181 (375)
T PRK05628 109 EFFAALRAAGFT----RVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES---DDDWRASL 181 (375)
T ss_pred HHHHHHHHcCCC----EEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC---HHHHHHHH
Confidence 455556666654 3456666555544322 13455566677788887634677777777654 56666655
Q ss_pred HHHHHhhCCCC-CCcEEEecCccee
Q psy9378 405 NVALDEYFPVE-EGVSIIAEPGRYY 428 (522)
Q Consensus 405 ~~~l~~~~~~~-~~~~li~EPGR~l 428 (522)
..+++ .-+.. .-..+.++||.-+
T Consensus 182 ~~~~~-l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 182 DAALE-AGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred HHHHh-cCCCEEEeeeeecCCCChH
Confidence 54443 22211 1123567787544
No 165
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.63 E-value=5.2e+02 Score=27.14 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCeEEe-eecCCCcHHHHHHHHHcCC-eEEEEc------CCHHHHHHHHHcCCCEEE------EcCHH
Q psy9378 222 VRKHEDWKLKLPRVDPYY-AVKCNDSQMVLEVLAALGT-GFDCAS------KPISHIRYAAEYGIDTMT------FDNEI 287 (522)
Q Consensus 222 ~~ni~~l~~~lp~~~i~Y-AvKAN~~~~Vlk~L~~~G~-GfDvaS------K~~~eL~~A~~~Gv~~i~------vDS~~ 287 (522)
.+.++++++..++.++.- .+=...+..=++...+.|+ .+-++. ...+.+++|.++|..... --+.+
T Consensus 65 ~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e 144 (337)
T PRK08195 65 EEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPE 144 (337)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHH
Q ss_pred HHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCC--CeEEEEEEe
Q psy9378 288 ELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLD--LDVVGVSFH 348 (522)
Q Consensus 288 EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~--L~l~GlhfH 348 (522)
++..+.+......+- +|..-+..+ .+.|+ ++.++++.+++.- -.-.|+|+|
T Consensus 145 ~l~~~a~~~~~~Ga~-~i~i~DT~G--------~~~P~-~v~~~v~~l~~~l~~~i~ig~H~H 197 (337)
T PRK08195 145 KLAEQAKLMESYGAQ-CVYVVDSAG--------ALLPE-DVRDRVRALRAALKPDTQVGFHGH 197 (337)
T ss_pred HHHHHHHHHHhCCCC-EEEeCCCCC--------CCCHH-HHHHHHHHHHHhcCCCCeEEEEeC
No 166
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=32.52 E-value=3.4e+02 Score=28.71 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCeEEEEc----------CCHHHHHHHHHcCCC--EEEEcCHHHHHHHhhhCCCCeE----------------------E
Q psy9378 257 GTGFDCAS----------KPISHIRYAAEYGID--TMTFDNEIELQKVKQFHPTAQL----------------------V 302 (522)
Q Consensus 257 G~GfDvaS----------K~~~eL~~A~~~Gv~--~i~vDS~~EL~~i~~~~~~~~V----------------------~ 302 (522)
|.-+-|-| .+.+++....+.|+. .+++.+.+..+.+.++.+..++ .
T Consensus 17 ~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dk 96 (346)
T TIGR00612 17 DAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAK 96 (346)
T ss_pred CCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCe
Q ss_pred EEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHH------HHHHHHHHHHHHhhc
Q psy9378 303 IRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR------AIYSARQIFDLGNSL 376 (522)
Q Consensus 303 LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~------ai~~~~~l~~~~~~~ 376 (522)
|||||+. +|-... +.++++.+|+.++.+. +-...||-..+.-.-.. .++.+.+.+++++++
T Consensus 97 iRINPGN----------ig~~e~--v~~vv~~ak~~~ipIR-IGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~ 163 (346)
T TIGR00612 97 VRINPGN----------IGFRER--VRDVVEKARDHGKAMR-IGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKL 163 (346)
T ss_pred EEECCCC----------CCCHHH--HHHHHHHHHHCCCCEE-EecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHC
Q ss_pred CCCccEEEE
Q psy9378 377 GFSMRVLDL 385 (522)
Q Consensus 377 G~~l~~LdI 385 (522)
|+.=-.|.+
T Consensus 164 ~F~diviS~ 172 (346)
T TIGR00612 164 GFRNVVLSM 172 (346)
T ss_pred CCCcEEEEE
No 167
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=31.94 E-value=1.4e+02 Score=31.76 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=41.5
Q ss_pred EEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCCh-HHH----HHHHHHHHHHHHHHhhc
Q psy9378 302 VIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDP-PVF----GRAIYSARQIFDLGNSL 376 (522)
Q Consensus 302 ~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~-~~~----~~ai~~~~~l~~~~~~~ 376 (522)
.|||||+.-.. .....-|=..+ .+.++++.+|+.++-+ -+-...||-..+. +.| ...++.+.+.+++++++
T Consensus 97 kiRINPGNi~~--~~~~~~g~~~~-~~~~vv~~ake~~ipI-RIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~ 172 (359)
T PF04551_consen 97 KIRINPGNIVD--EFQEELGSIRE-KVKEVVEAAKERGIPI-RIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEEL 172 (359)
T ss_dssp EEEE-TTTSS------SS-SS-HH-HHHHHHHHHHHHT-EE-EEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEECCCcccc--cccccccchHH-HHHHHHHHHHHCCCCE-EEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHC
Confidence 48999985210 00001133244 6788888899888754 3555667743211 111 22356666777888888
Q ss_pred CCCccEEEE
Q psy9378 377 GFSMRVLDL 385 (522)
Q Consensus 377 G~~l~~LdI 385 (522)
|+.=-.+.+
T Consensus 173 ~f~~iviSl 181 (359)
T PF04551_consen 173 GFDDIVISL 181 (359)
T ss_dssp T-GGEEEEE
T ss_pred CCCcEEEEE
Confidence 875445543
No 168
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=31.65 E-value=1e+02 Score=32.33 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=32.0
Q ss_pred CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCC
Q psy9378 298 TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSG 352 (522)
Q Consensus 298 ~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~ 352 (522)
..+|++|+++.... +=|.+++ |..++++.+.+.|+. -||+|.|+.
T Consensus 207 ~~~v~vRis~~d~~-------~~G~~~~-e~~~i~~~l~~~gvD--~i~vs~g~~ 251 (337)
T PRK13523 207 DGPLFVRISASDYH-------PGGLTVQ-DYVQYAKWMKEQGVD--LIDVSSGAV 251 (337)
T ss_pred CCCeEEEecccccC-------CCCCCHH-HHHHHHHHHHHcCCC--EEEeCCCCC
Confidence 35799999986421 1277777 888888888777764 567777763
No 169
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=31.62 E-value=7.1e+02 Score=27.11 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCC-CeEEeeecCCC---cHHHHHHHHHcCC
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPR-VDPYYAVKCND---SQMVLEVLAALGT 258 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~-~~i~YAvKAN~---~~~Vlk~L~~~G~ 258 (522)
|||. +++.+.+++-++.+++.|+- ...-+++=+|+ +.+.++.|++.|+
T Consensus 112 GTPs-~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~ 163 (453)
T PRK13347 112 GTPT-ILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGF 163 (453)
T ss_pred cccc-cCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCC
Confidence 5665 35788888888888887751 12334566776 6789999999884
No 170
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=31.46 E-value=4.6e+02 Score=27.79 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCC
Q psy9378 302 VIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGS 351 (522)
Q Consensus 302 ~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS 351 (522)
.+||||+.- |.. + .+.++++.+++.|+-+. +-...||
T Consensus 98 k~RINPGNi----------g~~-~-~v~~vVe~Ak~~g~piR-IGVN~GS 134 (361)
T COG0821 98 KVRINPGNI----------GFK-D-RVREVVEAAKDKGIPIR-IGVNAGS 134 (361)
T ss_pred eEEECCccc----------CcH-H-HHHHHHHHHHHcCCCEE-EecccCc
Confidence 578888752 221 1 46666666666665432 3344555
No 171
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=31.28 E-value=5.9e+02 Score=26.06 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=90.1
Q ss_pred eEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCC------cHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCCEEEEc
Q psy9378 212 AFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCND------SQMVLEVLAALGTGFDCASKPISHIRYAAE-YGIDTMTFD 284 (522)
Q Consensus 212 P~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~------~~~Vlk~L~~~G~GfDvaSK~~~eL~~A~~-~Gv~~i~vD 284 (522)
+.|.++.+.|.+.+++.++. +-.+++...-.++ -..+++.+.+.+-.+...+.+..|+....+ .|. .
T Consensus 32 ~~~~ls~eeI~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~-----~ 105 (309)
T TIGR00423 32 DAYVLSLEEILEKVKEAVAK-GATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGL-----S 105 (309)
T ss_pred CcccCCHHHHHHHHHHHHHC-CCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCC-----C
Confidence 56788999999999887653 3234554433334 245777777776445544444555544332 333 2
Q ss_pred CHHHHHHHhhhCCCCeEEEEEeeCCCccc-CCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHH
Q psy9378 285 NEIELQKVKQFHPTAQLVIRIRCDAEVAQ-CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAI 363 (522)
Q Consensus 285 S~~EL~~i~~~~~~~~V~LRIn~~~~~~~-~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai 363 (522)
+.+.++++.+..-. .+. -+..+..... ...-.+=+++.+ +..+.++.+++.|+++. .++=+|.. .+.+...+.+
T Consensus 106 ~~e~l~~LkeAGl~-~i~-~~g~E~l~~~~~~~i~~~~~t~~-~~l~~i~~a~~~Gi~~~-s~~iiG~~-Et~ed~~~~l 180 (309)
T TIGR00423 106 IEEVLKRLKKAGLD-SMP-GTGAEILDDSVRRKICPNKLSSD-EWLEVIKTAHRLGIPTT-ATMMFGHV-ENPEHRVEHL 180 (309)
T ss_pred HHHHHHHHHHcCCC-cCC-CCcchhcCHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCCce-eeEEecCC-CCHHHHHHHH
Confidence 35666666664311 010 0000000000 000001134455 77889999999998765 55566654 3555555554
Q ss_pred HHHHHHHHHHhhcC----CCccEEEEcCC-CCCC--CCCCHHHHHHHH
Q psy9378 364 YSARQIFDLGNSLG----FSMRVLDLGGG-YPGY--TGYSMNRIAEII 404 (522)
Q Consensus 364 ~~~~~l~~~~~~~G----~~l~~LdIGGG-f~~~--~~~~~~~~a~~I 404 (522)
..++++-. +..+ +++.++.-|+. +... ...+..+..+.|
T Consensus 181 ~~lr~l~~--~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~i 226 (309)
T TIGR00423 181 LRIRKIQE--KTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVI 226 (309)
T ss_pred HHHHhhch--hhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHH
Confidence 44443311 1122 23344454444 4322 335566665554
No 172
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=31.09 E-value=6.5e+02 Score=26.48 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCC-eEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHH
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRV-DPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIR 271 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~-~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~ 271 (522)
|||. +++.+.|.+-++.+++.++-. ..-+++-+|+ +...++.+++.|+ .+-+-|-+++.++
T Consensus 60 Gtpt-~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~ 127 (377)
T PRK08599 60 GTPT-ALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLK 127 (377)
T ss_pred CCcc-cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 6887 468889999999999987521 1234566777 6799999999985 3333333344444
No 173
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.95 E-value=2e+02 Score=30.23 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEE
Q psy9378 297 PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSF 347 (522)
Q Consensus 297 ~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~Glhf 347 (522)
++..|++|+++.... .=|++.+ +..++++.+.+.|+.++.+|.
T Consensus 214 ~~~~v~~R~s~~~~~-------~~g~~~e-e~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 214 KDFILGYRFSPEEPE-------EPGIRME-DTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred CCceEEEEECccccc-------CCCCCHH-HHHHHHHHHHHcCCCEEEecc
Confidence 467899999986421 1277777 888888888888877665553
No 174
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=30.94 E-value=5.3e+02 Score=27.22 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=19.4
Q ss_pred CcCCCHHHHHHHHhh-CCCeEEEEEEecCCC
Q psy9378 323 DPISEAPRLLRLAKS-LDLDVVGVSFHVGSG 352 (522)
Q Consensus 323 ~~e~e~~~ll~~~k~-~~L~l~GlhfH~GS~ 352 (522)
.|+ ++.++++.+++ .++. .|+|+|--.+
T Consensus 169 ~P~-~v~~lv~~l~~~~~v~-l~~H~HNd~G 197 (365)
T TIGR02660 169 DPF-STYELVRALRQAVDLP-LEMHAHNDLG 197 (365)
T ss_pred CHH-HHHHHHHHHHHhcCCe-EEEEecCCCC
Confidence 455 78888888765 3654 6899995443
No 175
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=30.60 E-value=1.2e+02 Score=32.86 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=32.5
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCC-C-eEEeeecCCC---cHHHHHHHHHcCC
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPR-V-DPYYAVKCND---SQMVLEVLAALGT 258 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~-~-~i~YAvKAN~---~~~Vlk~L~~~G~ 258 (522)
|||.+ ++.+.|.+-++.+++.++- . ..-.++=+|+ +...++.|++.|+
T Consensus 100 GTPs~-l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~ 152 (430)
T PRK08208 100 GTPTL-LNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGV 152 (430)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCC
Confidence 57765 6778888888888777751 1 1234566666 5788888888874
No 176
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.50 E-value=2.5e+02 Score=29.80 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCeEEEEc-CCHHHHHHHHHcCCCEEEEcCHHHHHHHhh
Q psy9378 247 QMVLEVLAALGTGFDCAS-KPISHIRYAAEYGIDTMTFDNEIELQKVKQ 294 (522)
Q Consensus 247 ~~Vlk~L~~~G~GfDvaS-K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~ 294 (522)
..+++.+...|-.+.-+- .+.++++.|+++||..||+++.-.......
T Consensus 239 ~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~ 287 (347)
T PRK09196 239 QELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGA 287 (347)
T ss_pred HHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHH
Confidence 345555555553332222 578999999999999999999766655543
No 177
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.27 E-value=4.8e+02 Score=24.68 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCCeEEeeecCC-CcHHHHHHHHHcCCeEEEEc---C---CHHHHHHHHHcCCCEE-EEcC----HHHH
Q psy9378 222 VRKHEDWKLKLPRVDPYYAVKCN-DSQMVLEVLAALGTGFDCAS---K---PISHIRYAAEYGIDTM-TFDN----EIEL 289 (522)
Q Consensus 222 ~~ni~~l~~~lp~~~i~YAvKAN-~~~~Vlk~L~~~G~GfDvaS---K---~~~eL~~A~~~Gv~~i-~vDS----~~EL 289 (522)
.+.++.+++.+|+..+..-+|.- +....++.+.+.|+-+-... . ..+.++.+.++|+..+ .+-+ .+++
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~ 119 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRA 119 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHH
Confidence 45677788777776677777754 33334777788885433222 1 1456777888888632 1112 3566
Q ss_pred HHHhhhCCCCeEEEEEeeC
Q psy9378 290 QKVKQFHPTAQLVIRIRCD 308 (522)
Q Consensus 290 ~~i~~~~~~~~V~LRIn~~ 308 (522)
+.+.+.. +. .+-++|+
T Consensus 120 ~~~~~~g--~d-~v~~~pg 135 (206)
T TIGR03128 120 KELKELG--AD-YIGVHTG 135 (206)
T ss_pred HHHHHcC--CC-EEEEcCC
Confidence 6655543 23 3455554
No 178
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=30.21 E-value=3e+02 Score=28.74 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=48.1
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCC-eEEeeecCCC------cHHHHHHHHHcCCeEEEEc----------CCHHHHHH
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRV-DPYYAVKCND------SQMVLEVLAALGTGFDCAS----------KPISHIRY 272 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~-~i~YAvKAN~------~~~Vlk~L~~~G~GfDvaS----------K~~~eL~~ 272 (522)
|.|+..-| ..|.+-++++++ ++.+ ++....+++. +..+++.|++.|...-..| ...+-++.
T Consensus 168 GDPLl~~d-~~L~~ll~~L~~-i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~ 245 (331)
T TIGR00238 168 GDPLMAKD-HELEWLLKRLEE-IPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEITEEFAEAMKK 245 (331)
T ss_pred CccccCCH-HHHHHHHHHHHh-cCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhCCHHHHHHHHH
Confidence 67876543 335555555543 3432 4566677652 6688888988886555455 22234444
Q ss_pred HHHcCCCEE--------EEcCHHHHHHHhhhC
Q psy9378 273 AAEYGIDTM--------TFDNEIELQKVKQFH 296 (522)
Q Consensus 273 A~~~Gv~~i--------~vDS~~EL~~i~~~~ 296 (522)
+.+.|+... +.|+.+.+.++.+..
T Consensus 246 L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l 277 (331)
T TIGR00238 246 LRTVNVTLLNQSVLLRGVNDRAQILAKLSIAL 277 (331)
T ss_pred HHHcCCEEEeecceECCcCCCHHHHHHHHHHH
Confidence 456665411 346666666666553
No 179
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=30.11 E-value=2.4e+02 Score=25.80 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=79.0
Q ss_pred cCCCceeeeehhhccCcccccCCCCccCCCCCCCCccccccCCcceEEecCCCCC-CCccccCCccccCCC--CCeEEEE
Q psy9378 140 RGNDAVHVMKSIILSGVPVYNYPDNIRVLPEFQPTISVWKRIPKSLMVYPRTDDM-TQVPVYNYPDNVGMK--EDAFYVL 216 (522)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~l~~~~~~~--~tP~yV~ 216 (522)
+|-|.+.+=-..--.|+||--|- .|-|..--.+.+. +..+.+ +.+..- ...-+..+.+.+.++ ..+..+.
T Consensus 25 ~g~~~iE~Dv~~tkDg~~vv~Hd-----i~tL~e~l~~~~~-~~~i~l-eiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~ 97 (189)
T cd08556 25 AGADGVELDVQLTKDGVLVVIHD-----IPTLEEVLELVKG-GVGLNI-ELKEPTRYPGLEAKVAELLREYGLEERVVVS 97 (189)
T ss_pred cCCCEEEEEeeEcCCCCEEEEcC-----CCCHHHHHHhccc-CcEEEE-EECCCCCchhHHHHHHHHHHHcCCcCCEEEE
Confidence 45555554444444567766665 4444433333332 333333 222111 011123344444554 3666666
Q ss_pred eHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHH-HHHHHcCCeEEEEc---CCHHHHHHHHHcCCCE--EEEcCHHHHH
Q psy9378 217 DVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVL-EVLAALGTGFDCAS---KPISHIRYAAEYGIDT--MTFDNEIELQ 290 (522)
Q Consensus 217 Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vl-k~L~~~G~GfDvaS---K~~~eL~~A~~~Gv~~--i~vDS~~EL~ 290 (522)
+.+. ..++++++..|+.++.+-.......... ......|+-+-..+ ..+..++.+.++|+.. -++++.++++
T Consensus 98 s~~~--~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~g~~v~~wtvn~~~~~~ 175 (189)
T cd08556 98 SFDH--EALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLLTPELVRAAHAAGLKVYVWTVNDPEDAR 175 (189)
T ss_pred eCCH--HHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhCCHHHHHHHHHcCCEEEEEcCCCHHHHH
Confidence 6553 5667778888887777766654443322 13444443211111 4577888888899863 4788888888
Q ss_pred HHhhhC
Q psy9378 291 KVKQFH 296 (522)
Q Consensus 291 ~i~~~~ 296 (522)
.+.+..
T Consensus 176 ~~~~~G 181 (189)
T cd08556 176 RLLALG 181 (189)
T ss_pred HHHHCC
Confidence 887653
No 180
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=29.89 E-value=2.3e+02 Score=29.15 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=46.3
Q ss_pred HHHHHHHHcCC--CEEEEcCHHHHHHHhhhCC--CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHh-hCCC-e
Q psy9378 268 SHIRYAAEYGI--DTMTFDNEIELQKVKQFHP--TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAK-SLDL-D 341 (522)
Q Consensus 268 ~eL~~A~~~Gv--~~i~vDS~~EL~~i~~~~~--~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k-~~~L-~ 341 (522)
+.|+.|.+++. ..+++-|.+.++.+.+.+. +.+++|-+.++. .+|....+ .+..+++.+. +... -
T Consensus 8 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~--------~~~~~~~~-~~~~~~~~~a~~~~~~V 78 (285)
T PRK07709 8 EMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGA--------ARHMTGFK-TVVAMVKALIEEMNITV 78 (285)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcch--------hhhcCCHH-HHHHHHHHHHHHcCCCC
Confidence 56777877764 4589999999999988763 578999887652 34422233 4555555443 3332 1
Q ss_pred EEEEEEecCC
Q psy9378 342 VVGVSFHVGS 351 (522)
Q Consensus 342 l~GlhfH~GS 351 (522)
-+.||.--|.
T Consensus 79 PV~lHLDHg~ 88 (285)
T PRK07709 79 PVAIHLDHGS 88 (285)
T ss_pred cEEEECCCCC
Confidence 3455554443
No 181
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=29.38 E-value=1.4e+02 Score=32.42 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC--CCeEEeeecCCC---cHHHHHHHHHcCC---eEEEEc
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLP--RVDPYYAVKCND---SQMVLEVLAALGT---GFDCAS 264 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp--~~~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaS 264 (522)
-|||.+ ++.+.|++-+..+++.|+ ....-+++=+|| +..-++.+++.|+ .+-|.|
T Consensus 95 GGTPsl-L~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQs 157 (416)
T COG0635 95 GGTPSL-LSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQS 157 (416)
T ss_pred CCcccc-CCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEecccc
Confidence 367774 688999999999999994 333667889999 5788899999995 666777
No 182
>PRK13772 formimidoylglutamase; Provisional
Probab=29.05 E-value=4.4e+02 Score=27.30 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH--H----HHHhhhCC-CCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE--L----QKVKQFHP-TAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLR 333 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E--L----~~i~~~~~-~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~ 333 (522)
.++++.+++.+.|+..+..+.+.+ + +++.+... ...|.|-++.+.-. +. .......|+++. |+.++++
T Consensus 198 ~~~~~~~~~~~~g~~~~~~~e~~~~g~~~~~~~i~~~l~~~~~vylS~DiD~lDps~aPGvgtP~pgGlt~~-e~~~il~ 276 (314)
T PRK13772 198 NTPALFARADALGVRYVEDVDMQERHLDARLAELDALLDAADHVYLTIDLDVLPAAVAPGVSAPAAYGVPLP-VVEEIVL 276 (314)
T ss_pred CChhHHHHHHhCCeEEEEhhhhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcCcccCCCCCCCCCCCCCHH-HHHHHHH
Confidence 355677777777875444443323 2 33333222 23588888876321 11 234577899998 9999998
Q ss_pred HHhhCCCeEEEEEEe
Q psy9378 334 LAKSLDLDVVGVSFH 348 (522)
Q Consensus 334 ~~k~~~L~l~GlhfH 348 (522)
.+.+.+ +++|+.+=
T Consensus 277 ~l~~~~-~v~g~Dvv 290 (314)
T PRK13772 277 HVRASG-KLRVADLA 290 (314)
T ss_pred HHHhcC-CeeEEEEE
Confidence 875432 56666654
No 183
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=28.89 E-value=2.2e+02 Score=26.30 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=57.2
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecC---C--CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHH
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVG---S--GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIA 401 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~G---S--~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a 401 (522)
.+.+.++.++..|.+.+. +|.| . .....+.+...++.+.++.+.+++.|+.+.+=+.++.. .....+++++.
T Consensus 72 ~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~-~~~~~~~~~~~ 148 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIV--VHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPF-SETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHTBSEEE--EECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSS-SSEESSHHHHH
T ss_pred HHHHHHHHHHHhCCCcee--ecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcc-ccchhhHHHHH
Confidence 456666777777877755 5555 2 22233566777777888888888999776555655554 22222234433
Q ss_pred HHHHHHHHhhCCCCCCcEEEecCcceeec
Q psy9378 402 EIINVALDEYFPVEEGVSIIAEPGRYYVA 430 (522)
Q Consensus 402 ~~I~~~l~~~~~~~~~~~li~EPGR~lva 430 (522)
+.+++.- .+.+.+.+-+|-++..
T Consensus 149 ----~~l~~~~--~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 149 ----RLLEEVD--SPNVGICFDTGHLIMA 171 (213)
T ss_dssp ----HHHHHHT--TTTEEEEEEHHHHHHT
T ss_pred ----HHHhhcC--CCcceEEEehHHHHHc
Confidence 3344432 2458888888877766
No 184
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=28.67 E-value=5.7e+02 Score=27.27 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=43.7
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCC-eEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHHHH
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRV-DPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIRYA 273 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~-~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~~A 273 (522)
-|||.. ++.+.|.+-++.+++.||-. ..-.++=+|+ +.+-++.|+++|+ .+.|-|-.++.|+..
T Consensus 81 GGTPs~-L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l 151 (394)
T PRK08898 81 GGTPSL-LSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKAL 151 (394)
T ss_pred CCCcCC-CCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHh
Confidence 367774 68889999999999998632 1234455565 5688999999985 555555556665533
No 185
>PRK01722 formimidoylglutamase; Provisional
Probab=28.60 E-value=2e+02 Score=29.76 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=48.2
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHH--H----HHHhhhCC-CCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHHH
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIE--L----QKVKQFHP-TAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLRL 334 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~E--L----~~i~~~~~-~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~~ 334 (522)
+.++.+++.+.|+..++.+.+.+ + +++.+..+ ..+|.|-++.+.-. +. .......|++.. |+.++++.
T Consensus 198 ~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~i~~~~~vyvS~DiDvlDps~aPgtgtp~pgGls~~-e~~~il~~ 276 (320)
T PRK01722 198 TQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDLDVLPAAEAPGVSAPAAGGVPLE-TLLRAIEP 276 (320)
T ss_pred CHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcChhhCCCCCCCcCCCCCHH-HHHHHHHH
Confidence 45677888888876555444432 1 22222222 34688888876421 11 223477899998 99999988
Q ss_pred HhhCCCeEEEEEEe
Q psy9378 335 AKSLDLDVVGVSFH 348 (522)
Q Consensus 335 ~k~~~L~l~GlhfH 348 (522)
+.+. -+++|+.+-
T Consensus 277 l~~~-~~vvg~Div 289 (320)
T PRK01722 277 ICRS-GKLQAADLV 289 (320)
T ss_pred HHhc-CCEEEEEEE
Confidence 7443 256666654
No 186
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=28.42 E-value=7e+02 Score=26.54 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=15.4
Q ss_pred CccccCcCCCHHH----HHHHHhhCCCeEE
Q psy9378 318 MKFGCDPISEAPR----LLRLAKSLDLDVV 343 (522)
Q Consensus 318 sKFGi~~e~e~~~----ll~~~k~~~L~l~ 343 (522)
.++|.+.+ ++.+ .++.+++.|+.+.
T Consensus 105 ~~~~~s~~-~~l~~~~~~v~~a~~~G~~v~ 133 (378)
T PRK11858 105 HKLKKTRE-EVLERMVEAVEYAKDHGLYVS 133 (378)
T ss_pred HHhCCCHH-HHHHHHHHHHHHHHHCCCeEE
Confidence 56777765 5443 5566677777644
No 187
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=28.35 E-value=99 Score=30.64 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCEEE------EcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCe
Q psy9378 268 SHIRYAAEYGIDTMT------FDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLD 341 (522)
Q Consensus 268 ~eL~~A~~~Gv~~i~------vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~ 341 (522)
.-+.+..+.|...+- ..+++|++.+++.+.+..+ .+.|- =||+.+ ...++++.+.+.|++
T Consensus 139 tAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~--~lEPT-----------GGIdl~-Nf~~I~~i~ldaGv~ 204 (236)
T TIGR03581 139 TAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF--YLEPT-----------GGIDLD-NFEEIVQIALDAGVE 204 (236)
T ss_pred HHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC--ccCCC-----------CCccHH-hHHHHHHHHHHcCCC
Confidence 356666778876442 4778888888887644333 34332 289998 999999999998987
Q ss_pred EEEEEEe
Q psy9378 342 VVGVSFH 348 (522)
Q Consensus 342 l~GlhfH 348 (522)
.+--|.+
T Consensus 205 kviPHIY 211 (236)
T TIGR03581 205 KVIPHVY 211 (236)
T ss_pred eeccccc
Confidence 7666655
No 188
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=28.19 E-value=6e+02 Score=25.18 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=99.5
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCcHH-HHHHHHHcCCeEEEEc------CCHHHHHHHHHcCCC--
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQM-VLEVLAALGTGFDCAS------KPISHIRYAAEYGID-- 279 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~-Vlk~L~~~G~GfDvaS------K~~~eL~~A~~~Gv~-- 279 (522)
.|||+. -..-+ +-++++++.+|+..+.-=+|+-..-. .++...+.|+-+-+.| .-.+-++.|.+.|..
T Consensus 34 vGTpLi--k~eG~-~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~ 110 (217)
T COG0269 34 VGTPLI--KAEGM-RAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQ 110 (217)
T ss_pred eCcHHH--HHhhH-HHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEE
Confidence 478872 22233 77889999999988888899988654 4555567787665555 223456777788864
Q ss_pred --EEEEcCHHHHHHHhh-hCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCCh
Q psy9378 280 --TMTFDNEIELQKVKQ-FHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDP 356 (522)
Q Consensus 280 --~i~vDS~~EL~~i~~-~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~ 356 (522)
++++.+.++..+..+ ..+. -+.+....+. ...|.++..+..+.++++...++.+ -+..++ ++
T Consensus 111 iDl~~~~~~~~~~~~l~~~gvd-~~~~H~g~D~--------q~~G~~~~~~~l~~ik~~~~~g~~v-----AVaGGI-~~ 175 (217)
T COG0269 111 IDLIGVWDPEQRAKWLKELGVD-QVILHRGRDA--------QAAGKSWGEDDLEKIKKLSDLGAKV-----AVAGGI-TP 175 (217)
T ss_pred EEeecCCCHHHHHHHHHHhCCC-EEEEEecccH--------hhcCCCccHHHHHHHHHhhccCceE-----EEecCC-CH
Confidence 356677776665555 5443 4566665553 2257766202333334343443322 122333 33
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHh
Q psy9378 357 PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDE 410 (522)
Q Consensus 357 ~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~ 410 (522)
+.... + .+...+++=+||++.. ..+..+-++.+++.+++
T Consensus 176 ~~i~~-----------~--~~~~~~ivIvGraIt~--a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 176 EDIPL-----------F--KGIGADIVIVGRAITG--AKDPAEAARKFKEEIDK 214 (217)
T ss_pred HHHHH-----------H--hcCCCCEEEECchhcC--CCCHHHHHHHHHHHHhc
Confidence 32111 1 1345788888998754 34677778888777754
No 189
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=28.14 E-value=1.9e+02 Score=29.64 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhCC-C-CeEEEEEeeCCCc---c-cCCCCCccccCcCCCHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE------LQKVKQFHP-T-AQLVIRIRCDAEV---A-QCQLGMKFGCDPISEAPRLL 332 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~~-~-~~V~LRIn~~~~~---~-~~~~~sKFGi~~e~e~~~ll 332 (522)
-++++.+++.+.|+..+..+.+.+ ++++.+..+ . .+|.|-++.+.-. + ........|+++. |+..++
T Consensus 176 ~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDvlDps~aPgv~tp~pgGl~~~-e~~~~l 254 (300)
T TIGR01229 176 VDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDGLDPSLAPATGTPVVGGLTFR-EGLLIM 254 (300)
T ss_pred CChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEeccccCcccCCCCCCCCCCCCCHH-HHHHHH
Confidence 356777888888887555554433 222223222 2 2688888876421 1 1234577899998 999999
Q ss_pred HHHhhCCCeEEEEEEe
Q psy9378 333 RLAKSLDLDVVGVSFH 348 (522)
Q Consensus 333 ~~~k~~~L~l~GlhfH 348 (522)
+.+.+.+ +++|+.+-
T Consensus 255 ~~i~~~~-~v~g~Div 269 (300)
T TIGR01229 255 EMLYETG-LLTALDVV 269 (300)
T ss_pred HHHHhcC-CEEEEEEE
Confidence 8875432 35555443
No 190
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=27.74 E-value=3.6e+02 Score=29.02 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=43.4
Q ss_pred ccccCcCCCHHHHHHHHhhCCCeEEEEE----EecCCCCCCh---HHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCC-
Q psy9378 319 KFGCDPISEAPRLLRLAKSLDLDVVGVS----FHVGSGCGDP---PVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYP- 390 (522)
Q Consensus 319 KFGi~~e~e~~~ll~~~k~~~L~l~Glh----fH~GS~~~~~---~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~- 390 (522)
-|++.|. .+.+++++++.|+.+.++. .+.|++.+.. ....+.++ .+.+.+++....+-++|+..-=.
T Consensus 209 dy~~~p~--~pTvld~l~~aG~~V~~VGki~DiF~g~Glt~a~~~~~~~~~~~---~~l~aL~~~~~~lif~nl~d~D~~ 283 (381)
T TIGR01696 209 DYALKPF--APTVLQKLKDEGHDVISIGKIADIYDGEGITKKVRTTSNMDGMD---ATIKEMKEDFTGISFTNLVDFDAL 283 (381)
T ss_pred CCCCCCC--CCCHHHHHHHCCCeEEEEccHHhEecCCCcccccCCCCHHHHHH---HHHHHHhcCCCCEEEEEeCCCccc
Confidence 5777773 4567778888888777662 4455544321 11222233 23333444334577888776321
Q ss_pred CCCCCCHHHHHHHHH
Q psy9378 391 GYTGYSMNRIAEIIN 405 (522)
Q Consensus 391 ~~~~~~~~~~a~~I~ 405 (522)
.....+.+.|.++|.
T Consensus 284 ~GH~~d~~~y~~ale 298 (381)
T TIGR01696 284 WGHRRDVAGYAAALE 298 (381)
T ss_pred cCCCCCHHHHHHHHH
Confidence 012345666666554
No 191
>PRK05660 HemN family oxidoreductase; Provisional
Probab=27.56 E-value=1.7e+02 Score=31.13 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC---cHHHHHHHHHcCC---eEEEEc----------------CC
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND---SQMVLEVLAALGT---GFDCAS----------------KP 266 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaS----------------K~ 266 (522)
|||. +++.+.|.+-++.+++.|+ .-..-.++=+|+ +...++.|++.|+ .+.+-| ..
T Consensus 67 GtPs-~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~ 145 (378)
T PRK05660 67 GTPS-LFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEA 145 (378)
T ss_pred Cccc-cCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHH
Q ss_pred HHHHHHHHHcCCCEEEEc
Q psy9378 267 ISHIRYAAEYGIDTMTFD 284 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vD 284 (522)
.+-++.+.+.|+..+++|
T Consensus 146 ~~ai~~~~~~G~~~v~~d 163 (378)
T PRK05660 146 KRAAKLAQGLGLRSFNLD 163 (378)
T ss_pred HHHHHHHHHcCCCeEEEE
No 192
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=27.40 E-value=2.1e+02 Score=29.54 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH-----HH-HHhhhC-CCCeEEEEEeeCCCc---c-cCCCCCccccCcCCCHHHHHH
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE-----LQ-KVKQFH-PTAQLVIRIRCDAEV---A-QCQLGMKFGCDPISEAPRLLR 333 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E-----L~-~i~~~~-~~~~V~LRIn~~~~~---~-~~~~~sKFGi~~e~e~~~ll~ 333 (522)
.+.++.+++.++|+..+..+.+.+ +. .+.... ...+|.|-++.+.-. + ........|++.. |+.++++
T Consensus 190 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~aPgtg~p~pgGLt~~-e~~~il~ 268 (307)
T TIGR01227 190 NTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAHAPGVSAPAPGGLYPD-ELLELVK 268 (307)
T ss_pred CCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhhCCCCCCCCCCCCCHH-HHHHHHH
Confidence 356788888888887665555433 22 222221 123688888876421 1 1223467899988 8888888
Q ss_pred HHhhCCCeEEEEEEec
Q psy9378 334 LAKSLDLDVVGVSFHV 349 (522)
Q Consensus 334 ~~k~~~L~l~GlhfH~ 349 (522)
.+.+. -+++|+.+--
T Consensus 269 ~l~~~-~~vvg~DvvE 283 (307)
T TIGR01227 269 RIAAS-DKVRGAEIAE 283 (307)
T ss_pred HHhcC-CCEEEEEEEE
Confidence 77433 3577777654
No 193
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=27.32 E-value=4e+02 Score=27.37 Aligned_cols=50 Identities=10% Similarity=0.059 Sum_probs=23.7
Q ss_pred HHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHH-----HHHHHHHHHHHHhhcCCCc
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR-----AIYSARQIFDLGNSLGFSM 380 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~-----ai~~~~~l~~~~~~~G~~l 380 (522)
..++++.+++.|++ .++++|-|..+.+.... ..+...+.++.+++.|+.+
T Consensus 125 ~l~~L~~l~~~G~~---~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v 179 (302)
T TIGR01212 125 VLDLLAEYVERGYE---VWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKV 179 (302)
T ss_pred HHHHHHHhhhCCce---EEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCEE
Confidence 44444444443432 34556666555543322 1333444555566667653
No 194
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=27.21 E-value=82 Score=32.81 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=51.9
Q ss_pred cccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChH--HHHHHHHHHHHHHHHHhhcCCCccEEEEc---------CC
Q psy9378 320 FGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPP--VFGRAIYSARQIFDLGNSLGFSMRVLDLG---------GG 388 (522)
Q Consensus 320 FGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~--~~~~ai~~~~~l~~~~~~~G~~l~~LdIG---------GG 388 (522)
|=++++ .+.+.++.+|+.|++.+-+.++=.-...... .|. .......+++.+++.|+.+ +|-+| ||
T Consensus 19 ~r~p~~-~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~-g~~dl~~f~~~a~~~gl~v-ilrpGpyi~aE~~~gG 95 (319)
T PF01301_consen 19 FRIPPE-YWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFT-GNRDLDRFLDLAQENGLYV-ILRPGPYICAEWDNGG 95 (319)
T ss_dssp GGS-GG-GHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---S-GGG-HHHHHHHHHHTT-EE-EEEEES---TTBGGGG
T ss_pred ccCChh-HHHHHHHHHHhCCcceEEEeccccccCCCCCccccc-chhhHHHHHHHHHHcCcEE-Eecccceecccccchh
Confidence 556777 8999999999999998887775322111111 121 2234556777788888753 45554 78
Q ss_pred CCCC---------CCCC------HHHHHHHHHHHHHhhCCCCCCc
Q psy9378 389 YPGY---------TGYS------MNRIAEIINVALDEYFPVEEGV 418 (522)
Q Consensus 389 f~~~---------~~~~------~~~~a~~I~~~l~~~~~~~~~~ 418 (522)
+|.- ...+ .+.+.+.|.+.++.++..+.++
T Consensus 96 ~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGp 140 (319)
T PF01301_consen 96 LPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGP 140 (319)
T ss_dssp --GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSS
T ss_pred hhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 7641 0111 4566667777777765433344
No 195
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=26.93 E-value=2.8e+02 Score=28.01 Aligned_cols=82 Identities=20% Similarity=0.089 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHH-HHHHhhhCCCCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHHHHhhCC
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIE-LQKVKQFHPTAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLRLAKSLD 339 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~E-L~~i~~~~~~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~~~k~~~ 339 (522)
..+++.+.+.+.|+..+. .++.+ ++.+.+.....+|.|-++.+.-. +. .......|+++. |+.+++..+.+ .
T Consensus 164 ~~~~e~~~~~~~~~~~~~-~~i~~~~~~~l~~~~~~~vyis~DiDvlDps~aPg~~~p~pgGl~~~-e~~~~~~~~~~-~ 240 (275)
T TIGR01230 164 GFKEENDFARENNIQVLK-REVDDVIAEVKQKVGDKPVYVTIDIDVLDPAFAPGTGTPEPGGLTSD-ELINFFVRALK-D 240 (275)
T ss_pred CChHHHHHHHHcCCEEEe-hHHHHHHHHHHHHhCCCceEEEEeccccCcccCCCCCCCCCCCCCHH-HHHHHHHHHhc-C
Confidence 456778888888886555 54434 33433333444688888876321 11 133577899987 88886665543 2
Q ss_pred CeEEEEEEec
Q psy9378 340 LDVVGVSFHV 349 (522)
Q Consensus 340 L~l~GlhfH~ 349 (522)
-+++|+.+--
T Consensus 241 ~~v~g~DivE 250 (275)
T TIGR01230 241 DNVVGFDVVE 250 (275)
T ss_pred CCEEEEEEEE
Confidence 4678877664
No 196
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=26.57 E-value=1.7e+02 Score=28.71 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=41.4
Q ss_pred CHHHHHHHHhhCCCeEEEEEEecCCCC-CChH--HHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 327 EAPRLLRLAKSLDLDVVGVSFHVGSGC-GDPP--VFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 327 e~~~ll~~~k~~~L~l~GlhfH~GS~~-~~~~--~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
...+.++.+++.|++.+.|.++-..-. .++. .-...+++..++++.+.+.|+.+ +||+=+
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v-ild~h~ 84 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV-ILDLHN 84 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE-EEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE-EEEecc
Confidence 467888899999999999999963332 1111 12345666677788888999876 667655
No 197
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.54 E-value=5.2e+02 Score=25.69 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCCeEEEEEEecC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVG-SGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~G-S~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
+.+.++.++..|.+.+.++.... ....+.+.+...++..+++.+.+++.|+.+-+=+.++-| -.+..+..+
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~----~~t~~~~~~---- 167 (279)
T TIGR00542 96 MEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPF----MSSISKWLK---- 167 (279)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCch----hcCHHHHHH----
Confidence 45556666777887765542211 112235567777788888888888999766544444322 122333322
Q ss_pred HHHhhCCCCCCcEEEecCcce
Q psy9378 407 ALDEYFPVEEGVSIIAEPGRY 427 (522)
Q Consensus 407 ~l~~~~~~~~~~~li~EPGR~ 427 (522)
.++.. . .+.+.+.+-+|-.
T Consensus 168 li~~v-~-~~~v~~~~D~~h~ 186 (279)
T TIGR00542 168 WDHYL-N-SPWFTLYPDIGNL 186 (279)
T ss_pred HHHHc-C-CCceEEEeCcChh
Confidence 23222 1 2456777777754
No 198
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=25.99 E-value=1.3e+02 Score=29.86 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCeEEEEc-----------CCHHHHHHHHHcCCCEEEEcC
Q psy9378 247 QMVLEVLAALGTGFDCAS-----------KPISHIRYAAEYGIDTMTFDN 285 (522)
Q Consensus 247 ~~Vlk~L~~~G~GfDvaS-----------K~~~eL~~A~~~Gv~~i~vDS 285 (522)
..+++.+++.|..+|+.+ .+++.|+.+.+.|+. +++.|
T Consensus 188 ~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~~~il~~~~~~g~~-itlgS 236 (253)
T TIGR01856 188 QRILKLVASQGKALEFNTSGLRKPLEEAYPSKELLNLAKELGIP-LVLGS 236 (253)
T ss_pred HHHHHHHHHcCCEEEEEcHhhcCCCCCCCCCHHHHHHHHHcCCC-EEecC
Confidence 467788888888888877 234566777777776 66655
No 199
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=25.91 E-value=4.2e+02 Score=28.83 Aligned_cols=65 Identities=12% Similarity=0.287 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCEEEE---------cCHHHHHHHhhh-----CCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHH
Q psy9378 267 ISHIRYAAEYGIDTMTF---------DNEIELQKVKQF-----HPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLL 332 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~v---------DS~~EL~~i~~~-----~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll 332 (522)
.++|+.|.+.|+..+++ +..+-++++.+. .....+.|.| +. +...++..|-+++ ++.+++
T Consensus 221 ~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlL--EN---mag~g~~lG~~~e-eL~~Ii 294 (413)
T PTZ00372 221 LDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKSVIIVL--EN---TAGQKNSVGSKFE-DLRDII 294 (413)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEE--ec---CCCCCCcccCCHH-HHHHHH
Confidence 36788888889886666 113344444432 1222233333 31 1122466788887 888888
Q ss_pred HHHhh
Q psy9378 333 RLAKS 337 (522)
Q Consensus 333 ~~~k~ 337 (522)
+.+..
T Consensus 295 d~v~~ 299 (413)
T PTZ00372 295 ALVED 299 (413)
T ss_pred HhcCC
Confidence 87753
No 200
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=25.69 E-value=6.8e+02 Score=25.60 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=47.1
Q ss_pred CccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCH
Q psy9378 318 MKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSM 397 (522)
Q Consensus 318 sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~ 397 (522)
--||++.+ ++-|..+++..+.-.|. |...+.+...+.++.++++++. . .+.+||.- ..++
T Consensus 192 kivGLtId---p~rL~~IR~~Rl~~lg~-----s~Ya~~~~i~~El~~A~~l~~k---~--~~pvIdvT-------~kSI 251 (269)
T PRK05339 192 KIFGLTID---PERLIEIRKERLPNLGL-----SRYASLEQCREELAEAERLFRR---E--GIPVIDVT-------NKSI 251 (269)
T ss_pred cEEEEeCC---HHHHHHHHHHHhcccCc-----CcCCCHHHHHHHHHHHHHHHHH---c--CCCEEECC-------CCcH
Confidence 34898876 44444454432222244 6666777777788887777653 3 46778842 3569
Q ss_pred HHHHHHHHHHHHh
Q psy9378 398 NRIAEIINVALDE 410 (522)
Q Consensus 398 ~~~a~~I~~~l~~ 410 (522)
|+.|..|.+.+..
T Consensus 252 EEtA~~Il~~~~~ 264 (269)
T PRK05339 252 EETAAKILEILGL 264 (269)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 201
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=25.62 E-value=5.4e+02 Score=26.63 Aligned_cols=138 Identities=18% Similarity=0.099 Sum_probs=72.6
Q ss_pred EEEEeHHHHHHHHHHHHHhCCCCeEEeeecCCCc------HHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCCEEEEcC
Q psy9378 213 FYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCNDS------QMVLEVLAALGTGFDCASKPISHIRYAA-EYGIDTMTFDN 285 (522)
Q Consensus 213 ~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~------~~Vlk~L~~~G~GfDvaSK~~~eL~~A~-~~Gv~~i~vDS 285 (522)
.+..+++.|.+.++.+++ .+-.+++..--.++. ..+++.+.+.+.++.+.+-++.++.... ..|+. +
T Consensus 69 ~~~ls~eei~~~~~~~~~-~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~-----~ 142 (340)
T TIGR03699 69 GYVLSVEEILQKIEELVA-YGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLS-----L 142 (340)
T ss_pred ccCCCHHHHHHHHHHHHH-cCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCC-----H
Confidence 467899999999988865 332345554344442 3577878776644443333455554332 33442 2
Q ss_pred HHHHHHHhhhCCCCeEEEEEee-CCCc---ccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHH
Q psy9378 286 EIELQKVKQFHPTAQLVIRIRC-DAEV---AQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR 361 (522)
Q Consensus 286 ~~EL~~i~~~~~~~~V~LRIn~-~~~~---~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ 361 (522)
.+.++++.+..-. |+.. +..+ .....-.+-+++.+ +..+.++.+++.|+.+ +.++=+|- ..+.+...+
T Consensus 143 ~e~l~~Lk~aG~~-----~~~~~g~E~~~~~~~~~~~~~~~s~~-~~l~~i~~a~~~Gi~v-~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 143 REVLERLKEAGLD-----SIPGGGAEILSDRVRKIISPKKISSE-EWLEVMETAHKLGLPT-TATMMFGH-VETLEDRIE 214 (340)
T ss_pred HHHHHHHHHcCCC-----cCCCCcccccCHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCCc-cceeEeeC-CCCHHHHHH
Confidence 5666666665321 2211 0000 00000011234555 7888888898888874 45555664 234444444
Q ss_pred HHH
Q psy9378 362 AIY 364 (522)
Q Consensus 362 ai~ 364 (522)
.+.
T Consensus 215 ~l~ 217 (340)
T TIGR03699 215 HLE 217 (340)
T ss_pred HHH
Confidence 433
No 202
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=25.60 E-value=2.3e+02 Score=28.19 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=38.8
Q ss_pred HHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCC
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGY 392 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~ 392 (522)
..++++.++++.-.+++.+.= ........+++.+++++.|++-+++-..||.|+.
T Consensus 144 ~e~fve~a~e~k~d~v~~Sal----------MTttm~~~~~viE~L~eeGiRd~v~v~vGGApvt 198 (227)
T COG5012 144 VEEFVEKAKELKPDLVSMSAL----------MTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVT 198 (227)
T ss_pred HHHHHHHHHHcCCcEEechHH----------HHHHHHHHHHHHHHHHHcCCccCeEEeecCcccc
Confidence 567777777766666654321 1223333567888999999999999999999874
No 203
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.22 E-value=7.5e+02 Score=26.37 Aligned_cols=127 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCCCCeE---EeeecCCCcHHHHHHHHHcCCeEEEEc----------------------
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLPRVDP---YYAVKCNDSQMVLEVLAALGTGFDCAS---------------------- 264 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp~~~i---~YAvKAN~~~~Vlk~L~~~G~GfDvaS---------------------- 264 (522)
|.|+ .+.+.+.+-++.+++.--++.+ .-.+=+|....-++.|++.|..+..+=
T Consensus 183 GEPL--ln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~ 260 (368)
T PRK14456 183 GEPL--LNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYP 260 (368)
T ss_pred Cccc--cCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCC
Q ss_pred --CCHHHHH-HHHHcCCCEEEE---------cCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHH
Q psy9378 265 --KPISHIR-YAAEYGIDTMTF---------DNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLL 332 (522)
Q Consensus 265 --K~~~eL~-~A~~~Gv~~i~v---------DS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll 332 (522)
+-.+.++ ++.+.|.. +.+ ||.++++.+.+...+..+.+++=+-... ..++|--+...++.++.
T Consensus 261 l~~l~~~i~~~~~~~g~~-V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~----~~~~~~~ps~e~i~~F~ 335 (368)
T PRK14456 261 LDELREALIGYASKTGEP-VTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSI----VNIKFEPVCSSTRERFR 335 (368)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccC----CCCCCCCCCHHHHHHHH
Q ss_pred HHHhhCCCeEE
Q psy9378 333 RLAKSLDLDVV 343 (522)
Q Consensus 333 ~~~k~~~L~l~ 343 (522)
+.+++.|+.+.
T Consensus 336 ~~L~~~Gi~vt 346 (368)
T PRK14456 336 DRLLDAGLQVT 346 (368)
T ss_pred HHHHHCCCcEE
No 204
>PRK08105 flavodoxin; Provisional
Probab=24.83 E-value=5.3e+02 Score=23.45 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=61.4
Q ss_pred CCeEEeeecCCCcHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCccc
Q psy9378 234 RVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQ 313 (522)
Q Consensus 234 ~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaSK~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~ 313 (522)
++.|+|+.-+-....+++.+++. +.+.|+. +.+-+.+++..+. .+....+|=+.+..+
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~----------------l~~~g~~-~~~~~~~~~~~~~--~~~~~~vi~~~sT~G--- 60 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAI----------------LTAQGHE-VTLFEDPELSDWQ--PYQDELVLVVTSTTG--- 60 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHH----------------HHhCCCc-eEEechhhCCchh--cccCCeEEEEECCCC---
Confidence 45678888777777777666432 2345665 4444444443322 122234444433211
Q ss_pred CCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEe-cCCCCCChHHHHHHHHHHHHHHHHHhhcC
Q psy9378 314 CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFH-VGSGCGDPPVFGRAIYSARQIFDLGNSLG 377 (522)
Q Consensus 314 ~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH-~GS~~~~~~~~~~ai~~~~~l~~~~~~~G 377 (522)
.|=.|+ .+.++++.+++....+.|+++. +|.+..+.+.|-.+.+... +.++++|
T Consensus 61 ------~Ge~p~-~~~~f~~~l~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~ld---~~l~~lG 115 (149)
T PRK08105 61 ------QGDLPD-SIVPLFQALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFD---ALLQEQG 115 (149)
T ss_pred ------CCCCCh-hHHHHHHHHHhcCcccCCCEEEEEeeecCCHHHHHHHHHHHH---HHHHHCC
Confidence 355566 7888888776543346676666 3555555566666655444 3445555
No 205
>PRK13776 formimidoylglutamase; Provisional
Probab=24.20 E-value=2.4e+02 Score=29.37 Aligned_cols=81 Identities=12% Similarity=0.096 Sum_probs=48.6
Q ss_pred CHHHHHHHHHcCCCEEEEcCHHH------HHHHhhhCC-CCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHHH
Q psy9378 266 PISHIRYAAEYGIDTMTFDNEIE------LQKVKQFHP-TAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLRL 334 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~~i~vDS~~E------L~~i~~~~~-~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~~ 334 (522)
+.++.+++.+.|+..+..+.+.+ ++++.+... ...|.|-++.+.-. +. .......|++.. |+.++++.
T Consensus 200 ~~~~~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~vyvS~DiD~lDps~aPGtgtP~pgGLt~~-e~~~il~~ 278 (318)
T PRK13776 200 TAALFERAKQLGVRYLSDEDMYEWSLARILAFLDDFIANVDHIYLTICLDVLPAAVAPGVSAPAARGVSLW-VIEPLVKR 278 (318)
T ss_pred CHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEeCCcCcccCCCCCCCCCCCCCHH-HHHHHHHH
Confidence 56778888888886554444433 122222221 23588888876321 11 233477899998 99999988
Q ss_pred HhhCCCeEEEEEEe
Q psy9378 335 AKSLDLDVVGVSFH 348 (522)
Q Consensus 335 ~k~~~L~l~GlhfH 348 (522)
+.+.. +++|+.+=
T Consensus 279 l~~~~-~vvg~Dvv 291 (318)
T PRK13776 279 IIASG-KLRLADIA 291 (318)
T ss_pred HHccC-CEEEEEEE
Confidence 74432 56676654
No 206
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=24.19 E-value=8.9e+02 Score=25.83 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=69.5
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC---cHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHcCCCEE
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND---SQMVLEVLAALGT---GFDCASKPISHIRYAAEYGIDTM 281 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~---~~~Vlk~L~~~G~---GfDvaSK~~~eL~~A~~~Gv~~i 281 (522)
-|||. +++.+.+++-++.+++.++ .-..-.++=||| +...++.|++.|+ .+.|-|-.++.|+.. |-.
T Consensus 70 GGTPs-~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l---gR~-- 143 (390)
T PRK06582 70 GGTPS-LMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKL---GRT-- 143 (390)
T ss_pred CCccc-cCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHc---CCC--
Confidence 36884 4678888888888888663 111235677788 5789999999985 455555545555532 221
Q ss_pred EEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCC--CHHHHHHHHhhC---CCeEEEEEEecCC
Q psy9378 282 TFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPIS--EAPRLLRLAKSL---DLDVVGVSFHVGS 351 (522)
Q Consensus 282 ~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~--e~~~ll~~~k~~---~L~l~GlhfH~GS 351 (522)
.+.++..+..+.+.++ ...|+.+.- ||++-+. ++.+-++.+.+. ++.+..+....||
T Consensus 144 --h~~~~~~~ai~~~~~~--~~~v~~DlI---------~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT 205 (390)
T PRK06582 144 --HDCMQAIKTIEAANTI--FPRVSFDLI---------YARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGT 205 (390)
T ss_pred --CCHHHHHHHHHHHHHh--CCcEEEEee---------cCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCC
Confidence 2333333332322222 345555421 6775540 233444444332 5666666666665
No 207
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=24.17 E-value=5.9e+02 Score=24.61 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=12.9
Q ss_pred CHHHHHHHHhh-CCCeEEEEEEec
Q psy9378 327 EAPRLLRLAKS-LDLDVVGVSFHV 349 (522)
Q Consensus 327 e~~~ll~~~k~-~~L~l~GlhfH~ 349 (522)
++.++++.+++ ..-...|+|+|-
T Consensus 167 ~v~~lv~~~~~~~~~~~l~~H~Hn 190 (237)
T PF00682_consen 167 DVAELVRALREALPDIPLGFHAHN 190 (237)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEBB
T ss_pred HHHHHHHHHHHhccCCeEEEEecC
Confidence 56666666654 221455667774
No 208
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=24.15 E-value=4e+02 Score=27.91 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=33.5
Q ss_pred HHHhhh-CCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCC-CeEEEEEEecCC
Q psy9378 290 QKVKQF-HPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLD-LDVVGVSFHVGS 351 (522)
Q Consensus 290 ~~i~~~-~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~-L~l~GlhfH~GS 351 (522)
+.+.+. .+...|.+|+++... .+-|.+++ +..++++.+.+.| +.+ ||.|.|+
T Consensus 199 ~~ir~~vg~~~~v~iRl~~~~~-------~~~G~~~~-e~~~~~~~l~~~G~vd~--i~vs~g~ 252 (343)
T cd04734 199 AAVRAAVGPDFIVGIRISGDED-------TEGGLSPD-EALEIAARLAAEGLIDY--VNVSAGS 252 (343)
T ss_pred HHHHHHcCCCCeEEEEeehhhc-------cCCCCCHH-HHHHHHHHHHhcCCCCE--EEeCCCC
Confidence 444443 345789999997642 12377777 7888888887776 555 5555554
No 209
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.87 E-value=6.9e+02 Score=26.40 Aligned_cols=136 Identities=13% Similarity=0.006 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCC-CHHHHHHHHhhCCCeEEEE
Q psy9378 267 ISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPIS-EAPRLLRLAKSLDLDVVGV 345 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~-e~~~ll~~~k~~~L~l~Gl 345 (522)
...+..++..+...|.+|-..-+.+.....++..++|++.-..- ..++.| .+.. ....-.+.+++.|-+.+.+
T Consensus 52 K~lv~~~l~~~asaILld~~yG~~a~~~~~~~~GLil~~e~tg~-----d~t~~g-r~~~~~~~~sve~a~~~GAdAVk~ 125 (340)
T PRK12858 52 KLAVSEALTPYASAILLDPEYGLPAAKVRDPNCGLLLSYEKTGY-----DATAPG-RLPDLLDNWSVRRIKEAGADAVKL 125 (340)
T ss_pred HHHHHHHHhhCCCEEEEccccChhhhcccCCCCCeEEEeccccc-----ccCCCC-CCccccccccHHHHHHcCCCEEEE
Confidence 34556666767777888854434443333456678888763110 012223 1210 1222356678889999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCc--cEE--EEcCCCCCC--C-CCCHHHHHHHHHHHHH
Q psy9378 346 SFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSM--RVL--DLGGGYPGY--T-GYSMNRIAEIINVALD 409 (522)
Q Consensus 346 hfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l--~~L--dIGGGf~~~--~-~~~~~~~a~~I~~~l~ 409 (522)
+.+.|+.. +.+.-.+.++...++.+.+++.|+++ ++| .-|++.... | ..+.+.++.+++...+
T Consensus 126 lv~~~~d~-~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~ 195 (340)
T PRK12858 126 LLYYRPDE-DDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSK 195 (340)
T ss_pred EEEeCCCc-chHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhh
Confidence 99999753 22223456667778888899998764 322 234443222 1 1234555555554443
No 210
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.68 E-value=6e+02 Score=25.07 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=38.0
Q ss_pred HHHHHHHHhhCCCeEEEEEEecC-CCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcC
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVG-SGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGG 387 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~G-S~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGG 387 (522)
+.++++.++..|.+.+.++.... ......+.+...++.+.++.+.+++.|+.+-+=+.++
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~ 156 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDT 156 (284)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCc
Confidence 45666667778888776532110 1112345666777777888888889998776656544
No 211
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=23.64 E-value=5.2e+02 Score=29.54 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred CHHHHHHHHHcCCC--EEEEcCHHHHHHHhhhCCC-------CeEE-------------------EEEeeCCCcccCCCC
Q psy9378 266 PISHIRYAAEYGID--TMTFDNEIELQKVKQFHPT-------AQLV-------------------IRIRCDAEVAQCQLG 317 (522)
Q Consensus 266 ~~~eL~~A~~~Gv~--~i~vDS~~EL~~i~~~~~~-------~~V~-------------------LRIn~~~~~~~~~~~ 317 (522)
+.+++....+.|+. .+++.+.++.+.+.++.+. .++. |||||+.
T Consensus 43 tv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN-------- 114 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQYAEKVRINPGN-------- 114 (611)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHhhCCEEECCCc--------
Q ss_pred CccccC---------------------cCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHH---------HHHHHH
Q psy9378 318 MKFGCD---------------------PISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR---------AIYSAR 367 (522)
Q Consensus 318 sKFGi~---------------------~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~---------ai~~~~ 367 (522)
||-. .+ .+..+++.+|+.|+-+. +|.+.-+.+.... .++.+.
T Consensus 115 --~~~~~k~f~~~~Ytdeey~~el~~i~e-~~~~~v~~ak~~~~~iR-----IGvN~GSL~~~i~~~yg~tpe~mVeSAl 186 (611)
T PRK02048 115 --YVDPGRTFKKLEYTDEEYAQEIQKIRD-RFVPFLNICKENHTAIR-----IGVNHGSLSDRIMSRYGDTPEGMVESCM 186 (611)
T ss_pred --CCCccccccccccchhhhhhhhhhHHH-HHHHHHHHHHHCCCCEE-----EecCCcCchHHHHHHhCCChHHHHHHHH
Q ss_pred HHHHHHhhcCCCccEEEE
Q psy9378 368 QIFDLGNSLGFSMRVLDL 385 (522)
Q Consensus 368 ~l~~~~~~~G~~l~~LdI 385 (522)
+.+++++++|+.=-++.+
T Consensus 187 e~~~i~e~~~f~diviS~ 204 (611)
T PRK02048 187 EFLRICVEEHFTDVVISI 204 (611)
T ss_pred HHHHHHHHCCCCcEEEEE
No 212
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=23.63 E-value=9.1e+02 Score=25.71 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=78.4
Q ss_pred HHHHHHHHcCC--CEEEEcCHHHHHHHhhhCC--CCeEEEEEeeCCCcccCCCCCcc-c-cCcCCC------------HH
Q psy9378 268 SHIRYAAEYGI--DTMTFDNEIELQKVKQFHP--TAQLVIRIRCDAEVAQCQLGMKF-G-CDPISE------------AP 329 (522)
Q Consensus 268 ~eL~~A~~~Gv--~~i~vDS~~EL~~i~~~~~--~~~V~LRIn~~~~~~~~~~~sKF-G-i~~e~e------------~~ 329 (522)
+.|..|.+.|. ..+|+-+.+.++.+.+.+. +.+|+|-+.+.. .+| | ...+ . +.
T Consensus 11 ~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~--------~~~~~g~~~~-~~~~~~~~~~~~~~~ 81 (350)
T PRK09197 11 EMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGG--------AAFIAGKGVK-DDGQGAAVLGAIAGA 81 (350)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhh--------HhhcCCcccc-ccchhhhhhhHHHHH
Confidence 45677777764 4589999999999988863 578899887653 222 2 0011 1 33
Q ss_pred HHHHHH-hhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q psy9378 330 RLLRLA-KSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVAL 408 (522)
Q Consensus 330 ~ll~~~-k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l 408 (522)
..++.+ ++..+. +.||.-.|... ..+...++++...+.++.+-+.|++-=.+| |+.+ ++++=.+..++.+
T Consensus 82 ~~v~~~A~~~~VP-ValHLDHg~~~-~~~~i~~ai~~g~~~v~~a~~~gftSVMiD-gS~l------pfEeNI~~TkevV 152 (350)
T PRK09197 82 KHVHEVAEHYGVP-VILHTDHCAKK-LLPWIDGLLDAGEKHFAAGGKPLFSSHMID-LSEE------PLEENIEICSKYL 152 (350)
T ss_pred HHHHHHHHHCCCC-EEEECCCCCCc-chHHHHHHHHhhHHHHHhcCCCCceeEEee-CCCC------CHHHHHHHHHHHH
Confidence 444443 345554 44555444321 144455555554444444444455555666 4433 3554444444433
Q ss_pred HhhCCCCCCcEEEecCcce
Q psy9378 409 DEYFPVEEGVSIIAEPGRY 427 (522)
Q Consensus 409 ~~~~~~~~~~~li~EPGR~ 427 (522)
+.. . ..++.+-.|.|+-
T Consensus 153 e~A-h-~~GvsVEaELG~I 169 (350)
T PRK09197 153 ERM-A-KAGMTLEIELGVT 169 (350)
T ss_pred HHH-H-HcCCEEEEEEecc
Confidence 222 1 2578999999984
No 213
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=23.59 E-value=3.6e+02 Score=28.66 Aligned_cols=48 Identities=19% Similarity=0.426 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCeEEEEc-CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhh
Q psy9378 248 MVLEVLAALGTGFDCAS-KPISHIRYAAEYGIDTMTFDNEIELQKVKQF 295 (522)
Q Consensus 248 ~Vlk~L~~~G~GfDvaS-K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~ 295 (522)
..++.+.+.|..+.-+- .+.++++.|++.||..||+++.-.......+
T Consensus 238 ~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~ 286 (347)
T TIGR01521 238 EWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAF 286 (347)
T ss_pred HhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHH
Confidence 55666666665444443 6689999999999999999997665554443
No 214
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.54 E-value=8.6e+02 Score=25.41 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=44.9
Q ss_pred HHHHHHhhCCCeEEEEEEecCCCCCChHHHHH-----HHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHH
Q psy9378 330 RLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR-----AIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEII 404 (522)
Q Consensus 330 ~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~-----ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I 404 (522)
+.++.+++.|++-+ ++|-|..+.+.... ..+.+.+.++.+++.|+..--+|+==|+|+.. .+++.+.+
T Consensus 101 e~l~~l~~~Gv~ri----siGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt---~~~~~~~l 173 (360)
T TIGR00539 101 EWCKGLKGAGINRL----SLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT---LNSLKEEL 173 (360)
T ss_pred HHHHHHHHcCCCEE----EEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC---HHHHHHHH
Confidence 44555666666532 23344333332211 13344555666677776533466667776643 55555555
Q ss_pred HHHHHhhCCCC-CCcEEEecCcceee
Q psy9378 405 NVALDEYFPVE-EGVSIIAEPGRYYV 429 (522)
Q Consensus 405 ~~~l~~~~~~~-~~~~li~EPGR~lv 429 (522)
..+++ .-+.. .-..+..+||..+-
T Consensus 174 ~~~~~-l~~~~is~y~l~~~~gT~~~ 198 (360)
T TIGR00539 174 KLAKE-LPINHLSAYALSVEPNTNFE 198 (360)
T ss_pred HHHHc-cCCCEEEeecceEcCCChhh
Confidence 54443 21100 11235677875443
No 215
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=23.40 E-value=7.7e+02 Score=24.81 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCC-eEEE---Ec---------CCHH--------HHHHHHHcC
Q psy9378 219 GEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGT-GFDC---AS---------KPIS--------HIRYAAEYG 277 (522)
Q Consensus 219 ~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDv---aS---------K~~~--------eL~~A~~~G 277 (522)
+...+..+.+.+.-...+++-.. .++..=++...+.|+ .+.+ +| ++.+ -+++|.+.|
T Consensus 48 ~~~~~~~~~l~~~~~~~~v~~~~--r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G 125 (262)
T cd07948 48 PQSRADCEAIAKLGLKAKILTHI--RCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKG 125 (262)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEe--cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 44455556565432234443233 444444666667774 2222 22 3332 335666777
Q ss_pred CCE-EEE-----cCHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCcccc-CcCCCHHHHHHHHhh-CCCeEEEEEEec
Q psy9378 278 IDT-MTF-----DNEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGC-DPISEAPRLLRLAKS-LDLDVVGVSFHV 349 (522)
Q Consensus 278 v~~-i~v-----DS~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi-~~e~e~~~ll~~~k~-~~L~l~GlhfH~ 349 (522)
... +++ .+.+.+..+.+......+ -||...+. +|+ .|+ ++.++++.+++ .++. .|+|+|-
T Consensus 126 ~~v~~~~eda~r~~~~~l~~~~~~~~~~g~-~~i~l~Dt---------~G~~~P~-~v~~~~~~~~~~~~~~-i~~H~Hn 193 (262)
T cd07948 126 IEVRFSSEDSFRSDLVDLLRVYRAVDKLGV-NRVGIADT---------VGIATPR-QVYELVRTLRGVVSCD-IEFHGHN 193 (262)
T ss_pred CeEEEEEEeeCCCCHHHHHHHHHHHHHcCC-CEEEECCc---------CCCCCHH-HHHHHHHHHHHhcCCe-EEEEECC
Confidence 652 233 235666555544221110 13443321 333 566 88889988876 4644 5999995
Q ss_pred CCC
Q psy9378 350 GSG 352 (522)
Q Consensus 350 GS~ 352 (522)
--+
T Consensus 194 ~~G 196 (262)
T cd07948 194 DTG 196 (262)
T ss_pred CCC
Confidence 443
No 216
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=23.22 E-value=8.7e+02 Score=25.33 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=74.1
Q ss_pred HHHHHHHHHcC--CCEEEEcCHHHHHHHhhhCC--CCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhh-CC-C
Q psy9378 267 ISHIRYAAEYG--IDTMTFDNEIELQKVKQFHP--TAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKS-LD-L 340 (522)
Q Consensus 267 ~~eL~~A~~~G--v~~i~vDS~~EL~~i~~~~~--~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~-~~-L 340 (522)
.+.|+.|.+.| |..+|+.|.+.++.+.+.+. +.+|+|-+.+.. .|| +..+ .+..+++.+.+ .. +
T Consensus 6 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~--------~~~-~g~~-~~~~~~~~~a~~~~~V 75 (307)
T PRK05835 6 NEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGA--------IKY-MGID-MAVGMVKIMCERYPHI 75 (307)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccH--------Hhh-CChH-HHHHHHHHHHHhcCCC
Confidence 35677888876 44689999999999998874 578888876642 233 1122 34555554433 32 4
Q ss_pred eEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCcEE
Q psy9378 341 DVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALDEYFPVEEGVSI 420 (522)
Q Consensus 341 ~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~~~~~~~~~~~l 420 (522)
-+.||.-.|. +.+...+ +-+.|++-=.+| |.- .++++=.+..++.++.. . ..++.+
T Consensus 76 -PValHLDHg~---~~e~i~~-----------ai~~GftSVM~D-gS~------l~~eeNi~~T~~vve~A-h-~~gv~V 131 (307)
T PRK05835 76 -PVALHLDHGT---TFESCEK-----------AVKAGFTSVMID-ASH------HAFEENLELTSKVVKMA-H-NAGVSV 131 (307)
T ss_pred -eEEEECCCCC---CHHHHHH-----------HHHcCCCEEEEe-CCC------CCHHHHHHHHHHHHHHH-H-HcCCEE
Confidence 3445554443 3332222 223577666677 333 34555444444444322 1 257899
Q ss_pred EecCccee
Q psy9378 421 IAEPGRYY 428 (522)
Q Consensus 421 i~EPGR~l 428 (522)
-.|.|+--
T Consensus 132 EaElG~vg 139 (307)
T PRK05835 132 EAELGRLM 139 (307)
T ss_pred EEEecccC
Confidence 99999853
No 217
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=23.04 E-value=1.5e+02 Score=32.29 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCeEEEEeHHHHHHHHHHHHHhCC-CCeEEeeecCCC---cHHHHHHHHHcCC-----eEEEEc--------------CC
Q psy9378 210 EDAFYVLDVGEIVRKHEDWKLKLP-RVDPYYAVKCND---SQMVLEVLAALGT-----GFDCAS--------------KP 266 (522)
Q Consensus 210 ~tP~yV~Dl~~I~~ni~~l~~~lp-~~~i~YAvKAN~---~~~Vlk~L~~~G~-----GfDvaS--------------K~ 266 (522)
|||.++ +.+.+.+-++.+++.++ ....-.++=+|+ +...++.|++.|+ |++-.+ ..
T Consensus 111 GtP~~l-~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~ 189 (455)
T TIGR00538 111 GTPTYL-SPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMI 189 (455)
T ss_pred CCcCCC-CHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHH
Q ss_pred HHHHHHHHHcCCCEEEEc
Q psy9378 267 ISHIRYAAEYGIDTMTFD 284 (522)
Q Consensus 267 ~~eL~~A~~~Gv~~i~vD 284 (522)
.+-++.+.+.|+..+++|
T Consensus 190 ~~ai~~l~~~G~~~v~~d 207 (455)
T TIGR00538 190 FELMNHAREAGFTSINID 207 (455)
T ss_pred HHHHHHHHhcCCCcEEEe
No 218
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.80 E-value=3e+02 Score=28.33 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=31.3
Q ss_pred HHHHHHHHcC--CCEEEEcCHHHHHHHhhhCC--CCeEEEEEeeC
Q psy9378 268 SHIRYAAEYG--IDTMTFDNEIELQKVKQFHP--TAQLVIRIRCD 308 (522)
Q Consensus 268 ~eL~~A~~~G--v~~i~vDS~~EL~~i~~~~~--~~~V~LRIn~~ 308 (522)
+-|+.|.+.| |..+|+-|.+.++.+.+.+. +.+++|-+.+.
T Consensus 8 ~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~ 52 (284)
T PRK12737 8 NMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPG 52 (284)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 5567777776 44689999999999988763 46888877664
No 219
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.72 E-value=9e+02 Score=25.32 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCeEE-eeecCCCcHHHHHHHHHcCC-eEEEEc------CCHHHHHHHHHcCCCEE------EEcCHH
Q psy9378 222 VRKHEDWKLKLPRVDPY-YAVKCNDSQMVLEVLAALGT-GFDCAS------KPISHIRYAAEYGIDTM------TFDNEI 287 (522)
Q Consensus 222 ~~ni~~l~~~lp~~~i~-YAvKAN~~~~Vlk~L~~~G~-GfDvaS------K~~~eL~~A~~~Gv~~i------~vDS~~ 287 (522)
.+.++++.+..++.++. ...--..+..=++...+.|+ .+-++. ...+.++.|.+.|.... .--+.+
T Consensus 64 ~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e 143 (333)
T TIGR03217 64 LEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPE 143 (333)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHH
Q ss_pred HHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCC--eEEEEEEecCCCCCChHHHHHHHHH
Q psy9378 288 ELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDL--DVVGVSFHVGSGCGDPPVFGRAIYS 365 (522)
Q Consensus 288 EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L--~l~GlhfH~GS~~~~~~~~~~ai~~ 365 (522)
++..+.+.......- +|..-+..+ .+.|+ ++.++++.+++.-- .-+|+|+|-.-+. ++..
T Consensus 144 ~l~~~a~~~~~~Ga~-~i~i~DT~G--------~~~P~-~v~~~v~~l~~~l~~~i~ig~H~HnnlGl--------a~AN 205 (333)
T TIGR03217 144 KLAEQAKLMESYGAD-CVYIVDSAG--------AMLPD-DVRDRVRALKAVLKPETQVGFHAHHNLSL--------AVAN 205 (333)
T ss_pred HHHHHHHHHHhcCCC-EEEEccCCC--------CCCHH-HHHHHHHHHHHhCCCCceEEEEeCCCCch--------HHHH
Q ss_pred HHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 366 ARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 366 ~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
+...++..... ++-.+-=+|+|-+... .|.++..++.
T Consensus 206 slaAi~aGa~~-iD~Sl~G~G~~aGN~~---~E~lv~~l~~ 242 (333)
T TIGR03217 206 SIAAIEAGATR-IDASLRGLGAGAGNAP---LEVFVAVLDR 242 (333)
T ss_pred HHHHHHhCCCE-EEeecccccccccCcc---HHHHHHHHHh
No 220
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.61 E-value=7.9e+02 Score=24.64 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=10.3
Q ss_pred HHHhhCCCeEEEEE
Q psy9378 333 RLAKSLDLDVVGVS 346 (522)
Q Consensus 333 ~~~k~~~L~l~Glh 346 (522)
+++.+.|.+++|+|
T Consensus 174 ~~A~~~gadiIgin 187 (260)
T PRK00278 174 ERALKLGAPLIGIN 187 (260)
T ss_pred HHHHHcCCCEEEEC
Confidence 44556788999986
No 221
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=22.43 E-value=8.2e+02 Score=25.84 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=15.5
Q ss_pred CccccCcC---CCHHHHHHHHhhCCCeEE
Q psy9378 318 MKFGCDPI---SEAPRLLRLAKSLDLDVV 343 (522)
Q Consensus 318 sKFGi~~e---~e~~~ll~~~k~~~L~l~ 343 (522)
.+||.+.+ +.+.+.++.+++.|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 101 YKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45677654 034456666777777653
No 222
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.40 E-value=9.5e+02 Score=25.50 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=34.0
Q ss_pred EEeHHHHHHHHHHHHHh-CCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEE
Q psy9378 215 VLDVGEIVRKHEDWKLK-LPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS---KPISHIRYAAEYGIDTM 281 (522)
Q Consensus 215 V~Dl~~I~~ni~~l~~~-lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS---K~~~eL~~A~~~Gv~~i 281 (522)
-++.+...+-++.+.++ ++.+.+-+..-+.....+++.+.+.|....+.. -..++++.|++.|+..+
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 92 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAV 92 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEE
Confidence 34555555555554432 123344443333333356677766665444433 22567777777776643
No 223
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.33 E-value=4.8e+02 Score=25.86 Aligned_cols=91 Identities=10% Similarity=0.070 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCCCeEEEEEEecCC-CCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVGS-GCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINV 406 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~GS-~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~ 406 (522)
+.+.++.++..|...+.++..... .....+.+...++.++++.+.+++.|+.+.+=+.++-+ ..+.++..+.+
T Consensus 101 ~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~----~~~~~~~~~ll-- 174 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPF----MNSISKALGYA-- 174 (283)
T ss_pred HHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcc----cCCHHHHHHHH--
Confidence 445666677788887765422111 11224445555667777888888899876655543322 12344443333
Q ss_pred HHHhhCCCCCCcEEEecCccee
Q psy9378 407 ALDEYFPVEEGVSIIAEPGRYY 428 (522)
Q Consensus 407 ~l~~~~~~~~~~~li~EPGR~l 428 (522)
++.- .+.+.+.+-+|-..
T Consensus 175 --~~v~--~~~lgl~~D~~h~~ 192 (283)
T PRK13209 175 --HYLN--SPWFQLYPDIGNLS 192 (283)
T ss_pred --HHhC--CCccceEeccchHH
Confidence 2221 24567777777554
No 224
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=22.09 E-value=8.2e+02 Score=24.64 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCcc--EEEEcCCC
Q psy9378 328 APRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMR--VLDLGGGY 389 (522)
Q Consensus 328 ~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~--~LdIGGGf 389 (522)
.+++++.+++.+..++.+|.|-...-.+. .+.++.+.+.++.+.+.|++.+ ++|-|=|+
T Consensus 105 ~~~~~~l~~~~g~~vv~m~~~~~g~P~t~---~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~ 165 (261)
T PRK07535 105 LEVVLPLVKKYNAPVVALTMDDTGIPKDA---EDRLAVAKELVEKADEYGIPPEDIYIDPLVLP 165 (261)
T ss_pred CHHHHHHHHHhCCCEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCc
Confidence 45677778888999999999843222222 3335556667777888998654 77777774
No 225
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=22.03 E-value=2.9e+02 Score=30.72 Aligned_cols=140 Identities=18% Similarity=0.208 Sum_probs=82.9
Q ss_pred CeEEeeecCCCcHHHHHHHHHc----CC-----eEEEEc-------CCHHHHHHHHHcCCCEEEEcCH----HHHHHHhh
Q psy9378 235 VDPYYAVKCNDSQMVLEVLAAL----GT-----GFDCAS-------KPISHIRYAAEYGIDTMTFDNE----IELQKVKQ 294 (522)
Q Consensus 235 ~~i~YAvKAN~~~~Vlk~L~~~----G~-----GfDvaS-------K~~~eL~~A~~~Gv~~i~vDS~----~EL~~i~~ 294 (522)
+.+.-+.|--.++.++..+... ++ ++|+.- |....|....+.|-. |.+|++ +.|..|.+
T Consensus 356 VsINl~a~Dl~s~rli~~~~~~l~~~~v~pqQI~lElTER~f~D~~~~~~iI~r~ReaG~~-IyIDDFGTGYSnL~YLq~ 434 (524)
T COG4943 356 VSINLSASDLASPRLIDRLNRKLAQYQVRPQQIALELTERTFADPKKMTPIILRLREAGHE-IYIDDFGTGYSNLHYLQS 434 (524)
T ss_pred EEEeeeehhhcCchHHHHHHHHHHhcCcChHHheeehhhhhhcCchhhhHHHHHHHhcCCe-EEEccCcCcchhHHHHhh
Confidence 4556666767777777666543 32 444433 677788889999986 999984 67888877
Q ss_pred hCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCCCCChHHHHHHHHHHHHHHHHHh
Q psy9378 295 FHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGRAIYSARQIFDLGN 374 (522)
Q Consensus 295 ~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~ 374 (522)
+.-+ .|+|+-..-. + .+.+.-..+ =++.+++.+|.++|+++- +.++...+ .+.++
T Consensus 435 L~VD---aLKIDKsFvd-t--lg~~~a~~~--I~~hII~MAk~L~L~iVa----------------EGVEteeQ-~~~LR 489 (524)
T COG4943 435 LPVD---ALKIDKSFVD-T--LGTDSASHL--IAPHIIEMAKSLGLKIVA----------------EGVETEEQ-VDWLR 489 (524)
T ss_pred CCcc---ceeccHHHHH-h--hccCcccch--hHHHHHHHHHHcCCcEEe----------------ecccHHHH-HHHHH
Confidence 7433 2555532100 0 111111111 367899999998876541 11122222 23567
Q ss_pred hcCCCccEEEEcCCCCCCCCCCHHHHHHHHH
Q psy9378 375 SLGFSMRVLDLGGGYPGYTGYSMNRIAEIIN 405 (522)
Q Consensus 375 ~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~ 405 (522)
+.| ++.|=|+--..+...++|.+...
T Consensus 490 ~~G-----v~~gQGW~fskaLp~q~Fi~~~~ 515 (524)
T COG4943 490 KRG-----VHYGQGWLFSKALPAQAFLDWAE 515 (524)
T ss_pred HcC-----CccccccccCCCCCHHHHHHHHH
Confidence 788 46688876666666777665544
No 226
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=21.86 E-value=9.5e+02 Score=25.31 Aligned_cols=149 Identities=16% Similarity=0.102 Sum_probs=82.3
Q ss_pred ccCCCCCCCCccccccCCcceEEecCCCCCCCccccCCccccCCCCCeEEEEeHHHHHHHHHHHHHhCCCCeEEeeecCC
Q psy9378 165 IRVLPEFQPTISVWKRIPKSLMVYPRTDDMTQVPVYNYPDNVGMKEDAFYVLDVGEIVRKHEDWKLKLPRVDPYYAVKCN 244 (522)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~~tP~yV~Dl~~I~~ni~~l~~~lp~~~i~YAvKAN 244 (522)
+++..+|+.-...|+.+|-...+ +...+++-++.-++ .|+-+=+.+.+.+-.++++++--.+--.|+-|--
T Consensus 62 ~~i~~~~k~~sr~~~~~~t~v~~--~~~~ig~~~~~~IA-------GPCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpR 132 (335)
T PRK08673 62 VPVLKPYKLASREFKPEPTVVKV--GDVEIGGGKPVVIA-------GPCSVESEEQILEIARAVKEAGAQILRGGAFKPR 132 (335)
T ss_pred eecCCchhhhhcccCCCCCEEEE--CCEEECCCceEEEE-------ecCccCCHHHHHHHHHHHHHhchhhccCcEecCC
Confidence 56677777777777777766655 23445444444444 4787789999999999988764333333444532
Q ss_pred Cc--------HHHHHHHHHcC--CeEEEEc--CCHHHHHHHHHcCCCEE-----EEcCHHHHHHHhhhCCCCeEEEEEee
Q psy9378 245 DS--------QMVLEVLAALG--TGFDCAS--KPISHIRYAAEYGIDTM-----TFDNEIELQKVKQFHPTAQLVIRIRC 307 (522)
Q Consensus 245 ~~--------~~Vlk~L~~~G--~GfDvaS--K~~~eL~~A~~~Gv~~i-----~vDS~~EL~~i~~~~~~~~V~LRIn~ 307 (522)
.+ ..=++.|.+.. .|+.+.| -.+++++++.+. +..+ ++.|.+-|+.+++.. .+|+|. .
T Consensus 133 Tsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lqIgAr~~~N~~LL~~va~~~--kPViLk--~ 207 (335)
T PRK08673 133 TSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQIGARNMQNFDLLKEVGKTN--KPVLLK--R 207 (335)
T ss_pred CCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcCC--CcEEEe--C
Confidence 22 22344444321 4555555 556666666554 3322 445555555555432 244442 1
Q ss_pred CCCcccCCCCCccccCcCCCHHHHHHHHhhCC
Q psy9378 308 DAEVAQCQLGMKFGCDPISEAPRLLRLAKSLD 339 (522)
Q Consensus 308 ~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~ 339 (522)
+ ...+++ |+...++.+...|
T Consensus 208 G-----------~~~ti~-E~l~A~e~i~~~G 227 (335)
T PRK08673 208 G-----------MSATIE-EWLMAAEYILAEG 227 (335)
T ss_pred C-----------CCCCHH-HHHHHHHHHHHcC
Confidence 1 112345 6777777776543
No 227
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=21.83 E-value=1.6e+02 Score=30.44 Aligned_cols=66 Identities=23% Similarity=0.418 Sum_probs=43.1
Q ss_pred EEEEecCCC-CCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCC--CCCCCCC--CHHHHHHHHHHHHH
Q psy9378 344 GVSFHVGSG-CGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGG--YPGYTGY--SMNRIAEIINVALD 409 (522)
Q Consensus 344 GlhfH~GS~-~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGG--f~~~~~~--~~~~~a~~I~~~l~ 409 (522)
|.+.-.||- ..+....+++++.-.+.+++.+..|.+.-.+=+|-| ||+..+. .+++|.+.++...+
T Consensus 138 ~~sYKyGSLsh~d~~tR~qAieHnlECveIg~~~GSKaltvWvgDGsnfPGQ~nF~r~feRyl~sm~~iY~ 208 (430)
T COG4952 138 GHSYKYGSLSHTDAATRRQAIEHNLECVEIGKALGSKALTVWVGDGSNFPGQSNFTRAFERYLDSMKAIYA 208 (430)
T ss_pred ccccccccccCccHHHHHHHHHhhHHHHHHHHhhCcceEEEEeccCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 344555663 235566778899888889999999987766666655 6665432 26666666555443
No 228
>PLN02615 arginase
Probab=21.34 E-value=7.5e+02 Score=25.99 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhC----CCCeEEEEEeeCCCc---cc-CCCCCccccCcCCCHHHHHHHHh
Q psy9378 265 KPISHIRYAAEYGIDTMTFDNEIELQKVKQFH----PTAQLVIRIRCDAEV---AQ-CQLGMKFGCDPISEAPRLLRLAK 336 (522)
Q Consensus 265 K~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~----~~~~V~LRIn~~~~~---~~-~~~~sKFGi~~e~e~~~ll~~~k 336 (522)
.+.++.+.+.+.|+..+.+..+++.+.+.+.. ...++.|-++.+.-. +. .....-.|++.. |+.++++.+.
T Consensus 221 ~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgtpepgGLt~~-e~l~il~~l~ 299 (338)
T PLN02615 221 ITKEGREQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFR-DVLNILHNLQ 299 (338)
T ss_pred CCHHHHHHHHHCCCEEEEeeHhhhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCCCCCCCCCHH-HHHHHHHHhh
Confidence 56789999999998767776665443332222 123588888877421 11 223567899987 8888888764
Q ss_pred hCCCeEEEEEEe
Q psy9378 337 SLDLDVVGVSFH 348 (522)
Q Consensus 337 ~~~L~l~GlhfH 348 (522)
. +++|+-+-
T Consensus 300 ~---~vvG~Dvv 308 (338)
T PLN02615 300 G---DVVGADVV 308 (338)
T ss_pred C---CEEEEEEE
Confidence 2 67776665
No 229
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=21.14 E-value=1.4e+02 Score=35.59 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=30.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHH
Q psy9378 344 GVSFHVGSGCGDPPVFGRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIIN 405 (522)
Q Consensus 344 GlhfH~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~ 405 (522)
+++.|.++|. +...+..+.++..+ ....+.+..-++||||++.....++.++..+.
T Consensus 355 ~l~v~~stQ~--p~~~r~~vA~~Lgl----p~~~VrV~~~~vGGgFG~K~~~~~~~~aA~~A 410 (848)
T TIGR03311 355 GVIIYTSTQG--VYDEQRELASLLGL----PKEKIRVINKFVGGGFGGKEDMSVQHHAALLA 410 (848)
T ss_pred eEEEEECCcC--HHHHHHHHHHHhCC----ChHHEEEEeCCCCCcCCccccccHHHHHHHHH
Confidence 5888888874 33333333332221 11113444558999998876556665554444
No 230
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=21.01 E-value=7.5e+02 Score=23.80 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc------CCHHHHHHHHHcCCCEEEEc---CHHHH
Q psy9378 219 GEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS------KPISHIRYAAEYGIDTMTFD---NEIEL 289 (522)
Q Consensus 219 ~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS------K~~~eL~~A~~~Gv~~i~vD---S~~EL 289 (522)
+.+++.++.+++.=.+. +.. .++.+++++++.+-++.+.. .....+++..+.|+..+++. |++||
T Consensus 2 ~~~~~~l~~l~~~g~dg-i~v-----~~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei 75 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDG-ILV-----SNPGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSPELSLEEI 75 (233)
T ss_pred hHHHHHHHHHHhCCCCE-EEE-----cCHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHH
Confidence 45666666666532211 211 37888999998864444333 66788888889998877665 57777
Q ss_pred HHHhhhCCCCeEEEEEe
Q psy9378 290 QKVKQFHPTAQLVIRIR 306 (522)
Q Consensus 290 ~~i~~~~~~~~V~LRIn 306 (522)
+.|.+..+..++-+-|.
T Consensus 76 ~~i~~~~~~~~~Ev~v~ 92 (233)
T PF01136_consen 76 KEIAENSPGVPLEVIVH 92 (233)
T ss_pred HHHHHhCCCCeEEEEEe
Confidence 77777664344444443
No 231
>PRK09004 FMN-binding protein MioC; Provisional
Probab=21.00 E-value=6.3e+02 Score=22.88 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=56.6
Q ss_pred CCeEEeeecCCCcHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEEEcCHHHHHHHhhhCCCCeEEEEEeeCCCccc
Q psy9378 234 RVDPYYAVKCNDSQMVLEVLAALGTGFDCASKPISHIRYAAEYGIDTMTFDNEIELQKVKQFHPTAQLVIRIRCDAEVAQ 313 (522)
Q Consensus 234 ~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaSK~~~eL~~A~~~Gv~~i~vDS~~EL~~i~~~~~~~~V~LRIn~~~~~~~ 313 (522)
++.|+|+.-+.....+++.+++. +.+.|.. +.+-+..+++.+. ....++=+.+..+
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~----------------~~~~g~~-~~~~~~~~~~~l~----~~~~li~~~sT~G--- 58 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEK----------------LEEAGFS-TETLHGPLLDDLS----ASGLWLIVTSTHG--- 58 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHH----------------HHHcCCc-eEEeccCCHHHhc----cCCeEEEEECCCC---
Confidence 45678887777777777666432 2234443 2222222233332 2344444443321
Q ss_pred CCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEe-cCCCCCChHHHHHHHHHHHHHHHHHhhcCC
Q psy9378 314 CQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFH-VGSGCGDPPVFGRAIYSARQIFDLGNSLGF 378 (522)
Q Consensus 314 ~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH-~GS~~~~~~~~~~ai~~~~~l~~~~~~~G~ 378 (522)
-|=.|+ ++..+++.+++....+.|+.+- +|.+....+.|-.+.+.+. +.++++|.
T Consensus 59 ------~Ge~p~-~~~~f~~~L~~~~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld---~~l~~lGa 114 (146)
T PRK09004 59 ------AGDLPD-NLQPFFEELQEQKPDLSQVRFAAIGIGSSEYDTFCGAIDKLE---QLLKAKGA 114 (146)
T ss_pred ------CCCCCh-hHHHHHHHHHhcCCCCCCCEEEEEeecCCCHHHHhHHHHHHH---HHHHHcCC
Confidence 244465 7888888776543334555544 3444444456666655443 34555663
No 232
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.96 E-value=7.8e+02 Score=23.97 Aligned_cols=23 Identities=13% Similarity=0.006 Sum_probs=12.7
Q ss_pred ccCcCCCHHHHHHHHhhCCCeEEEEEEe
Q psy9378 321 GCDPISEAPRLLRLAKSLDLDVVGVSFH 348 (522)
Q Consensus 321 Gi~~e~e~~~ll~~~k~~~L~l~GlhfH 348 (522)
|++++ .+.+.++ .|...+|+-..
T Consensus 156 GV~~~-N~~~~l~----aGa~~vg~Gs~ 178 (204)
T TIGR01182 156 GINLA-NVRDYLA----APNVACGGGSW 178 (204)
T ss_pred CCCHH-HHHHHHh----CCCEEEEEChh
Confidence 77765 5555443 46666664433
No 233
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.65 E-value=1e+03 Score=25.20 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=29.3
Q ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC----CCeEEeeecCCCcH-HHHHHHHHcCCe
Q psy9378 209 KEDAFYVLDVGEIVRKHEDWKLKLP----RVDPYYAVKCNDSQ-MVLEVLAALGTG 259 (522)
Q Consensus 209 ~~tP~yV~Dl~~I~~ni~~l~~~lp----~~~i~YAvKAN~~~-~Vlk~L~~~G~G 259 (522)
.|.|+ .+.+.+.+.++.+++... ..++ .|=+|... .+-+.+.+..+.
T Consensus 157 mGEPL--~N~d~vi~al~~l~~~~g~~~s~r~I--tVsT~G~~~~i~~l~~~~~~~ 208 (345)
T PRK14466 157 MGEPL--DNLDEVLKALEILTAPYGYGWSPKRI--TVSTVGLKKGLKRFLEESECH 208 (345)
T ss_pred eCcCc--ccHHHHHHHHHHHhhccccCcCCceE--EEEcCCCchHHHHHhhccCcE
Confidence 48898 678888888888865421 2233 36777754 465555544443
No 234
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=20.65 E-value=7.6e+02 Score=24.91 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=8.0
Q ss_pred CHHHHHHHHhhCCCe
Q psy9378 327 EAPRLLRLAKSLDLD 341 (522)
Q Consensus 327 e~~~ll~~~k~~~L~ 341 (522)
++.+.++.+++.|+.
T Consensus 135 ~vl~~i~~~~~~G~~ 149 (302)
T TIGR02668 135 RVIEGIESAVDAGLT 149 (302)
T ss_pred HHHHHHHHHHHcCCC
Confidence 455555555555543
No 235
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=1.3e+02 Score=28.32 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=35.3
Q ss_pred CeEEEEEeeCCCcccCCCCCccccCcC-CCHHHHHHHHhhCCCeEEEEEEe-cCCCC
Q psy9378 299 AQLVIRIRCDAEVAQCQLGMKFGCDPI-SEAPRLLRLAKSLDLDVVGVSFH-VGSGC 353 (522)
Q Consensus 299 ~~V~LRIn~~~~~~~~~~~sKFGi~~e-~e~~~ll~~~k~~~L~l~GlhfH-~GS~~ 353 (522)
.+|+|=||+. ||-|++|. ..++.|.+..+..|+.+.|+=+. ++.|.
T Consensus 25 GkVlLIVNtA---------SkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QE 72 (162)
T COG0386 25 GKVLLIVNTA---------SKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQFGGQE 72 (162)
T ss_pred CcEEEEEEcc---------cccCCcHhHHHHHHHHHHHhhCCcEEEeccccccccCC
Confidence 5788888874 88999983 25777788888899999998776 34443
No 236
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.55 E-value=6.1e+02 Score=26.44 Aligned_cols=174 Identities=12% Similarity=0.028 Sum_probs=0.0
Q ss_pred eHHHHHHHHHHHHHhCCCCeEEeeecCC---CcHHHHHHHHHcCCeEEEEc----------CCHHH----HHHHHHcCCC
Q psy9378 217 DVGEIVRKHEDWKLKLPRVDPYYAVKCN---DSQMVLEVLAALGTGFDCAS----------KPISH----IRYAAEYGID 279 (522)
Q Consensus 217 Dl~~I~~ni~~l~~~lp~~~i~YAvKAN---~~~~Vlk~L~~~G~GfDvaS----------K~~~e----L~~A~~~Gv~ 279 (522)
|+..|.+..+++++.+.+-++.|.+..+ .+. ....|.|...| .+.++ ++.+.+.|+.
T Consensus 15 ~~~~L~~~A~~ir~~~~g~~v~~~~~~~i~~T~~------C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~ 88 (343)
T TIGR03551 15 NLFELFRLADELRRDIVGDTVTYVVNRNINFTNV------CYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGAT 88 (343)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEeeeccccccc------cccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCC
Q ss_pred EEEEc-------CHHHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEe-cCC
Q psy9378 280 TMTFD-------NEIELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFH-VGS 351 (522)
Q Consensus 280 ~i~vD-------S~~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH-~GS 351 (522)
.+.+- ..+.+..+.+.-++....+.+..-.........+..|+... +.++++|+.|+.-. | .|.
T Consensus 89 ~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~----e~l~~LkeAGl~~i----~~~~~ 160 (343)
T TIGR03551 89 EVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVE----EALKRLKEAGLDSM----PGTAA 160 (343)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHH----HHHHHHHHhCcccc----cCcch
Q ss_pred CCCChHHHHH------HHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q psy9378 352 GCGDPPVFGR------AIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALD 409 (522)
Q Consensus 352 ~~~~~~~~~~------ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~ 409 (522)
...+.+.+.. ..+...+.++.+++.| |.+..|+-.....++++..+.+...-+
T Consensus 161 E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~G-----i~v~s~~i~G~~Et~ed~~~~l~~lr~ 219 (343)
T TIGR03551 161 EILDDEVRKVICPDKLSTAEWIEIIKTAHKLG-----IPTTATIMYGHVETPEHWVDHLLILRE 219 (343)
T ss_pred hhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcC-----CcccceEEEecCCCHHHHHHHHHHHHH
No 237
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.44 E-value=8.3e+02 Score=24.77 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=59.8
Q ss_pred CCeEEeeecCCCcHHHHHHHHHcCC-eEEEEc---CCHHHHHHHHHcCCCE--EEEcCHHHHHHHhhhCC--CCeEEE-E
Q psy9378 234 RVDPYYAVKCNDSQMVLEVLAALGT-GFDCAS---KPISHIRYAAEYGIDT--MTFDNEIELQKVKQFHP--TAQLVI-R 304 (522)
Q Consensus 234 ~~~i~YAvKAN~~~~Vlk~L~~~G~-GfDvaS---K~~~eL~~A~~~Gv~~--i~vDS~~EL~~i~~~~~--~~~V~L-R 304 (522)
+.++.--+|+-|-++|.+.+.+.|. =+|=.+ -+.+-++.|++.|... +++-+.++.++|.++-. ..++.+ -
T Consensus 115 GGrmSGLv~T~PI~evi~~Ie~~ggiVLd~~tA~IDq~~Gv~kAie~Gyk~IaVTV~~~~~A~~iRele~~~~~~~~if~ 194 (258)
T PF09872_consen 115 GGRMSGLVSTTPIPEVIERIEEKGGIVLDPETARIDQVEGVKKAIEMGYKRIAVTVADAEDAKKIRELEKEEGVNIYIFG 194 (258)
T ss_pred cceeeeeeeccchHHHHHHHHhcCCEEeCCccccccHHHHHHHHHHcCCceEEEEecCHHHHHHHHHhhccCCCceEEEE
Confidence 3567777999999999999998873 444333 4556778899998763 67888889999988632 222222 1
Q ss_pred EeeCCCcccCCCCCccccCcCCCHHHHHHH
Q psy9378 305 IRCDAEVAQCQLGMKFGCDPISEAPRLLRL 334 (522)
Q Consensus 305 In~~~~~~~~~~~sKFGi~~e~e~~~ll~~ 334 (522)
+.. -|++.+ ++..+++.
T Consensus 195 VHt------------TGis~e-eA~~l~~~ 211 (258)
T PF09872_consen 195 VHT------------TGISEE-EAERLFEY 211 (258)
T ss_pred EEc------------cCCCHH-HHHHHHHH
Confidence 111 277776 77777664
No 238
>PRK06801 hypothetical protein; Provisional
Probab=20.43 E-value=4e+02 Score=27.45 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=30.1
Q ss_pred HHHHHHHHcCC--CEEEEcCHHHHHHHhhhCC--CCeEEEEEeeC
Q psy9378 268 SHIRYAAEYGI--DTMTFDNEIELQKVKQFHP--TAQLVIRIRCD 308 (522)
Q Consensus 268 ~eL~~A~~~Gv--~~i~vDS~~EL~~i~~~~~--~~~V~LRIn~~ 308 (522)
+-|..|.+.|. ..+|+.|.+.++.+.+.+. +.+|+|-+.++
T Consensus 8 ~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~ 52 (286)
T PRK06801 8 NGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEV 52 (286)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 45677777764 3588889999988888763 46788887765
No 239
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.38 E-value=6e+02 Score=26.71 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=49.5
Q ss_pred HHHHHHHhhCCCeEEEEEEecCCCCCChHHHHH-----HHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHH
Q psy9378 329 PRLLRLAKSLDLDVVGVSFHVGSGCGDPPVFGR-----AIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEI 403 (522)
Q Consensus 329 ~~ll~~~k~~~L~l~GlhfH~GS~~~~~~~~~~-----ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~ 403 (522)
.+.++.+++.|++ .+++|-|..+.+.+.. ..+.+.+.++.+++.|++.--+|+==|+|+.. .+++.+.
T Consensus 100 ~e~l~~l~~~G~~----rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt---~~~~~~~ 172 (377)
T PRK08599 100 KEKLQVLKDSGVN----RISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT---IEDFKES 172 (377)
T ss_pred HHHHHHHHHcCCC----EEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC---HHHHHHH
Confidence 3556666777765 3445555555544322 23455566677788886533456666777654 5666665
Q ss_pred HHHHHHhhCCCC-CCcEEEecCccee
Q psy9378 404 INVALDEYFPVE-EGVSIIAEPGRYY 428 (522)
Q Consensus 404 I~~~l~~~~~~~-~~~~li~EPGR~l 428 (522)
+..+.+ .-+.. .-..+..+||.-+
T Consensus 173 l~~~~~-l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 173 LAKALA-LDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred HHHHHc-cCCCEEeeeceeecCCChh
Confidence 554432 21100 1123457887544
No 240
>PRK00915 2-isopropylmalate synthase; Validated
Probab=20.31 E-value=2.9e+02 Score=30.82 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=17.1
Q ss_pred CCccccCcCCCHH----HHHHHHhhCCCeE
Q psy9378 317 GMKFGCDPISEAP----RLLRLAKSLDLDV 342 (522)
Q Consensus 317 ~sKFGi~~e~e~~----~ll~~~k~~~L~l 342 (522)
..++|.+.+ ++. +.++.+++.++.+
T Consensus 108 ~~~l~~s~~-e~l~~~~~~v~~ak~~g~~v 136 (513)
T PRK00915 108 EYKLKMSRE-EVLEMAVEAVKYARSYTDDV 136 (513)
T ss_pred HHHhCCCHH-HHHHHHHHHHHHHHHCCCeE
Confidence 357888876 544 5566777888775
No 241
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.25 E-value=8.7e+02 Score=25.38 Aligned_cols=167 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred eHHHHHHHHHHHHHhCCCCeEEeeecCCCcHHHHHHHHHcCCeEEEEc----------CCHHH----HHHHHHcCCCEEE
Q psy9378 217 DVGEIVRKHEDWKLKLPRVDPYYAVKCNDSQMVLEVLAALGTGFDCAS----------KPISH----IRYAAEYGIDTMT 282 (522)
Q Consensus 217 Dl~~I~~ni~~l~~~lp~~~i~YAvKAN~~~~Vlk~L~~~G~GfDvaS----------K~~~e----L~~A~~~Gv~~i~ 282 (522)
|+..|.+..+++++.+.+-++.|.+..+-+ ...... ..|.|...+ .+.++ ++.+.+.|+..+.
T Consensus 24 ~~~~L~~~A~~vr~~~~g~~v~~~~~~~in--~Tn~C~-~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~~G~~~v~ 100 (351)
T TIGR03700 24 DLLTLGELAALVRERKHGDKVYFNVNRHLN--YTNICV-NGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYAPGATEVH 100 (351)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEeccCCcc--cccccc-cCCccCceeCCCCCcccCCCCHHHHHHHHHHHHHCCCcEEE
Q ss_pred EcCH-----------HHHHHHhhhCCCCeEEE-------EEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEE
Q psy9378 283 FDNE-----------IELQKVKQFHPTAQLVI-------RIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVG 344 (522)
Q Consensus 283 vDS~-----------~EL~~i~~~~~~~~V~L-------RIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~G 344 (522)
+-|- +-++.|.+..|...+.. ++..- .|+..+ +.++++++.|+.-.-
T Consensus 101 l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~-----------~g~~~~----e~l~~LkeAGld~~~ 165 (351)
T TIGR03700 101 IVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKI-----------SGLPTE----EVLDELKEAGLDSMP 165 (351)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHH-----------cCCCHH----HHHHHHHHcCCCcCC
Q ss_pred EEEecCCCCCChHHH------HHHHHHHHHHHHHHhhcCCCccEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q psy9378 345 VSFHVGSGCGDPPVF------GRAIYSARQIFDLGNSLGFSMRVLDLGGGYPGYTGYSMNRIAEIINVALD 409 (522)
Q Consensus 345 lhfH~GS~~~~~~~~------~~ai~~~~~l~~~~~~~G~~l~~LdIGGGf~~~~~~~~~~~a~~I~~~l~ 409 (522)
|.|....+.+.+ ....++..+.++.+++.| |.+..|+-.....++++..+.+...-+
T Consensus 166 ---~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~G-----i~~~sg~i~GlgEt~edrv~~l~~Lr~ 228 (351)
T TIGR03700 166 ---GGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELG-----LKTNATMLYGHIETPAHRVDHMLRLRE 228 (351)
T ss_pred ---CCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcC-----CCcceEEEeeCCCCHHHHHHHHHHHHH
No 242
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.23 E-value=1.6e+02 Score=30.68 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHhhhC-CCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHHhhCCCeEEEEEEecCCC
Q psy9378 289 LQKVKQFH-PTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLAKSLDLDVVGVSFHVGSG 352 (522)
Q Consensus 289 L~~i~~~~-~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~k~~~L~l~GlhfH~GS~ 352 (522)
++.|.+.. ++..|++|+++... .+-|.+++ ++.++++.+.+.++.+ ||.|.|+.
T Consensus 206 I~aIR~avG~d~~v~vris~~~~-------~~~g~~~e-ea~~ia~~Le~~Gvd~--iev~~g~~ 260 (338)
T cd04733 206 YDAIRAAVGPGFPVGIKLNSADF-------QRGGFTEE-DALEVVEALEEAGVDL--VELSGGTY 260 (338)
T ss_pred HHHHHHHcCCCCeEEEEEcHHHc-------CCCCCCHH-HHHHHHHHHHHcCCCE--EEecCCCC
Confidence 34454443 46789999997431 23467777 8888888888888755 56777753
No 243
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=20.12 E-value=6.9e+02 Score=23.46 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=17.1
Q ss_pred HHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEE
Q psy9378 250 LEVLAALGTGFDCASKPISHIRYAAEYGIDTMT 282 (522)
Q Consensus 250 lk~L~~~G~GfDvaSK~~~eL~~A~~~Gv~~i~ 282 (522)
++.+...|.-+.++..+.+++..|.+.|+..+.
T Consensus 97 ~~~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~ 129 (212)
T PRK00043 97 ARALLGPDAIIGLSTHTLEEAAAALAAGADYVG 129 (212)
T ss_pred HHHHcCCCCEEEEeCCCHHHHHHHhHcCCCEEE
Confidence 333434443333333446667777777776543
No 244
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=20.12 E-value=8.9e+02 Score=24.31 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=72.6
Q ss_pred HHHHHHhhhCCCCeEEEEEeeCCCcccCCCCCccccCcCCCHHHHHHHH-hhCCCeEEEEEEecCCCCCChHHHHHHHHH
Q psy9378 287 IELQKVKQFHPTAQLVIRIRCDAEVAQCQLGMKFGCDPISEAPRLLRLA-KSLDLDVVGVSFHVGSGCGDPPVFGRAIYS 365 (522)
Q Consensus 287 ~EL~~i~~~~~~~~V~LRIn~~~~~~~~~~~sKFGi~~e~e~~~ll~~~-k~~~L~l~GlhfH~GS~~~~~~~~~~ai~~ 365 (522)
+.|......+|.....+=|||..+.+.. ..-+ ++.+..+.+.++ +..|+++.|- .|.+-+.++.+...+.+++
T Consensus 19 ~~l~~a~~~~p~~~f~vIiNP~sGPG~~---~~~~--pd~~Y~~~i~~L~~~~nv~vlGY-V~T~Yg~R~~~~V~~dI~~ 92 (253)
T PF12138_consen 19 DPLYDAIAAHPSVPFTVIINPNSGPGSA---PDPW--PDANYAAAIPRLNSYANVRVLGY-VHTSYGSRPLSEVKADIDT 92 (253)
T ss_pred HHHHHHHhcCCCCcEEEEEcCCCCCCCC---CCCC--CCHHHHHHHHHHHhcCCCcEEEE-EEccccCCCHHHHHHHHHH
Confidence 4454455667888888889997543100 0112 333677778888 6679999993 4544444455554444544
Q ss_pred HHHHHHHHhhcCCCccEEEEcCCCCCCC-C--CCHHHHHHHHHHHHHhhCCCCCCcEEEecCcceeeccc
Q psy9378 366 ARQIFDLGNSLGFSMRVLDLGGGYPGYT-G--YSMNRIAEIINVALDEYFPVEEGVSIIAEPGRYYVASA 432 (522)
Q Consensus 366 ~~~l~~~~~~~G~~l~~LdIGGGf~~~~-~--~~~~~~a~~I~~~l~~~~~~~~~~~li~EPGR~lva~a 432 (522)
........... -+.|.|=| .++ + ..-.+|.+.|...++..+.....-.++.-||.....++
T Consensus 93 Y~~W~~~~~~~-----~~~vdGIF-fDE~p~~~~~~~y~~~l~~~vk~~~~~~~~~~VV~NPGt~~p~~~ 156 (253)
T PF12138_consen 93 YASWYGQSEDY-----GYRVDGIF-FDEAPNDYANLPYYQNLYNYVKSAFGLGGDGLVVLNPGTAVPDPG 156 (253)
T ss_pred HhhccccccCC-----CcccceEE-EecCCCcHHHHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCcch
Confidence 43322111110 13334433 232 1 12445566677777663222356788999998665333
Done!